RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HOXD8 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027102

Ensembl transcript IDs: ENSMUST00000019749.4, ENSMUST00000074721.6

Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGATTTCCTGAAGAACAGCAGAGGGTGGACGTACCAACCGACATCTaGGATGCATACAGCAAGCTGGCTTACAACACGGGAGCACAGGAG +
Preference number: 1 (lower is better)
Translates to: GFPEEQQRVDVPTDI*DAYSKLAYNTGAQE
Trigger: CTCCTGTGCTCCCGTGTTGTAAGCCAGCTTGCTGTATGCATCTCAGATGTCGGTTGGTACGTCCACCCTCTGCTGTTCTTCAGGAAATCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019749.4
3UTR TCA 90 bp ATGCTCTGGAGCGGCTGTTTACACTCAGGGCTCATTTCCAATCTGTaGGGCCACGGATTTCCTGAAGAACAGCAGAGGGTGGACGTACCA +
Preference number: 1 (lower is better)
Translates to: MLWSGCLHSGLISNL*GHGFPEEQQRVDVP
Trigger: TGGTACGTCCACCCTCTGCTGTTCTTCAGGAAATCCGTGGCCTCACAGATTGGAAATGAGCCCTGAGTGTAAACAGCCGCTCCAGAGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019749.4
3UTR CCA 90 bp AGAGGGTGGACGTACCAACCGACATCTGAGATGCATACAGCAAGCTaGCTTACAACACGGGAGCACAGGAGCAGTGCAAGAAGGATACAA +
Preference number: 1 (lower is better)
Translates to: RGWTYQPTSEMHTAS*LTTREHRSSARRIQ
Trigger: TTGTATCCTTCTTGCACTGCTCCTGTGCTCCCGTGTTGTAAGCCAGCTTGCTGTATGCATCTCAGATGTCGGTTGGTACGTCCACCCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019749.4
3UTR TCA 90 bp TTTACACTCAGGGCTCATTTCCAATCTGTGAGGCCACGGATTTCCTaGAGAACAGCAGAGGGTGGACGTACCAACCGACATCTGAGATGC +
Preference number: 1 (lower is better)
Translates to: FTLRAHFQSVRPRIS*RTAEGGRTNRHLRC
Trigger: GCATCTCAGATGTCGGTTGGTACGTCCACCCTCTGCTGTTCTTCAGGAAATCCGTGGCCTCACAGATTGGAAATGAGCCCTGAGTGTAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019749.4
3UTR CCA 90 bp TTTCCAATCTGTGAGGCCACGGATTTCCTGAAGAACAGCAGAGGGTaGACGTACCAACCGACATCTGAGATGCATACAGCAAGCTGGCTT +
Preference number: 1 (lower is better)
Translates to: FPICEATDFLKNSRG*TYQPTSEMHTASWL
Trigger: AAGCCAGCTTGCTGTATGCATCTCAGATGTCGGTTGGTACGTCCACCCTCTGCTGTTCTTCAGGAAATCCGTGGCCTCACAGATTGGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019749.4
3UTR TCA 90 bp TGGCTTACAACACGGGAGCACAGGAGCAGTGCAAGAAGGATACAATaGATATGGCACCTACTTGACAAAGCAGAAACACAGAGCATCGAG +
Preference number: 1 (lower is better)
Translates to: WLTTREHRSSARRIQ*IWHLLDKAETQSIE
Trigger: CTCGATGCTCTGTGTTTCTGCTTTGTCAAGTAGGTGCCATATTCATTGTATCCTTCTTGCACTGCTCCTGTGCTCCCGTGTTGTAAGCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019749.4
3UTR TCA 90 bp CTTTCAAAGCGCAGAAACCTCAAGAGCAGTGACATTAAGGTAGCTTaGAACACAGGTAAAGTCCGTTTCCAAAACACAAGAGGGAGGACC +
Preference number: 1 (lower is better)
Translates to: LSKRRNLKSSDIKVA*NTGKVRFQNTRGRT
Trigger: GGTCCTCCCTCTTGTGTTTTGGAAACGGACTTTACCTGTGTTTCAAGCTACCTTAATGTCACTGCTCTTGAGGTTTCTGCGCTTTGAAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019749.4
ENSMUST00000074721.6
3UTR GCA 90 bp CAACACTCTCCCAAGTTTAAGGAATCGGCAGCCTGGACAATACATTaGACTCTTCAGCTAATGTGCTTTTCCAATATTTGGCCCAGACTC +
Preference number: 1 (lower is better)
Translates to: QHSPKFKESAAWTIH*TLQLMCFSNIWPRL
Trigger: GAGTCTGGGCCAAATATTGGAAAAGCACATTAGCTGAAGAGTGCAATGTATTGTCCAGGCTGCCGATTCCTTAAACTTGGGAGAGTGTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019749.4
