Pregenerated sensors for HPDL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000043155Ensembl transcript IDs: ENSMUST00000055436.5
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCCTTTCTATCTGGGTGTAGTTCTGTGGAGGTGTGGTCCAGCTCCTaGTGGCGTGTGTCAGTTCCAACAGGCAAGGAGCACCAAGGACAA | + |
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Preference number: 1 (lower is better) Translates to: AFLSGCSSVEVWSSS*WRVSVPTGKEHQGQ Trigger: TTGTCCTTGGTGCTCCTTGCCTGTTGGAACTGACACACGCCAGCAGGAGCTGGACCACACCTCCACAGAACTACACCCAGATAGAAAGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| 3UTR CCA 90 bp | GAGGGAACTAGAGCCTTTCTATCTGGGTGTAGTTCTGTGGAGGTGTaGTCCAGCTCCTGCTGGCGTGTGTCAGTTCCAACAGGCAAGGAG | + |
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Preference number: 1 (lower is better) Translates to: EGTRAFLSGCSSVEV*SSSCWRVSVPTGKE Trigger: CTCCTTGCCTGTTGGAACTGACACACGCCAGCAGGAGCTGGACCACACCTCCACAGAACTACACCCAGATAGAAAGGCTCTAGTTCCCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| 3UTR CCA 90 bp | TTTCTATCTGGGTGTAGTTCTGTGGAGGTGTGGTCCAGCTCCTGCTaGCGTGTGTCAGTTCCAACAGGCAAGGAGCACCAAGGACAAGTG | + |
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Preference number: 1 (lower is better) Translates to: FLSGCSSVEVWSSSC*RVSVPTGKEHQGQV Trigger: CACTTGTCCTTGGTGCTCCTTGCCTGTTGGAACTGACACACGCCAGCAGGAGCTGGACCACACCTCCACAGAACTACACCCAGATAGAAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| 3UTR-3UTR GCA 90 bp | TCACACCTGACCCTGAGGGAACTAGAGCCTTTCTATCTGGGTGTAGTTCTGTGGGTGTGGTCCAGCTCCTaGTGGCGTGTGTCAGTTCCA | + |
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Preference number: 2 (lower is better) Translates to: SHLTLRELEPFYLGVVLWVWSSS*WRVSVP Trigger: TGGAACTGACACACGCCAGCAGGAGCTGGACCACAC...CCACAGAACTACACCCAGATAGAAAGGCTCTAGTTCCCTCAGGGTCAGGTGTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| 3UTR-3UTR CCA 90 bp | AAGATCACACCTGACCCTGAGGGAACTAGAGCCTTTCTATCTGGGTGTAGTTCTTGGTCCAGCTCCTGCTaGCGTGTGTCAGTTCCAACA | + |
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Preference number: 2 (lower is better) Translates to: KITPDPEGTRAFLSGCSSWSSSC*RVSVPT Trigger: TGTTGGAACTGACACACGCCAGCAGGAGCTGGACCA...AGAACTACACCCAGATAGAAAGGCTCTAGTTCCCTCAGGGTCAGGTGTGATCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| 3UTR GCA 72 bp | TCTGGGTGTAGTTCTGTGGAGGTGTGGTCCAGCTCCTaGTGGCGTGTGTCAGTTCCAACAGGCAAGGAGCAC | + |
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Preference number: 3 (lower is better) Translates to: SGCSSVEVWSSS*WRVSVPTGKEH Trigger: GTGCTCCTTGCCTGTTGGAACTGACACACGCCAGCAGGAGCTGGACCACACCTCCACAGAACTACACCCAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| 3UTR CCA 72 bp | GGGTGTAGTTCTGTGGAGGTGTGGTCCAGCTCCTGCTaGCGTGTGTCAGTTCCAACAGGCAAGGAGCACCAA | + |
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Preference number: 3 (lower is better) Translates to: GCSSVEVWSSSC*RVSVPTGKEHQ Trigger: TTGGTGCTCCTTGCCTGTTGGAACTGACACACGCCAGCAGGAGCTGGACCACACCTCCACAGAACTACACCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| 3UTR CCA 72 bp | AGGGAACTAGAGCCTTTCTATCTGGGTGTAGTTCTGTaGAGGTGTGGTCCAGCTCCTGCTGGCGTGTGTCAG | + |
