Pregenerated sensors for HOXD8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027102Ensembl transcript IDs: ENSMUST00000019749.4, ENSMUST00000074721.6
Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR TCA 90 bp | GGATTTCCTGAAGAACAGCAGAGGGTGGACGTACCAACCGACATCTaGGATGCATACAGCAAGCTGGCTTACAACACGGGAGCACAGGAG | + |
Preference number: 1 (lower is better) Translates to: GFPEEQQRVDVPTDI*DAYSKLAYNTGAQE Trigger: CTCCTGTGCTCCCGTGTTGTAAGCCAGCTTGCTGTATGCATCTCAGATGTCGGTTGGTACGTCCACCCTCTGCTGTTCTTCAGGAAATCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019749.4 |
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3UTR TCA 90 bp | ATGCTCTGGAGCGGCTGTTTACACTCAGGGCTCATTTCCAATCTGTaGGGCCACGGATTTCCTGAAGAACAGCAGAGGGTGGACGTACCA | + |
Preference number: 1 (lower is better) Translates to: MLWSGCLHSGLISNL*GHGFPEEQQRVDVP Trigger: TGGTACGTCCACCCTCTGCTGTTCTTCAGGAAATCCGTGGCCTCACAGATTGGAAATGAGCCCTGAGTGTAAACAGCCGCTCCAGAGCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019749.4 |
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3UTR CCA 90 bp | AGAGGGTGGACGTACCAACCGACATCTGAGATGCATACAGCAAGCTaGCTTACAACACGGGAGCACAGGAGCAGTGCAAGAAGGATACAA | + |
Preference number: 1 (lower is better) Translates to: RGWTYQPTSEMHTAS*LTTREHRSSARRIQ Trigger: TTGTATCCTTCTTGCACTGCTCCTGTGCTCCCGTGTTGTAAGCCAGCTTGCTGTATGCATCTCAGATGTCGGTTGGTACGTCCACCCTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019749.4 |
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3UTR TCA 90 bp | TTTACACTCAGGGCTCATTTCCAATCTGTGAGGCCACGGATTTCCTaGAGAACAGCAGAGGGTGGACGTACCAACCGACATCTGAGATGC | + |
Preference number: 1 (lower is better) Translates to: FTLRAHFQSVRPRIS*RTAEGGRTNRHLRC Trigger: GCATCTCAGATGTCGGTTGGTACGTCCACCCTCTGCTGTTCTTCAGGAAATCCGTGGCCTCACAGATTGGAAATGAGCCCTGAGTGTAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019749.4 |
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3UTR CCA 90 bp | TTTCCAATCTGTGAGGCCACGGATTTCCTGAAGAACAGCAGAGGGTaGACGTACCAACCGACATCTGAGATGCATACAGCAAGCTGGCTT | + |
Preference number: 1 (lower is better) Translates to: FPICEATDFLKNSRG*TYQPTSEMHTASWL Trigger: AAGCCAGCTTGCTGTATGCATCTCAGATGTCGGTTGGTACGTCCACCCTCTGCTGTTCTTCAGGAAATCCGTGGCCTCACAGATTGGAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019749.4 |
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3UTR TCA 90 bp | TGGCTTACAACACGGGAGCACAGGAGCAGTGCAAGAAGGATACAATaGATATGGCACCTACTTGACAAAGCAGAAACACAGAGCATCGAG | + |
Preference number: 1 (lower is better) Translates to: WLTTREHRSSARRIQ*IWHLLDKAETQSIE Trigger: CTCGATGCTCTGTGTTTCTGCTTTGTCAAGTAGGTGCCATATTCATTGTATCCTTCTTGCACTGCTCCTGTGCTCCCGTGTTGTAAGCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019749.4 |
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3UTR TCA 90 bp | CTTTCAAAGCGCAGAAACCTCAAGAGCAGTGACATTAAGGTAGCTTaGAACACAGGTAAAGTCCGTTTCCAAAACACAAGAGGGAGGACC | + |
Preference number: 1 (lower is better) Translates to: LSKRRNLKSSDIKVA*NTGKVRFQNTRGRT Trigger: GGTCCTCCCTCTTGTGTTTTGGAAACGGACTTTACCTGTGTTTCAAGCTACCTTAATGTCACTGCTCTTGAGGTTTCTGCGCTTTGAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019749.4 ENSMUST00000074721.6 |
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3UTR GCA 90 bp | CAACACTCTCCCAAGTTTAAGGAATCGGCAGCCTGGACAATACATTaGACTCTTCAGCTAATGTGCTTTTCCAATATTTGGCCCAGACTC | + |
Preference number: 1 (lower is better) Translates to: QHSPKFKESAAWTIH*TLQLMCFSNIWPRL Trigger: GAGTCTGGGCCAAATATTGGAAAAGCACATTAGCTGAAGAGTGCAATGTATTGTCCAGGCTGCCGATTCCTTAAACTTGGGAGAGTGTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019749.4 |
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3UTR TCA 90 bp | GCCATAATTTGTATGGACTACAGAAGCCCAACTAAATGTCGACTTTaGCATTATCCTCAAACTCCTGTCACTGGACAACACTCTCCCAAG | + |
