Pregenerated sensors for HP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031722Ensembl transcript IDs: ENSMUST00000074898.8
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | CCATCAGAGTATAGCCCAACCCTTCCACTTCCCCCTCTTCCATGGCTCCCAGCCGCGTTAGGGTGGGGGTaGTGTCCTTGGCTGACGCCG | + |
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Preference number: 4 (lower is better) Translates to: PSEYSPTLPLPPLPWLPAALGWG*CPWLTP Trigger: CGGCGTCAGCCAAGGACATCACCCCCACCCTAACGC...GGCTGGGAGCCATGGAAGAGGGGGAAGTGGAAGGGTTGGGCTATACTCTGATGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000074898.8 |
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| CDS-3UTR GCA 90 bp | CCATCAGAGTATAGCCCAACCCTTCCACTTCCCCCTCTTCCATGGCTCCCAGCCCCACCGATGATGCGCTaGACCTGGTCCACAGGGTGC | + |
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Preference number: 4 (lower is better) Translates to: PSEYSPTLPLPPLPWLPAPPMMR*TWSTGC Trigger: GCACCCTGTGGACCAGGTGCAGCGCATCATCGGTGG...GGCTGGGAGCCATGGAAGAGGGGGAAGTGGAAGGGTTGGGCTATACTCTGATGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074898.8 |
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| CDS-3UTR CCA 90 bp | CCATCAGAGTATAGCCCAACCCTTCCACTTCCCCCTCTTCCATGGCTCCCAGCCGCCGTTTGCAATCTCTaGGGGCTTTGGGCAGCTGTC | + |
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Preference number: 4 (lower is better) Translates to: PSEYSPTLPLPPLPWLPAAVCNL*GLWAAV Trigger: GACAGCTGCCCAAAGCCCCCAGAGATTGCAAACGGC...GGCTGGGAGCCATGGAAGAGGGGGAAGTGGAAGGGTTGGGCTATACTCTGATGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074898.8 |
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| CDS-3UTR GCA 90 bp | AACCCATCAGAGTATAGCCCAACCCTTCCACTTCCCCCTCTTCCATGGCTCCCAGCTCAGGATCCCAGCTaGGTACCAGGTGTCCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: NPSEYSPTLPLPPLPWLPAQDPS*VPGVLL Trigger: GAGGAGGACACCTGGTACGCAGCTGGGATCCTGAGC...TGGGAGCCATGGAAGAGGGGGAAGTGGAAGGGTTGGGCTATACTCTGATGGGTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074898.8 |
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| CDS-3UTR CCA 90 bp | TGCAGGGCTAGAACCCATCAGAGTATAGCCCAACCCTTCCACTTCCCCCTCTTCGGTCCACAGGGTGCTTaGGCTTCCCACACACTGCCT | + |
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Preference number: 4 (lower is better) Translates to: CRARTHQSIAQPFHFPLFGPQGA*ASHTLP Trigger: AGGCAGTGTGTGGGAAGCCCAAGCACCCTGTGGACC...GAAGAGGGGGAAGTGGAAGGGTTGGGCTATACTCTGATGGGTTCTAGCCCTGCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074898.8 |
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| CDS-3UTR CCA 90 bp | AACCCATCAGAGTATAGCCCAACCCTTCCACTTCCCCCTCTTCCATGGCTCCCAATGATGCGCTGCACCTaGTCCACAGGGTGCTTGGGC | + |
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Preference number: 4 (lower is better) Translates to: NPSEYSPTLPLPPLPWLPMMRCT*STGCLG Trigger: GCCCAAGCACCCTGTGGACCAGGTGCAGCGCATCAT...TGGGAGCCATGGAAGAGGGGGAAGTGGAAGGGTTGGGCTATACTCTGATGGGTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074898.8 |
