Pregenerated sensors for HPCAL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000071379Ensembl transcript IDs: ENSMUST00000071858.5
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGGAGGAGGAGGAAGCCACAGTTGGCCAGGTCAGGAGGGTGCGATTaGTGCCTGGACCCAGGTCCTGGGAGAGCAGGAGAGATCACGGAG | + |
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Preference number: 1 (lower is better) Translates to: WRRRKPQLARSGGCD*CLDPGPGRAGEITE Trigger: CTCCGTGATCTCTCCTGCTCTCCCAGGACCTGGGTCCAGGCAGCAATCGCACCCTCCTGACCTGGCCAACTGTGGCTTCCTCCTCCTCCA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| 3UTR GCA 90 bp | AGGAGGAGGAAGCCACAGTTGGCCAGGTCAGGAGGGTGCGATTGCTaGCTGGACCCAGGTCCTGGGAGAGCAGGAGAGATCACGGAGGAA | + |
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Preference number: 1 (lower is better) Translates to: RRRKPQLARSGGCDC*LDPGPGRAGEITEE Trigger: TTCCTCCGTGATCTCTCCTGCTCTCCCAGGACCTGGGTCCAGGCAGCAATCGCACCCTCCTGACCTGGCCAACTGTGGCTTCCTCCTCCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| 3UTR GCA 90 bp | CTGAACTGGAGGAGGAGGAAGCCACAGTTGGCCAGGTCAGGAGGGTaGGATTGCTGCCTGGACCCAGGTCCTGGGAGAGCAGGAGAGATC | + |
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Preference number: 1 (lower is better) Translates to: LNWRRRKPQLARSGG*DCCLDPGPGRAGEI Trigger: GATCTCTCCTGCTCTCCCAGGACCTGGGTCCAGGCAGCAATCGCACCCTCCTGACCTGGCCAACTGTGGCTTCCTCCTCCTCCAGTTCAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| 3UTR TCA 90 bp | CCAGGCCCTCTGTGGGCAGGAAGGAGCCCTACAGCCGAGAACACTTaGACCATTGGAAGGAGCCAGCCTGAACTGGAGGAGGAGGAAGCC | + |
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Preference number: 1 (lower is better) Translates to: PGPLWAGRSPTAENT*TIGRSQPELEEEEA Trigger: GGCTTCCTCCTCCTCCAGTTCAGGCTGGCTCCTTCCAATGGTTCAAGTGTTCTCGGCTGTAGGGCTCCTTCCTGCCCACAGAGGGCCTGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| 3UTR CCA 90 bp | GTTGGCCAGGTCAGGAGGGTGCGATTGCTGCCTGGACCCAGGTCCTaGGAGAGCAGGAGAGATCACGGAGGAATCCACTTTTACAAGCAA | + |
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Preference number: 1 (lower is better) Translates to: VGQVRRVRLLPGPRS*ESRRDHGGIHFYKQ Trigger: TTGCTTGTAAAAGTGGATTCCTCCGTGATCTCTCCTGCTCTCCCAGGACCTGGGTCCAGGCAGCAATCGCACCCTCCTGACCTGGCCAAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| 3UTR CCA 90 bp | CTACAGCCGAGAACACTTGAACCATTGGAAGGAGCCAGCCTGAACTaGAGGAGGAGGAAGCCACAGTTGGCCAGGTCAGGAGGGTGCGAT | + |
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Preference number: 1 (lower is better) Translates to: LQPRTLEPLEGASLN*RRRKPQLARSGGCD Trigger: ATCGCACCCTCCTGACCTGGCCAACTGTGGCTTCCTCCTCCTCCAGTTCAGGCTGGCTCCTTCCAATGGTTCAAGTGTTCTCGGCTGTAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| 3UTR GCA 90 bp | TATGCCAGACCAATCGACAGGAAGGACAGAGCACACAGAAACACCTaGATTTACAGGACGGAGGCAGATGTCCACAGCCCTGGGCATGCA | + |
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Preference number: 1 (lower is better) Translates to: YARPIDRKDRAHRNT*IYRTEADVHSPGHA Trigger: TGCATGCCCAGGGCTGTGGACATCTGCCTCCGTCCTGTAAATGCAGGTGTTTCTGTGTGCTCTGTCCTTCCTGTCGATTGGTCTGGCATA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| 3UTR CCA 90 bp | ATATACATGCAAGCGGCTTTGGTCAGAGAAAATGAACAAGGGAGGTaGAGCCATGCACAGGAAGGGCTTGCCTGTCTACTCTCCATCTTT | + |