Preference number: 1 (lower is better) Translates to: AIICMDYRSPTKCRL*HYPQTPVTGQHSPK Trigger: CTTGGGAGAGTGTTGTCCAGTGACAGGAGTTTGAGGATAATGTCAAAGTCGACATTTAGTTGGGCTTCTGTAGTCCATACAAATTATGGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019749.4 |
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3UTR GCA 90 bp | AAGGAATCGGCAGCCTGGACAATACATTGCACTCTTCAGCTAATGTaGTTTTCCAATATTTGGCCCAGACTCTTCCCTGACAAACATTTA | + |
Preference number: 1 (lower is better) Translates to: KESAAWTIHCTLQLM*FSNIWPRLFPDKHL Trigger: TAAATGTTTGTCAGGGAAGAGTCTGGGCCAAATATTGGAAAAGCACATTAGCTGAAGAGTGCAATGTATTGTCCAGGCTGCCGATTCCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019749.4 |
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3UTR CCA 90 bp | TGGACAATACATTGCACTCTTCAGCTAATGTGCTTTTCCAATATTTaGCCCAGACTCTTCCCTGACAAACATTTACAAAAATGCTCAAAG | + |
Preference number: 1 (lower is better) Translates to: WTIHCTLQLMCFSNI*PRLFPDKHLQKCSK Trigger: CTTTGAGCATTTTTGTAAATGTTTGTCAGGGAAGAGTCTGGGCCAAATATTGGAAAAGCACATTAGCTGAAGAGTGCAATGTATTGTCCA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019749.4 |
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3UTR CAA 90 bp | AGCACAGGAGCAGTGCAAGAAGGATACAATGAATATGGCACCTACTaGACAAAGCAGAAACACAGAGCATCGAGACCTAGAAACCCCAGG | + |
Preference number: 2 (lower is better) Translates to: STGAVQEGYNEYGTY*TKQKHRASRPRNPR Trigger: CCTGGGGTTTCTAGGTCTCGATGCTCTGTGTTTCTGCTTTGTCAAGTAGGTGCCATATTCATTGTATCCTTCTTGCACTGCTCCTGTGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019749.4 |
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3UTR-3UTR TCA 90 bp | CATACAGCAAGCTGGCTTACAACACGGGAGCACAGGAGCAGTGCAAGAAGGATAAATATGGCACCTACTTaGCAAAGCAGAAACACAGAG | + |
Preference number: 2 (lower is better) Translates to: HTASWLTTREHRSSARRINMAPT*QSRNTE Trigger: CTCTGTGTTTCTGCTTTGTCAAGTAGGTGCCATATT...TATCCTTCTTGCACTGCTCCTGTGCTCCCGTGTTGTAAGCCAGCTTGCTGTATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019749.4 |
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3UTR-3UTR GCA 90 bp | CTAGCGCTGATCATTAGGAAGTTTATGTTGTTGAGGCAAACCACCAGCTCAGACGGACAGCTCAAGGACTaGTTCTATGCGATACTACAA | + |
Preference number: 2 (lower is better) Translates to: LALIIRKFMLLRQTTSSDGQLKD*FYAILQ Trigger: TTGTAGTATCGCATAGAAGCAGTCCTTGAGCTGTCC...GTCTGAGCTGGTGGTTTGCCTCAACAACATAAACTTCCTAATGATCAGCGCTAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019749.4 ENSMUST00000074721.6 |
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3UTR GCA 72 bp | ACAGCAGAGGGTGGACGTACCAACCGACATCTGAGATaGATACAGCAAGCTGGCTTACAACACGGGAGCACA | + |
Preference number: 3 (lower is better) Translates to: TAEGGRTNRHLR*IQQAGLQHGST Trigger: TGTGCTCCCGTGTTGTAAGCCAGCTTGCTGTATGCATCTCAGATGTCGGTTGGTACGTCCACCCTCTGCTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019749.4 |
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3UTR TCA 72 bp | GAAGAACAGCAGAGGGTGGACGTACCAACCGACATCTaGGATGCATACAGCAAGCTGGCTTACAACACGGGA | + |
Preference number: 3 (lower is better) Translates to: EEQQRVDVPTDI*DAYSKLAYNTG Trigger: TCCCGTGTTGTAAGCCAGCTTGCTGTATGCATCTCAGATGTCGGTTGGTACGTCCACCCTCTGCTGTTCTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019749.4 |
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3UTR TCA 72 bp | AGCGGCTGTTTACACTCAGGGCTCATTTCCAATCTGTaGGGCCACGGATTTCCTGAAGAACAGCAGAGGGTG | + |
Preference number: 3 (lower is better) Translates to: SGCLHSGLISNL*GHGFPEEQQRV Trigger: CACCCTCTGCTGTTCTTCAGGAAATCCGTGGCCTCACAGATTGGAAATGAGCCCTGAGTGTAAACAGCCGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019749.4 |
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3UTR CCA 72 bp | ACGTACCAACCGACATCTGAGATGCATACAGCAAGCTaGCTTACAACACGGGAGCACAGGAGCAGTGCAAGA | + |
