RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HOXD9 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000043342

Ensembl transcript IDs: ENSMUST00000059272.10

Found 79 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TTGTTGGAAGCGGTAACATTTACAACTGGTCCTCAGGCAGGAATATaGAAGGCAACCTCCCGAGGCCGCCCAATGGGAGCTCAGCCCTCC +
Preference number: 1 (lower is better)
Translates to: LLEAVTFTTGPQAGI*KATSRGRPMGAQPS
Trigger: GGAGGGCTGAGCTCCCATTGGGCGGCCTCGGGAGGTTGCCTTCCATATTCCTGCCTGAGGACCAGTTGTAAATGTTACCGCTTCCAACAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
3UTR CCA 90 bp TCCTGCCTTGAGCAGCTGAGTTGGATTTTAGTTGGGAGAGCAGGGTaGGGGTGTCCACACTCTGTCTTCCTTCAGATTCTCGGAATTAGA +
Preference number: 1 (lower is better)
Translates to: SCLEQLSWILVGRAG*GCPHSVFLQILGIR
Trigger: TCTAATTCCGAGAATCTGAAGGAAGACAGAGTGTGGACACCCCCACCCTGCTCTCCCAACTAAAATCCAACTCAGCTGCTCAAGGCAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
3UTR CCA 90 bp TGTTCAGATCAGCATTTATTTGTTGGAAGCGGTAACATTTACAACTaGTCCTCAGGCAGGAATATGGAAGGCAACCTCCCGAGGCCGCCC +
Preference number: 1 (lower is better)
Translates to: CSDQHLFVGSGNIYN*SSGRNMEGNLPRPP
Trigger: GGGCGGCCTCGGGAGGTTGCCTTCCATATTCCTGCCTGAGGACCAGTTGTAAATGTTACCGCTTCCAACAAATAAATGCTGATCTGAACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
3UTR GCA 90 bp GGGACAGGACAAGACTCCAAAGCCACTTGGTTTCTCCAATACATATaGGAGCAAATACAGTGTCCCCCAGATAACTCACAGAGACCAACC +
Preference number: 1 (lower is better)
Translates to: GTGQDSKATWFLQYI*EQIQCPPDNSQRPT
Trigger: GGTTGGTCTCTGTGAGTTATCTGGGGGACACTGTATTTGCTCGCATATGTATTGGAGAAACCAAGTGGCTTTGGAGTCTTGTCCTGTCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
3UTR GCA 90 bp CAGAAACATGAGGGACATTTACATAGAATAGGGCTCCATCAAGCCTaGGTGCACTCACAAAATATAGCATTTCCTAAGGAATCAGGGGAG +
Preference number: 1 (lower is better)
Translates to: QKHEGHLHRIGLHQA*VHSQNIAFPKESGE
Trigger: CTCCCCTGATTCCTTAGGAAATGCTATATTTTGTGAGTGCACGCAGGCTTGATGGAGCCCTATTCTATGTAAATGTCCCTCATGTTTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
3UTR-3UTR GCA 90 bp GGTCCTCAGGCAGGAATATGGAAGGCAACCTCCCGAGGCCGCCCAATGGGAGCTGAAAGTCCGAGTCGCTaGAGAGTTTCTGAATCAAGC +
Preference number: 2 (lower is better)
Translates to: GPQAGIWKATSRGRPMGAESPSR*RVSESS
Trigger: GCTTGATTCAGAAACTCTGCAGCGACTCGGACTTTC...AGCTCCCATTGGGCGGCCTCGGGAGGTTGCCTTCCATATTCCTGCCTGAGGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
3UTR CAA 90 bp GGGTGTCCACACTCTGTCTTCCTTCAGATTCTCGGAATTAGATCGTaGGCCCTGTTTGGGAGGCTGGATAGGGTGAGACTAAACTACAGC +
Preference number: 2 (lower is better)
Translates to: GCPHSVFLQILGIRS*ALFGRLDRVRLNYS
Trigger: GCTGTAGTTTAGTCTCACCCTATCCAGCCTCCCAAACAGGGCCAACGATCTAATTCCGAGAATCTGAAGGAAGACAGAGTGTGGACACCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
3UTR-3UTR TCA 90 bp GATCAGCATTTATTTGTTGGAAGCGGTAACATTTACAACTGGTCCTCAGGCAGGAAACCCGCTGCCTTTTaGGTGCTGCAGGCCAGACCC +
Preference number: 2 (lower is better)
Translates to: DQHLFVGSGNIYNWSSGRKPAAF*VLQARP
Trigger: GGGTCTGGCCTGCAGCACTCAAAAGGCAGCGGGTTT...CCTGCCTGAGGACCAGTTGTAAATGTTACCGCTTCCAACAAATAAATGCTGATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
3UTR CAA 90 bp AGGGCCAGCGGCTGGGCTCCATTTGTTCAGATCAGCATTTATTTGTaGGAAGCGGTAACATTTACAACTGGTCCTCAGGCAGGAATATGG +
Preference number: 2 (lower is better)
Translates to: RASGWAPFVQISIYL*EAVTFTTGPQAGIW
Trigger: CCATATTCCTGCCTGAGGACCAGTTGTAAATGTTACCGCTTCCAACAAATAAATGCTGATCTGAACAAATGGAGCCCAGCCGCTGGCCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