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Preference number: 1 (lower is better) Translates to: IYMQAALVRENEQGR*SHAQEGLACLLSIF Trigger: AAAGATGGAGAGTAGACAGGCAAGCCCTTCCTGTGCATGGCTCCACCTCCCTTGTTCATTTTCTCTGACCAAAGCCGCTTGCATGTATAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| 3UTR TCA 90 bp | GAGAGCAGGAGAGATCACGGAGGAATCCACTTTTACAAGCAAAGCTaGACATGGCAGGCCAAGCCTGTGTTTCTCACAAATGTCCAAAAG | + |
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Preference number: 1 (lower is better) Translates to: ESRRDHGGIHFYKQS*TWQAKPVFLTNVQK Trigger: CTTTTGGACATTTGTGAGAAACACAGGCTTGGCCTGCCATGTTCAGCTTTGCTTGTAAAAGTGGATTCCTCCGTGATCTCTCCTGCTCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| 3UTR CCA 90 bp | TATATTAAAAGTAAGGATACCACGGTATATACATGCAAGCGGCTTTaGTCAGAGAAAATGAACAAGGGAGGTGGAGCCATGCACAGGAAG | + |
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Preference number: 1 (lower is better) Translates to: YIKSKDTTVYTCKRL*SEKMNKGGGAMHRK Trigger: CTTCCTGTGCATGGCTCCACCTCCCTTGTTCATTTTCTCTGACCAAAGCCGCTTGCATGTATATACCGTGGTATCCTTACTTTTAATATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| 3UTR GCA 90 bp | ACATATAACTCATATATTAAAAGTAAGGATACCACGGTATATACATaGAAGCGGCTTTGGTCAGAGAAAATGAACAAGGGAGGTGGAGCC | + |
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Preference number: 1 (lower is better) Translates to: TYNSYIKSKDTTVYT*KRLWSEKMNKGGGA Trigger: GGCTCCACCTCCCTTGTTCATTTTCTCTGACCAAAGCCGCTTGCATGTATATACCGTGGTATCCTTACTTTTAATATATGAGTTATATGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| 3UTR CAA 90 bp | CTGGAGGAGGAGGAAGCCACAGTTGGCCAGGTCAGGAGGGTGCGATaGCTGCCTGGACCCAGGTCCTGGGAGAGCAGGAGAGATCACGGA | + |
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Preference number: 2 (lower is better) Translates to: LEEEEATVGQVRRVR*LPGPRSWESRRDHG Trigger: TCCGTGATCTCTCCTGCTCTCCCAGGACCTGGGTCCAGGCAGCAATCGCACCCTCCTGACCTGGCCAACTGTGGCTTCCTCCTCCTCCAG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| 3UTR-3UTR GCA 90 bp | TGCACAGGAAGGGCTTGCCTGTCTACTCTCCATCTTTTTCATCCTCACAAAGTCGCCAGGTCAGGAGGGTaGGATTGCTGCCTGGACCCA | + |
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Preference number: 2 (lower is better) Translates to: CTGRACLSTLHLFHPHKVARSGG*DCCLDP Trigger: TGGGTCCAGGCAGCAATCGCACCCTCCTGACCTGGC...GACTTTGTGAGGATGAAAAAGATGGAGAGTAGACAGGCAAGCCCTTCCTGTGCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| 3UTR-3UTR CCA 90 bp | AACACCTGCATTTACAGGACGGAGGCAGATGTCCACAGCCCTGGGCATGCATGTAATGAACAAGGGAGGTaGAGCCATGCACAGGAAGGG | + |
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Preference number: 2 (lower is better) Translates to: NTCIYRTEADVHSPGHACNEQGR*SHAQEG Trigger: CCCTTCCTGTGCATGGCTCCACCTCCCTTGTTCATT...ACATGCATGCCCAGGGCTGTGGACATCTGCCTCCGTCCTGTAAATGCAGGTGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| 3UTR-3UTR GCA 90 bp | AACACCTGCATTTACAGGACGGAGGCAGATGTCCACAGCCCTGGGCATGCATGTTGCACAGGAAGGGCTTaGCTGTCTACTCTCCATCTT | + |