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Preference number: 3 (lower is better) Translates to: RELEPFYLGVVL*RCGPAPAGVCQ Trigger: CTGACACACGCCAGCAGGAGCTGGACCACACCTCCACAGAACTACACCCAGATAGAAAGGCTCTAGTTCCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| 3UTR CCA 72 bp | AGAGCCTTTCTATCTGGGTGTAGTTCTGTGGAGGTGTaGTCCAGCTCCTGCTGGCGTGTGTCAGTTCCAACA | + |
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Preference number: 3 (lower is better) Translates to: RAFLSGCSSVEV*SSSCWRVSVPT Trigger: TGTTGGAACTGACACACGCCAGCAGGAGCTGGACCACACCTCCACAGAACTACACCCAGATAGAAAGGCTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| 3UTR TCA 72 bp | TGCTGTTCTAAATCCCATCTCAGATACTGTTTGGGATaGAGATCACACCTGACCCTGAGGGAACTAGAGCCT | + |
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Preference number: 3 (lower is better) Translates to: CCSKSHLRYCLG*RSHLTLRELEP Trigger: AGGCTCTAGTTCCCTCAGGGTCAGGTGTGATCTTCATCCCAAACAGTATCTGAGATGGGATTTAGAACAGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS-3UTR GCA 90 bp | GGAACTAGAGCCTTTCTATCTGGGTGTAGTTCTGTGGAGGTGTGGTCCAGCTCCCTGTCTCCAGCCGCCTaGTTCCCTCACCGCCAGGGG | + |
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Preference number: 4 (lower is better) Translates to: GTRAFLSGCSSVEVWSSSLSPAA*FPHRQG Trigger: CCCCTGGCGGTGAGGGAAGCAGGCGGCTGGAGACAG...GGAGCTGGACCACACCTCCACAGAACTACACCCAGATAGAAAGGCTCTAGTTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS-3UTR GCA 90 bp | GACCCTGAGGGAACTAGAGCCTTTCTATCTGGGTGTAGTTCTGTGGAGGTGTGGAGACAGCGTCCCCGCTaGGCAGGGCCAGCTGTCTCC | + |
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Preference number: 4 (lower is better) Translates to: DPEGTRAFLSGCSSVEVWRQRPR*AGPAVS Trigger: GGAGACAGCTGGCCCTGCGCAGCGGGGACGCTGTCT...CCACACCTCCACAGAACTACACCCAGATAGAAAGGCTCTAGTTCCCTCAGGGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS-3UTR CCA 90 bp | TTTCTATCTGGGTGTAGTTCTGTGGAGGTGTGGTCCAGCTCCTGCTGGCGTGTGAGGCTCCCTGGGCCCTaGCTGCTTCCTCTTGCACCG | + |
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Preference number: 4 (lower is better) Translates to: FLSGCSSVEVWSSSCWRVRLPGP*LLPLAP Trigger: CGGTGCAAGAGGAAGCAGCCAGGGCCCAGGGAGCCT...CACACGCCAGCAGGAGCTGGACCACACCTCCACAGAACTACACCCAGATAGAAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS-3UTR TCA 90 bp | GGAACTAGAGCCTTTCTATCTGGGTGTAGTTCTGTGGAGGTGTGGTCCAGCTCCGCACTGGGCACCGAATaGTGCGGGTCCAGGCTGTAC | + |
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Preference number: 4 (lower is better) Translates to: GTRAFLSGCSSVEVWSSSALGTE*CGSRLY Trigger: GTACAGCCTGGACCCGCATCATTCGGTGCCCAGTGC...GGAGCTGGACCACACCTCCACAGAACTACACCCAGATAGAAAGGCTCTAGTTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS-3UTR TCA 90 bp | TTTCTATCTGGGTGTAGTTCTGTGGAGGTGTGGTCCAGCTCCTGCTGGCGTGTGGGTCCTGTTTGCTGTTaGGTCCCGGTAGGGACTCCG | + |
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Preference number: 4 (lower is better) Translates to: FLSGCSSVEVWSSSCWRVGPVCC*VPVGTP Trigger: CGGAGTCCCTACCGGGACTCAACAGCAAACAGGACC...CACACGCCAGCAGGAGCTGGACCACACCTCCACAGAACTACACCCAGATAGAAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS-3UTR CCA 90 bp | TTCTATCTGGGTGTAGTTCTGTGGAGGTGTGGTCCAGCTCCTGCTGGCGTGTGTGCCCTGATGTTGTTCTaGCCAAAGCCTGTGGCCCCC | + |