3UTR TCA 90 bp GCCATAATTTGTATGGACTACAGAAGCCCAACTAAATGTCGACTTTaGCATTATCCTCAAACTCCTGTCACTGGACAACACTCTCCCAAG +
Preference number: 1 (lower is better)
Translates to: AIICMDYRSPTKCRL*HYPQTPVTGQHSPK
Trigger: CTTGGGAGAGTGTTGTCCAGTGACAGGAGTTTGAGGATAATGTCAAAGTCGACATTTAGTTGGGCTTCTGTAGTCCATACAAATTATGGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019749.4
3UTR GCA 90 bp AAGGAATCGGCAGCCTGGACAATACATTGCACTCTTCAGCTAATGTaGTTTTCCAATATTTGGCCCAGACTCTTCCCTGACAAACATTTA +
Preference number: 1 (lower is better)
Translates to: KESAAWTIHCTLQLM*FSNIWPRLFPDKHL
Trigger: TAAATGTTTGTCAGGGAAGAGTCTGGGCCAAATATTGGAAAAGCACATTAGCTGAAGAGTGCAATGTATTGTCCAGGCTGCCGATTCCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019749.4
3UTR CCA 90 bp TGGACAATACATTGCACTCTTCAGCTAATGTGCTTTTCCAATATTTaGCCCAGACTCTTCCCTGACAAACATTTACAAAAATGCTCAAAG +
Preference number: 1 (lower is better)
Translates to: WTIHCTLQLMCFSNI*PRLFPDKHLQKCSK
Trigger: CTTTGAGCATTTTTGTAAATGTTTGTCAGGGAAGAGTCTGGGCCAAATATTGGAAAAGCACATTAGCTGAAGAGTGCAATGTATTGTCCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019749.4
3UTR CAA 90 bp AGCACAGGAGCAGTGCAAGAAGGATACAATGAATATGGCACCTACTaGACAAAGCAGAAACACAGAGCATCGAGACCTAGAAACCCCAGG +
Preference number: 2 (lower is better)
Translates to: STGAVQEGYNEYGTY*TKQKHRASRPRNPR
Trigger: CCTGGGGTTTCTAGGTCTCGATGCTCTGTGTTTCTGCTTTGTCAAGTAGGTGCCATATTCATTGTATCCTTCTTGCACTGCTCCTGTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019749.4
3UTR-3UTR TCA 90 bp CATACAGCAAGCTGGCTTACAACACGGGAGCACAGGAGCAGTGCAAGAAGGATAAATATGGCACCTACTTaGCAAAGCAGAAACACAGAG +
Preference number: 2 (lower is better)
Translates to: HTASWLTTREHRSSARRINMAPT*QSRNTE
Trigger: CTCTGTGTTTCTGCTTTGTCAAGTAGGTGCCATATT...TATCCTTCTTGCACTGCTCCTGTGCTCCCGTGTTGTAAGCCAGCTTGCTGTATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019749.4
3UTR-3UTR GCA 90 bp CTAGCGCTGATCATTAGGAAGTTTATGTTGTTGAGGCAAACCACCAGCTCAGACGGACAGCTCAAGGACTaGTTCTATGCGATACTACAA +
Preference number: 2 (lower is better)
Translates to: LALIIRKFMLLRQTTSSDGQLKD*FYAILQ
Trigger: TTGTAGTATCGCATAGAAGCAGTCCTTGAGCTGTCC...GTCTGAGCTGGTGGTTTGCCTCAACAACATAAACTTCCTAATGATCAGCGCTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019749.4
ENSMUST00000074721.6
3UTR GCA 72 bp ACAGCAGAGGGTGGACGTACCAACCGACATCTGAGATaGATACAGCAAGCTGGCTTACAACACGGGAGCACA +
Preference number: 3 (lower is better)
Translates to: TAEGGRTNRHLR*IQQAGLQHGST
Trigger: TGTGCTCCCGTGTTGTAAGCCAGCTTGCTGTATGCATCTCAGATGTCGGTTGGTACGTCCACCCTCTGCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019749.4
3UTR TCA 72 bp GAAGAACAGCAGAGGGTGGACGTACCAACCGACATCTaGGATGCATACAGCAAGCTGGCTTACAACACGGGA +
Preference number: 3 (lower is better)
Translates to: EEQQRVDVPTDI*DAYSKLAYNTG
Trigger: TCCCGTGTTGTAAGCCAGCTTGCTGTATGCATCTCAGATGTCGGTTGGTACGTCCACCCTCTGCTGTTCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019749.4
3UTR TCA 72 bp AGCGGCTGTTTACACTCAGGGCTCATTTCCAATCTGTaGGGCCACGGATTTCCTGAAGAACAGCAGAGGGTG +
Preference number: 3 (lower is better)
Translates to: SGCLHSGLISNL*GHGFPEEQQRV
Trigger: CACCCTCTGCTGTTCTTCAGGAAATCCGTGGCCTCACAGATTGGAAATGAGCCCTGAGTGTAAACAGCCGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019749.4
3UTR CCA 72 bp ACGTACCAACCGACATCTGAGATGCATACAGCAAGCTaGCTTACAACACGGGAGCACAGGAGCAGTGCAAGA +