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Preference number: 2 (lower is better) Translates to: NTCIYRTEADVHSPGHACCTGRA*LSTLHL Trigger: AAGATGGAGAGTAGACAGGCAAGCCCTTCCTGTGCA...ACATGCATGCCCAGGGCTGTGGACATCTGCCTCCGTCCTGTAAATGCAGGTGTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| 3UTR-3UTR CCA 90 bp | TGCACAGGAAGGGCTTGCCTGTCTACTCTCCATCTTTTTCATCCTCACAAAGTCGGAGCCAGCCTGAACTaGAGGAGGAGGAAGCCACAG | + |
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Preference number: 2 (lower is better) Translates to: CTGRACLSTLHLFHPHKVGASLN*RRRKPQ Trigger: CTGTGGCTTCCTCCTCCTCCAGTTCAGGCTGGCTCC...GACTTTGTGAGGATGAAAAAGATGGAGAGTAGACAGGCAAGCCCTTCCTGTGCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| 3UTR-3UTR CCA 90 bp | GGGACCATGCTTCAAAGGCAGTCAGAGGCATTAAATACAGGGGCTGAACATTATCCTGGACCCAGGTCCTaGGAGAGCAGGAGAGATCAC | + |
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Preference number: 2 (lower is better) Translates to: GTMLQRQSEALNTGAEHYPGPRS*ESRRDH Trigger: GTGATCTCTCCTGCTCTCCCAGGACCTGGGTCCAGG...ATAATGTTCAGCCCCTGTATTTAATGCCTCTGACTGCCTTTGAAGCATGGTCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| 3UTR-3UTR CCA 90 bp | TATCTCCTGTGGAATCAGGCAAATCATGAATGCATAAATATCACAGCACAGCCAGGTGCGATTGCTGCCTaGACCCAGGTCCTGGGAGAG | + |
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Preference number: 2 (lower is better) Translates to: YLLWNQANHECINITAQPGAIAA*TQVLGE Trigger: CTCTCCCAGGACCTGGGTCCAGGCAGCAATCGCACC...TGGCTGTGCTGTGATATTTATGCATTCATGATTTGCCTGATTCCACAGGAGATA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| 3UTR-3UTR CCA 90 bp | TCAGAGGCATTAAATACAGGGGCTGAACATTATAGTCCATCTCACCGTACATATGGAGGAAGCCACAGTTaGCCAGGTCAGGAGGGTGCG | + |
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Preference number: 2 (lower is better) Translates to: SEALNTGAEHYSPSHRTYGGSHS*PGQEGA Trigger: CGCACCCTCCTGACCTGGCCAACTGTGGCTTCCTCC...ATATGTACGGTGAGATGGACTATAATGTTCAGCCCCTGTATTTAATGCCTCTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| 3UTR-3UTR CCA 90 bp | AGGCCACAGGGGACCATGCTTCAAAGGCAGTCAGAGGCATTAAATACAGGGGCTACATGCAAGCGGCTTTaGTCAGAGAAAATGAACAAG | + |
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Preference number: 2 (lower is better) Translates to: RPQGTMLQRQSEALNTGATCKRL*SEKMNK Trigger: CTTGTTCATTTTCTCTGACCAAAGCCGCTTGCATGT...AGCCCCTGTATTTAATGCCTCTGACTGCCTTTGAAGCATGGTCCCCTGTGGCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| 3UTR CAA 90 bp | TCAGAGAAAATGAACAAGGGAGGTGGAGCCATGCACAGGAAGGGCTaGCCTGTCTACTCTCCATCTTTTTCATCCTCACAAAGTCATCTG | + |
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Preference number: 2 (lower is better) Translates to: SEKMNKGGGAMHRKG*PVYSPSFSSSQSHL Trigger: CAGATGACTTTGTGAGGATGAAAAAGATGGAGAGTAGACAGGCAAGCCCTTCCTGTGCATGGCTCCACCTCCCTTGTTCATTTTCTCTGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| 3UTR GCA 72 bp | AGGAAGCCACAGTTGGCCAGGTCAGGAGGGTGCGATTaGTGCCTGGACCCAGGTCCTGGGAGAGCAGGAGAG | + |
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Preference number: 3 (lower is better) Translates to: RKPQLARSGGCD*CLDPGPGRAGE Trigger: CTCTCCTGCTCTCCCAGGACCTGGGTCCAGGCAGCAATCGCACCCTCCTGACCTGGCCAACTGTGGCTTCCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| 3UTR GCA 72 bp | AGGAGGAGGAAGCCACAGTTGGCCAGGTCAGGAGGGTaGGATTGCTGCCTGGACCCAGGTCCTGGGAGAGCA | + |
