Pregenerated sensors for HOXD4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000101174Ensembl transcript IDs: ENSMUST00000047904.4, ENSMUST00000111980.4
Found 57 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CAGGAGTTTAATGACTCGCCAAGGGTTTATGTTCTCAGTAGCTCCTaGCATATGATAATCTACTTAAAGAAGCCCGCCCACCCTCCCACC | + |
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Preference number: 1 (lower is better) Translates to: QEFNDSPRVYVLSSS*HMIIYLKKPAHPPT Trigger: GGTGGGAGGGTGGGCGGGCTTCTTTAAGTAGATTATCATATGGCAGGAGCTACTGAGAACATAAACCCTTGGCGAGTCATTAAACTCCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| 3UTR GCA 90 bp | GAGACCATCCCGGTTCCCACTGGGGTAAAGCCTCCAACCTTCATTTaGAAATTCAATCCACCAGCAGAGATTTTCAGGAGTTTAATGACT | + |
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Preference number: 1 (lower is better) Translates to: ETIPVPTGVKPPTFI*KFNPPAEIFRSLMT Trigger: AGTCATTAAACTCCTGAAAATCTCTGCTGGTGGATTGAATTTGCAAATGAAGGTTGGAGGCTTTACCCCAGTGGGAACCGGGATGGTCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| 3UTR-3UTR TCA 90 bp | CTCGGGCAGGAAGGTAACCTAGTCCGAGGGCGGCCTGCAGGTCCCAGGTCCACCTACCTTAGAGCCCAGTaGGGTGACAGCAGGCCCCGC | + |
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Preference number: 2 (lower is better) Translates to: LGQEGNLVRGRPAGPRSTYLRAQ*GDSRPR Trigger: GCGGGGCCTGCTGTCACCTCACTGGGCTCTAAGGTA...GGTGGACCTGGGACCTGCAGGCCGCCCTCGGACTAGGTTACCTTCCTGCCCGAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| 3UTR-3UTR GCA 90 bp | AAAGCCTCCAACCTTCATTTGCAAATTCAATCCACCAGCAGAGATTTTCAGGAGACAGCAGGCCCCGCCTaGACCCGCAGCTTCGCCTCA | + |
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Preference number: 2 (lower is better) Translates to: KASNLHLQIQSTSRDFQETAGPA*TRSFAS Trigger: TGAGGCGAAGCTGCGGGTGCAGGCGGGGCCTGCTGT...CTCCTGAAAATCTCTGCTGGTGGATTGAATTTGCAAATGAAGGTTGGAGGCTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| 3UTR-3UTR GCA 90 bp | CAATCCACCAGCAGAGATTTTCAGGAGTTTAATGACTCGCCAAGGGTTTATGTTACAGCAGGCCCCGCCTaGACCCGCAGCTTCGCCTCA | + |
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Preference number: 2 (lower is better) Translates to: QSTSRDFQEFNDSPRVYVTAGPA*TRSFAS Trigger: TGAGGCGAAGCTGCGGGTGCAGGCGGGGCCTGCTGT...AACATAAACCCTTGGCGAGTCATTAAACTCCTGAAAATCTCTGCTGGTGGATTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| 3UTR-3UTR TCA 90 bp | AAGCCTCCAACCTTCATTTGCAAATTCAATCCACCAGCAGAGATTTTCAGGAGTTACCTTAGAGCCCAGTaGGGTGACAGCAGGCCCCGC | + |
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Preference number: 2 (lower is better) Translates to: KPPTFICKFNPPAEIFRSYLRAQ*GDSRPR Trigger: GCGGGGCCTGCTGTCACCTCACTGGGCTCTAAGGTA...ACTCCTGAAAATCTCTGCTGGTGGATTGAATTTGCAAATGAAGGTTGGAGGCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| 3UTR-3UTR GCA 90 bp | CCCACAGTTACTAAGCCACACAGCTCCCTGAAGGGGGTGGTGTGGAGGAGACCAGTTCTCAGTAGCTCCTaGCATATGATAATCTACTTA | + |