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| CDS-3UTR CCA 90 bp | CAGTGCAGGGCTAGAACCCATCAGAGTATAGCCCAACCCTTCCACTTCCCCCTCACCACACACTTGTCCTaGTCGGCCACAGGCAGCATG | + |
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Preference number: 4 (lower is better) Translates to: QCRARTHQSIAQPFHFPLTTHLS*SATGSM Trigger: CATGCTGCCTGTGGCCGACCAGGACAAGTGTGTGGT...GAGGGGGAAGTGGAAGGGTTGGGCTATACTCTGATGGGTTCTAGCCCTGCACTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074898.8 |
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| CDS-3UTR GCA 90 bp | GCTAGAACCCATCAGAGTATAGCCCAACCCTTCCACTTCCCCCTCTTCCATGGCCCAGCACAGAAGGTGTaGTCGTTCAAGATAGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: ARTHQSIAQPFHFPLFHGPAQKV*SFKIGW Trigger: CCAGCCTATCTTGAACGAGCACACCTTCTGTGCTGG...GCCATGGAAGAGGGGGAAGTGGAAGGGTTGGGCTATACTCTGATGGGTTCTAGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074898.8 |
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| CDS-3UTR CCA 90 bp | AACCCATCAGAGTATAGCCCAACCCTTCCACTTCCCCCTCTTCCATGGCTCCCAGACGCCGTCTCGCTGTaGTTCAGGAAGAGGTTTTTG | + |
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Preference number: 4 (lower is better) Translates to: NPSEYSPTLPLPPLPWLPDAVSL*FRKRFL Trigger: CAAAAACCTCTTCCTGAACCACAGCGAGACGGCGTC...TGGGAGCCATGGAAGAGGGGGAAGTGGAAGGGTTGGGCTATACTCTGATGGGTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000074898.8 |
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| CDS-3UTR CCA 90 bp | GCTAGAACCCATCAGAGTATAGCCCAACCCTTCCACTTCCCCCTCTTCCATGGCACGGAGTGGTTGGGGTaGAGAACGACCTTCTCAATC | + |
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Preference number: 4 (lower is better) Translates to: ARTHQSIAQPFHFPLFHGTEWLG*RTTFSI Trigger: GATTGAGAAGGTCGTTCTCCACCCCAACCACTCCGT...GCCATGGAAGAGGGGGAAGTGGAAGGGTTGGGCTATACTCTGATGGGTTCTAGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074898.8 |
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| CDS-3UTR CCA 90 bp | GCTAGAACCCATCAGAGTATAGCCCAACCCTTCCACTTCCCCCTCTTCCATGGCGTAGCCCACACGGCCTaGTGCTATGTAGTCTTTGGA | + |
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Preference number: 4 (lower is better) Translates to: ARTHQSIAQPFHFPLFHGVAHTA*CYVVFG Trigger: TCCAAAGACTACATAGCACCAGGCCGTGTGGGCTAC...GCCATGGAAGAGGGGGAAGTGGAAGGGTTGGGCTATACTCTGATGGGTTCTAGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074898.8 |
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| CDS-3UTR TCA 90 bp | TTTTTATTGTTGACTGAGCAGTGCAGGGCTAGAACCCATCAGAGTATAGCCCAAGGTGATGTCCTTGGCTaGCGCCGTCTCGCTGTGGTT | + |
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Preference number: 4 (lower is better) Translates to: FLLLTEQCRARTHQSIAQGDVLG*RRLAVV Trigger: AACCACAGCGAGACGGCGTCAGCCAAGGACATCACC...TTGGGCTATACTCTGATGGGTTCTAGCCCTGCACTGCTCAGTCAACAATAAAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074898.8 |
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| CDS-3UTR GCA 90 bp | TGCAGGGCTAGAACCCATCAGAGTATAGCCCAACCCTTCCACTTCCCCCTCTTCAGTCCATGGCATCATTaGCCAACTCCACAGCAAAAA | + |