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Preference number: 4 (lower is better) Translates to: FYLGVVLWRCGPAPAGVCALMLF*PKPVAP Trigger: GGGGGCCACAGGCTTTGGCCAGAACAACATCAGGGC...ACACACGCCAGCAGGAGCTGGACCACACCTCCACAGAACTACACCCAGATAGAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS-3UTR TCA 90 bp | GAGGGAACTAGAGCCTTTCTATCTGGGTGTAGTTCTGTGGAGGTGTGGTCCAGCTGCAAGGCAGAGGTCTaGACCCGGGCAGGAAGGATC | + |
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Preference number: 4 (lower is better) Translates to: EGTRAFLSGCSSVEVWSSCKAEV*TRAGRI Trigger: GATCCTTCCTGCCCGGGTTCAGACCTCTGCCTTGCA...GCTGGACCACACCTCCACAGAACTACACCCAGATAGAAAGGCTCTAGTTCCCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS-3UTR GCA 90 bp | TCACACCTGACCCTGAGGGAACTAGAGCCTTTCTATCTGGGTGTAGTTCTGTGGGGGAGCTGCCGGAGGTaGAGGCCAAGGTCAAGTGGT | + |
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Preference number: 4 (lower is better) Translates to: SHLTLRELEPFYLGVVLWGSCRR*RPRSSG Trigger: ACCACTTGACCTTGGCCTGCACCTCCGGCAGCTCCC...CCACAGAACTACACCCAGATAGAAAGGCTCTAGTTCCCTCAGGGTCAGGTGTGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS-3UTR CCA 90 bp | GGAACTAGAGCCTTTCTATCTGGGTGTAGTTCTGTGGAGGTGTGGTCCAGCTCCCTCCGGATCCTCACCTaGGCTCAGCGGCAAGTGATG | + |
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Preference number: 4 (lower is better) Translates to: GTRAFLSGCSSVEVWSSSLRILT*AQRQVM Trigger: CATCACTTGCCGCTGAGCCCAGGTGAGGATCCGGAG...GGAGCTGGACCACACCTCCACAGAACTACACCCAGATAGAAAGGCTCTAGTTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS-3UTR GCA 90 bp | GACCCTGAGGGAACTAGAGCCTTTCTATCTGGGTGTAGTTCTGTGGAGGTGTGGTCCAGCAGGATTCCCTaGCGTTCTAGAAGGCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: DPEGTRAFLSGCSSVEVWSSRIP*RSRRPG Trigger: GCCTGGCCTTCTAGAACGGCAGGGAATCCTGCTGGA...CCACACCTCCACAGAACTACACCCAGATAGAAAGGCTCTAGTTCCCTCAGGGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS-3UTR CCA 90 bp | AAGATCACACCTGACCCTGAGGGAACTAGAGCCTTTCTATCTGGGTGTAGTTCTGTCCAGGCTGTACAGTaGCTCCTGGGGCCCGGTACC | + |
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Preference number: 4 (lower is better) Translates to: KITPDPEGTRAFLSGCSSVQAVQ*LLGPGT Trigger: GGTACCGGGCCCCAGGAGCCACTGTACAGCCTGGAC...AGAACTACACCCAGATAGAAAGGCTCTAGTTCCCTCAGGGTCAGGTGTGATCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS-3UTR GCA 90 bp | AGATCACACCTGACCCTGAGGGAACTAGAGCCTTTCTATCTGGGTGTAGTTCTGGGTGGCTGTGCCCTGTaGATCTCTCACCCTAGTGGG | + |
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Preference number: 4 (lower is better) Translates to: RSHLTLRELEPFYLGVVLGGCAL*ISHPSG Trigger: CCCACTAGGGTGAGAGATGCACAGGGCACAGCCACC...CAGAACTACACCCAGATAGAAAGGCTCTAGTTCCCTCAGGGTCAGGTGTGATCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS-3UTR GCA 90 bp | TTCTATCTGGGTGTAGTTCTGTGGAGGTGTGGTCCAGCTCCTGCTGGCGTGTGTTCCTCTTGCACCGACTaGCATAGTGCCCTGATGTTG | + |
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Preference number: 4 (lower is better) Translates to: FYLGVVLWRCGPAPAGVCSSCTD*HSALML Trigger: CAACATCAGGGCACTATGGCAGTCGGTGCAAGAGGA...ACACACGCCAGCAGGAGCTGGACCACACCTCCACAGAACTACACCCAGATAGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS-3UTR CCA 90 bp | GACCCTGAGGGAACTAGAGCCTTTCTATCTGGGTGTAGTTCTGTGGAGGTGTGGCGAAGCACAGGTTCGTaGCACTGGGCACCGAATGAT | + |