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Preference number: 2 (lower is better) Translates to: PTVTKPHSSLKGVVWRRPVLSSS*HMIIYL Trigger: TAAGTAGATTATCATATGGCAGGAGCTACTGAGAAC...TGGTCTCCTCCACACCACCCCCTTCAGGGAGCTGTGTGGCTTAGTAACTGTGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| 3UTR CAA 90 bp | GGAGACCATCCCGGTTCCCACTGGGGTAAAGCCTCCAACCTTCATTaGCAAATTCAATCCACCAGCAGAGATTTTCAGGAGTTTAATGAC | + |
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Preference number: 2 (lower is better) Translates to: GDHPGSHWGKASNLH*QIQSTSRDFQEFND Trigger: GTCATTAAACTCCTGAAAATCTCTGCTGGTGGATTGAATTTGCAAATGAAGGTTGGAGGCTTTACCCCAGTGGGAACCGGGATGGTCTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| 3UTR-3UTR GCA 90 bp | TGCAAATTCAATCCACCAGCAGAGATTTTCAGGAGTTTAATGACTCGCCAAGGGGTTCTCAGTAGCTCCTaGCATATGATAATCTACTTA | + |
|
Preference number: 2 (lower is better) Translates to: CKFNPPAEIFRSLMTRQGVLSSS*HMIIYL Trigger: TAAGTAGATTATCATATGGCAGGAGCTACTGAGAAC...CCCTTGGCGAGTCATTAAACTCCTGAAAATCTCTGCTGGTGGATTGAATTTGCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| 3UTR CCA 72 bp | GCAGGCCCCGCCTGCACCCGCAGCTTCGCCTCAACCTaGAGTGCAAGAAGGGATAGGCCCAGGGTCCCCACT | + |
|
Preference number: 3 (lower is better) Translates to: AGPACTRSFAST*SARRDRPRVPT Trigger: AGTGGGGACCCTGGGCCTATCCCTTCTTGCACTCCAGGTTGAGGCGAAGCTGCGGGTGCAGGCGGGGCCTGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| 3UTR CCA 72 bp | AGGGGGTGGTGTGGAGGAGACCATCCCGGTTCCCACTaGGGTAAAGCCTCCAACCTTCATTTGCAAATTCAA | + |
|
Preference number: 3 (lower is better) Translates to: RGWCGGDHPGSH*GKASNLHLQIQ Trigger: TTGAATTTGCAAATGAAGGTTGGAGGCTTTACCCCAGTGGGAACCGGGATGGTCTCCTCCACACCACCCCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| 3UTR GCA 72 bp | CCGGTTCCCACTGGGGTAAAGCCTCCAACCTTCATTTaGAAATTCAATCCACCAGCAGAGATTTTCAGGAGT | + |
|
Preference number: 3 (lower is better) Translates to: PVPTGVKPPTFI*KFNPPAEIFRS Trigger: ACTCCTGAAAATCTCTGCTGGTGGATTGAATTTGCAAATGAAGGTTGGAGGCTTTACCCCAGTGGGAACCGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS-3UTR CCA 90 bp | AGCAGGCCCCGCCTGCACCCGCAGCTTCGCCTCAACCTGGAGTGCAAGAAGGGACCGTCCGGGAGCGCTTaGGCTCCCCGCCGGTGTAGT | + |
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Preference number: 4 (lower is better) Translates to: SRPRLHPQLRLNLECKKGPSGSA*APRRCS Trigger: ACTACACCGGCGGGGAGCCCAAGCGCTCCCGGACGG...TCCCTTCTTGCACTCCAGGTTGAGGCGAAGCTGCGGGTGCAGGCGGGGCCTGCT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS-3UTR CCA 90 bp | GTTACTAAGCCACACAGCTCCCTGAAGGGGGTGGTGTGGAGGAGACCATCCCGGGCTGCTTGGGGCCGGTaGGCTGGCTGCAGGCCCGAG | + |