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Preference number: 4 (lower is better) Translates to: CRARTHQSIAQPFHFPLFSPWHH*PTPQQK Trigger: TTTTTGCTGTGGAGTTGGGCAATGATGCCATGGACT...GAAGAGGGGGAAGTGGAAGGGTTGGGCTATACTCTGATGGGTTCTAGCCCTGCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074898.8 |
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| CDS-3UTR GCA 90 bp | AGGGCTAGAACCCATCAGAGTATAGCCCAACCCTTCCACTTCCCCCTCTTCCATGTTACAAGCACCCTCTaGTTGAGTTTGATTAGCCCG | + |
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Preference number: 4 (lower is better) Translates to: RARTHQSIAQPFHFPLFHVTSTL*LSLISP Trigger: CGGGCTAATCAAACTCAAGCAGAGGGTGCTTGTAAC...ATGGAAGAGGGGGAAGTGGAAGGGTTGGGCTATACTCTGATGGGTTCTAGCCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074898.8 |
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| CDS-3UTR CCA 90 bp | AGGGCTAGAACCCATCAGAGTATAGCCCAACCCTTCCACTTCCCCCTCTTCCATAATCTCTGGGGGCTTTaGGCAGCTGTCATCTTCAAA | + |
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Preference number: 4 (lower is better) Translates to: RARTHQSIAQPFHFPLFHNLWGL*AAVIFK Trigger: TTTGAAGATGACAGCTGCCCAAAGCCCCCAGAGATT...ATGGAAGAGGGGGAAGTGGAAGGGTTGGGCTATACTCTGATGGGTTCTAGCCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000074898.8 |
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| CDS-3UTR TCA 90 bp | TTTTTATTGTTGACTGAGCAGTGCAGGGCTAGAACCCATCAGAGTATAGCCCAATCCACAGCAAAAAGCTaGCCCCAGAGCAGGAGAGTG | + |
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Preference number: 4 (lower is better) Translates to: FLLLTEQCRARTHQSIAQSTAKS*PQSRRV Trigger: CACTCTCCTGCTCTGGGGTCAGCTTTTTGCTGTGGA...TTGGGCTATACTCTGATGGGTTCTAGCCCTGCACTGCTCAGTCAACAATAAAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000074898.8 |
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| CDS-3UTR TCA 90 bp | TTTTTATTGTTGACTGAGCAGTGCAGGGCTAGAACCCATCAGAGTATAGCCCAACTTCCTGGTACTTGGTaGGGCCAGCACAGAAGGTGT | + |
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Preference number: 4 (lower is better) Translates to: FLLLTEQCRARTHQSIAQLPGTW*GQHRRC Trigger: ACACCTTCTGTGCTGGCCTCACCAAGTACCAGGAAG...TTGGGCTATACTCTGATGGGTTCTAGCCCTGCACTGCTCAGTCAACAATAAAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074898.8 |
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| CDS-3UTR CAA 90 bp | CAGAGTATAGCCCAACCCTTCCACTTCCCCCTCTTCCATGGCTCCCAGCCTGCCGTGGGGGTGATGTCCTaGGCTGACGCCGTCTCGCTG | + |
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Preference number: 5 (lower is better) Translates to: QSIAQPFHFPLFHGSQPAVGVMS*ADAVSL Trigger: CAGCGAGACGGCGTCAGCCAAGGACATCACCCCCAC...GGCAGGCTGGGAGCCATGGAAGAGGGGGAAGTGGAAGGGTTGGGCTATACTCTG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000074898.8 |
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| CDS-3UTR CAA 90 bp | CCATCAGAGTATAGCCCAACCCTTCCACTTCCCCCTCTTCCATGGCTCCCAGCCCAAGGAAAGCTGCCTTaGGCATCCATAGAGCCACCG | + |
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Preference number: 5 (lower is better) Translates to: PSEYSPTLPLPPLPWLPAQGKLP*ASIEPP Trigger: CGGTGGCTCTATGGATGCCAAAGGCAGCTTTCCTTG...GGCTGGGAGCCATGGAAGAGGGGGAAGTGGAAGGGTTGGGCTATACTCTGATGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074898.8 |
