Pregenerated sensors for HPGD (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031613Ensembl transcript IDs: ENSMUST00000034026.10
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCACACTGGAACTCATTCCCTAACACTGGCCCGCAAATACAGCACTaGTTCAAAGAGTGGAATGGTTCGCTTGCAGGTCCCGGACAAGCT | + |
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Preference number: 1 (lower is better) Translates to: PHWNSFPNTGPQIQH*FKEWNGSLAGPGQA Trigger: AGCTTGTCCGGGACCTGCAAGCGAACCATTCCACTCTTTGAAGCAGTGCTGTATTTGCGGGCCAGTGTTAGGGAATGAGTTCCAGTGTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| 3UTR CCA 90 bp | TTCACATTCCCACCCATCAGACGTGTCACTGGGACACAGCCACACTaGAACTCATTCCCTAACACTGGCCCGCAAATACAGCACTGCTTC | + |
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Preference number: 1 (lower is better) Translates to: FTFPPIRRVTGTQPH*NSFPNTGPQIQHCF Trigger: GAAGCAGTGCTGTATTTGCGGGCCAGTGTTAGGGAATGAGTTCCAGTGTGGCTGTGTCCCAGTGACACGTCTGATGGGTGGGAATGTGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| 3UTR-3UTR TCA 90 bp | TCACATTCCCACCCATCAGACGTGTCACTGGGACACAGCCACACTGGAACTCATAAGATGCAGTCTGAGTaGGTCACTTGTGCTGGGTTT | + |
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Preference number: 2 (lower is better) Translates to: SHSHPSDVSLGHSHTGTHKMQSE*VTCAGF Trigger: AAACCCAGCACAAGTGACTCACTCAGACTGCATCTT...ATGAGTTCCAGTGTGGCTGTGTCCCAGTGACACGTCTGATGGGTGGGAATGTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| 3UTR-3UTR CCA 90 bp | TCACATTCCCACCCATCAGACGTGTCACTGGGACACAGCCACACTGGAACTCATGTGAGTCACTTGTGCTaGGTTTCAGTTATGGCTGAC | + |
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Preference number: 2 (lower is better) Translates to: SHSHPSDVSLGHSHTGTHVSHLC*VSVMAD Trigger: GTCAGCCATAACTGAAACCCAGCACAAGTGACTCAC...ATGAGTTCCAGTGTGGCTGTGTCCCAGTGACACGTCTGATGGGTGGGAATGTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| 3UTR-3UTR GCA 90 bp | AAGAAAATCATCTTCCTTGATTTGGACCTGAACTGTGAGTTTTCAGTGTTGGTAAACCTAGTTTTGGTTTaGACTGCATTTTTGTTAGCT | + |
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Preference number: 2 (lower is better) Translates to: KKIIFLDLDLNCEFSVLVNLVLV*TAFLLA Trigger: AGCTAACAAAAATGCAGTGCAAACCAAAACTAGGTT...TACCAACACTGAAAACTCACAGTTCAGGTCCAAATCAAGGAAGATGATTTTCTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| 3UTR CCA 72 bp | CCACCCATCAGACGTGTCACTGGGACACAGCCACACTaGAACTCATTCCCTAACACTGGCCCGCAAATACAG | + |
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Preference number: 3 (lower is better) Translates to: PPIRRVTGTQPH*NSFPNTGPQIQ Trigger: CTGTATTTGCGGGCCAGTGTTAGGGAATGAGTTCCAGTGTGGCTGTGTCCCAGTGACACGTCTGATGGGTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| 3UTR GCA 72 bp | AACTCATTCCCTAACACTGGCCCGCAAATACAGCACTaGTTCAAAGAGTGGAATGGTTCGCTTGCAGGTCCC | + |
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Preference number: 3 (lower is better) Translates to: NSFPNTGPQIQH*FKEWNGSLAGP Trigger: GGGACCTGCAAGCGAACCATTCCACTCTTTGAAGCAGTGCTGTATTTGCGGGCCAGTGTTAGGGAATGAGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| 3UTR-3UTR CAA 90 bp | ACAGTTTCACATTCCCACCCATCAGACGTGTCACTGGGACACAGCCACACTGGAGGTTATAACCTAGTTTaGGTTTGCACTGCATTTTTG | + |