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Preference number: 4 (lower is better) Translates to: VTKPHSSLKGVVWRRPSRAAWGR*AGCRPE Trigger: CTCGGGCCTGCAGCCAGCCCACCGGCCCCAAGCAGC...CCGGGATGGTCTCCTCCACACCACCCCCTTCAGGGAGCTGTGTGGCTTAGTAAC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS-3UTR GCA 90 bp | AGCAGGCCCCGCCTGCACCCGCAGCTTCGCCTCAACCTGGAGTGCAAGAAGGGAGAAGTCGGCGCCCTGTaGACCGCTGCCGTAGTAGTC | + |
|
Preference number: 4 (lower is better) Translates to: SRPRLHPQLRLNLECKKGEVGAL*TAAVVV Trigger: GACTACTACGGCAGCGGTGCACAGGGCGCCGACTTC...TCCCTTCTTGCACTCCAGGTTGAGGCGAAGCTGCGGGTGCAGGCGGGGCCTGCT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS-3UTR TCA 90 bp | CCCGCCTGCACCCGCAGCTTCGCCTCAACCTGGAGTGCAAGAAGGGATAGGCCCGACAGACACAGGGTGTaGGCGATTTCAATCCGACGG | + |
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Preference number: 4 (lower is better) Translates to: PACTRSFASTWSARRDRPDRHRV*AISIRR Trigger: CCGTCGGATTGAAATCGCTCACACCCTGTGTCTGTC...GGGCCTATCCCTTCTTGCACTCCAGGTTGAGGCGAAGCTGCGGGTGCAGGCGGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS-3UTR CCA 90 bp | CGCAGCTTCGCCTCAACCTGGAGTGCAAGAAGGGATAGGCCCAGGGTCCCCACTATTGGCTGCAAATGCTaGCCCGGGGCAGCTGAAGAG | + |
|
Preference number: 4 (lower is better) Translates to: RSFASTWSARRDRPRVPTIGCKC*PGAAEE Trigger: CTCTTCAGCTGCCCCGGGCCAGCATTTGCAGCCAAT...AGTGGGGACCCTGGGCCTATCCCTTCTTGCACTCCAGGTTGAGGCGAAGCTGCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS-3UTR CCA 90 bp | CTCAGTAGCTCCTGCCATATGATAATCTACTTAAAGAAGCCCGCCCACCCTCCCGCCGAAGTCGGGCCGTaGGTAGAGCCCCGAGGGCTG | + |
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Preference number: 4 (lower is better) Translates to: LSSSCHMIIYLKKPAHPPAEVGP*VEPRGL Trigger: CAGCCCTCGGGGCTCTACCCACGGCCCGACTTCGGC...GGGAGGGTGGGCGGGCTTCTTTAAGTAGATTATCATATGGCAGGAGCTACTGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS-3UTR TCA 90 bp | GTTACTAAGCCACACAGCTCCCTGAAGGGGGTGGTGTGGAGGAGACCATCCCGGGACAGACACAGGGTGTaGGCGATTTCAATCCGACGG | + |
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Preference number: 4 (lower is better) Translates to: VTKPHSSLKGVVWRRPSRDRHRV*AISIRR Trigger: CCGTCGGATTGAAATCGCTCACACCCTGTGTCTGTC...CCGGGATGGTCTCCTCCACACCACCCCCTTCAGGGAGCTGTGTGGCTTAGTAAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS-3UTR CCA 90 bp | CCCACCCTTCCCCACTTTAGGGAGGGGGCTGCCCTCGGGCAGGAAGGTAACCTAAAGAAGACCTGCCCTTaGTGTTGGGCAGTTTGTGGT | + |
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Preference number: 4 (lower is better) Translates to: PTLPHFREGAALGQEGNLKKTCP*CWAVCG Trigger: ACCACAAACTGCCCAACACCAAGGGCAGGTCTTCTT...TAGGTTACCTTCCTGCCCGAGGGCAGCCCCCTCCCTAAAGTGGGGAAGGGTGGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS-3UTR CCA 90 bp | CCCACAGTTACTAAGCCACACAGCTCCCTGAAGGGGGTGGTGTGGAGGAGACCAGTCGTCAGGTCCGTATaGTGGTCCTTGGCCATTGGC | + |