Preference number: 3 (lower is better)
Translates to: TYQPTSEMHTAS*LTTREHRSSAR
Trigger: TCTTGCACTGCTCCTGTGCTCCCGTGTTGTAAGCCAGCTTGCTGTATGCATCTCAGATGTCGGTTGGTACGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019749.4
3UTR CCA 72 bp TGTGAGGCCACGGATTTCCTGAAGAACAGCAGAGGGTaGACGTACCAACCGACATCTGAGATGCATACAGCA +
Preference number: 3 (lower is better)
Translates to: CEATDFLKNSRG*TYQPTSEMHTA
Trigger: TGCTGTATGCATCTCAGATGTCGGTTGGTACGTCCACCCTCTGCTGTTCTTCAGGAAATCCGTGGCCTCACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019749.4
3UTR TCA 72 bp GGAGGACCGGTGGTGTCCACCAGTATATACTTATACTaGTCATCAGTCTTAATAGTCTGTGGTAGAAGTGTA +
Preference number: 3 (lower is better)
Translates to: GGPVVSTSIYLY*SSVLIVCGRSV
Trigger: TACACTTCTACCACAGACTATTAAGACTGATGATCAGTATAAGTATATACTGGTGGACACCACCGGTCCTCC
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019749.4
ENSMUST00000074721.6
3UTR TCA 72 bp CGCAGAAACCTCAAGAGCAGTGACATTAAGGTAGCTTaGAACACAGGTAAAGTCCGTTTCCAAAACACAAGA +
Preference number: 3 (lower is better)
Translates to: RRNLKSSDIKVA*NTGKVRFQNTR
Trigger: TCTTGTGTTTTGGAAACGGACTTTACCTGTGTTTCAAGCTACCTTAATGTCACTGCTCTTGAGGTTTCTGCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019749.4
ENSMUST00000074721.6
3UTR TCA 72 bp TGTATGGACTACAGAAGCCCAACTAAATGTCGACTTTaGCATTATCCTCAAACTCCTGTCACTGGACAACAC +
Preference number: 3 (lower is better)
Translates to: CMDYRSPTKCRL*HYPQTPVTGQH
Trigger: GTGTTGTCCAGTGACAGGAGTTTGAGGATAATGTCAAAGTCGACATTTAGTTGGGCTTCTGTAGTCCATACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019749.4
3UTR TCA 72 bp CAGTGCAAGAAGGATACAATGAATATGGCACCTACTTaGCAAAGCAGAAACACAGAGCATCGAGACCTAGAA +
Preference number: 3 (lower is better)
Translates to: QCKKDTMNMAPT*QSRNTEHRDLE
Trigger: TTCTAGGTCTCGATGCTCTGTGTTTCTGCTTTGTCAAGTAGGTGCCATATTCATTGTATCCTTCTTGCACTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019749.4
3UTR GCA 72 bp CCCAAGTTTAAGGAATCGGCAGCCTGGACAATACATTaGACTCTTCAGCTAATGTGCTTTTCCAATATTTGG +
Preference number: 3 (lower is better)
Translates to: PKFKESAAWTIH*TLQLMCFSNIW
Trigger: CCAAATATTGGAAAAGCACATTAGCTGAAGAGTGCAATGTATTGTCCAGGCTGCCGATTCCTTAAACTTGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019749.4
3UTR GCA 72 bp GTATCAAATTACCCTTCTATAGGACAGCTCAAGGACTaGTTCTATGCGATACTACAAACTATTCTCTTTAAA +
Preference number: 3 (lower is better)
Translates to: VSNYPSIGQLKD*FYAILQTILFK
Trigger: TTTAAAGAGAATAGTTTGTAGTATCGCATAGAAGCAGTCCTTGAGCTGTCCTATAGAAGGGTAATTTGATAC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019749.4
ENSMUST00000074721.6
CDS-3UTR TCA 90 bp CAGGTAAAGTCCGTTTCCAAAACACAAGAGGGAGGACCGGTGGTGTCCACCAGTTTCGCGGGCTCCCCGTaGCAGGCAATCCCGCCGCAG +
Preference number: 4 (lower is better)
Translates to: QVKSVSKTQEGGPVVSTSFAGSP*QAIPPQ
Trigger: CTGCGGCGGGATTGCCTGTCACGGGGAGCCCGCGAA...ACTGGTGGACACCACCGGTCCTCCCTCTTGTGTTTTGGAAACGGACTTTACCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019749.4
ENSMUST00000074721.6
CDS-3UTR GCA 90 bp GAAACACAGGTAAAGTCCGTTTCCAAAACACAAGAGGGAGGACCGGTGGTGTCCAGCCGGCGGCGCTGTTaGCATAGAGCTGCAGGGCGG +
Preference number: 4 (lower is better)
Translates to: ETQVKSVSKTQEGGPVVSSRRRC*HRAAGR