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Preference number: 3 (lower is better) Translates to: TVSHSHPSDVSLGHSHTGGYNLV*VCTAFL Trigger: CAAAAATGCAGTGCAAACCAAAACTAGGTTATAACC...TCCAGTGTGGCTGTGTCCCAGTGACACGTCTGATGGGTGGGAATGTGAAACTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| 3UTR TCA 72 bp | ATTGAAAAAGCTACACTAGTAAAGATGCAGTCTGAGTaGGTCACTTGTGCTGGGTTTCAGTTATGGCTGACG | + |
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Preference number: 3 (lower is better) Translates to: IEKATLVKMQSE*VTCAGFQLWLT Trigger: CGTCAGCCATAACTGAAACCCAGCACAAGTGACTCACTCAGACTGCATCTTTACTAGTGTAGCTTTTTCAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| 3UTR TCA 72 bp | ACTAAATATTTCCATTGTAAAGGAGCTTCCCGCTTTTaGAGTGCAAACACACGAAGTGAATCATTTAAAATC | + |
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Preference number: 3 (lower is better) Translates to: TKYFHCKGASRF*SANTRSESFKI Trigger: GATTTTAAATGATTCACTTCGTGTGTTTGCACTTCAAAAGCGGGAAGCTCCTTTACAATGGAAATATTTAGT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| CDS-3UTR GCA 90 bp | AGTTTCACATTCCCACCCATCAGACGTGTCACTGGGACACAGCCACACTGGAACTTTGCCTATGCCCTGTaGCGCGCCGGTCACCAGAGC | + |
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Preference number: 4 (lower is better) Translates to: SFTFPPIRRVTGTQPHWNFAYAL*RAGHQS Trigger: GCTCTGGTGACCGGCGCGGCACAGGGCATAGGCAAA...GTTCCAGTGTGGCTGTGTCCCAGTGACACGTCTGATGGGTGGGAATGTGAAACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| CDS-3UTR GCA 90 bp | GGACACAGCCACACTGGAACTCATTCCCTAACACTGGCCCGCAAATACAGCACTCGAAGGCTTTGCCTATaGCCTGTGCCGCGCCGGTCA | + |
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Preference number: 4 (lower is better) Translates to: GHSHTGTHSLTLARKYSTRRLCL*PVPRRS Trigger: TGACCGGCGCGGCACAGGGCATAGGCAAAGCCTTCG...AGTGCTGTATTTGCGGGCCAGTGTTAGGGAATGAGTTCCAGTGTGGCTGTGTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| CDS-3UTR CCA 90 bp | GGGACACAGCCACACTGGAACTCATTCCCTAACACTGGCCCGCAAATACAGCACTGTGTCCACAAAGCCTaGGCAAATGACATTCAGTCT | + |
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Preference number: 4 (lower is better) Translates to: GTQPHWNSFPNTGPQIQHCVHKA*ANDIQS Trigger: AGACTGAATGTCATTTGCCCAGGCTTTGTGGACACA...GTGCTGTATTTGCGGGCCAGTGTTAGGGAATGAGTTCCAGTGTGGCTGTGTCCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| CDS-3UTR CCA 90 bp | TCACATTCCCACCCATCAGACGTGTCACTGGGACACAGCCACACTGGAACTCATCAATGGATTCAAGGATaGGTGTGTCCACAAAGCCTG | + |
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Preference number: 4 (lower is better) Translates to: SHSHPSDVSLGHSHTGTHQWIQG*VCPQSL Trigger: CAGGCTTTGTGGACACACCCATCCTTGAATCCATTG...ATGAGTTCCAGTGTGGCTGTGTCCCAGTGACACGTCTGATGGGTGGGAATGTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| CDS-3UTR CCA 90 bp | TTACTAAATATTTCCATTGTAAAGGAGCTTCCCGCTTTTGAAGTGCAAACACACGCTACCTTGGCGCCATaGAGCAGCAGAGCCTCAGCG | + |