Preference number: 3 (lower is better) Translates to: TYQPTSEMHTAS*LTTREHRSSAR Trigger: TCTTGCACTGCTCCTGTGCTCCCGTGTTGTAAGCCAGCTTGCTGTATGCATCTCAGATGTCGGTTGGTACGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019749.4 |
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3UTR CCA 72 bp | TGTGAGGCCACGGATTTCCTGAAGAACAGCAGAGGGTaGACGTACCAACCGACATCTGAGATGCATACAGCA | + |
Preference number: 3 (lower is better) Translates to: CEATDFLKNSRG*TYQPTSEMHTA Trigger: TGCTGTATGCATCTCAGATGTCGGTTGGTACGTCCACCCTCTGCTGTTCTTCAGGAAATCCGTGGCCTCACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019749.4 |
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3UTR TCA 72 bp | GGAGGACCGGTGGTGTCCACCAGTATATACTTATACTaGTCATCAGTCTTAATAGTCTGTGGTAGAAGTGTA | + |
Preference number: 3 (lower is better) Translates to: GGPVVSTSIYLY*SSVLIVCGRSV Trigger: TACACTTCTACCACAGACTATTAAGACTGATGATCAGTATAAGTATATACTGGTGGACACCACCGGTCCTCC 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019749.4 ENSMUST00000074721.6 |
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3UTR TCA 72 bp | CGCAGAAACCTCAAGAGCAGTGACATTAAGGTAGCTTaGAACACAGGTAAAGTCCGTTTCCAAAACACAAGA | + |
Preference number: 3 (lower is better) Translates to: RRNLKSSDIKVA*NTGKVRFQNTR Trigger: TCTTGTGTTTTGGAAACGGACTTTACCTGTGTTTCAAGCTACCTTAATGTCACTGCTCTTGAGGTTTCTGCG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019749.4 ENSMUST00000074721.6 |
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3UTR TCA 72 bp | TGTATGGACTACAGAAGCCCAACTAAATGTCGACTTTaGCATTATCCTCAAACTCCTGTCACTGGACAACAC | + |
Preference number: 3 (lower is better) Translates to: CMDYRSPTKCRL*HYPQTPVTGQH Trigger: GTGTTGTCCAGTGACAGGAGTTTGAGGATAATGTCAAAGTCGACATTTAGTTGGGCTTCTGTAGTCCATACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019749.4 |
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3UTR TCA 72 bp | CAGTGCAAGAAGGATACAATGAATATGGCACCTACTTaGCAAAGCAGAAACACAGAGCATCGAGACCTAGAA | + |
Preference number: 3 (lower is better) Translates to: QCKKDTMNMAPT*QSRNTEHRDLE Trigger: TTCTAGGTCTCGATGCTCTGTGTTTCTGCTTTGTCAAGTAGGTGCCATATTCATTGTATCCTTCTTGCACTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019749.4 |
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3UTR GCA 72 bp | CCCAAGTTTAAGGAATCGGCAGCCTGGACAATACATTaGACTCTTCAGCTAATGTGCTTTTCCAATATTTGG | + |
Preference number: 3 (lower is better) Translates to: PKFKESAAWTIH*TLQLMCFSNIW Trigger: CCAAATATTGGAAAAGCACATTAGCTGAAGAGTGCAATGTATTGTCCAGGCTGCCGATTCCTTAAACTTGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019749.4 |
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3UTR GCA 72 bp | GTATCAAATTACCCTTCTATAGGACAGCTCAAGGACTaGTTCTATGCGATACTACAAACTATTCTCTTTAAA | + |
Preference number: 3 (lower is better) Translates to: VSNYPSIGQLKD*FYAILQTILFK Trigger: TTTAAAGAGAATAGTTTGTAGTATCGCATAGAAGCAGTCCTTGAGCTGTCCTATAGAAGGGTAATTTGATAC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019749.4 ENSMUST00000074721.6 |
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CDS-3UTR TCA 90 bp | CAGGTAAAGTCCGTTTCCAAAACACAAGAGGGAGGACCGGTGGTGTCCACCAGTTTCGCGGGCTCCCCGTaGCAGGCAATCCCGCCGCAG | + |
Preference number: 4 (lower is better) Translates to: QVKSVSKTQEGGPVVSTSFAGSP*QAIPPQ Trigger: CTGCGGCGGGATTGCCTGTCACGGGGAGCCCGCGAA...ACTGGTGGACACCACCGGTCCTCCCTCTTGTGTTTTGGAAACGGACTTTACCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019749.4 ENSMUST00000074721.6 |
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CDS-3UTR GCA 90 bp | GAAACACAGGTAAAGTCCGTTTCCAAAACACAAGAGGGAGGACCGGTGGTGTCCAGCCGGCGGCGCTGTTaGCATAGAGCTGCAGGGCGG | + |
Preference number: 4 (lower is better) Translates to: ETQVKSVSKTQEGGPVVSSRRRC*HRAAGR Trigger: CCGCCCTGCAGCTCTATGGCAACAGCGCCGCCGGCT...GGACACCACCGGTCCTCCCTCTTGTGTTTTGGAAACGGACTTTACCTGTGTTTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019749.4 ENSMUST00000074721.6 |