Trigger: CCGCCCTGCAGCTCTATGGCAACAGCGCCGCCGGCT...GGACACCACCGGTCCTCCCTCTTGTGTTTTGGAAACGGACTTTACCTGTGTTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019749.4
ENSMUST00000074721.6
CDS-3UTR TCA 90 bp AGGTCCGTATCAAATTACCCTTCTATAGGACAGCTCAAGGACTGCTTCTATGCGCGTAGTAAGTGGGATTaGTGGCCTCGCCCGCCGCGG +
Preference number: 4 (lower is better)
Translates to: RSVSNYPSIGQLKDCFYARSKWD*WPRPPR
Trigger: CCGCGGCGGGCGAGGCCATCAATCCCACTTACTACG...CGCATAGAAGCAGTCCTTGAGCTGTCCTATAGAAGGGTAATTTGATACGGACCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019749.4
ENSMUST00000074721.6
CDS-3UTR TCA 90 bp TTACCCTTCTATAGGACAGCTCAAGGACTGCTTCTATGCGATACTACAAACTATTTCGCGGGCTCCCCGTaGCAGGCAATCCCGCCGCAG +
Preference number: 4 (lower is better)
Translates to: LPFYRTAQGLLLCDTTNYFAGSP*QAIPPQ
Trigger: CTGCGGCGGGATTGCCTGTCACGGGGAGCCCGCGAA...ATAGTTTGTAGTATCGCATAGAAGCAGTCCTTGAGCTGTCCTATAGAAGGGTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019749.4
ENSMUST00000074721.6
CDS-3UTR TCA 90 bp CAGGTAAAGTCCGTTTCCAAAACACAAGAGGGAGGACCGGTGGTGTCCACCAGTGAAGGAGACGAGCTCTaGTTTAAGTGGTCTGGGTCC +
Preference number: 4 (lower is better)
Translates to: QVKSVSKTQEGGPVVSTSEGDEL*FKWSGS
Trigger: GGACCCAGACCACTTAAATCAGAGCTCGTCTCCTTC...ACTGGTGGACACCACCGGTCCTCCCTCTTGTGTTTTGGAAACGGACTTTACCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019749.4
ENSMUST00000074721.6
CDS-3UTR CCA 90 bp AAATTACCCTTCTATAGGACAGCTCAAGGACTGCTTCTATGCGATACTACAAACAGGGTGCGGAGGAGGTaGGGCGGCCTGGTAGGCAGC +
Preference number: 4 (lower is better)
Translates to: KLPFYRTAQGLLLCDTTNRVRRR*GGLVGS
Trigger: GCTGCCTACCAGGCCGCCCCACCTCCTCCGCACCCT...GTTTGTAGTATCGCATAGAAGCAGTCCTTGAGCTGTCCTATAGAAGGGTAATTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019749.4
ENSMUST00000074721.6
CDS-3UTR GCA 90 bp GAAACACAGGTAAAGTCCGTTTCCAAAACACAAGAGGGAGGACCGGTGGTGTCCGCCGCTGACCTCGGGTaGAAAATGACAGTCGTAGTA +
Preference number: 4 (lower is better)
Translates to: ETQVKSVSKTQEGGPVVSAADLG*KMTVVV
Trigger: TACTACGACTGTCATTTTGCACCCGAGGTCAGCGGC...GGACACCACCGGTCCTCCCTCTTGTGTTTTGGAAACGGACTTTACCTGTGTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019749.4
ENSMUST00000074721.6
CDS-3UTR CCA 90 bp ATTAGGAAGTTTATGTTGTTGAGGCAAACCACCAGCTCAGACGTTAAAAATTACAGGGTGCGGAGGAGGTaGGGCGGCCTGGTAGGCAGC +
Preference number: 4 (lower is better)
Translates to: IRKFMLLRQTTSSDVKNYRVRRR*GGLVGS
Trigger: GCTGCCTACCAGGCCGCCCCACCTCCTCCGCACCCT...GTAATTTTTAACGTCTGAGCTGGTGGTTTGCCTCAACAACATAAACTTCCTAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019749.4
ENSMUST00000074721.6
CDS-3UTR TCA 90 bp AGGAAGTTTATGTTGTTGAGGCAAACCACCAGCTCAGACGTTAAAAATTACCATCGTAGTAAGTGGGATTaGTGGCCTCGCCCGCCGCGG +
Preference number: 4 (lower is better)
Translates to: RKFMLLRQTTSSDVKNYHRSKWD*WPRPPR
Trigger: CCGCGGCGGGCGAGGCCATCAATCCCACTTACTACG...ATGGTAATTTTTAACGTCTGAGCTGGTGGTTTGCCTCAACAACATAAACTTCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019749.4
ENSMUST00000074721.6
CDS-3UTR GCA 90 bp AAGTTTATGTTGTTGAGGCAAACCACCAGCTCAGACGTTAAAAATTACCATTATAGCCGGCGGCGCTGTTaGCATAGAGCTGCAGGGCGG +
Preference number: 4 (lower is better)
Translates to: KFMLLRQTTSSDVKNYHYSRRRC*HRAAGR
Trigger: CCGCCCTGCAGCTCTATGGCAACAGCGCCGCCGGCT...ATAATGGTAATTTTTAACGTCTGAGCTGGTGGTTTGCCTCAACAACATAAACTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019749.4