3UTR-3UTR CCA 90 bp GGGCCAGCGGCTGGGCTCCATTTGTTCAGATCAGCATTTATTTGTTGGAAGCGGGACTCCAAAGCCACTTaGTTTCTCCAATACATATGC +
Preference number: 2 (lower is better)
Translates to: GPAAGLHLFRSAFICWKRDSKAT*FLQYIC
Trigger: GCATATGTATTGGAGAAACCAAGTGGCTTTGGAGTC...CCGCTTCCAACAAATAAATGCTGATCTGAACAAATGGAGCCCAGCCGCTGGCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
3UTR CAA 90 bp TTCAGGGCCAGCGGCTGGGCTCCATTTGTTCAGATCAGCATTTATTaGTTGGAAGCGGTAACATTTACAACTGGTCCTCAGGCAGGAATA +
Preference number: 2 (lower is better)
Translates to: FRASGWAPFVQISIY*LEAVTFTTGPQAGI
Trigger: TATTCCTGCCTGAGGACCAGTTGTAAATGTTACCGCTTCCAACAAATAAATGCTGATCTGAACAAATGGAGCCCAGCCGCTGGCCCTGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
3UTR-3UTR TCA 90 bp CTGGGCTCCATTTGTTCAGATCAGCATTTATTTGTTGGAAGCGGTAACATTTACGGGGTTTTCCTGCCTTaGGCAGCTGAGTTGGATTTT +
Preference number: 2 (lower is better)
Translates to: LGSICSDQHLFVGSGNIYGVFLP*AAELDF
Trigger: AAAATCCAACTCAGCTGCTCAAGGCAGGAAAACCCC...GTAAATGTTACCGCTTCCAACAAATAAATGCTGATCTGAACAAATGGAGCCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
3UTR CCA 72 bp CAGGAATATGGAAGGCAACCTCCCGAGGCCGCCCAATaGGAGCTCAGCCCTCCCGGGGAGAAAGTAGCTTCC +
Preference number: 3 (lower is better)
Translates to: QEYGRQPPEAAQ*ELSPPGEKVAS
Trigger: GGAAGCTACTTTCTCCCCGGGAGGGCTGAGCTCCCATTGGGCGGCCTCGGGAGGTTGCCTTCCATATTCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
3UTR CCA 72 bp GCGGTAACATTTACAACTGGTCCTCAGGCAGGAATATaGAAGGCAACCTCCCGAGGCCGCCCAATGGGAGCT +
Preference number: 3 (lower is better)
Translates to: AVTFTTGPQAGI*KATSRGRPMGA
Trigger: AGCTCCCATTGGGCGGCCTCGGGAGGTTGCCTTCCATATTCCTGCCTGAGGACCAGTTGTAAATGTTACCGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
3UTR CCA 72 bp GAGCAGCTGAGTTGGATTTTAGTTGGGAGAGCAGGGTaGGGGTGTCCACACTCTGTCTTCCTTCAGATTCTC +
Preference number: 3 (lower is better)
Translates to: EQLSWILVGRAG*GCPHSVFLQIL
Trigger: GAGAATCTGAAGGAAGACAGAGTGTGGACACCCCCACCCTGCTCTCCCAACTAAAATCCAACTCAGCTGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
3UTR-3UTR CAA 90 bp GAGGGAGTGGGACAGGACAAGACTCCAAAGCCACTTGGTTTCTCCAATACATATAAAACCCGCTGCCTTTaGAGTGCTGCAGGCCAGACC +
Preference number: 3 (lower is better)
Translates to: EGVGQDKTPKPLGFSNTYKTRCL*SAAGQT
Trigger: GGTCTGGCCTGCAGCACTCAAAAGGCAGCGGGTTTT...ATATGTATTGGAGAAACCAAGTGGCTTTGGAGTCTTGTCCTGTCCCACTCCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
3UTR CCA 72 bp GGAGGGAGTGGGACAGGACAAGACTCCAAAGCCACTTaGTTTCTCCAATACATATGCGAGCAAATACAGTGT +
Preference number: 3 (lower is better)
Translates to: GGSGTGQDSKAT*FLQYICEQIQC
Trigger: ACACTGTATTTGCTCGCATATGTATTGGAGAAACCAAGTGGCTTTGGAGTCTTGTCCTGTCCCACTCCCTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS-3UTR CCA 90 bp GGGGGTGTCCACACTCTGTCTTCCTTCAGATTCTCGGAATTAGATCGTTGGCCCGTGGCGCCCGTTGGCTaGGCCACCGGGGCTGGGAAC +
Preference number: 4 (lower is better)
Translates to: GGVHTLSSFRFSELDRWPVAPVG*ATGAGN
Trigger: GTTCCCAGCCCCGGTGGCCCAGCCAACGGGCGCCAC...GGGCCAACGATCTAATTCCGAGAATCTGAAGGAAGACAGAGTGTGGACACCCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS-3UTR GCA 90 bp TGGGAGAGCAGGGTGGGGGTGTCCACACTCTGTCTTCCTTCAGATTCTCGGAATGGCGGCTGCGGCGGCTaGTTCTCCTCCTCCTTCAGC +
Preference number: 4 (lower is better)
Translates to: WESRVGVSTLCLPSDSRNGGCGG*FSSSFS