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CDS-3UTR TCA 90 bp | AGGTCCGTATCAAATTACCCTTCTATAGGACAGCTCAAGGACTGCTTCTATGCGCGTAGTAAGTGGGATTaGTGGCCTCGCCCGCCGCGG | + |
Preference number: 4 (lower is better) Translates to: RSVSNYPSIGQLKDCFYARSKWD*WPRPPR Trigger: CCGCGGCGGGCGAGGCCATCAATCCCACTTACTACG...CGCATAGAAGCAGTCCTTGAGCTGTCCTATAGAAGGGTAATTTGATACGGACCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019749.4 ENSMUST00000074721.6 |
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CDS-3UTR TCA 90 bp | TTACCCTTCTATAGGACAGCTCAAGGACTGCTTCTATGCGATACTACAAACTATTTCGCGGGCTCCCCGTaGCAGGCAATCCCGCCGCAG | + |
Preference number: 4 (lower is better) Translates to: LPFYRTAQGLLLCDTTNYFAGSP*QAIPPQ Trigger: CTGCGGCGGGATTGCCTGTCACGGGGAGCCCGCGAA...ATAGTTTGTAGTATCGCATAGAAGCAGTCCTTGAGCTGTCCTATAGAAGGGTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019749.4 ENSMUST00000074721.6 |
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CDS-3UTR TCA 90 bp | CAGGTAAAGTCCGTTTCCAAAACACAAGAGGGAGGACCGGTGGTGTCCACCAGTGAAGGAGACGAGCTCTaGTTTAAGTGGTCTGGGTCC | + |
Preference number: 4 (lower is better) Translates to: QVKSVSKTQEGGPVVSTSEGDEL*FKWSGS Trigger: GGACCCAGACCACTTAAATCAGAGCTCGTCTCCTTC...ACTGGTGGACACCACCGGTCCTCCCTCTTGTGTTTTGGAAACGGACTTTACCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019749.4 ENSMUST00000074721.6 |
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CDS-3UTR CCA 90 bp | AAATTACCCTTCTATAGGACAGCTCAAGGACTGCTTCTATGCGATACTACAAACAGGGTGCGGAGGAGGTaGGGCGGCCTGGTAGGCAGC | + |
Preference number: 4 (lower is better) Translates to: KLPFYRTAQGLLLCDTTNRVRRR*GGLVGS Trigger: GCTGCCTACCAGGCCGCCCCACCTCCTCCGCACCCT...GTTTGTAGTATCGCATAGAAGCAGTCCTTGAGCTGTCCTATAGAAGGGTAATTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019749.4 ENSMUST00000074721.6 |
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CDS-3UTR GCA 90 bp | GAAACACAGGTAAAGTCCGTTTCCAAAACACAAGAGGGAGGACCGGTGGTGTCCGCCGCTGACCTCGGGTaGAAAATGACAGTCGTAGTA | + |
Preference number: 4 (lower is better) Translates to: ETQVKSVSKTQEGGPVVSAADLG*KMTVVV Trigger: TACTACGACTGTCATTTTGCACCCGAGGTCAGCGGC...GGACACCACCGGTCCTCCCTCTTGTGTTTTGGAAACGGACTTTACCTGTGTTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019749.4 ENSMUST00000074721.6 |
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CDS-3UTR CCA 90 bp | ATTAGGAAGTTTATGTTGTTGAGGCAAACCACCAGCTCAGACGTTAAAAATTACAGGGTGCGGAGGAGGTaGGGCGGCCTGGTAGGCAGC | + |
Preference number: 4 (lower is better) Translates to: IRKFMLLRQTTSSDVKNYRVRRR*GGLVGS Trigger: GCTGCCTACCAGGCCGCCCCACCTCCTCCGCACCCT...GTAATTTTTAACGTCTGAGCTGGTGGTTTGCCTCAACAACATAAACTTCCTAAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000019749.4 ENSMUST00000074721.6 |
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CDS-3UTR TCA 90 bp | AGGAAGTTTATGTTGTTGAGGCAAACCACCAGCTCAGACGTTAAAAATTACCATCGTAGTAAGTGGGATTaGTGGCCTCGCCCGCCGCGG | + |
Preference number: 4 (lower is better) Translates to: RKFMLLRQTTSSDVKNYHRSKWD*WPRPPR Trigger: CCGCGGCGGGCGAGGCCATCAATCCCACTTACTACG...ATGGTAATTTTTAACGTCTGAGCTGGTGGTTTGCCTCAACAACATAAACTTCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000019749.4 ENSMUST00000074721.6 |
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CDS-3UTR GCA 90 bp | AAGTTTATGTTGTTGAGGCAAACCACCAGCTCAGACGTTAAAAATTACCATTATAGCCGGCGGCGCTGTTaGCATAGAGCTGCAGGGCGG | + |
Preference number: 4 (lower is better) Translates to: KFMLLRQTTSSDVKNYHYSRRRC*HRAAGR Trigger: CCGCCCTGCAGCTCTATGGCAACAGCGCCGCCGGCT...ATAATGGTAATTTTTAACGTCTGAGCTGGTGGTTTGCCTCAACAACATAAACTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000019749.4 ENSMUST00000074721.6 |