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Preference number: 4 (lower is better) Translates to: LLNISIVKELPAFEVQTHATLAP*SSRASA Trigger: CGCTGAGGCTCTGCTGCTCCATGGCGCCAAGGTAGC...GTGTGTTTGCACTTCAAAAGCGGGAAGCTCCTTTACAATGGAAATATTTAGTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| CDS-3UTR CCA 90 bp | CGTGTCACTGGGACACAGCCACACTGGAACTCATTCCCTAACACTGGCCCGCAAGATTTATTAATCCATTaGCAATGGTTGATGGGTGTA | + |
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Preference number: 4 (lower is better) Translates to: RVTGTQPHWNSFPNTGPQDLLIH*QWLMGV Trigger: TACACCCATCAACCATTGCCAATGGATTAATAAATC...TTGCGGGCCAGTGTTAGGGAATGAGTTCCAGTGTGGCTGTGTCCCAGTGACACG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| CDS-3UTR CCA 90 bp | AAAATCATCTTCCTTGATTTGGACCTGAACTGTGAGTTTTCAGTGTTGGTAACACCACCAATGCTACCTTaGCGCCATGGAGCAGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: KIIFLDLDLNCEFSVLVTPPMLP*RHGAAE Trigger: CTCTGCTGCTCCATGGCGCCAAGGTAGCATTGGTGG...TGTTACCAACACTGAAAACTCACAGTTCAGGTCCAAATCAAGGAAGATGATTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| CDS-3UTR CCA 90 bp | GGACACAGCCACACTGGAACTCATTCCCTAACACTGGCCCGCAAATACAGCACTTTTCTTCTTTTTCAATaGATTCAAGGATGGGTGTGT | + |
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Preference number: 4 (lower is better) Translates to: GHSHTGTHSLTLARKYSTFLLFQ*IQGWVC Trigger: ACACACCCATCCTTGAATCCATTGAAAAAGAAGAAA...AGTGCTGTATTTGCGGGCCAGTGTTAGGGAATGAGTTCCAGTGTGGCTGTGTCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| 3UTR CAA 72 bp | TTCCTTGATTTGGACCTGAACTGTGAGTTTTCAGTGTaGGTAACAGTTTCACATTCCCACCCATCAGACGTG | + |
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Preference number: 4 (lower is better) Translates to: FLDLDLNCEFSV*VTVSHSHPSDV Trigger: CACGTCTGATGGGTGGGAATGTGAAACTGTTACCAACACTGAAAACTCACAGTTCAGGTCCAAATCAAGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| CDS-3UTR TCA 90 bp | AAAATCATCTTCCTTGATTTGGACCTGAACTGTGAGTTTTCAGTGTTGGTAACACAAAGCCTGGGCAAATaGCATTCAGTCTTACACCGC | + |
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Preference number: 4 (lower is better) Translates to: KIIFLDLDLNCEFSVLVTQSLGK*HSVLHR Trigger: GCGGTGTAAGACTGAATGTCATTTGCCCAGGCTTTG...TGTTACCAACACTGAAAACTCACAGTTCAGGTCCAAATCAAGGAAGATGATTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| CDS-3UTR TCA 90 bp | AAAATCATCTTCCTTGATTTGGACCTGAACTGTGAGTTTTCAGTGTTGGTAACAACGAACAGTGTCTTCTaGGGTTCGAACTGCTCATCT | + |
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Preference number: 4 (lower is better) Translates to: KIIFLDLDLNCEFSVLVTTNSVF*GSNCSS Trigger: AGATGAGCAGTTCGAACCTCAGAAGACACTGTTCGT...TGTTACCAACACTGAAAACTCACAGTTCAGGTCCAAATCAAGGAAGATGATTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| CDS-3UTR CAA 90 bp | AGTTTCACATTCCCACCCATCAGACGTGTCACTGGGACACAGCCACACTGGAACGCCTCAGCGAAGGCTTaGCCTATGCCCTGTGCCGCG | + |