Trigger: GCTGAAGGAGGAGGAGAAGCAGCCGCCGCAGCCGCC...ATTCCGAGAATCTGAAGGAAGACAGAGTGTGGACACCCCCACCCTGCTCTCCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS-3UTR CCA 90 bp CTGGTCCTCAGGCAGGAATATGGAAGGCAACCTCCCGAGGCCGCCCAATGGGAGCGCTGCAGGGTTGTTTaGGTCAAGTTGCTGCTGCGG +
Preference number: 4 (lower is better)
Translates to: LVLRQEYGRQPPEAAQWERCRVV*VKLLLR
Trigger: CCGCAGCAGCAACTTGACCCAAACAACCCTGCAGCG...CTCCCATTGGGCGGCCTCGGGAGGTTGCCTTCCATATTCCTGCCTGAGGACCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS-3UTR GCA 90 bp GGGAGTGGGACAGGACAAGACTCCAAAGCCACTTGGTTTCTCCAATACATATGCGCCATCGGCCACACCTaGGGGCCGGCCCTGTGTCCC +
Preference number: 4 (lower is better)
Translates to: GSGTGQDSKATWFLQYICAIGHT*GPALCP
Trigger: GGGACACAGGGCCGGCCCGCAGGTGTGGCCGATGGC...GCATATGTATTGGAGAAACCAAGTGGCTTTGGAGTCTTGTCCTGTCCCACTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS-3UTR GCA 90 bp TGGGAGAGCAGGGTGGGGGTGTCCACACTCTGTCTTCCTTCAGATTCTCGGAATGGCTCGGGTGATCGCTaGAAGCTGAGGGCTCGGACG +
Preference number: 4 (lower is better)
Translates to: WESRVGVSTLCLPSDSRNGSGDR*KLRART
Trigger: CGTCCGAGCCCTCAGCTTGCAGCGATCACCCGAGCC...ATTCCGAGAATCTGAAGGAAGACAGAGTGTGGACACCCCCACCCTGCTCTCCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS-3UTR CCA 90 bp CTGGTCCTCAGGCAGGAATATGGAAGGCAACCTCCCGAGGCCGCCCAATGGGAGAGCACTCAGTCCTTTTaGAGGAGGAGGACGAGGAGG +
Preference number: 4 (lower is better)
Translates to: LVLRQEYGRQPPEAAQWESTQSF*RRRTRR
Trigger: CCTCCTCGTCCTCCTCCTCCAAAAGGACTGAGTGCT...CTCCCATTGGGCGGCCTCGGGAGGTTGCCTTCCATATTCCTGCCTGAGGACCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS-3UTR GCA 90 bp GGGGGTGTCCACACTCTGTCTTCCTTCAGATTCTCGGAATTAGATCGTTGGCCCCCCGCAGGAACGAGTTaGACGGGAATTCTGGGCCGC +
Preference number: 4 (lower is better)
Translates to: GGVHTLSSFRFSELDRWPPAGTS*TGILGR
Trigger: GCGGCCCAGAATTCCCGTGCAACTCGTTCCTGCGGG...GGGCCAACGATCTAATTCCGAGAATCTGAAGGAAGACAGAGTGTGGACACCCCC
58% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS-3UTR CCA 90 bp AAGCCACTTGGTTTCTCCAATACATATGCGAGCAAATACAGTGTCCCCCAGATAAGGCGAACTCGGCGGTaGCGGCGGCTGGGCCATCGG +
Preference number: 4 (lower is better)
Translates to: KPLGFSNTYASKYSVPQIRRTRR*RRLGHR
Trigger: CCGATGGCCCAGCCGCCGCCACCGCCGAGTTCGCCT...TATCTGGGGGACACTGTATTTGCTCGCATATGTATTGGAGAAACCAAGTGGCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS-3UTR CCA 90 bp GGGAGTGGGACAGGACAAGACTCCAAAGCCACTTGGTTTCTCCAATACATATGCGTTGCACGGGAATTCTaGGCCGCCGCTCCCCTGGGA +
Preference number: 4 (lower is better)
Translates to: GSGTGQDSKATWFLQYICVAREF*AAAPLG
Trigger: TCCCAGGGGAGCGGCGGCCCAGAATTCCCGTGCAAC...GCATATGTATTGGAGAAACCAAGTGGCTTTGGAGTCTTGTCCTGTCCCACTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS-3UTR TCA 90 bp ATTTTAGTTGGGAGAGCAGGGTGGGGGTGTCCACACTCTGTCTTCCTTCAGATTGTGATCGCTGCAAGCTaGGGGCTCGGACGAGCCTAC +
Preference number: 4 (lower is better)
Translates to: ILVGRAGWGCPHSVFLQIVIAAS*GLGRAY
Trigger: GTAGGCTCGTCCGAGCCCTCAGCTTGCAGCGATCAC...AATCTGAAGGAAGACAGAGTGTGGACACCCCCACCCTGCTCTCCCAACTAAAAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS-3UTR TCA 90 bp GATCAGCATTTATTTGTTGGAAGCGGTAACATTTACAACTGGTCCTCAGGCAGGCAGCCCGGGCTCGGGTaGTCGCTGCAAGCTGAGGGC +
Preference number: 4 (lower is better)
Translates to: DQHLFVGSGNIYNWSSGRQPGLG*SLQAEG
Trigger: GCCCTCAGCTTGCAGCGATCACCCGAGCCCGGGCTG...CCTGCCTGAGGACCAGTTGTAAATGTTACCGCTTCCAACAAATAAATGCTGATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS-3UTR GCA 90 bp GAGCAAATACAGTGTCCCCCAGATAACTCACAGAGACCAACCACACAGTCACTTTTTGGGTCAAGTTGCTaGTGCGGCGGCTGCGGCGGC +