|
Preference number: 4 (lower is better) Translates to: PTVTKPHSSLKGVVWRRPVVRSV*WSLAIG Trigger: GCCAATGGCCAAGGACCACCATACGGACCTGACGAC...TGGTCTCCTCCACACCACCCCCTTCAGGGAGCTGTGTGGCTTAGTAACTGTGGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS-3UTR GCA 90 bp | GTTACTAAGCCACACAGCTCCCTGAAGGGGGTGGTGTGGAGGAGACCATCCCGGATGAGGAAGAAGACCTaGCCTTGGTGTTGGGCAGTT | + |
|
Preference number: 4 (lower is better) Translates to: VTKPHSSLKGVVWRRPSRMRKKT*PWCWAV Trigger: AACTGCCCAACACCAAGGGCAGGTCTTCTTCCTCAT...CCGGGATGGTCTCCTCCACACCACCCCCTTCAGGGAGCTGTGTGGCTTAGTAAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS-3UTR CCA 90 bp | GAGATTTTCAGGAGTTTAATGACTCGCCAAGGGTTTATGTTCTCAGTAGCTCCTGCTGCTTGGGGCCGGTaGGCTGGCTGCAGGCCCGAG | + |
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Preference number: 4 (lower is better) Translates to: EIFRSLMTRQGFMFSVAPAAWGR*AGCRPE Trigger: CTCGGGCCTGCAGCCAGCCCACCGGCCCCAAGCAGC...AGGAGCTACTGAGAACATAAACCCTTGGCGAGTCATTAAACTCCTGAAAATCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS-3UTR CCA 90 bp | TGGGGTAAAGCCTCCAACCTTCATTTGCAAATTCAATCCACCAGCAGAGATTTTCCGTCCGGGAGCGCTTaGGCTCCCCGCCGGTGTAGT | + |
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Preference number: 4 (lower is better) Translates to: WGKASNLHLQIQSTSRDFPSGSA*APRRCS Trigger: ACTACACCGGCGGGGAGCCCAAGCGCTCCCGGACGG...AAAATCTCTGCTGGTGGATTGAATTTGCAAATGAAGGTTGGAGGCTTTACCCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS-3UTR CCA 90 bp | CCCGGTTCCCACTGGGGTAAAGCCTCCAACCTTCATTTGCAAATTCAATCCACCATTGGCTGCAAATGCTaGCCCGGGGCAGCTGAAGAG | + |
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Preference number: 4 (lower is better) Translates to: PGSHWGKASNLHLQIQSTIGCKC*PGAAEE Trigger: CTCTTCAGCTGCCCCGGGCCAGCATTTGCAGCCAAT...GGTGGATTGAATTTGCAAATGAAGGTTGGAGGCTTTACCCCAGTGGGAACCGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS-3UTR CCA 90 bp | TTTAATGACTCGCCAAGGGTTTATGTTCTCAGTAGCTCCTGCCATATGATAATCGCCGAAGTCGGGCCGTaGGTAGAGCCCCGAGGGCTG | + |
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Preference number: 4 (lower is better) Translates to: FNDSPRVYVLSSSCHMIIAEVGP*VEPRGL Trigger: CAGCCCTCGGGGCTCTACCCACGGCCCGACTTCGGC...GATTATCATATGGCAGGAGCTACTGAGAACATAAACCCTTGGCGAGTCATTAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS-3UTR GCA 90 bp | CAATCCACCAGCAGAGATTTTCAGGAGTTTAATGACTCGCCAAGGGTTTATGTTCGCCCTGTGCACCGCTaGCGTAGTAGTCGGCTCCCT | + |