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| CDS-3UTR CAA 90 bp | CCATCAGAGTATAGCCCAACCCTTCCACTTCCCCCTCTTCCATGGCTCCCAGCCCAATCTCTGGGGGCTTaGGGCAGCTGTCATCTTCAA | + |
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Preference number: 5 (lower is better) Translates to: PSEYSPTLPLPPLPWLPAQSLGA*GSCHLQ Trigger: TTGAAGATGACAGCTGCCCAAAGCCCCCAGAGATTG...GGCTGGGAGCCATGGAAGAGGGGGAAGTGGAAGGGTTGGGCTATACTCTGATGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000074898.8 |
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| CDS-3UTR CAA 90 bp | AACCCATCAGAGTATAGCCCAACCCTTCCACTTCCCCCTCTTCCATGGCTCCCATCGGTAAATCTAAAGTaGGCGTTCCGCCCCCAGCCA | + |
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Preference number: 5 (lower is better) Translates to: NPSEYSPTLPLPPLPWLPSVNLK*AFRPQP Trigger: TGGCTGGGGGCGGAACGCCAACTTTAGATTTACCGA...TGGGAGCCATGGAAGAGGGGGAAGTGGAAGGGTTGGGCTATACTCTGATGGGTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000074898.8 |
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| CDS-3UTR CAA 90 bp | CAGAGTATAGCCCAACCCTTCCACTTCCCCCTCTTCCATGGCTCCCAGCCTGCCGGCAGCATGACATACTaGAGACGATCGGTAAATCTA | + |
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Preference number: 5 (lower is better) Translates to: QSIAQPFHFPLFHGSQPAGSMTY*RRSVNL Trigger: TAGATTTACCGATCGTCTCAAGTATGTCATGCTGCC...GGCAGGCTGGGAGCCATGGAAGAGGGGGAAGTGGAAGGGTTGGGCTATACTCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074898.8 |
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| CDS-3UTR CAA 90 bp | TTTTTATTGTTGACTGAGCAGTGCAGGGCTAGAACCCATCAGAGTATAGCCCAATGGTCCACAGGGTGCTaGGGCTTCCCACACACTGCC | + |
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Preference number: 5 (lower is better) Translates to: FLLLTEQCRARTHQSIAQWSTGC*GFPHTA Trigger: GGCAGTGTGTGGGAAGCCCAAGCACCCTGTGGACCA...TTGGGCTATACTCTGATGGGTTCTAGCCCTGCACTGCTCAGTCAACAATAAAAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074898.8 |
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| CDS-3UTR CAA 90 bp | AGGGCTAGAACCCATCAGAGTATAGCCCAACCCTTCCACTTCCCCCTCTTCCATAAGTCCATGGCATCATaGCCCAACTCCACAGCAAAA | + |
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Preference number: 5 (lower is better) Translates to: RARTHQSIAQPFHFPLFHKSMAS*PNSTAK Trigger: TTTTGCTGTGGAGTTGGGCAATGATGCCATGGACTT...ATGGAAGAGGGGGAAGTGGAAGGGTTGGGCTATACTCTGATGGGTTCTAGCCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074898.8 |
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| CDS GCA 72 bp | TCGGGGAGTTTCTCTCCAGCGACTGTGTTCACCCATTaGTTCTCGTCGTTTAAGGTGTACACCCCATCTCCT | + |
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Preference number: 6 (lower is better) Translates to: SGSFSPATVFTH*FSSFKVYTPSP Trigger: AGGAGATGGGGTGTACACCTTAAACGACGAGAAGCAATGGGTGAACACAGTCGCTGGAGAGAAACTCCCCGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074898.8 |
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