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CDS-3UTR CCA 90 bp | CAAACTCCTGTCACTGGACAACACTCTCCCAAGTTTAAGGAATCGGCAGCCTGGCGCCAATATTACCACTaGACGATTTACAGTCAGGAT | + |
Preference number: 4 (lower is better) Translates to: QTPVTGQHSPKFKESAAWRQYYH*TIYSQD Trigger: ATCCTGACTGTAAATCGTCCAGTGGTAATATTGGCG...CCAGGCTGCCGATTCCTTAAACTTGGGAGAGTGTTGTCCAGTGACAGGAGTTTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019749.4 |
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CDS-3UTR CCA 90 bp | AGGAAGTTTATGTTGTTGAGGCAAACCACCAGCTCAGACGTTAAAAATTACCATCCGCCGCCTTGTACTTaGAGTACAGCGGGTTCACGA | + |
Preference number: 4 (lower is better) Translates to: RKFMLLRQTTSSDVKNYHPPPCT*STAGSR Trigger: TCGTGAACCCGCTGTACTCCAAGTACAAGGCGGCGG...ATGGTAATTTTTAACGTCTGAGCTGGTGGTTTGCCTCAACAACATAAACTTCCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000019749.4 ENSMUST00000074721.6 |
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CDS-3UTR CCA 90 bp | CACAAGGTCCGTATCAAATTACCCTTCTATAGGACAGCTCAAGGACTGCTTCTAACCAGGAGCTGCTTGTaGTCTCATCCAGGGAAACAT | + |
Preference number: 4 (lower is better) Translates to: HKVRIKLPFYRTAQGLLLTRSCL*SHPGKH Trigger: ATGTTTCCCTGGATGAGACCACAAGCAGCTCCTGGT...TAGAAGCAGTCCTTGAGCTGTCCTATAGAAGGGTAATTTGATACGGACCTTGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019749.4 |
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CDS-3UTR GCA 90 bp | GGTGGTGTCCACCAGTATATACTTATACTGATCATCAGTCTTAATAGTCTGTGGGCCGCTGACCTCGGGTaGAAAATGACAGTCGTAGTA | + |
Preference number: 4 (lower is better) Translates to: GGVHQYILILIISLNSLWAADLG*KMTVVV Trigger: TACTACGACTGTCATTTTGCACCCGAGGTCAGCGGC...CCACAGACTATTAAGACTGATGATCAGTATAAGTATATACTGGTGGACACCACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019749.4 ENSMUST00000074721.6 |
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CDS-3UTR GCA 90 bp | GGACAGCTCAAGGACTGCTTCTATGCGATACTACAAACTATTCTCTTTAAAAACACCAGCTCGGCCTCTTaGTGGGTCGTAAAAATCGGC | + |
Preference number: 4 (lower is better) Translates to: GQLKDCFYAILQTILFKNTSSAS*WVVKIG Trigger: GCCGATTTTTACGACCCAGCAAGAGGCCGAGCTGGT...GTTTTTAAAGAGAATAGTTTGTAGTATCGCATAGAAGCAGTCCTTGAGCTGTCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000019749.4 ENSMUST00000074721.6 |
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CDS-3UTR CCA 90 bp | GTGAGCCAGAAGACACCTGAACCATCGTTACAAAAGCAGAAAGAAAAATATAAACCGCCGCCTTGTACTTaGAGTACAGCGGGTTCACGA | + |
Preference number: 4 (lower is better) Translates to: VSQKTPEPSLQKQKEKYKPPPCT*STAGSR Trigger: TCGTGAACCCGCTGTACTCCAAGTACAAGGCGGCGG...TTTATATTTTTCTTTCTGCTTTTGTAACGATGGTTCAGGTGTCTTCTGGCTCAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019749.4 |
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CDS-3UTR CCA 90 bp | TTACCCTTCTATAGGACAGCTCAAGGACTGCTTCTATGCGATACTACAAACTATAGCTCGGCCTCTTGCTaGGTCGTAAAAATCGGCTGT | + |
Preference number: 4 (lower is better) Translates to: LPFYRTAQGLLLCDTTNYSSASC*VVKIGC Trigger: ACAGCCGATTTTTACGACCCAGCAAGAGGCCGAGCT...ATAGTTTGTAGTATCGCATAGAAGCAGTCCTTGAGCTGTCCTATAGAAGGGTAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000019749.4 ENSMUST00000074721.6 |
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3UTR CAA 72 bp | GCAGTGCAAGAAGGATACAATGAATATGGCACCTACTaGACAAAGCAGAAACACAGAGCATCGAGACCTAGA | + |
Preference number: 4 (lower is better) Translates to: AVQEGYNEYGTY*TKQKHRASRPR Trigger: TCTAGGTCTCGATGCTCTGTGTTTCTGCTTTGTCAAGTAGGTGCCATATTCATTGTATCCTTCTTGCACTGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019749.4 |
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CDS-3UTR CCA 90 bp | GGACAGCTCAAGGACTGCTTCTATGCGATACTACAAACTATTCTCTTTAAAAACCCGAGACTTCCTTTTTaGGGTCTCCATCCTTTGCCT | + |