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Preference number: 3 (lower is better) Translates to: RRRKPQLARSGG*DCCLDPGPGRA Trigger: TGCTCTCCCAGGACCTGGGTCCAGGCAGCAATCGCACCCTCCTGACCTGGCCAACTGTGGCTTCCTCCTCCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| 3UTR CCA 72 bp | GTCAGGAGGGTGCGATTGCTGCCTGGACCCAGGTCCTaGGAGAGCAGGAGAGATCACGGAGGAATCCACTTT | + |
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Preference number: 3 (lower is better) Translates to: VRRVRLLPGPRS*ESRRDHGGIHF Trigger: AAAGTGGATTCCTCCGTGATCTCTCCTGCTCTCCCAGGACCTGGGTCCAGGCAGCAATCGCACCCTCCTGAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| 3UTR GCA 72 bp | CCAATCGACAGGAAGGACAGAGCACACAGAAACACCTaGATTTACAGGACGGAGGCAGATGTCCACAGCCCT | + |
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Preference number: 3 (lower is better) Translates to: PIDRKDRAHRNT*IYRTEADVHSP Trigger: AGGGCTGTGGACATCTGCCTCCGTCCTGTAAATGCAGGTGTTTCTGTGTGCTCTGTCCTTCCTGTCGATTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| 3UTR CCA 72 bp | CTGCATTTACAGGACGGAGGCAGATGTCCACAGCCCTaGGCATGCATGTATCTCCTGTGGAATCAGGCAAAT | + |
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Preference number: 3 (lower is better) Translates to: LHLQDGGRCPQP*ACMYLLWNQAN Trigger: ATTTGCCTGATTCCACAGGAGATACATGCATGCCCAGGGCTGTGGACATCTGCCTCCGTCCTGTAAATGCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| 3UTR-3UTR CAA 90 bp | CTTCAAAGGCAGTCAGAGGCATTAAATACAGGGGCTGAACATTATAGTCCATCTGTCAGGAGGGTGCGATaGCTGCCTGGACCCAGGTCC | + |
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Preference number: 3 (lower is better) Translates to: LQRQSEALNTGAEHYSPSVRRVR*LPGPRS Trigger: GGACCTGGGTCCAGGCAGCAATCGCACCCTCCTGAC...AGATGGACTATAATGTTCAGCCCCTGTATTTAATGCCTCTGACTGCCTTTGAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| 3UTR-3UTR CAA 90 bp | AGGCCACAGGGGACCATGCTTCAAAGGCAGTCAGAGGCATTAAATACAGGGGCTAGAACACTTGAACCATaGGAAGGAGCCAGCCTGAAC | + |
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Preference number: 3 (lower is better) Translates to: RPQGTMLQRQSEALNTGARTLEP*EGASLN Trigger: GTTCAGGCTGGCTCCTTCCAATGGTTCAAGTGTTCT...AGCCCCTGTATTTAATGCCTCTGACTGCCTTTGAAGCATGGTCCCCTGTGGCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| 3UTR GCA 72 bp | TTACAGGACGGAGGCAGATGTCCACAGCCCTGGGCATaGATGTATCTCCTGTGGAATCAGGCAAATCATGAA | + |
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Preference number: 3 (lower is better) Translates to: LQDGGRCPQPWA*MYLLWNQANHE Trigger: TTCATGATTTGCCTGATTCCACAGGAGATACATGCATGCCCAGGGCTGTGGACATCTGCCTCCGTCCTGTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| 3UTR-3UTR CAA 90 bp | TCAGAGGCATTAAATACAGGGGCTGAACATTATAGTCCATCTCACCGTACATATAGGAGGAAGCCACAGTaGGCCAGGTCAGGAGGGTGC | + |
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Preference number: 3 (lower is better) Translates to: SEALNTGAEHYSPSHRTYRRKPQ*ARSGGC Trigger: GCACCCTCCTGACCTGGCCAACTGTGGCTTCCTCCT...ATATGTACGGTGAGATGGACTATAATGTTCAGCCCCTGTATTTAATGCCTCTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| 3UTR TCA 72 bp | AGAGATCACGGAGGAATCCACTTTTACAAGCAAAGCTaGACATGGCAGGCCAAGCCTGTGTTTCTCACAAAT | + |
