Pregenerated sensors for HPF1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038005Ensembl transcript IDs: ENSMUST00000037190.15, ENSMUST00000136098.2, ENSMUST00000146863.2, ENSMUST00000149267.8
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GTCGCTTGCAGCGTCGACAACTGCCTTGCAGATTCTCTTAAGGTCAGCATCTGTTCATCATCTCCTGAATaGGAGCGAATGCTTTCAGTC | + |
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Preference number: 2 (lower is better) Translates to: VACSVDNCLADSLKVSICSSSPE*ERMLSV Trigger: GACTGAAAGCATTCGCTCCCATTCAGGAGATGATGA...ACAGATGCTGACCTTAAGAGAATCTGCAAGGCAGTTGTCGACGCTGCAAGCGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000136098.2 ENSMUST00000149267.8 |
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| 3UTR-3UTR GCA 90 bp | GTCGCTTGCAGCGTCGACAACTGCCTTGCAGATTCTCTTAAGGTCAGCATCTGTTGGAACAACCAAGCCTaGACCATGAAAAGTCTTTGT | + |
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Preference number: 2 (lower is better) Translates to: VACSVDNCLADSLKVSICWNNQA*TMKSLC Trigger: ACAAAGACTTTTCATGGTGCAGGCTTGGTTGTTCCA...ACAGATGCTGACCTTAAGAGAATCTGCAAGGCAGTTGTCGACGCTGCAAGCGAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000136098.2 ENSMUST00000149267.8 |
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| 3UTR-3UTR TCA 90 bp | GTAACCGTGAGTTTGTGTATTCAGTACTGCAGAAGGAGGAGCTTTACTCACATGGTCTTTGTCACAACTTaGTGGCAGCAAACACATTGT | + |
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Preference number: 2 (lower is better) Translates to: VTVSLCIQYCRRRSFTHMVFVTT*WQQTHC Trigger: ACAATGTGTTTGCTGCCATCAAGTTGTGACAAAGAC...CATGTGAGTAAAGCTCCTCCTTCTGCAGTACTGAATACACAAACTCACGGTTAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136098.2 |
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| 3UTR-3UTR CAA 90 bp | GTCGCTTGCAGCGTCGACAACTGCCTTGCAGATTCTCTTAAGGTCAGCATCTGTAGTCTTTGTCACAACTaGATGGCAGCAAACACATTG | + |
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Preference number: 3 (lower is better) Translates to: VACSVDNCLADSLKVSICSLCHN*MAANTL Trigger: CAATGTGTTTGCTGCCATCAAGTTGTGACAAAGACT...ACAGATGCTGACCTTAAGAGAATCTGCAAGGCAGTTGTCGACGCTGCAAGCGAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136098.2 |
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| 3UTR TCA 72 bp | GCAAAGATGGCGCCCCCGAGATACCGATACACAAGCTaGGTTCAATATGACATTGAGGAAGTAATTCTGCTT | + |
|
Preference number: 3 (lower is better) Translates to: AKMAPPRYRYTS*VQYDIEEVILL Trigger: AAGCAGAATTACTTCCTCAATGTCATATTGAACTCAGCTTGTGTATCGGTATCTCGGGGGCGCCATCTTTGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000136098.2 |
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| 3UTR-3UTR CAA 90 bp | TTTATTTCTCCATTCCTTAAAAACAAAGCCCCGTCTGCTGGTCCCACTTCAAAGCACCATGAAAAGTCTTaGTCACAACCTTCTTATCTC | + |
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Preference number: 3 (lower is better) Translates to: FISPFLKNKAPSAGPTSKHHEKS*SQPSYL Trigger: GAGATAAGAAGGTTGTGACAAAGACTTTTCATGGTG...CTTTGAAGTGGGACCAGCAGACGGGGCTTTGTTTTTAAGGAATGGAGAAATAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000149267.8 |
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| CDS-3UTR CCA 90 bp | GTCGCTTGCAGCGTCGACAACTGCCTTGCAGATTCTCTTAAGGTCAGCATCTGTCAGGAGAATCCCAGCTaGCTTTTCAGGATCAAGCTC | + |
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Preference number: 4 (lower is better) Translates to: VACSVDNCLADSLKVSICQENPS*LFRIKL Trigger: GAGCTTGATCCTGAAAAGCCAGCTGGGATTCTCCTG...ACAGATGCTGACCTTAAGAGAATCTGCAAGGCAGTTGTCGACGCTGCAAGCGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000136098.2 ENSMUST00000149267.8 |
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| CDS-3UTR CCA 90 bp | TTATTTCTCCATTCCTTAAAAACAAAGCCCCGTCTGCTGGTCCCACTTCAAAGCGGCAAGCGCATCAGCTaGCTTTTCAGGATCAAGCTC | + |
|
Preference number: 4 (lower is better) Translates to: LFLHSLKTKPRLLVPLQSGKRIS*LFRIKL Trigger: GAGCTTGATCCTGAAAAGCCAGCTGATGCGCTTGCC...GCTTTGAAGTGGGACCAGCAGACGGGGCTTTGTTTTTAAGGAATGGAGAAATAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000037190.15 |