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Preference number: 5 (lower is better) Translates to: SFTFPPIRRVTGTQPHWNASAKA*PMPCAA Trigger: CGCGGCACAGGGCATAGGCAAAGCCTTCGCTGAGGC...GTTCCAGTGTGGCTGTGTCCCAGTGACACGTCTGATGGGTGGGAATGTGAAACT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| CDS-3UTR CAA 90 bp | ACAGTTTCACATTCCCACCCATCAGACGTGTCACTGGGACACAGCCACACTGGATCCCAGTTTTTCTCATaGTTCACGCCTGCATTGTTG | + |
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Preference number: 5 (lower is better) Translates to: TVSHSHPSDVSLGHSHTGSQFFS*FTPALL Trigger: CAACAATGCAGGCGTGAACAATGAGAAAAACTGGGA...TCCAGTGTGGCTGTGTCCCAGTGACACGTCTGATGGGTGGGAATGTGAAACTGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| CDS-3UTR CAA 90 bp | TCACATTCCCACCCATCAGACGTGTCACTGGGACACAGCCACACTGGAACTCATGCCTTCACCTCCGTTTaGCTTACTCATGTAATCCAA | + |
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Preference number: 5 (lower is better) Translates to: SHSHPSDVSLGHSHTGTHAFTSV*LTHVIQ Trigger: TTGGATTACATGAGTAAGCAAAACGGAGGTGAAGGC...ATGAGTTCCAGTGTGGCTGTGTCCCAGTGACACGTCTGATGGGTGGGAATGTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| CDS TCA 90 bp | ATTCAGTCTTACACCGCTTTTCATGAGGTTAGCAGCCATCGCTGCTaGGCGTGTGAATCCGATGATGCCGTGCTTCGAAGCACAATAAAC | + |
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Preference number: 5 (lower is better) Translates to: IQSYTAFHEVSSHRC*ACESDDAVLRSTIN Trigger: GTTTATTGTGCTTCGAAGCACGGCATCATCGGATTCACACGCTCAGCAGCGATGGCTGCTAACCTCATGAAAAGCGGTGTAAGACTGAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| CDS-3UTR CAA 90 bp | ACAGTTTCACATTCCCACCCATCAGACGTGTCACTGGGACACAGCCACACTGGAAAAAGTATCTCTCAGTaGTTTCTGGTCAGCCACATC | + |
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Preference number: 5 (lower is better) Translates to: TVSHSHPSDVSLGHSHTGKSISQ*FLVSHI Trigger: GATGTGGCTGACCAGAAACAACTGAGAGATACTTTT...TCCAGTGTGGCTGTGTCCCAGTGACACGTCTGATGGGTGGGAATGTGAAACTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| CDS-3UTR CAA 90 bp | TCACATTCCCACCCATCAGACGTGTCACTGGGACACAGCCACACTGGAACTCATTTGTTCACGCCTGCATaGTTGACCAAAATATCCAAT | + |
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Preference number: 5 (lower is better) Translates to: SHSHPSDVSLGHSHTGTHLFTPA*LTKISN Trigger: ATTGGATATTTTGGTCAACAATGCAGGCGTGAACAA...ATGAGTTCCAGTGTGGCTGTGTCCCAGTGACACGTCTGATGGGTGGGAATGTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| CDS-3UTR CAA 90 bp | GGACACAGCCACACTGGAACTCATTCCCTAACACTGGCCCGCAAATACAGCACTTTCATAATGGCACCATaGAGAGCATCATCTTCAATG | + |
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Preference number: 5 (lower is better) Translates to: GHSHTGTHSLTLARKYSTFIMAP*RASSSM Trigger: CATTGAAGATGATGCTCTCAATGGTGCCATTATGAA...AGTGCTGTATTTGCGGGCCAGTGTTAGGGAATGAGTTCCAGTGTGGCTGTGTCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| CDS CCA 90 bp | TTCTTCTTTTTCAATGGATTCAAGGATGGGTGTGTCCACAAAGCCTaGGCAAATGACATTCAGTCTTACACCGCTTTTCATGAGGTTAGC | + |
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Preference number: 5 (lower is better) Translates to: FFFFNGFKDGCVHKA*ANDIQSYTAFHEVS Trigger: GCTAACCTCATGAAAAGCGGTGTAAGACTGAATGTCATTTGCCCAGGCTTTGTGGACACACCCATCCTTGAATCCATTGAAAAAGAAGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| CDS-3UTR CAA 90 bp | AAAATCATCTTCCTTGATTTGGACCTGAACTGTGAGTTTTCAGTGTTGGTAACAAGCACAATAAACAGGTaGCTGCGCAACAGGCATGAG | + |