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Preference number: 3 (lower is better) Translates to: RDHGGIHFYKQS*TWQAKPVFLTN Trigger: ATTTGTGAGAAACACAGGCTTGGCCTGCCATGTTCAGCTTTGCTTGTAAAAGTGGATTCCTCCGTGATCTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| 3UTR CCA 72 bp | AGATGTCCACAGCCCTGGGCATGCATGTATCTCCTGTaGAATCAGGCAAATCATGAATGCATAAATATCACA | + |
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Preference number: 3 (lower is better) Translates to: RCPQPWACMYLL*NQANHECINIT Trigger: TGTGATATTTATGCATTCATGATTTGCCTGATTCCACAGGAGATACATGCATGCCCAGGGCTGTGGACATCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| 3UTR-3UTR CAA 90 bp | ATGTATCTCCTGTGGAATCAGGCAAATCATGAATGCATAAATATCACAGCACAGTACATGCAAGCGGCTTaGGTCAGAGAAAATGAACAA | + |
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Preference number: 3 (lower is better) Translates to: MYLLWNQANHECINITAQYMQAA*VRENEQ Trigger: TTGTTCATTTTCTCTGACCAAAGCCGCTTGCATGTA...CTGTGCTGTGATATTTATGCATTCATGATTTGCCTGATTCCACAGGAGATACAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| 3UTR GCA 72 bp | TCATATATTAAAAGTAAGGATACCACGGTATATACATaGAAGCGGCTTTGGTCAGAGAAAATGAACAAGGGA | + |
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Preference number: 3 (lower is better) Translates to: SYIKSKDTTVYT*KRLWSEKMNKG Trigger: TCCCTTGTTCATTTTCTCTGACCAAAGCCGCTTGCATGTATATACCGTGGTATCCTTACTTTTAATATATGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| 3UTR CAA 72 bp | GAGGAAGCCACAGTTGGCCAGGTCAGGAGGGTGCGATaGCTGCCTGGACCCAGGTCCTGGGAGAGCAGGAGA | + |
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Preference number: 4 (lower is better) Translates to: EEATVGQVRRVR*LPGPRSWESRR Trigger: TCTCCTGCTCTCCCAGGACCTGGGTCCAGGCAGCAATCGCACCCTCCTGACCTGGCCAACTGTGGCTTCCTC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| CDS-3UTR CCA 90 bp | AAGCCACAGTTGGCCAGGTCAGGAGGGTGCGATTGCTGCCTGGACCCAGGTCCTTCGTCCACAGTCAGGTaGCCAGTGGGGCAGTCCTTG | + |
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Preference number: 4 (lower is better) Translates to: KPQLARSGGCDCCLDPGPSSTVR*PVGQSL Trigger: CAAGGACTGCCCCACTGGCCACCTGACTGTGGACGA...AGGACCTGGGTCCAGGCAGCAATCGCACCCTCCTGACCTGGCCAACTGTGGCTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| CDS-3UTR CCA 90 bp | CCACAGTTGGCCAGGTCAGGAGGGTGCGATTGCTGCCTGGACCCAGGTCCTGGGCAACCGGACAATGGATaGGTCGCTCTTGGCACCTTT | + |
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Preference number: 4 (lower is better) Translates to: PQLARSGGCDCCLDPGPGQPDNG*VALGTF Trigger: AAAGGTGCCAAGAGCGACCCATCCATTGTCCGGTTG...CCCAGGACCTGGGTCCAGGCAGCAATCGCACCCTCCTGACCTGGCCAACTGTGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| CDS-3UTR CCA 90 bp | CCTGAACTGGAGGAGGAGGAAGCCACAGTTGGCCAGGTCAGGAGGGTGCGATTGACACCATCTTGTAGATaGCCTGCACTATCTCCAGCA | + |
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Preference number: 4 (lower is better) Translates to: PELEEEEATVGQVRRVRLTPSCR*PALSPA Trigger: TGCTGGAGATAGTGCAGGCCATCTACAAGATGGTGT...CAATCGCACCCTCCTGACCTGGCCAACTGTGGCTTCCTCCTCCTCCAGTTCAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| CDS-3UTR CCA 90 bp | TGCACAGGAAGGGCTTGCCTGTCTACTCTCCATCTTTTTCATCCTCACAAAGTCGCAGCAACCGGACAATaGATGGGTCGCTCTTGGCAC | + |