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| CDS-3UTR TCA 90 bp | ATTTCTCCATTCCTTAAAAACAAAGCCCCGTCTGCTGGTCCCACTTCAAAGCACCATCAGGAGAATCCCTaGAATACCCCATGTGGTACT | + |
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Preference number: 4 (lower is better) Translates to: ISPFLKNKAPSAGPTSKHHQENP*NTPCGT Trigger: AGTACCACATGGGGTATTTCAGGGATTCTCCTGATG...GTGCTTTGAAGTGGGACCAGCAGACGGGGCTTTGTTTTTAAGGAATGGAGAAAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000037190.15 |
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| CDS-3UTR CCA 90 bp | GTAACCGTGAGTTTGTGTATTCAGTACTGCAGAAGGAGGAGCTTTACTCACATGCAGGAGAATCCCAGCTaGCTTTTCAGGATCAAGCTC | + |
|
Preference number: 4 (lower is better) Translates to: VTVSLCIQYCRRRSFTHMQENPS*LFRIKL Trigger: GAGCTTGATCCTGAAAAGCCAGCTGGGATTCTCCTG...CATGTGAGTAAAGCTCCTCCTTCTGCAGTACTGAATACACAAACTCACGGTTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136098.2 |
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| CDS-3UTR CCA 90 bp | TTATTTCTCCATTCCTTAAAAACAAAGCCCCGTCTGCTGGTCCCACTTCAAAGCTCATCATCTCCTGAATaGGAGCGAATGCTTTCAGTC | + |
|
Preference number: 4 (lower is better) Translates to: LFLHSLKTKPRLLVPLQSSSSPE*ERMLSV Trigger: GACTGAAAGCATTCGCTCCCATTCAGGAGATGATGA...GCTTTGAAGTGGGACCAGCAGACGGGGCTTTGTTTTTAAGGAATGGAGAAATAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037190.15 |
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| CDS-3UTR GCA 90 bp | TTATTTCTCCATTCCTTAAAAACAAAGCCCCGTCTGCTGGTCCCACTTCAAAGCTGGAACAACCAAGCCTaGACCATGAAAAGTCTTTGT | + |
|
Preference number: 4 (lower is better) Translates to: LFLHSLKTKPRLLVPLQSWNNQA*TMKSLC Trigger: ACAAAGACTTTTCATGGTGCAGGCTTGGTTGTTCCA...GCTTTGAAGTGGGACCAGCAGACGGGGCTTTGTTTTTAAGGAATGGAGAAATAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000037190.15 |
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| CDS-3UTR GCA 90 bp | TTTATTTCTCCATTCCTTAAAAACAAAGCCCCGTCTGCTGGTCCCACTTCAAAGTGTTCTCTTCACTTCTaGTTGCCAGATGATCTTCAA | + |
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Preference number: 4 (lower is better) Translates to: FISPFLKNKAPSAGPTSKCSLHF*LPDDLQ Trigger: TTGAAGATCATCTGGCAAGCAGAAGTGAAGAGAACA...CTTTGAAGTGGGACCAGCAGACGGGGCTTTGTTTTTAAGGAATGGAGAAATAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037190.15 |
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| CDS-3UTR CAA 90 bp | ATTTCTCCATTCCTTAAAAACAAAGCCCCGTCTGCTGGTCCCACTTCAAAGCACCACCATGAAAAGTCTTaGTCACAACCTTCTTATCTC | + |
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Preference number: 5 (lower is better) Translates to: ISPFLKNKAPSAGPTSKHHHEKS*SQPSYL Trigger: GAGATAAGAAGGTTGTGACAAAGACTTTTCATGGTG...GTGCTTTGAAGTGGGACCAGCAGACGGGGCTTTGTTTTTAAGGAATGGAGAAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000037190.15 |
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| CDS GCA 72 bp | GTCGACAACTGCCTTGCAGATTCTCTTAAGGTCAGCTaGGGTCCCGCCCCGGCCGTCCGGCGCTTCCCGCCA | + |
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Preference number: 6 (lower is better) Translates to: VDNCLADSLKVS*GPAPAVRRFPP Trigger: TGGCGGGAAGCGCCGGACGGCCGGGGCGGGACCGCAGCTGACCTTAAGAGAATCTGCAAGGCAGTTGTCGAC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146863.2 |
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| CDS GCA 72 bp | AACTTACTCTTCTTCACCTCAACTGTCTTTTCACACTaGGGTCCCGCCCCGGCCGTCCGGCGCTTCCCGCCA | + |
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Preference number: 6 (lower is better) Translates to: NLLFFTSTVFSH*GPAPAVRRFPP Trigger: TGGCGGGAAGCGCCGGACGGCCGGGGCGGGACCGCAGTGTGAAAAGACAGTTGAGGTGAAGAAGAGTAAGTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000037190.15 ENSMUST00000136098.2 ENSMUST00000149267.8 |
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