ENSMUST00000074721.6
CDS-3UTR CCA 90 bp CAAACTCCTGTCACTGGACAACACTCTCCCAAGTTTAAGGAATCGGCAGCCTGGCGCCAATATTACCACTaGACGATTTACAGTCAGGAT +
Preference number: 4 (lower is better)
Translates to: QTPVTGQHSPKFKESAAWRQYYH*TIYSQD
Trigger: ATCCTGACTGTAAATCGTCCAGTGGTAATATTGGCG...CCAGGCTGCCGATTCCTTAAACTTGGGAGAGTGTTGTCCAGTGACAGGAGTTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019749.4
CDS-3UTR CCA 90 bp AGGAAGTTTATGTTGTTGAGGCAAACCACCAGCTCAGACGTTAAAAATTACCATCCGCCGCCTTGTACTTaGAGTACAGCGGGTTCACGA +
Preference number: 4 (lower is better)
Translates to: RKFMLLRQTTSSDVKNYHPPPCT*STAGSR
Trigger: TCGTGAACCCGCTGTACTCCAAGTACAAGGCGGCGG...ATGGTAATTTTTAACGTCTGAGCTGGTGGTTTGCCTCAACAACATAAACTTCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019749.4
ENSMUST00000074721.6
CDS-3UTR CCA 90 bp CACAAGGTCCGTATCAAATTACCCTTCTATAGGACAGCTCAAGGACTGCTTCTAACCAGGAGCTGCTTGTaGTCTCATCCAGGGAAACAT +
Preference number: 4 (lower is better)
Translates to: HKVRIKLPFYRTAQGLLLTRSCL*SHPGKH
Trigger: ATGTTTCCCTGGATGAGACCACAAGCAGCTCCTGGT...TAGAAGCAGTCCTTGAGCTGTCCTATAGAAGGGTAATTTGATACGGACCTTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019749.4
CDS-3UTR GCA 90 bp GGTGGTGTCCACCAGTATATACTTATACTGATCATCAGTCTTAATAGTCTGTGGGCCGCTGACCTCGGGTaGAAAATGACAGTCGTAGTA +
Preference number: 4 (lower is better)
Translates to: GGVHQYILILIISLNSLWAADLG*KMTVVV
Trigger: TACTACGACTGTCATTTTGCACCCGAGGTCAGCGGC...CCACAGACTATTAAGACTGATGATCAGTATAAGTATATACTGGTGGACACCACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019749.4
ENSMUST00000074721.6
CDS-3UTR GCA 90 bp GGACAGCTCAAGGACTGCTTCTATGCGATACTACAAACTATTCTCTTTAAAAACACCAGCTCGGCCTCTTaGTGGGTCGTAAAAATCGGC +
Preference number: 4 (lower is better)
Translates to: GQLKDCFYAILQTILFKNTSSAS*WVVKIG
Trigger: GCCGATTTTTACGACCCAGCAAGAGGCCGAGCTGGT...GTTTTTAAAGAGAATAGTTTGTAGTATCGCATAGAAGCAGTCCTTGAGCTGTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000019749.4
ENSMUST00000074721.6
CDS-3UTR CCA 90 bp GTGAGCCAGAAGACACCTGAACCATCGTTACAAAAGCAGAAAGAAAAATATAAACCGCCGCCTTGTACTTaGAGTACAGCGGGTTCACGA +
Preference number: 4 (lower is better)
Translates to: VSQKTPEPSLQKQKEKYKPPPCT*STAGSR
Trigger: TCGTGAACCCGCTGTACTCCAAGTACAAGGCGGCGG...TTTATATTTTTCTTTCTGCTTTTGTAACGATGGTTCAGGTGTCTTCTGGCTCAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019749.4
CDS-3UTR CCA 90 bp TTACCCTTCTATAGGACAGCTCAAGGACTGCTTCTATGCGATACTACAAACTATAGCTCGGCCTCTTGCTaGGTCGTAAAAATCGGCTGT +
Preference number: 4 (lower is better)
Translates to: LPFYRTAQGLLLCDTTNYSSASC*VVKIGC
Trigger: ACAGCCGATTTTTACGACCCAGCAAGAGGCCGAGCT...ATAGTTTGTAGTATCGCATAGAAGCAGTCCTTGAGCTGTCCTATAGAAGGGTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019749.4
ENSMUST00000074721.6
3UTR CAA 72 bp GCAGTGCAAGAAGGATACAATGAATATGGCACCTACTaGACAAAGCAGAAACACAGAGCATCGAGACCTAGA +
Preference number: 4 (lower is better)
Translates to: AVQEGYNEYGTY*TKQKHRASRPR
Trigger: TCTAGGTCTCGATGCTCTGTGTTTCTGCTTTGTCAAGTAGGTGCCATATTCATTGTATCCTTCTTGCACTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019749.4
CDS-3UTR CCA 90 bp GGACAGCTCAAGGACTGCTTCTATGCGATACTACAAACTATTCTCTTTAAAAACCCGAGACTTCCTTTTTaGGGTCTCCATCCTTTGCCT +
Preference number: 4 (lower is better)