Preference number: 4 (lower is better)
Translates to: EQIQCPPDNSQRPTTQSLFGSSC*CGGCGG
Trigger: GCCGCCGCAGCCGCCGCAGCAGCAACTTGACCCAAA...AAGTGACTGTGTGGTTGGTCTCTGTGAGTTATCTGGGGGACACTGTATTTGCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS-3UTR CCA 90 bp ATCAGCATTTATTTGTTGGAAGCGGTAACATTTACAACTGGTCCTCAGGCAGGACGTAGTGGCGCCCGTTaGCTGGGCCACCGGGGCTGG +
Preference number: 4 (lower is better)
Translates to: ISIYLLEAVTFTTGPQAGRSGAR*LGHRGW
Trigger: CCAGCCCCGGTGGCCCAGCCAACGGGCGCCACTACG...TCCTGCCTGAGGACCAGTTGTAAATGTTACCGCTTCCAACAAATAAATGCTGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS-3UTR TCA 90 bp GGGAGTGGGACAGGACAAGACTCCAAAGCCACTTGGTTTCTCCAATACATATGCCCACGTAGTAGTTGCTaGGGGTGCCACTGGACGACA +
Preference number: 4 (lower is better)
Translates to: GSGTGQDSKATWFLQYICPRSSC*GCHWTT
Trigger: TGTCGTCCAGTGGCACCCTCAGCAACTACTACGTGG...GCATATGTATTGGAGAAACCAAGTGGCTTTGGAGTCTTGTCCTGTCCCACTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS-3UTR CCA 90 bp CAAAGCCACTTGGTTTCTCCAATACATATGCGAGCAAATACAGTGTCCCCCAGAGGGGACACGTACGGGTaGTACAGGCCGCTCATCGTC +
Preference number: 4 (lower is better)
Translates to: QSHLVSPIHMRANTVSPRGDTYG*YRPLIV
Trigger: GACGATGAGCGGCCTGTACCACCCGTACGTGTCCCC...TCTGGGGGACACTGTATTTGCTCGCATATGTATTGGAGAAACCAAGTGGCTTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS-3UTR TCA 90 bp AAGCCACTTGGTTTCTCCAATACATATGCGAGCAAATACAGTGTCCCCCAGATACGCCCTCATGGCCTATaGGCGAGTCCACGTAGTAGT +
Preference number: 4 (lower is better)
Translates to: KPLGFSNTYASKYSVPQIRPHGL*ASPRSS
Trigger: ACTACTACGTGGACTCGCTCATAGGCCATGAGGGCG...TATCTGGGGGACACTGTATTTGCTCGCATATGTATTGGAGAAACCAAGTGGCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS-3UTR CCA 90 bp GACAAGACTCCAAAGCCACTTGGTTTCTCCAATACATATGCGAGCAAATACAGTACCTCGTCGCCCTCATaGCCTATGAGCGAGTCCACG +
Preference number: 4 (lower is better)
Translates to: DKTPKPLGFSNTYASKYSTSSPS*PMSEST
Trigger: CGTGGACTCGCTCATAGGCCATGAGGGCGACGAGGT...ACTGTATTTGCTCGCATATGTATTGGAGAAACCAAGTGGCTTTGGAGTCTTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS-3UTR CCA 90 bp AACTACAGCACTTTTCAGAAACATGAGGGACATTTACATAGAATAGGGCTCCATCGGGTGGAGCGAGCGTaGATCCAGTTCGCTGCAGGG +
Preference number: 4 (lower is better)
Translates to: NYSTFQKHEGHLHRIGLHRVERA*IQFAAG
Trigger: CCCTGCAGCGAACTGGATCCACGCTCGCTCCACCCG...ATGGAGCCCTATTCTATGTAAATGTCCCTCATGTTTCTGAAAAGTGCTGTAGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
3UTR CAA 72 bp CACTCTGTCTTCCTTCAGATTCTCGGAATTAGATCGTaGGCCCTGTTTGGGAGGCTGGATAGGGTGAGACTA +
Preference number: 4 (lower is better)
Translates to: HSVFLQILGIRS*ALFGRLDRVRL
Trigger: TAGTCTCACCCTATCCAGCCTCCCAAACAGGGCCAACGATCTAATTCCGAGAATCTGAAGGAAGACAGAGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS-3UTR GCA 90 bp AGCGGCTGGGCTCCATTTGTTCAGATCAGCATTTATTTGTTGGAAGCGGTAACAGTGGATCCAGTTCGCTaGAGGGTTGTTTGGGTCAAG +
Preference number: 4 (lower is better)
Translates to: SGWAPFVQISIYLLEAVTVDPVR*RVVWVK
Trigger: CTTGACCCAAACAACCCTGCAGCGAACTGGATCCAC...TGTTACCGCTTCCAACAAATAAATGCTGATCTGAACAAATGGAGCCCAGCCGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
3UTR CAA 72 bp GGCTGGGCTCCATTTGTTCAGATCAGCATTTATTTGTaGGAAGCGGTAACATTTACAACTGGTCCTCAGGCA +
Preference number: 4 (lower is better)
Translates to: GWAPFVQISIYL*EAVTFTTGPQA
Trigger: TGCCTGAGGACCAGTTGTAAATGTTACCGCTTCCAACAAATAAATGCTGATCTGAACAAATGGAGCCCAGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