Preference number: 4 (lower is better) Translates to: GQLKDCFYAILQTILFKNPRLPF*GLHPLP Trigger: AGGCAAAGGATGGAGACCCCAAAAAGGAAGTCTCGG...GTTTTTAAAGAGAATAGTTTGTAGTATCGCATAGAAGCAGTCCTTGAGCTGTCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000019749.4 ENSMUST00000074721.6 |
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CDS-3UTR CCA 90 bp | TTACCCTTCTATAGGACAGCTCAAGGACTGCTTCTATGCGATACTACAAACTATTCTACCAGGAGCTTGTaGTCTCATCCAGGGAAACAT | + |
Preference number: 4 (lower is better) Translates to: LPFYRTAQGLLLCDTTNYSTRSL*SHPGKH Trigger: ATGTTTCCCTGGATGAGACCACAAGCTCCTGGTAGA...ATAGTTTGTAGTATCGCATAGAAGCAGTCCTTGAGCTGTCCTATAGAAGGGTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074721.6 |
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CDS-3UTR CCA 90 bp | ATTAGGAAGTTTATGTTGTTGAGGCAAACCACCAGCTCAGACGTTAAAAATTACCCGAGACTTCCTTTTTaGGGTCTCCATCCTTTGCCT | + |
Preference number: 4 (lower is better) Translates to: IRKFMLLRQTTSSDVKNYPRLPF*GLHPLP Trigger: AGGCAAAGGATGGAGACCCCAAAAAGGAAGTCTCGG...GTAATTTTTAACGTCTGAGCTGGTGGTTTGCCTCAACAACATAAACTTCCTAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000019749.4 ENSMUST00000074721.6 |
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CDS-3UTR CCA 90 bp | TTACCCTTCTATAGGACAGCTCAAGGACTGCTTCTATGCGATACTACAAACTATCGCCAATATTACCACTaGACGATTTACAGTCAGGAT | + |
Preference number: 4 (lower is better) Translates to: LPFYRTAQGLLLCDTTNYRQYYH*TIYSQD Trigger: ATCCTGACTGTAAATCGTCCAGTGGTAATATTGGCG...ATAGTTTGTAGTATCGCATAGAAGCAGTCCTTGAGCTGTCCTATAGAAGGGTAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019749.4 ENSMUST00000074721.6 |
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3UTR CAA 72 bp | TTCAATCATCTAGCGCTGATCATTAGGAAGTTTATGTaGTTGAGGCAAACCACCAGCTCAGACGTTAAAAAT | + |
Preference number: 4 (lower is better) Translates to: FNHLALIIRKFM*LRQTTSSDVKN Trigger: ATTTTTAACGTCTGAGCTGGTGGTTTGCCTCAACAACATAAACTTCCTAATGATCAGCGCTAGATGATTGAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000019749.4 ENSMUST00000074721.6 |
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CDS GCA 90 bp | GCCATAGAGCTGCAGGGCGGCGGCGTGGCGGCCGCTGACCTCGGGTaGAAAATGACAGTCGTAGTAAGTGGGATTGATGGCCTCGCCCGC | + |
Preference number: 5 (lower is better) Translates to: AIELQGGGVAAADLG*KMTVVVSGIDGLAR Trigger: GCGGGCGAGGCCATCAATCCCACTTACTACGACTGTCATTTTGCACCCGAGGTCAGCGGCCGCCACGCCGCCGCCCTGCAGCTCTATGGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019749.4 ENSMUST00000074721.6 |
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CDS-3UTR CAA 90 bp | GTCCGTTTCCAAAACACAAGAGGGAGGACCGGTGGTGTCCACCAGTATATACTTGCCGCGGCCGCCGCCTaGTACTTGGAGTACAGCGGG | + |
Preference number: 5 (lower is better) Translates to: VRFQNTRGRTGGVHQYILAAAAA*YLEYSG Trigger: CCCGCTGTACTCCAAGTACAAGGCGGCGGCCGCGGC...AAGTATATACTGGTGGACACCACCGGTCCTCCCTCTTGTGTTTTGGAAACGGAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019749.4 ENSMUST00000074721.6 |
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CDS-3UTR CAA 90 bp | TCCGTTTCCAAAACACAAGAGGGAGGACCGGTGGTGTCCACCAGTATATACTTAGCCGCCGCCTTGTACTaGGAGTACAGCGGGTTCACG | + |
Preference number: 5 (lower is better) Translates to: SVSKTQEGGPVVSTSIYLAAALY*EYSGFT Trigger: CGTGAACCCGCTGTACTCCAAGTACAAGGCGGCGGC...TAAGTATATACTGGTGGACACCACCGGTCCTCCCTCTTGTGTTTTGGAAACGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019749.4 ENSMUST00000074721.6 |
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CDS-3UTR CAA 90 bp | AAATTACCCTTCTATAGGACAGCTCAAGGACTGCTTCTATGCGATACTACAAACGCCGCGGCCGCCGCCTaGTACTTGGAGTACAGCGGG | + |
Preference number: 5 (lower is better) Translates to: KLPFYRTAQGLLLCDTTNAAAAA*YLEYSG Trigger: CCCGCTGTACTCCAAGTACAAGGCGGCGGCCGCGGC...GTTTGTAGTATCGCATAGAAGCAGTCCTTGAGCTGTCCTATAGAAGGGTAATTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019749.4 ENSMUST00000074721.6 |