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Preference number: 4 (lower is better) Translates to: DPEGTRAFLSGCSSVEVWRSTGS*HWAPND Trigger: ATCATTCGGTGCCCAGTGCCACGAACCTGTGCTTCG...CCACACCTCCACAGAACTACACCCAGATAGAAAGGCTCTAGTTCCCTCAGGGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS-3UTR GCA 90 bp | AAGATCACACCTGACCCTGAGGGAACTAGAGCCTTTCTATCTGGGTGTAGTTCTTCCCTCGCTAGGGGCTaGCCAGCTGGTACATGGAAA | + |
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Preference number: 4 (lower is better) Translates to: KITPDPEGTRAFLSGCSSSLARG*PAGTWK Trigger: TTTCCATGTACCAGCTGGGCAGCCCCTAGCGAGGGA...AGAACTACACCCAGATAGAAAGGCTCTAGTTCCCTCAGGGTCAGGTGTGATCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS-3UTR CCA 90 bp | ATCACACCTGACCCTGAGGGAACTAGAGCCTTTCTATCTGGGTGTAGTTCTGTGTCTGGCCAAAGCCTGTaGCCCCCTGTCTCTGAATCA | + |
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Preference number: 4 (lower is better) Translates to: ITPDPEGTRAFLSGCSSVSGQSL*PPVSES Trigger: TGATTCAGAGACAGGGGGCCACAGGCTTTGGCCAGA...CACAGAACTACACCCAGATAGAAAGGCTCTAGTTCCCTCAGGGTCAGGTGTGAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS-3UTR TCA 90 bp | TTCTATCTGGGTGTAGTTCTGTGGAGGTGTGGTCCAGCTCCTGCTGGCGTGTGTCGAAGAGGGACTTGGTaGAGACCTGAAGCAAAAATT | + |
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Preference number: 4 (lower is better) Translates to: FYLGVVLWRCGPAPAGVCRRGTW*RPEAKI Trigger: AATTTTTGCTTCAGGTCTTCACCAAGTCCCTCTTCG...ACACACGCCAGCAGGAGCTGGACCACACCTCCACAGAACTACACCCAGATAGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS-3UTR GCA 90 bp | CCTAGACATTTTAGGGGTTCTTGCTGTTCTAAATCCCATCTCAGATACTGTTTGTCCCTGGGCCCTGGCTaGTTCCTCTTGCACCGACTG | + |
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Preference number: 4 (lower is better) Translates to: PRHFRGSCCSKSHLRYCLSLGPG*FLLHRL Trigger: CAGTCGGTGCAAGAGGAAGCAGCCAGGGCCCAGGGA...CAAACAGTATCTGAGATGGGATTTAGAACAGCAAGAACCCCTAAAATGTCTAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS-3UTR CCA 90 bp | ATCACACCTGACCCTGAGGGAACTAGAGCCTTTCTATCTGGGTGTAGTTCTGTGAAGCCTAGGCAGTCGTaGAACCAGCGCATAAGCATA | + |
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Preference number: 4 (lower is better) Translates to: ITPDPEGTRAFLSGCSSVKPRQS*NQRISI Trigger: TATGCTTATGCGCTGGTTCCACGACTGCCTAGGCTT...CACAGAACTACACCCAGATAGAAAGGCTCTAGTTCCCTCAGGGTCAGGTGTGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS-3UTR GCA 90 bp | CCTAGACATTTTAGGGGTTCTTGCTGTTCTAAATCCCATCTCAGATACTGTTTGCTGTGTAGGTGGCTGTaGCCTGTGCATCTCTCACCC | + |
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Preference number: 4 (lower is better) Translates to: PRHFRGSCCSKSHLRYCLLCRWL*PVHLSP Trigger: GGGTGAGAGATGCACAGGGCACAGCCACCTACACAG...CAAACAGTATCTGAGATGGGATTTAGAACAGCAAGAACCCCTAAAATGTCTAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS-3UTR CCA 90 bp | TTGATATTACCTAGACATTTTAGGGGTTCTTGCTGTTCTAAATCCCATCTCAGACTCACCGCCAGGGGCTaGAAGCCGAAGACACGATGT | + |
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Preference number: 4 (lower is better) Translates to: LILPRHFRGSCCSKSHLRLTARG*KPKTRC Trigger: ACATCGTGTCTTCGGCTTCCAGCCCCTGGCGGTGAG...TCTGAGATGGGATTTAGAACAGCAAGAACCCCTAAAATGTCTAGGTAATATCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS-3UTR CCA 90 bp | TTGATATTACCTAGACATTTTAGGGGTTCTTGCTGTTCTAAATCCCATCTCAGACAGGCCAAGGTCAAGTaGTCCACGTGGCTGACCCAA | + |