3UTR CAA 72 bp AGCGGCTGGGCTCCATTTGTTCAGATCAGCATTTATTaGTTGGAAGCGGTAACATTTACAACTGGTCCTCAG +
Preference number: 4 (lower is better)
Translates to: SGWAPFVQISIY*LEAVTFTTGPQ
Trigger: CTGAGGACCAGTTGTAAATGTTACCGCTTCCAACAAATAAATGCTGATCTGAACAAATGGAGCCCAGCCGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS-3UTR CCA 90 bp AACTACAGCACTTTTCAGAAACATGAGGGACATTTACATAGAATAGGGCTCCATAGAACACGGACGATTTaGGGGCAAAACTACACGAGG +
Preference number: 4 (lower is better)
Translates to: NYSTFQKHEGHLHRIGLHRTRTI*GQNYTR
Trigger: CCTCGTGTAGTTTTGCCCCCAAATCGTCCGTGTTCT...ATGGAGCCCTATTCTATGTAAATGTCCCTCATGTTTCTGAAAAGTGCTGTAGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS GCA 90 bp ACCCGGGCCTCCGCCACCGCCGCCACCACTGCCACCGCCACCGCCTaGGCCGCCGGGGAAGCCGGGCAGCGGCTCCATCCAGGAGCGTAC +
Preference number: 5 (lower is better)
Translates to: TRASATAATTATATA*AAGEAGQRLHPGAY
Trigger: GTACGCTCCTGGATGGAGCCGCTGCCCGGCTTCCCCGGCGGCGCAGGCGGTGGCGGTGGCAGTGGTGGCGGCGGTGGCGGAGGCCCGGGT
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS CCA 90 bp GCCATCGGCCACACCTGCGGGCCGGCCCTGTGTCCCCGGCCCCGGTaGCCCAAAGCGCGCGGCGAACACCTCGTCGCCCTCATGGCCTAT +
Preference number: 5 (lower is better)
Translates to: AIGHTCGPALCPRPR*PKARGEHLVALMAY
Trigger: ATAGGCCATGAGGGCGACGAGGTGTTCGCCGCGCGCTTTGGGCCACCGGGGCCGGGGACACAGGGCCGGCCCGCAGGTGTGGCCGATGGC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS GCA 90 bp GCCCGTTCCCTGTCGCCGCCGCTGCCTTGTCCCGCAGGAACGAGTTaGACGGGAATTCTGGGCCGCCGCTCCCCTGGGACTCGCGGGCCG +
Preference number: 5 (lower is better)
Translates to: ARSLSPPLPCPAGTS*TGILGRRSPGTRGP
Trigger: CGGCCCGCGAGTCCCAGGGGAGCGGCGGCCCAGAATTCCCGTGCAACTCGTTCCTGCGGGACAAGGCAGCGGCGGCGACAGGGAACGGGC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS CCA 90 bp CGCCGCCGCTGCCTTGTCCCGCAGGAACGAGTTGCACGGGAATTCTaGGCCGCCGCTCCCCTGGGACTCGCGGGCCGCGGAGCACTCAGT +
Preference number: 5 (lower is better)
Translates to: RRRCLVPQERVAREF*AAAPLGLAGRGALS
Trigger: ACTGAGTGCTCCGCGGCCCGCGAGTCCCAGGGGAGCGGCGGCCCAGAATTCCCGTGCAACTCGTTCCTGCGGGACAAGGCAGCGGCGGCG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS TCA 90 bp CTCCTCCTTCAGCGAGCAGCCCGGGCTCGGGTGATCGCTGCAAGCTaGGGGCTCGGACGAGCCTACCGCCCCTGGCCCGGTCCCGATTCC +
Preference number: 5 (lower is better)
Translates to: LLLQRAARARVIAAS*GLGRAYRPWPGPDS
Trigger: GGAATCGGGACCGGGCCAGGGGCGGTAGGCTCGTCCGAGCCCTCAGCTTGCAGCGATCACCCGAGCCCGGGCTGCTCGCTGAAGGAGGAG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS TCA 90 bp GGCGGCTGCTTCTCCTCCTCCTTCAGCGAGCAGCCCGGGCTCGGGTaGTCGCTGCAAGCTGAGGGCTCGGACGAGCCTACCGCCCCTGGC +
Preference number: 5 (lower is better)
Translates to: GGCFSSSFSEQPGLG*SLQAEGSDEPTAPG
Trigger: GCCAGGGGCGGTAGGCTCGTCCGAGCCCTCAGCTTGCAGCGATCACCCGAGCCCGGGCTGCTCGCTGAAGGAGGAGGAGAAGCAGCCGCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS GCA 90 bp GCTTCTCCTCCTCCTTCAGCGAGCAGCCCGGGCTCGGGTGATCGCTaGAAGCTGAGGGCTCGGACGAGCCTACCGCCCCTGGCCCGGTCC +
Preference number: 5 (lower is better)
Translates to: ASPPPSASSPGSGDR*KLRARTSLPPLARS
Trigger: GGACCGGGCCAGGGGCGGTAGGCTCGTCCGAGCCCTCAGCTTGCAGCGATCACCCGAGCCCGGGCTGCTCGCTGAAGGAGGAGGAGAAGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS CCA 90 bp GCTGGGCGGCCACCGCGGACCACGAGGCGGAGAACACGGACGATTTaGGGGCAAAACTACACGAGGCGAACTCGGCGGTGGCGGCGGCTG +
Preference number: 5 (lower is better)
Translates to: AGRPPRTTRRRTRTI*GQNYTRRTRRWRRL