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Preference number: 5 (lower is better) Translates to: KIIFLDLDLNCEFSVLVTSTINR*LRNRHE Trigger: CTCATGCCTGTTGCGCAGCAACCTGTTTATTGTGCT...TGTTACCAACACTGAAAACTCACAGTTCAGGTCCAAATCAAGGAAGATGATTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| CDS-3UTR CAA 90 bp | ATCTTCCTTGATTTGGACCTGAACTGTGAGTTTTCAGTGTTGGTAACAGTTTCAGCTAATGAAGACATATaGATGATGATGCCGCCTTCA | + |
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Preference number: 5 (lower is better) Translates to: IFLDLDLNCEFSVLVTVSANEDI*MMMPPS Trigger: TGAAGGCGGCATCATCATCAATATGTCTTCATTAGC...TGAAACTGTTACCAACACTGAAAACTCACAGTTCAGGTCCAAATCAAGGAAGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| CDS-3UTR CAA 90 bp | AAAATCATCTTCCTTGATTTGGACCTGAACTGTGAGTTTTCAGTGTTGGTAACAATCCATTGGCAATGGTaGATGGGTGTAAAACCCCAT | + |
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Preference number: 5 (lower is better) Translates to: KIIFLDLDLNCEFSVLVTIHWQW*MGVKPH Trigger: ATGGGGTTTTACACCCATCAACCATTGCCAATGGAT...TGTTACCAACACTGAAAACTCACAGTTCAGGTCCAAATCAAGGAAGATGATTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| CDS-3UTR CAA 90 bp | TTACTAAATATTTCCATTGTAAAGGAGCTTCCCGCTTTTGAAGTGCAAACACACAGATTTATTAATCCATaGGCAATGGTTGATGGGTGT | + |
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Preference number: 5 (lower is better) Translates to: LLNISIVKELPAFEVQTHRFINP*AMVDGC Trigger: ACACCCATCAACCATTGCCAATGGATTAATAAATCT...GTGTGTTTGCACTTCAAAAGCGGGAAGCTCCTTTACAATGGAAATATTTAGTAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| CDS GCA 72 bp | CAGCAGAGCCTCAGCGAAGGCTTTGCCTATGCCCTGTaGCGCGCCGGTCACCAGAGCCACTTTGCCGTTCAC | + |
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Preference number: 6 (lower is better) Translates to: QQSLSEGFAYAL*RAGHQSHFAVH Trigger: GTGAACGGCAAAGTGGCTCTGGTGACCGGCGCGGCACAGGGCATAGGCAAAGCCTTCGCTGAGGCTCTGCTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| CDS TCA 72 bp | TACACCGCTTTTCATGAGGTTAGCAGCCATCGCTGCTaGGCGTGTGAATCCGATGATGCCGTGCTTCGAAGC | + |
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Preference number: 6 (lower is better) Translates to: YTAFHEVSSHRC*ACESDDAVLRS Trigger: GCTTCGAAGCACGGCATCATCGGATTCACACGCTCAGCAGCGATGGCTGCTAACCTCATGAAAAGCGGTGTA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| CDS TCA 72 bp | TGGTCAGCCACATCACACTGGACGAACAGTGTCTTCTaGGGTTCGAACTGCTCATCTAGGGCAGCTTTACAT | + |
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Preference number: 6 (lower is better) Translates to: WSATSHWTNSVF*GSNCSSRAALH Trigger: ATGTAAAGCTGCCCTAGATGAGCAGTTCGAACCTCAGAAGACACTGTTCGTCCAGTGTGATGTGGCTGACCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| CDS CAA 72 bp | TGCGCAACAGGCATGAGCCCTGCTAATGAAGACATATaGATGATGATGCCGCCTTCACCTCCGTTTTGCTTA | + |