Translates to: GQLKDCFYAILQTILFKNPRLPF*GLHPLP
Trigger: AGGCAAAGGATGGAGACCCCAAAAAGGAAGTCTCGG...GTTTTTAAAGAGAATAGTTTGTAGTATCGCATAGAAGCAGTCCTTGAGCTGTCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000019749.4
ENSMUST00000074721.6
CDS-3UTR CCA 90 bp TTACCCTTCTATAGGACAGCTCAAGGACTGCTTCTATGCGATACTACAAACTATTCTACCAGGAGCTTGTaGTCTCATCCAGGGAAACAT +
Preference number: 4 (lower is better)
Translates to: LPFYRTAQGLLLCDTTNYSTRSL*SHPGKH
Trigger: ATGTTTCCCTGGATGAGACCACAAGCTCCTGGTAGA...ATAGTTTGTAGTATCGCATAGAAGCAGTCCTTGAGCTGTCCTATAGAAGGGTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074721.6
CDS-3UTR CCA 90 bp ATTAGGAAGTTTATGTTGTTGAGGCAAACCACCAGCTCAGACGTTAAAAATTACCCGAGACTTCCTTTTTaGGGTCTCCATCCTTTGCCT +
Preference number: 4 (lower is better)
Translates to: IRKFMLLRQTTSSDVKNYPRLPF*GLHPLP
Trigger: AGGCAAAGGATGGAGACCCCAAAAAGGAAGTCTCGG...GTAATTTTTAACGTCTGAGCTGGTGGTTTGCCTCAACAACATAAACTTCCTAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000019749.4
ENSMUST00000074721.6
CDS-3UTR CCA 90 bp TTACCCTTCTATAGGACAGCTCAAGGACTGCTTCTATGCGATACTACAAACTATCGCCAATATTACCACTaGACGATTTACAGTCAGGAT +
Preference number: 4 (lower is better)
Translates to: LPFYRTAQGLLLCDTTNYRQYYH*TIYSQD
Trigger: ATCCTGACTGTAAATCGTCCAGTGGTAATATTGGCG...ATAGTTTGTAGTATCGCATAGAAGCAGTCCTTGAGCTGTCCTATAGAAGGGTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019749.4
ENSMUST00000074721.6
3UTR CAA 72 bp TTCAATCATCTAGCGCTGATCATTAGGAAGTTTATGTaGTTGAGGCAAACCACCAGCTCAGACGTTAAAAAT +
Preference number: 4 (lower is better)
Translates to: FNHLALIIRKFM*LRQTTSSDVKN
Trigger: ATTTTTAACGTCTGAGCTGGTGGTTTGCCTCAACAACATAAACTTCCTAATGATCAGCGCTAGATGATTGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019749.4
ENSMUST00000074721.6
CDS GCA 90 bp GCCATAGAGCTGCAGGGCGGCGGCGTGGCGGCCGCTGACCTCGGGTaGAAAATGACAGTCGTAGTAAGTGGGATTGATGGCCTCGCCCGC +
Preference number: 5 (lower is better)
Translates to: AIELQGGGVAAADLG*KMTVVVSGIDGLAR
Trigger: GCGGGCGAGGCCATCAATCCCACTTACTACGACTGTCATTTTGCACCCGAGGTCAGCGGCCGCCACGCCGCCGCCCTGCAGCTCTATGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019749.4
ENSMUST00000074721.6
CDS-3UTR CAA 90 bp GTCCGTTTCCAAAACACAAGAGGGAGGACCGGTGGTGTCCACCAGTATATACTTGCCGCGGCCGCCGCCTaGTACTTGGAGTACAGCGGG +
Preference number: 5 (lower is better)
Translates to: VRFQNTRGRTGGVHQYILAAAAA*YLEYSG
Trigger: CCCGCTGTACTCCAAGTACAAGGCGGCGGCCGCGGC...AAGTATATACTGGTGGACACCACCGGTCCTCCCTCTTGTGTTTTGGAAACGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019749.4
ENSMUST00000074721.6
CDS-3UTR CAA 90 bp TCCGTTTCCAAAACACAAGAGGGAGGACCGGTGGTGTCCACCAGTATATACTTAGCCGCCGCCTTGTACTaGGAGTACAGCGGGTTCACG +
Preference number: 5 (lower is better)
Translates to: SVSKTQEGGPVVSTSIYLAAALY*EYSGFT
Trigger: CGTGAACCCGCTGTACTCCAAGTACAAGGCGGCGGC...TAAGTATATACTGGTGGACACCACCGGTCCTCCCTCTTGTGTTTTGGAAACGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019749.4
ENSMUST00000074721.6
CDS-3UTR CAA 90 bp AAATTACCCTTCTATAGGACAGCTCAAGGACTGCTTCTATGCGATACTACAAACGCCGCGGCCGCCGCCTaGTACTTGGAGTACAGCGGG +
Preference number: 5 (lower is better)
Translates to: KLPFYRTAQGLLLCDTTNAAAAA*YLEYSG
Trigger: CCCGCTGTACTCCAAGTACAAGGCGGCGGCCGCGGC...GTTTGTAGTATCGCATAGAAGCAGTCCTTGAGCTGTCCTATAGAAGGGTAATTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019749.4