Trigger: CAGCCGCCGCCACCGCCGAGTTCGCCTCGTGTAGTTTTGCCCCCAAATCGTCCGTGTTCTCCGCCTCGTGGTCCGCGGTGGCCGCCCAGC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS CCA 90 bp CGCCGCTCCCCTGGGACTCGCGGGCCGCGGAGCACTCAGTCCTTTTaGAGGAGGAGGACGAGGAGGTGGAGGAGGAGGAGGAGGTGGAGG +
Preference number: 5 (lower is better)
Translates to: RRSPGTRGPRSTQSF*RRRTRRWRRRRRWR
Trigger: CCTCCACCTCCTCCTCCTCCTCCACCTCCTCGTCCTCCTCCTCCAAAAGGACTGAGTGCTCCGCGGCCCGCGAGTCCCAGGGGAGCGGCG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS CCA 90 bp TCCCGCAGGAACGAGTTGCACGGGAATTCTGGGCCGCCGCTCCCCTaGGACTCGCGGGCCGCGGAGCACTCAGTCCTTTTGGAGGAGGAG +
Preference number: 5 (lower is better)
Translates to: SRRNELHGNSGPPLP*DSRAAEHSVLLEEE
Trigger: CTCCTCCTCCAAAAGGACTGAGTGCTCCGCGGCCCGCGAGTCCCAGGGGAGCGGCGGCCCAGAATTCCCGTGCAACTCGTTCCTGCGGGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS-3UTR CAA 90 bp TGGGAGAGCAGGGTGGGGGTGTCCACACTCTGTCTTCCTTCAGATTCTCGGAATGTTGTTTGGGTCAAGTaGCTGCTGCGGCGGCTGCGG +
Preference number: 5 (lower is better)
Translates to: WESRVGVSTLCLPSDSRNVVWVK*LLRRLR
Trigger: CCGCAGCCGCCGCAGCAGCAACTTGACCCAAACAAC...ATTCCGAGAATCTGAAGGAAGACAGAGTGTGGACACCCCCACCCTGCTCTCCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS-3UTR CAA 90 bp GATCAGCATTTATTTGTTGGAAGCGGTAACATTTACAACTGGTCCTCAGGCAGGGTCGCCGCCGCTGCCTaGTCCCGCAGGAACGAGTTG +
Preference number: 5 (lower is better)
Translates to: DQHLFVGSGNIYNWSSGRVAAAA*SRRNEL
Trigger: CAACTCGTTCCTGCGGGACAAGGCAGCGGCGGCGAC...CCTGCCTGAGGACCAGTTGTAAATGTTACCGCTTCCAACAAATAAATGCTGATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS-3UTR CAA 90 bp GGGAGTGGGACAGGACAAGACTCCAAAGCCACTTGGTTTCTCCAATACATATGCGAGCACTCAGTCCTTTaGGAGGAGGAGGACGAGGAG +
Preference number: 5 (lower is better)
Translates to: GSGTGQDSKATWFLQYICEHSVL*EEEDEE
Trigger: CTCCTCGTCCTCCTCCTCCAAAAGGACTGAGTGCTC...GCATATGTATTGGAGAAACCAAGTGGCTTTGGAGTCTTGTCCTGTCCCACTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS-3UTR CAA 90 bp CAAAGCCACTTGGTTTCTCCAATACATATGCGAGCAAATACAGTGTCCCCCAGATCCCGCAGGAACGAGTaGCACGGGAATTCTGGGCCG +
Preference number: 5 (lower is better)
Translates to: QSHLVSPIHMRANTVSPRSRRNE*HGNSGP
Trigger: CGGCCCAGAATTCCCGTGCAACTCGTTCCTGCGGGA...TCTGGGGGACACTGTATTTGCTCGCATATGTATTGGAGAAACCAAGTGGCTTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS-3UTR CAA 90 bp GTGAGACTAAACTACAGCACTTTTCAGAAACATGAGGGACATTTACATAGAATAGAGAACACGGACGATTaGGGGGCAAAACTACACGAG +
Preference number: 5 (lower is better)
Translates to: VRLNYSTFQKHEGHLHRIENTDD*GAKLHE
Trigger: CTCGTGTAGTTTTGCCCCCAAATCGTCCGTGTTCTC...TATTCTATGTAAATGTCCCTCATGTTTCTGAAAAGTGCTGTAGTTTAGTCTCAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS CCA 72 bp TCCCGTAGTGGCGCCCGTTGGCTGGGCCACCGGGGCTaGGAACGGGACCCGGGCCTCCGCCACCGCCGCCAC +
Preference number: 6 (lower is better)
Translates to: SRSGARWLGHRG*ERDPGLRHRRH
Trigger: GTGGCGGCGGTGGCGGAGGCCCGGGTCCCGTTCCCAGCCCCGGTGGCCCAGCCAACGGGCGCCACTACGGGA
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS CCA 72 bp CACACCTGCGGGCCGGCCCTGTGTCCCCGGCCCCGGTaGCCCAAAGCGCGCGGCGAACACCTCGTCGCCCTC +
Preference number: 6 (lower is better)
Translates to: HTCGPALCPRPR*PKARGEHLVAL
Trigger: GAGGGCGACGAGGTGTTCGCCGCGCGCTTTGGGCCACCGGGGCCGGGGACACAGGGCCGGCCCGCAGGTGTG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS TCA 72 bp CAGCGAGCAGCCCGGGCTCGGGTGATCGCTGCAAGCTaGGGGCTCGGACGAGCCTACCGCCCCTGGCCCGGT +
Preference number: 6 (lower is better)
Translates to: QRAARARVIAAS*GLGRAYRPWPG