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Preference number: 6 (lower is better) Translates to: CATGMSPANEDI*MMMPPSPPFCL Trigger: TAAGCAAAACGGAGGTGAAGGCGGCATCATCATCAATATGTCTTCATTAGCAGGGCTCATGCCTGTTGCGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| CDS CCA 72 bp | TTCAATGGATTCAAGGATGGGTGTGTCCACAAAGCCTaGGCAAATGACATTCAGTCTTACACCGCTTTTCAT | + |
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Preference number: 6 (lower is better) Translates to: FNGFKDGCVHKA*ANDIQSYTAFH Trigger: ATGAAAAGCGGTGTAAGACTGAATGTCATTTGCCCAGGCTTTGTGGACACACCCATCCTTGAATCCATTGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| CDS CAA 72 bp | AGACATATTGATGATGATGCCGCCTTCACCTCCGTTTaGCTTACTCATGTAATCCAAACCAAGATAGGTCCC | + |
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Preference number: 6 (lower is better) Translates to: RHIDDDAAFTSV*LTHVIQTKIGP Trigger: GGGACCTATCTTGGTTTGGATTACATGAGTAAGCAAAACGGAGGTGAAGGCGGCATCATCATCAATATGTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| CDS CAA 72 bp | GTCTGTTCCCAGTTTTTCTCATTGTTCACGCCTGCATaGTTGACCAAAATATCCAATCTTCCGAAATGGTCT | + |
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Preference number: 6 (lower is better) Translates to: VCSQFFSLFTPA*LTKISNLPKWS Trigger: AGACCATTTCGGAAGATTGGATATTTTGGTCAACAATGCAGGCGTGAACAATGAGAAAAACTGGGAACAGAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| CDS TCA 72 bp | GTTCCCAGTTTTTCTCATTGTTCACGCCTGCATTGTTaGCCAAAATATCCAATCTTCCGAAATGGTCTACAA | + |
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Preference number: 6 (lower is better) Translates to: VPSFSHCSRLHC*PKYPIFRNGLQ Trigger: TTGTAGACCATTTCGGAAGATTGGATATTTTGGTCAACAATGCAGGCGTGAACAATGAGAAAAACTGGGAAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| CDS CAA 72 bp | TGTTCCCAGTTTTTCTCATTGTTCACGCCTGCATTGTaGACCAAAATATCCAATCTTCCGAAATGGTCTACA | + |
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Preference number: 6 (lower is better) Translates to: CSQFFSLFTPAL*TKISNLPKWST Trigger: TGTAGACCATTTCGGAAGATTGGATATTTTGGTCAACAATGCAGGCGTGAACAATGAGAAAAACTGGGAACA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| CDS CAA 90 bp | ATTTGTAGAGTCTGTTCCCAGTTTTTCTCATTGTTCACGCCTGCATaGTTGACCAAAATATCCAATCTTCCGAAATGGTCTACAACTTTT | + |
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Preference number: 6 (lower is better) Translates to: ICRVCSQFFSLFTPA*LTKISNLPKWSTTF Trigger: AAAAGTTGTAGACCATTTCGGAAGATTGGATATTTTGGTCAACAATGCAGGCGTGAACAATGAGAAAAACTGGGAACAGACTCTACAAAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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| CDS CAA 72 bp | ATTCCTTTCGATGCCGTGATCTTCATAATGGCACCATaGAGAGCATCATCTTCAATGAGATTTATTAATCCA | + |
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Preference number: 6 (lower is better) Translates to: IPFDAVIFIMAP*RASSSMRFINP Trigger: TGGATTAATAAATCTCATTGAAGATGATGCTCTCAATGGTGCCATTATGAAGATCACGGCATCGAAAGGAAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034026.10 |
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