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CDS-3UTR CAA 90 bp | ATCTGTGAGGCCACGGATTTCCTGAAGAACAGCAGAGGGTGGACGTACCAACCGCATCCAGGGAAACATTaGAGAAGGAGACGAGCTCTG | + |
Preference number: 5 (lower is better) Translates to: ICEATDFLKNSRGWTYQPHPGKH*RRRRAL Trigger: CAGAGCTCGTCTCCTTCTCAAATGTTTCCCTGGATG...CGGTTGGTACGTCCACCCTCTGCTGTTCTTCAGGAAATCCGTGGCCTCACAGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019749.4 |
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CDS-3UTR CAA 90 bp | CAGGTAAAGTCCGTTTCCAAAACACAAGAGGGAGGACCGGTGGTGTCCACCAGTTTTACAGTCAGGATATaGTACCAGCTCGGCCTCTTG | + |
Preference number: 5 (lower is better) Translates to: QVKSVSKTQEGGPVVSTSFTVRI*YQLGLL Trigger: CAAGAGGCCGAGCTGGTACAATATCCTGACTGTAAA...ACTGGTGGACACCACCGGTCCTCCCTCTTGTGTTTTGGAAACGGACTTTACCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019749.4 ENSMUST00000074721.6 |
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CDS-3UTR CAA 90 bp | AAGTCCGTTTCCAAAACACAAGAGGGAGGACCGGTGGTGTCCACCAGTATATACGAAGCGACTGTAGGTTaGTCTTCCTCTCCGTCTACC | + |
Preference number: 5 (lower is better) Translates to: KSVSKTQEGGPVVSTSIYEATVG*SSSPST Trigger: GGTAGACGGAGAGGAAGACAAACCTACAGTCGCTTC...GTATATACTGGTGGACACCACCGGTCCTCCCTCTTGTGTTTTGGAAACGGACTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019749.4 ENSMUST00000074721.6 |
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CDS-3UTR CAA 90 bp | CTAGCGCTGATCATTAGGAAGTTTATGTTGTTGAGGCAAACCACCAGCTCAGACTCTACCAGGAGCTGCTaGTGGTCTCATCCAGGGAAA | + |
Preference number: 5 (lower is better) Translates to: LALIIRKFMLLRQTTSSDSTRSC*WSHPGK Trigger: TTTCCCTGGATGAGACCACAAGCAGCTCCTGGTAGA...GTCTGAGCTGGTGGTTTGCCTCAACAACATAAACTTCCTAATGATCAGCGCTAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019749.4 |
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CDS-3UTR CAA 90 bp | GTGAGCCAGAAGACACCTGAACCATCGTTACAAAAGCAGAAAGAAAAATATAAAGCCGCCGCCTTGTACTaGGAGTACAGCGGGTTCACG | + |
Preference number: 5 (lower is better) Translates to: VSQKTPEPSLQKQKEKYKAAALY*EYSGFT Trigger: CGTGAACCCGCTGTACTCCAAGTACAAGGCGGCGGC...TTTATATTTTTCTTTCTGCTTTTGTAACGATGGTTCAGGTGTCTTCTGGCTCAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019749.4 |
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CDS-3UTR CAA 90 bp | AGGTCCGTATCAAATTACCCTTCTATAGGACAGCTCAAGGACTGCTTCTATGCGCATCCAGGGAAACATTaGAGAAGGAGACGAGCTCTG | + |
Preference number: 5 (lower is better) Translates to: RSVSNYPSIGQLKDCFYAHPGKH*RRRRAL Trigger: CAGAGCTCGTCTCCTTCTCAAATGTTTCCCTGGATG...CGCATAGAAGCAGTCCTTGAGCTGTCCTATAGAAGGGTAATTTGATACGGACCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019749.4 ENSMUST00000074721.6 |
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CDS-3UTR CAA 90 bp | GTGAGCCAGAAGACACCTGAACCATCGTTACAAAAGCAGAAAGAAAAATATAAATACCAGCTCGGCCTCTaGCTGGGTCGTAAAAATCGG | + |
Preference number: 5 (lower is better) Translates to: VSQKTPEPSLQKQKEKYKYQLGL*LGRKNR Trigger: CCGATTTTTACGACCCAGCAAGAGGCCGAGCTGGTA...TTTATATTTTTCTTTCTGCTTTTGTAACGATGGTTCAGGTGTCTTCTGGCTCAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000019749.4 |
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CDS-3UTR CAA 90 bp | AAAAATATAGCCACAAGGTCCGTATCAAATTACCCTTCTATAGGACAGCTCAAGGAAGCGACTGTAGGTTaGTCTTCCTCTCCGTCTACC | + |
Preference number: 5 (lower is better) Translates to: KNIATRSVSNYPSIGQLKEATVG*SSSPST Trigger: GGTAGACGGAGAGGAAGACAAACCTACAGTCGCTTC...CTTGAGCTGTCCTATAGAAGGGTAATTTGATACGGACCTTGTGGCTATATTTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000019749.4 ENSMUST00000074721.6 |
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CDS-3UTR CAA 90 bp | AAGTTTATGTTGTTGAGGCAAACCACCAGCTCAGACGTTAAAAATTACCATTATCCGTCTACCAGGAGCTaGTGGTCTCATCCAGGGAAA | + |