Trigger: ACCGGGCCAGGGGCGGTAGGCTCGTCCGAGCCCTCAGCTTGCAGCGATCACCCGAGCCCGGGCTGCTCGCTG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS CAA 90 bp GGCCCGTTCCCTGTCGCCGCCGCTGCCTTGTCCCGCAGGAACGAGTaGCACGGGAATTCTGGGCCGCCGCTCCCCTGGGACTCGCGGGCC +
Preference number: 6 (lower is better)
Translates to: GPFPVAAAALSRRNE*HGNSGPPLPWDSRA
Trigger: GGCCCGCGAGTCCCAGGGGAGCGGCGGCCCAGAATTCCCGTGCAACTCGTTCCTGCGGGACAAGGCAGCGGCGGCGACAGGGAACGGGCC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS CAA 90 bp GTCCCGATTCCCACCCCGGGCCCGTTCCCTGTCGCCGCCGCTGCCTaGTCCCGCAGGAACGAGTTGCACGGGAATTCTGGGCCGCCGCTC +
Preference number: 6 (lower is better)
Translates to: VPIPTPGPFPVAAAA*SRRNELHGNSGPPL
Trigger: GAGCGGCGGCCCAGAATTCCCGTGCAACTCGTTCCTGCGGGACAAGGCAGCGGCGGCGACAGGGAACGGGCCCGGGGTGGGAATCGGGAC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS GCA 72 bp CCTCCTTCAGCGAGCAGCCCGGGCTCGGGTGATCGCTaGAAGCTGAGGGCTCGGACGAGCCTACCGCCCCTG +
Preference number: 6 (lower is better)
Translates to: PPSASSPGSGDR*KLRARTSLPPL
Trigger: CAGGGGCGGTAGGCTCGTCCGAGCCCTCAGCTTGCAGCGATCACCCGAGCCCGGGCTGCTCGCTGAAGGAGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS CCA 72 bp AAAACTACACGAGGCGAACTCGGCGGTGGCGGCGGCTaGGCCATCGGCCACACCTGCGGGCCGGCCCTGTGT +
Preference number: 6 (lower is better)
Translates to: KTTRGELGGGGG*AIGHTCGPALC
Trigger: ACACAGGGCCGGCCCGCAGGTGTGGCCGATGGCCCAGCCGCCGCCACCGCCGAGTTCGCCTCGTGTAGTTTT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS CCA 72 bp GGTTTCAGGCTTAATCCCGTAGTGGCGCCCGTTGGCTaGGCCACCGGGGCTGGGAACGGGACCCGGGCCTCC +
Preference number: 6 (lower is better)
Translates to: GFRLNPVVAPVG*ATGAGNGTRAS
Trigger: GGAGGCCCGGGTCCCGTTCCCAGCCCCGGTGGCCCAGCCAACGGGCGCCACTACGGGATTAAGCCTGAAACC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS CCA 72 bp TGCCTTGTCCCGCAGGAACGAGTTGCACGGGAATTCTaGGCCGCCGCTCCCCTGGGACTCGCGGGCCGCGGA +
Preference number: 6 (lower is better)
Translates to: CLVPQERVAREF*AAAPLGLAGRG
Trigger: TCCGCGGCCCGCGAGTCCCAGGGGAGCGGCGGCCCAGAATTCCCGTGCAACTCGTTCCTGCGGGACAAGGCA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS CAA 72 bp CCCACCCCGGGCCCGTTCCCTGTCGCCGCCGCTGCCTaGTCCCGCAGGAACGAGTTGCACGGGAATTCTGGG +
Preference number: 6 (lower is better)
Translates to: PTPGPFPVAAAA*SRRNELHGNSG
Trigger: CCCAGAATTCCCGTGCAACTCGTTCCTGCGGGACAAGGCAGCGGCGGCGACAGGGAACGGGCCCGGGGTGGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS CAA 90 bp GGCTGGGCGGCCACCGCGGACCACGAGGCGGAGAACACGGACGATTaGGGGGCAAAACTACACGAGGCGAACTCGGCGGTGGCGGCGGCT +
Preference number: 6 (lower is better)
Translates to: GWAATADHEAENTDD*GAKLHEANSAVAAA
Trigger: AGCCGCCGCCACCGCCGAGTTCGCCTCGTGTAGTTTTGCCCCCAAATCGTCCGTGTTCTCCGCCTCGTGGTCCGCGGTGGCCGCCCAGCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS CAA 90 bp CCGCCGCTCCCCTGGGACTCGCGGGCCGCGGAGCACTCAGTCCTTTaGGAGGAGGAGGACGAGGAGGTGGAGGAGGAGGAGGAGGTGGAG +
Preference number: 6 (lower is better)
Translates to: PPLPWDSRAAEHSVL*EEEDEEVEEEEEVE
Trigger: CTCCACCTCCTCCTCCTCCTCCACCTCCTCGTCCTCCTCCTCCAAAAGGACTGAGTGCTCCGCGGCCCGCGAGTCCCAGGGGAGCGGCGG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS GCA 72 bp CTGTCGCCGCCGCTGCCTTGTCCCGCAGGAACGAGTTaGACGGGAATTCTGGGCCGCCGCTCCCCTGGGACT +
Preference number: 6 (lower is better)
Translates to: LSPPLPCPAGTS*TGILGRRSPGT
Trigger: AGTCCCAGGGGAGCGGCGGCCCAGAATTCCCGTGCAACTCGTTCCTGCGGGACAAGGCAGCGGCGGCGACAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS GCA 72 bp GATTCCCACCCCGGGCCCGTTCCCTGTCGCCGCCGCTaGCTTGTCCCGCAGGAACGAGTTGCACGGGAATTC +