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Preference number: 4 (lower is better) Translates to: LILPRHFRGSCCSKSHLRQAKVK*STWLTQ Trigger: TTGGGTCAGCCACGTGGACCACTTGACCTTGGCCTG...TCTGAGATGGGATTTAGAACAGCAAGAACCCCTAAAATGTCTAGGTAATATCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS-3UTR CCA 90 bp | TTGATATTACCTAGACATTTTAGGGGTTCTTGCTGTTCTAAATCCCATCTCAGAAGAAATTGCTCTACCTaGTCCTGTTTGCTGTTGAGT | + |
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Preference number: 4 (lower is better) Translates to: LILPRHFRGSCCSKSHLRRNCST*SCLLLS Trigger: ACTCAACAGCAAACAGGACCAGGTAGAGCAATTTCT...TCTGAGATGGGATTTAGAACAGCAAGAACCCCTAAAATGTCTAGGTAATATCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS-3UTR TCA 90 bp | ATATTACCTAGACATTTTAGGGGTTCTTGCTGTTCTAAATCCCATCTCAGATACGACTTGGTGAAGACCTaGAGCAAAAATTCGTCTTTA | + |
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Preference number: 4 (lower is better) Translates to: ILPRHFRGSCCSKSHLRYDLVKT*SKNSSL Trigger: TAAAGACGAATTTTTGCTTCAGGTCTTCACCAAGTC...GTATCTGAGATGGGATTTAGAACAGCAAGAACCCCTAAAATGTCTAGGTAATAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS CCA 90 bp | CACTGTGTAGGTGGCTGTGCCCTGTGCATCTCTCACCCTAGTGGGTaGTACCGGCATGATGCAGCCGCGAGCCGCCAGCGCGCGGGCGGC | + |
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Preference number: 5 (lower is better) Translates to: HCVGGCALCISHPSG*YRHDAAASRQRAGG Trigger: GCCGCCCGCGCGCTGGCGGCTCGCGGCTGCATCATGCCGGTACCACCCACTAGGGTGAGAGATGCACAGGGCACAGCCACCTACACAGTG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS GCA 90 bp | CCTGGGGCCCGGTACCCTCATTCACTAGAAAGACAGCGTCCCCGCTaGGCAGGGCCAGCTGTCTCCAGCCGCCTGCTTCCCTCACCGCCA | + |
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Preference number: 5 (lower is better) Translates to: PGARYPHSLERQRPR*AGPAVSSRLLPSPP Trigger: TGGCGGTGAGGGAAGCAGGCGGCTGGAGACAGCTGGCCCTGCGCAGCGGGGACGCTGTCTTTCTAGTGAATGAGGGTACCGGGCCCCAGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS CCA 90 bp | AGGGCCAGCTGTCTCCAGCCGCCTGCTTCCCTCACCGCCAGGGGCTaGAAGCCGAAGACACGATGTAGGTCCCTCGCTAGGGGCTGCCCA | + |
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Preference number: 5 (lower is better) Translates to: RASCLQPPASLTARG*KPKTRCRSLARGCP Trigger: TGGGCAGCCCCTAGCGAGGGACCTACATCGTGTCTTCGGCTTCCAGCCCCTGGCGGTGAGGGAAGCAGGCGGCTGGAGACAGCTGGCCCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS CCA 90 bp | CGCGGGCGGCGCCGTCCACATCCTCCACGTCGAAGCACAGGTTCGTaGCACTGGGCACCGAATGATGCGGGTCCAGGCTGTACAGTGGCT | + |
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Preference number: 5 (lower is better) Translates to: RGRRRPHPPRRSTGS*HWAPNDAGPGCTVA Trigger: AGCCACTGTACAGCCTGGACCCGCATCATTCGGTGCCCAGTGCCACGAACCTGTGCTTCGACGTGGAGGATGTGGACGGCGCCGCCCGCG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS CCA 90 bp | CGGCGCCGTCCACATCCTCCACGTCGAAGCACAGGTTCGTGGCACTaGGCACCGAATGATGCGGGTCCAGGCTGTACAGTGGCTCCTGGG | + |