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Preference number: 4 (lower is better) Translates to: CTGRACLSTLHLFHPHKVAATGQ*MGRSWH Trigger: GTGCCAAGAGCGACCCATCCATTGTCCGGTTGCTGC...GACTTTGTGAGGATGAAAAAGATGGAGAGTAGACAGGCAAGCCCTTCCTGTGCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| CDS-3UTR GCA 90 bp | CTGTGGAATCAGGCAAATCATGAATGCATAAATATCACAGCACAGCCAGACTTGTGTTCCCGCAGGTCCTaGAGCACCTCAGGACGCAGC | + |
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Preference number: 4 (lower is better) Translates to: LWNQANHECINITAQPDLCSRRS*STSGRS Trigger: GCTGCGTCCTGAGGTGCTGCAGGACCTGCGGGAACA...CAAGTCTGGCTGTGCTGTGATATTTATGCATTCATGATTTGCCTGATTCCACAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| CDS-3UTR GCA 90 bp | ATGAACAAGGGAGGTGGAGCCATGCACAGGAAGGGCTTGCCTGTCTACTCTCCACTTCCAGGGACAGTTTaGCATCATTGTTTGTGTCCA | + |
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Preference number: 4 (lower is better) Translates to: MNKGGGAMHRKGLPVYSPLPGTV*HHCLCP Trigger: TGGACACAAACAATGATGGCAAACTGTCCCTGGAAG...TGGAGAGTAGACAGGCAAGCCCTTCCTGTGCATGGCTCCACCTCCCTTGTTCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| 3UTR CAA 72 bp | ATGAACAAGGGAGGTGGAGCCATGCACAGGAAGGGCTaGCCTGTCTACTCTCCATCTTTTTCATCCTCACAA | + |
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Preference number: 4 (lower is better) Translates to: MNKGGGAMHRKG*PVYSPSFSSSQ Trigger: TTGTGAGGATGAAAAAGATGGAGAGTAGACAGGCAAGCCCTTCCTGTGCATGGCTCCACCTCCCTTGTTCAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| CDS-3UTR CCA 90 bp | TCAGAGGCATTAAATACAGGGGCTGAACATTATAGTCCATCTCACCGTACATATTTCGCTTTTCGGGCGTaGACTCGTCCTCAGGCATCT | + |
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Preference number: 4 (lower is better) Translates to: SEALNTGAEHYSPSHRTYFAFRA*TRPQAS Trigger: AGATGCCTGAGGACGAGTCCACGCCCGAAAAGCGAA...ATATGTACGGTGAGATGGACTATAATGTTCAGCCCCTGTATTTAATGCCTCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| CDS-3UTR CAA 90 bp | CAGGACGGAGGCAGATGTCCACAGCCCTGGGCATGCATGTATCTCCTGTGGAATATGCTAAAGGCCCACTaGAGCTTCTGTTCCAGCTTG | + |
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Preference number: 5 (lower is better) Translates to: QDGGRCPQPWACMYLLWNMLKAH*SFCSSL Trigger: CAAGCTGGAACAGAAGCTCAAGTGGGCCTTTAGCAT...ATTCCACAGGAGATACATGCATGCCCAGGGCTGTGGACATCTGCCTCCGTCCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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| CDS-3UTR CAA 90 bp | ATGAACAAGGGAGGTGGAGCCATGCACAGGAAGGGCTTGCCTGTCTACTCTCCAATGGATGGGTCGCTCTaGGCACCTTTGATGAATTCT | + |
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Preference number: 5 (lower is better) Translates to: MNKGGGAMHRKGLPVYSPMDGSL*APLMNS Trigger: AGAATTCATCAAAGGTGCCAAGAGCGACCCATCCAT...TGGAGAGTAGACAGGCAAGCCCTTCCTGTGCATGGCTCCACCTCCCTTGTTCAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071858.5 |
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