ENSMUST00000074721.6
CDS-3UTR CAA 90 bp ATCTGTGAGGCCACGGATTTCCTGAAGAACAGCAGAGGGTGGACGTACCAACCGCATCCAGGGAAACATTaGAGAAGGAGACGAGCTCTG +
Preference number: 5 (lower is better)
Translates to: ICEATDFLKNSRGWTYQPHPGKH*RRRRAL
Trigger: CAGAGCTCGTCTCCTTCTCAAATGTTTCCCTGGATG...CGGTTGGTACGTCCACCCTCTGCTGTTCTTCAGGAAATCCGTGGCCTCACAGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019749.4
CDS-3UTR CAA 90 bp CAGGTAAAGTCCGTTTCCAAAACACAAGAGGGAGGACCGGTGGTGTCCACCAGTTTTACAGTCAGGATATaGTACCAGCTCGGCCTCTTG +
Preference number: 5 (lower is better)
Translates to: QVKSVSKTQEGGPVVSTSFTVRI*YQLGLL
Trigger: CAAGAGGCCGAGCTGGTACAATATCCTGACTGTAAA...ACTGGTGGACACCACCGGTCCTCCCTCTTGTGTTTTGGAAACGGACTTTACCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019749.4
ENSMUST00000074721.6
CDS-3UTR CAA 90 bp AAGTCCGTTTCCAAAACACAAGAGGGAGGACCGGTGGTGTCCACCAGTATATACGAAGCGACTGTAGGTTaGTCTTCCTCTCCGTCTACC +
Preference number: 5 (lower is better)
Translates to: KSVSKTQEGGPVVSTSIYEATVG*SSSPST
Trigger: GGTAGACGGAGAGGAAGACAAACCTACAGTCGCTTC...GTATATACTGGTGGACACCACCGGTCCTCCCTCTTGTGTTTTGGAAACGGACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019749.4
ENSMUST00000074721.6
CDS-3UTR CAA 90 bp CTAGCGCTGATCATTAGGAAGTTTATGTTGTTGAGGCAAACCACCAGCTCAGACTCTACCAGGAGCTGCTaGTGGTCTCATCCAGGGAAA +
Preference number: 5 (lower is better)
Translates to: LALIIRKFMLLRQTTSSDSTRSC*WSHPGK
Trigger: TTTCCCTGGATGAGACCACAAGCAGCTCCTGGTAGA...GTCTGAGCTGGTGGTTTGCCTCAACAACATAAACTTCCTAATGATCAGCGCTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019749.4
CDS-3UTR CAA 90 bp GTGAGCCAGAAGACACCTGAACCATCGTTACAAAAGCAGAAAGAAAAATATAAAGCCGCCGCCTTGTACTaGGAGTACAGCGGGTTCACG +
Preference number: 5 (lower is better)
Translates to: VSQKTPEPSLQKQKEKYKAAALY*EYSGFT
Trigger: CGTGAACCCGCTGTACTCCAAGTACAAGGCGGCGGC...TTTATATTTTTCTTTCTGCTTTTGTAACGATGGTTCAGGTGTCTTCTGGCTCAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019749.4
CDS-3UTR CAA 90 bp AGGTCCGTATCAAATTACCCTTCTATAGGACAGCTCAAGGACTGCTTCTATGCGCATCCAGGGAAACATTaGAGAAGGAGACGAGCTCTG +
Preference number: 5 (lower is better)
Translates to: RSVSNYPSIGQLKDCFYAHPGKH*RRRRAL
Trigger: CAGAGCTCGTCTCCTTCTCAAATGTTTCCCTGGATG...CGCATAGAAGCAGTCCTTGAGCTGTCCTATAGAAGGGTAATTTGATACGGACCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019749.4
ENSMUST00000074721.6
CDS-3UTR CAA 90 bp GTGAGCCAGAAGACACCTGAACCATCGTTACAAAAGCAGAAAGAAAAATATAAATACCAGCTCGGCCTCTaGCTGGGTCGTAAAAATCGG +
Preference number: 5 (lower is better)
Translates to: VSQKTPEPSLQKQKEKYKYQLGL*LGRKNR
Trigger: CCGATTTTTACGACCCAGCAAGAGGCCGAGCTGGTA...TTTATATTTTTCTTTCTGCTTTTGTAACGATGGTTCAGGTGTCTTCTGGCTCAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000019749.4
CDS-3UTR CAA 90 bp AAAAATATAGCCACAAGGTCCGTATCAAATTACCCTTCTATAGGACAGCTCAAGGAAGCGACTGTAGGTTaGTCTTCCTCTCCGTCTACC +
Preference number: 5 (lower is better)
Translates to: KNIATRSVSNYPSIGQLKEATVG*SSSPST
Trigger: GGTAGACGGAGAGGAAGACAAACCTACAGTCGCTTC...CTTGAGCTGTCCTATAGAAGGGTAATTTGATACGGACCTTGTGGCTATATTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019749.4
ENSMUST00000074721.6