Preference number: 6 (lower is better)
Translates to: DSHPGPVPCRRR*LVPQERVAREF
Trigger: GAATTCCCGTGCAACTCGTTCCTGCGGGACAAGGCAGCGGCGGCGACAGGGAACGGGCCCGGGGTGGGAATC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS CCA 72 bp CCTGGGACTCGCGGGCCGCGGAGCACTCAGTCCTTTTaGAGGAGGAGGACGAGGAGGTGGAGGAGGAGGAGG +
Preference number: 6 (lower is better)
Translates to: PGTRGPRSTQSF*RRRTRRWRRRR
Trigger: CCTCCTCCTCCTCCACCTCCTCGTCCTCCTCCTCCAAAAGGACTGAGTGCTCCGCGGCCCGCGAGTCCCAGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS CAA 72 bp CCCTGGGACTCGCGGGCCGCGGAGCACTCAGTCCTTTaGGAGGAGGAGGACGAGGAGGTGGAGGAGGAGGAG +
Preference number: 6 (lower is better)
Translates to: PWDSRAAEHSVL*EEEDEEVEEEE
Trigger: CTCCTCCTCCTCCACCTCCTCGTCCTCCTCCTCCAAAAGGACTGAGTGCTCCGCGGCCCGCGAGTCCCAGGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS TCA 72 bp TTCTCCTCCTCCTTCAGCGAGCAGCCCGGGCTCGGGTaGTCGCTGCAAGCTGAGGGCTCGGACGAGCCTACC +
Preference number: 6 (lower is better)
Translates to: FSSSFSEQPGLG*SLQAEGSDEPT
Trigger: GGTAGGCTCGTCCGAGCCCTCAGCTTGCAGCGATCACCCGAGCCCGGGCTGCTCGCTGAAGGAGGAGGAGAA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS CCA 72 bp AACGAGTTGCACGGGAATTCTGGGCCGCCGCTCCCCTaGGACTCGCGGGCCGCGGAGCACTCAGTCCTTTTG +
Preference number: 6 (lower is better)
Translates to: NELHGNSGPPLP*DSRAAEHSVLL
Trigger: CAAAAGGACTGAGTGCTCCGCGGCCCGCGAGTCCCAGGGGAGCGGCGGCCCAGAATTCCCGTGCAACTCGTT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS CCA 72 bp GGAGCGAGCGTGGATCCAGTTCGCTGCAGGGTTGTTTaGGTCAAGTTGCTGCTGCGGCGGCTGCGGCGGCTG +
Preference number: 6 (lower is better)
Translates to: GASVDPVRCRVV*VKLLLRRLRRL
Trigger: CAGCCGCCGCAGCCGCCGCAGCAGCAACTTGACCCAAACAACCCTGCAGCGAACTGGATCCACGCTCGCTCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS CAA 72 bp CGGGTGGAGCGAGCGTGGATCCAGTTCGCTGCAGGGTaGTTTGGGTCAAGTTGCTGCTGCGGCGGCTGCGGC +
Preference number: 6 (lower is better)
Translates to: RVERAWIQFAAG*FGSSCCCGGCG
Trigger: GCCGCAGCCGCCGCAGCAGCAACTTGACCCAAACAACCCTGCAGCGAACTGGATCCACGCTCGCTCCACCCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS CCA 72 bp CCACCGCGGACCACGAGGCGGAGAACACGGACGATTTaGGGGCAAAACTACACGAGGCGAACTCGGCGGTGG +
Preference number: 6 (lower is better)
Translates to: PPRTTRRRTRTI*GQNYTRRTRRW
Trigger: CCACCGCCGAGTTCGCCTCGTGTAGTTTTGCCCCCAAATCGTCCGTGTTCTCCGCCTCGTGGTCCGCGGTGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS CCA 72 bp AGCACTCAGTCCTTTTGGAGGAGGAGGACGAGGAGGTaGAGGAGGAGGAGGAGGTGGAGGCTGCAGCGGGGG +
Preference number: 6 (lower is better)
Translates to: STQSFWRRRTRR*RRRRRWRLQRG
Trigger: CCCCCGCTGCAGCCTCCACCTCCTCCTCCTCCTCCACCTCCTCGTCCTCCTCCTCCAAAAGGACTGAGTGCT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS CAA 72 bp GCCACCGCGGACCACGAGGCGGAGAACACGGACGATTaGGGGGCAAAACTACACGAGGCGAACTCGGCGGTG +
Preference number: 6 (lower is better)
Translates to: ATADHEAENTDD*GAKLHEANSAV
Trigger: CACCGCCGAGTTCGCCTCGTGTAGTTTTGCCCCCAAATCGTCCGTGTTCTCCGCCTCGTGGTCCGCGGTGGC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10
CDS CAA 72 bp TGGAGCGAGCGTGGATCCAGTTCGCTGCAGGGTTGTTaGGGTCAAGTTGCTGCTGCGGCGGCTGCGGCGGCT +
Preference number: 6 (lower is better)
Translates to: WSERGSSSLQGC*GQVAAAAAAAA
Trigger: AGCCGCCGCAGCCGCCGCAGCAGCAACTTGACCCAAACAACCCTGCAGCGAACTGGATCCACGCTCGCTCCA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059272.10