Preference number: 5 (lower is better) Translates to: KFMLLRQTTSSDVKNYHYPSTRS*WSHPGK Trigger: TTTCCCTGGATGAGACCACAAGCTCCTGGTAGACGG...ATAATGGTAATTTTTAACGTCTGAGCTGGTGGTTTGCCTCAACAACATAAACTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074721.6 |
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CDS-3UTR CAA 90 bp | AGGAAGTTTATGTTGTTGAGGCAAACCACCAGCTCAGACGTTAAAAATTACCATTTTACAGTCAGGATATaGTACCAGCTCGGCCTCTTG | + |
Preference number: 5 (lower is better) Translates to: RKFMLLRQTTSSDVKNYHFTVRI*YQLGLL Trigger: CAAGAGGCCGAGCTGGTACAATATCCTGACTGTAAA...ATGGTAATTTTTAACGTCTGAGCTGGTGGTTTGCCTCAACAACATAAACTTCCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000019749.4 ENSMUST00000074721.6 |
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CDS-3UTR CAA 90 bp | AAATATAGCCACAAGGTCCGTATCAAATTACCCTTCTATAGGACAGCTCAAGGAGCAGGAAACTTGTCTTaGTTGTTCTCCTTTTTCCAT | + |
Preference number: 5 (lower is better) Translates to: KYSHKVRIKLPFYRTAQGAGNLS*LFSFFH Trigger: ATGGAAAAAGGAGAACAACAAAGACAAGTTTCCTGC...TCCTTGAGCTGTCCTATAGAAGGGTAATTTGATACGGACCTTGTGGCTATATTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000019749.4 ENSMUST00000074721.6 |
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CDS-3UTR CAA 90 bp | AATTACCCTTCTATAGGACAGCTCAAGGACTGCTTCTATGCGATACTACAAACTGCAGGAAACTTGTCTTaGTTGTTCTCCTTTTTCCAT | + |
Preference number: 5 (lower is better) Translates to: NYPSIGQLKDCFYAILQTAGNLS*LFSFFH Trigger: ATGGAAAAAGGAGAACAACAAAGACAAGTTTCCTGC...AGTTTGTAGTATCGCATAGAAGCAGTCCTTGAGCTGTCCTATAGAAGGGTAATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000019749.4 ENSMUST00000074721.6 |
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CDS GCA 72 bp | GGTGCGGGTGCGCGTGCGGGAAGCCGGCGGCGCTGTTaGCATAGAGCTGCAGGGCGGCGGCGTGGCGGCCGC | + |
Preference number: 6 (lower is better) Translates to: GAGARAGSRRRC*HRAAGRRRGGR Trigger: GCGGCCGCCACGCCGCCGCCCTGCAGCTCTATGGCAACAGCGCCGCCGGCTTCCCGCACGCGCACCCGCACC 79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019749.4 ENSMUST00000074721.6 |
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CDS GCA 72 bp | GAGGAGGTGGGGCGGCCTGGTAGGCAGCGGTCGGGCTaGCCGCGCCGGCGTGGAAGTAGTCCTGGCCGGGCC | + |
Preference number: 6 (lower is better) Translates to: EEVGRPGRQRSG*PRRRGSSPGRA Trigger: GGCCCGGCCAGGACTACTTCCACGCCGGCGCGGGCAGCCCGACCGCTGCCTACCAGGCCGCCCCACCTCCTC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019749.4 ENSMUST00000074721.6 |
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CDS CAA 72 bp | GCCGCCGCAGCCGCCGCCGCCGCCGCGGCCGCCGCCTaGTACTTGGAGTACAGCGGGTTCACGAAGTACGAG | + |
Preference number: 6 (lower is better) Translates to: AAAAAAAAAAAA*YLEYSGFTKYE Trigger: CTCGTACTTCGTGAACCCGCTGTACTCCAAGTACAAGGCGGCGGCCGCGGCGGCGGCGGCGGCTGCGGCGGC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019749.4 ENSMUST00000074721.6 |
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CDS GCA 72 bp | CTGCAGGGCGGCGGCGTGGCGGCCGCTGACCTCGGGTaGAAAATGACAGTCGTAGTAAGTGGGATTGATGGC | + |
Preference number: 6 (lower is better) Translates to: LQGGGVAAADLG*KMTVVVSGIDG Trigger: GCCATCAATCCCACTTACTACGACTGTCATTTTGCACCCGAGGTCAGCGGCCGCCACGCCGCCGCCCTGCAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019749.4 ENSMUST00000074721.6 |
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CDS CCA 72 bp | TTACAGTCAGGATATTGTACCAGCTCGGCCTCTTGCTaGGTCGTAAAAATCGGCTGTCTCTGTAAGTTATCG | + |
Preference number: 6 (lower is better) Translates to: LQSGYCTSSASC*VVKIGCLCKLS Trigger: CGATAACTTACAGAGACAGCCGATTTTTACGACCCAGCAAGAGGCCGAGCTGGTACAATATCCTGACTGTAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000019749.4 ENSMUST00000074721.6 |