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Preference number: 5 (lower is better) Translates to: RRRPHPPRRSTGSWH*APNDAGPGCTVAPG Trigger: CCCAGGAGCCACTGTACAGCCTGGACCCGCATCATTCGGTGCCCAGTGCCACGAACCTGTGCTTCGACGTGGAGGATGTGGACGGCGCCG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS CCA 90 bp | ATAGGGGAGCTGCCGGAGGTGCAGGCCAAGGTCAAGTGGTCCACGTaGCTGACCCAACCTGGGCCAGGTGTGCAAGGCAGAGGTCTGAAC | + |
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Preference number: 5 (lower is better) Translates to: IGELPEVQAKVKWST*LTQPGPGVQGRGLN Trigger: GTTCAGACCTCTGCCTTGCACACCTGGCCCAGGTTGGGTCAGCCACGTGGACCACTTGACCTTGGCCTGCACCTCCGGCAGCTCCCCTAT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS CCA 90 bp | CGCATAAGCATAGGGGAGCTGCCGGAGGTGCAGGCCAAGGTCAAGTaGTCCACGTGGCTGACCCAACCTGGGCCAGGTGTGCAAGGCAGA | + |
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Preference number: 5 (lower is better) Translates to: RISIGELPEVQAKVK*STWLTQPGPGVQGR Trigger: TCTGCCTTGCACACCTGGCCCAGGTTGGGTCAGCCACGTGGACCACTTGACCTTGGCCTGCACCTCCGGCAGCTCCCCTATGCTTATGCG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS TCA 90 bp | CCTGGGCCCTGGCTGCTTCCTCTTGCACCGACTGCCATAGTGCCCTaGTGTTGTTCTGGCCAAAGCCTGTGGCCCCCTGTCTCTGAATCA | + |
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Preference number: 5 (lower is better) Translates to: PGPWLLPLAPTAIVP*CCSGQSLWPPVSES Trigger: TGATTCAGAGACAGGGGGCCACAGGCTTTGGCCAGAACAACATCAGGGCACTATGGCAGTCGGTGCAAGAGGAAGCAGCCAGGGCCCAGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS TCA 90 bp | CCCCATGCCGGGTTAGAAATTGCTCTACCTGGTCCTGTTTGCTGTTaGGTCCCGGTAGGGACTCCGCCAGCACGAGGGTGGGGACAGTAT | + |
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Preference number: 5 (lower is better) Translates to: PHAGLEIALPGPVCC*VPVGTPPARGWGQY Trigger: ATACTGTCCCCACCCTCGTGCTGGCGGAGTCCCTACCGGGACTCAACAGCAAACAGGACCAGGTAGAGCAATTTCTAACCCGGCATGGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS GCA 90 bp | CTAGAAGGCCAGGCTTGTGCCCTGCGGCTAGAATTTGTTCTTCTTTaGCGGGCTGCTGGTAATAAGCTTCAGGAGGAGTCAGAAGCCGGC | + |
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Preference number: 5 (lower is better) Translates to: LEGQACALRLEFVLL*RAAGNKLQEESEAG Trigger: GCCGGCTTCTGACTCCTCCTGAAGCTTATTACCAGCAGCCCGGCAAAGAAGAACAAATTCTAGCCGCAGGGCACAAGCCTGGCCTTCTAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS-3UTR CAA 90 bp | GACCCTGAGGGAACTAGAGCCTTTCTATCTGGGTGTAGTTCTGTGGAGGTGTGGTCTACCTGGTCCTGTTaGCTGTTGAGTCCCGGTAGG | + |
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Preference number: 5 (lower is better) Translates to: DPEGTRAFLSGCSSVEVWSTWSC*LLSPGR Trigger: CCTACCGGGACTCAACAGCAAACAGGACCAGGTAGA...CCACACCTCCACAGAACTACACCCAGATAGAAAGGCTCTAGTTCCCTCAGGGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS-3UTR CAA 90 bp | GACCCTGAGGGAACTAGAGCCTTTCTATCTGGGTGTAGTTCTGTGGAGGTGTGGTCTAGAAGGCCAGGCTaGTGCCCTGCGGCTAGAATT | + |
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Preference number: 5 (lower is better) Translates to: DPEGTRAFLSGCSSVEVWSRRPG*CPAARI Trigger: AATTCTAGCCGCAGGGCACAAGCCTGGCCTTCTAGA...CCACACCTCCACAGAACTACACCCAGATAGAAAGGCTCTAGTTCCCTCAGGGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS-3UTR CAA 90 bp | ATATTACCTAGACATTTTAGGGGTTCTTGCTGTTCTAAATCCCATCTCAGATACCATAGTGCCCTGATGTaGTTCTGGCCAAAGCCTGTG | + |