CDS-3UTR CAA 90 bp AAGTTTATGTTGTTGAGGCAAACCACCAGCTCAGACGTTAAAAATTACCATTATCCGTCTACCAGGAGCTaGTGGTCTCATCCAGGGAAA +
Preference number: 5 (lower is better)
Translates to: KFMLLRQTTSSDVKNYHYPSTRS*WSHPGK
Trigger: TTTCCCTGGATGAGACCACAAGCTCCTGGTAGACGG...ATAATGGTAATTTTTAACGTCTGAGCTGGTGGTTTGCCTCAACAACATAAACTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000074721.6
CDS-3UTR CAA 90 bp AGGAAGTTTATGTTGTTGAGGCAAACCACCAGCTCAGACGTTAAAAATTACCATTTTACAGTCAGGATATaGTACCAGCTCGGCCTCTTG +
Preference number: 5 (lower is better)
Translates to: RKFMLLRQTTSSDVKNYHFTVRI*YQLGLL
Trigger: CAAGAGGCCGAGCTGGTACAATATCCTGACTGTAAA...ATGGTAATTTTTAACGTCTGAGCTGGTGGTTTGCCTCAACAACATAAACTTCCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019749.4
ENSMUST00000074721.6
CDS-3UTR CAA 90 bp AAATATAGCCACAAGGTCCGTATCAAATTACCCTTCTATAGGACAGCTCAAGGAGCAGGAAACTTGTCTTaGTTGTTCTCCTTTTTCCAT +
Preference number: 5 (lower is better)
Translates to: KYSHKVRIKLPFYRTAQGAGNLS*LFSFFH
Trigger: ATGGAAAAAGGAGAACAACAAAGACAAGTTTCCTGC...TCCTTGAGCTGTCCTATAGAAGGGTAATTTGATACGGACCTTGTGGCTATATTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019749.4
ENSMUST00000074721.6
CDS-3UTR CAA 90 bp AATTACCCTTCTATAGGACAGCTCAAGGACTGCTTCTATGCGATACTACAAACTGCAGGAAACTTGTCTTaGTTGTTCTCCTTTTTCCAT +
Preference number: 5 (lower is better)
Translates to: NYPSIGQLKDCFYAILQTAGNLS*LFSFFH
Trigger: ATGGAAAAAGGAGAACAACAAAGACAAGTTTCCTGC...AGTTTGTAGTATCGCATAGAAGCAGTCCTTGAGCTGTCCTATAGAAGGGTAATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019749.4
ENSMUST00000074721.6
CDS GCA 72 bp GGTGCGGGTGCGCGTGCGGGAAGCCGGCGGCGCTGTTaGCATAGAGCTGCAGGGCGGCGGCGTGGCGGCCGC +
Preference number: 6 (lower is better)
Translates to: GAGARAGSRRRC*HRAAGRRRGGR
Trigger: GCGGCCGCCACGCCGCCGCCCTGCAGCTCTATGGCAACAGCGCCGCCGGCTTCCCGCACGCGCACCCGCACC
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019749.4
ENSMUST00000074721.6
CDS GCA 72 bp GAGGAGGTGGGGCGGCCTGGTAGGCAGCGGTCGGGCTaGCCGCGCCGGCGTGGAAGTAGTCCTGGCCGGGCC +
Preference number: 6 (lower is better)
Translates to: EEVGRPGRQRSG*PRRRGSSPGRA
Trigger: GGCCCGGCCAGGACTACTTCCACGCCGGCGCGGGCAGCCCGACCGCTGCCTACCAGGCCGCCCCACCTCCTC
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019749.4
ENSMUST00000074721.6
CDS CAA 72 bp GCCGCCGCAGCCGCCGCCGCCGCCGCGGCCGCCGCCTaGTACTTGGAGTACAGCGGGTTCACGAAGTACGAG +
Preference number: 6 (lower is better)
Translates to: AAAAAAAAAAAA*YLEYSGFTKYE
Trigger: CTCGTACTTCGTGAACCCGCTGTACTCCAAGTACAAGGCGGCGGCCGCGGCGGCGGCGGCGGCTGCGGCGGC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019749.4
ENSMUST00000074721.6
CDS GCA 72 bp CTGCAGGGCGGCGGCGTGGCGGCCGCTGACCTCGGGTaGAAAATGACAGTCGTAGTAAGTGGGATTGATGGC +
Preference number: 6 (lower is better)
Translates to: LQGGGVAAADLG*KMTVVVSGIDG
Trigger: GCCATCAATCCCACTTACTACGACTGTCATTTTGCACCCGAGGTCAGCGGCCGCCACGCCGCCGCCCTGCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019749.4
ENSMUST00000074721.6
CDS CCA 72 bp TTACAGTCAGGATATTGTACCAGCTCGGCCTCTTGCTaGGTCGTAAAAATCGGCTGTCTCTGTAAGTTATCG +
Preference number: 6 (lower is better)
Translates to: LQSGYCTSSASC*VVKIGCLCKLS
Trigger: CGATAACTTACAGAGACAGCCGATTTTTACGACCCAGCAAGAGGCCGAGCTGGTACAATATCCTGACTGTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019749.4
ENSMUST00000074721.6