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Preference number: 5 (lower is better) Translates to: ILPRHFRGSCCSKSHLRYHSALM*FWPKPV Trigger: CACAGGCTTTGGCCAGAACAACATCAGGGCACTATG...GTATCTGAGATGGGATTTAGAACAGCAAGAACCCCTAAAATGTCTAGGTAATAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS GCA 72 bp | GTCCCCGCTGCGCAGGGCCAGCTGTCTCCAGCCGCCTaGTTCCCTCACCGCCAGGGGCTGGAAGCCGAAGAC | + |
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Preference number: 6 (lower is better) Translates to: VPAAQGQLSPAA*FPHRQGLEAED Trigger: GTCTTCGGCTTCCAGCCCCTGGCGGTGAGGGAAGCAGGCGGCTGGAGACAGCTGGCCCTGCGCAGCGGGGAC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS CCA 72 bp | GGTGGCTGTGCCCTGTGCATCTCTCACCCTAGTGGGTaGTACCGGCATGATGCAGCCGCGAGCCGCCAGCGC | + |
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Preference number: 6 (lower is better) Translates to: GGCALCISHPSG*YRHDAAASRQR Trigger: GCGCTGGCGGCTCGCGGCTGCATCATGCCGGTACCACCCACTAGGGTGAGAGATGCACAGGGCACAGCCACC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS GCA 72 bp | CGGTACCCTCATTCACTAGAAAGACAGCGTCCCCGCTaGGCAGGGCCAGCTGTCTCCAGCCGCCTGCTTCCC | + |
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Preference number: 6 (lower is better) Translates to: RYPHSLERQRPR*AGPAVSSRLLP Trigger: GGGAAGCAGGCGGCTGGAGACAGCTGGCCCTGCGCAGCGGGGACGCTGTCTTTCTAGTGAATGAGGGTACCG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS CCA 72 bp | TGTCTCCAGCCGCCTGCTTCCCTCACCGCCAGGGGCTaGAAGCCGAAGACACGATGTAGGTCCCTCGCTAGG | + |
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Preference number: 6 (lower is better) Translates to: CLQPPASLTARG*KPKTRCRSLAR Trigger: CCTAGCGAGGGACCTACATCGTGTCTTCGGCTTCCAGCCCCTGGCGGTGAGGGAAGCAGGCGGCTGGAGACA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS CCA 72 bp | CTGCCGGAGGTGCAGGCCAAGGTCAAGTGGTCCACGTaGCTGACCCAACCTGGGCCAGGTGTGCAAGGCAGA | + |
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Preference number: 6 (lower is better) Translates to: LPEVQAKVKWST*LTQPGPGVQGR Trigger: TCTGCCTTGCACACCTGGCCCAGGTTGGGTCAGCCACGTGGACCACTTGACCTTGGCCTGCACCTCCGGCAG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS CCA 72 bp | CGCCGTCCACATCCTCCACGTCGAAGCACAGGTTCGTaGCACTGGGCACCGAATGATGCGGGTCCAGGCTGT | + |
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Preference number: 6 (lower is better) Translates to: RRPHPPRRSTGS*HWAPNDAGPGC Trigger: ACAGCCTGGACCCGCATCATTCGGTGCCCAGTGCCACGAACCTGTGCTTCGACGTGGAGGATGTGGACGGCG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS CCA 72 bp | CCACATCCTCCACGTCGAAGCACAGGTTCGTGGCACTaGGCACCGAATGATGCGGGTCCAGGCTGTACAGTG | + |
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Preference number: 6 (lower is better) Translates to: PHPPRRSTGSWH*APNDAGPGCTV Trigger: CACTGTACAGCCTGGACCCGCATCATTCGGTGCCCAGTGCCACGAACCTGTGCTTCGACGTGGAGGATGTGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS CAA 90 bp | CCCCCATGCCGGGTTAGAAATTGCTCTACCTGGTCCTGTTTGCTGTaGAGTCCCGGTAGGGACTCCGCCAGCACGAGGGTGGGGACAGTA | + |
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Preference number: 6 (lower is better) Translates to: PPCRVRNCSTWSCLL*SPGRDSASTRVGTV Trigger: TACTGTCCCCACCCTCGTGCTGGCGGAGTCCCTACCGGGACTCAACAGCAAACAGGACCAGGTAGAGCAATTTCTAACCCGGCATGGGGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS TCA 72 bp | TGGCTGCTTCCTCTTGCACCGACTGCCATAGTGCCCTaGTGTTGTTCTGGCCAAAGCCTGTGGCCCCCTGTC | + |
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Preference number: 6 (lower is better) Translates to: WLLPLAPTAIVP*CCSGQSLWPPV Trigger: GACAGGGGGCCACAGGCTTTGGCCAGAACAACATCAGGGCACTATGGCAGTCGGTGCAAGAGGAAGCAGCCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS GCA 72 bp | CGGAGAGCTGAGCACTGTGTAGGTGGCTGTGCCCTGTaGATCTCTCACCCTAGTGGGTGGTACCGGCATGAT | + |
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Preference number: 6 (lower is better) Translates to: RRAEHCVGGCAL*ISHPSGWYRHD Trigger: ATCATGCCGGTACCACCCACTAGGGTGAGAGATGCACAGGGCACAGCCACCTACACAGTGCTCAGCTCTCCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS TCA 72 bp | GGGTTAGAAATTGCTCTACCTGGTCCTGTTTGCTGTTaGGTCCCGGTAGGGACTCCGCCAGCACGAGGGTGG | + |
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Preference number: 6 (lower is better) Translates to: GLEIALPGPVCC*VPVGTPPARGW Trigger: CCACCCTCGTGCTGGCGGAGTCCCTACCGGGACTCAACAGCAAACAGGACCAGGTAGAGCAATTTCTAACCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS CAA 72 bp | CGGGTTAGAAATTGCTCTACCTGGTCCTGTTTGCTGTaGAGTCCCGGTAGGGACTCCGCCAGCACGAGGGTG | + |
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Preference number: 6 (lower is better) Translates to: RVRNCSTWSCLL*SPGRDSASTRV Trigger: CACCCTCGTGCTGGCGGAGTCCCTACCGGGACTCAACAGCAAACAGGACCAGGTAGAGCAATTTCTAACCCG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS CAA 72 bp | CCATGCCGGGTTAGAAATTGCTCTACCTGGTCCTGTTaGCTGTTGAGTCCCGGTAGGGACTCCGCCAGCACG | + |
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Preference number: 6 (lower is better) Translates to: PCRVRNCSTWSC*LLSPGRDSAST Trigger: CGTGCTGGCGGAGTCCCTACCGGGACTCAACAGCAAACAGGACCAGGTAGAGCAATTTCTAACCCGGCATGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS CAA 90 bp | TTATCACCATCCAGCAGGATTCCCTGCCGTTCTAGAAGGCCAGGCTaGTGCCCTGCGGCTAGAATTTGTTCTTCTTTGCCGGGCTGCTGG | + |
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Preference number: 6 (lower is better) Translates to: LSPSSRIPCRSRRPG*CPAARICSSLPGCW Trigger: CCAGCAGCCCGGCAAAGAAGAACAAATTCTAGCCGCAGGGCACAAGCCTGGCCTTCTAGAACGGCAGGGAATCCTGCTGGATGGTGATAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS GCA 72 bp | AAAAATTCGTCTTTATCACCATCCAGCAGGATTCCCTaGCGTTCTAGAAGGCCAGGCTTGTGCCCTGCGGCT | + |
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Preference number: 6 (lower is better) Translates to: KNSSLSPSSRIP*RSRRPGLCPAA Trigger: AGCCGCAGGGCACAAGCCTGGCCTTCTAGAACGGCAGGGAATCCTGCTGGATGGTGATAAAGACGAATTTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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| CDS TCA 72 bp | CCAGGAAGAAAGTGTCTTCGGCGAAGAGGGACTTGGTaGAGACCTGAAGCAAAAATTCGTCTTTATCACCAT | + |
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Preference number: 6 (lower is better) Translates to: PGRKCLRRRGTW*RPEAKIRLYHH Trigger: ATGGTGATAAAGACGAATTTTTGCTTCAGGTCTTCACCAAGTCCCTCTTCGCCGAAGACACTTTCTTCCTGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055436.5 |
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