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Preference number: 4 (lower is better) Translates to: QSTSRDFQEFNDSPRVYVRPVHR*RSSRLP Trigger: AGGGAGCCGACTACTACGGCAGCGGTGCACAGGGCG...AACATAAACCCTTGGCGAGTCATTAAACTCCTGAAAATCTCTGCTGGTGGATTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS-3UTR GCA 90 bp | GGTAAAGCCTCCAACCTTCATTTGCAAATTCAATCCACCAGCAGAGATTTTCAGCGCCCTGTGCACCGCTaGCGTAGTAGTCGGCTCCCT | + |
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Preference number: 4 (lower is better) Translates to: GKASNLHLQIQSTSRDFQRPVHR*RSSRLP Trigger: AGGGAGCCGACTACTACGGCAGCGGTGCACAGGGCG...CTGAAAATCTCTGCTGGTGGATTGAATTTGCAAATGAAGGTTGGAGGCTTTACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS-3UTR GCA 90 bp | AGGGTTTATGTTCTCAGTAGCTCCTGCCATATGATAATCTACTTAAAGAAGCCCCCGCCTCCGAAGGGTTaGTCGCCGAAGTCGGGCCGT | + |
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Preference number: 4 (lower is better) Translates to: RVYVLSSSCHMIIYLKKPPPPKG*SPKSGR Trigger: ACGGCCCGACTTCGGCGAGCAACCCTTCGGAGGCGG...GGGCTTCTTTAAGTAGATTATCATATGGCAGGAGCTACTGAGAACATAAACCCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS-3UTR GCA 90 bp | AAAGCCTCCAACCTTCATTTGCAAATTCAATCCACCAGCAGAGATTTTCAGGAGGAAGTCGGCGCCCTGTaGACCGCTGCCGTAGTAGTC | + |
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Preference number: 4 (lower is better) Translates to: KASNLHLQIQSTSRDFQEEVGAL*TAAVVV Trigger: GACTACTACGGCAGCGGTGCACAGGGCGCCGACTTC...CTCCTGAAAATCTCTGCTGGTGGATTGAATTTGCAAATGAAGGTTGGAGGCTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS-3UTR GCA 90 bp | GGTAAAGCCTCCAACCTTCATTTGCAAATTCAATCCACCAGCAGAGATTTTCAGTCCTTGGCCATTGGCTaGAAATGCTGGCCCGGGGCA | + |
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Preference number: 4 (lower is better) Translates to: GKASNLHLQIQSTSRDFQSLAIG*KCWPGA Trigger: TGCCCCGGGCCAGCATTTGCAGCCAATGGCCAAGGA...CTGAAAATCTCTGCTGGTGGATTGAATTTGCAAATGAAGGTTGGAGGCTTTACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS-3UTR GCA 90 bp | TTGCAAATTCAATCCACCAGCAGAGATTTTCAGGAGTTTAATGACTCGCCAAGGTCCTTGGCCATTGGCTaGAAATGCTGGCCCGGGGCA | + |
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Preference number: 4 (lower is better) Translates to: LQIQSTSRDFQEFNDSPRSLAIG*KCWPGA Trigger: TGCCCCGGGCCAGCATTTGCAGCCAATGGCCAAGGA...CCTTGGCGAGTCATTAAACTCCTGAAAATCTCTGCTGGTGGATTGAATTTGCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS-3UTR CCA 90 bp | GGTAAAGCCTCCAACCTTCATTTGCAAATTCAATCCACCAGCAGAGATTTTCAGCTAGGACTTGCTGTCTaGTGTAGGCCGTCCGGGAGC | + |
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Preference number: 4 (lower is better) Translates to: GKASNLHLQIQSTSRDFQLGLAV*CRPSGS Trigger: GCTCCCGGACGGCCTACACCAGACAGCAAGTCCTAG...CTGAAAATCTCTGCTGGTGGATTGAATTTGCAAATGAAGGTTGGAGGCTTTACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS-3UTR CCA 90 bp | AAAGCCTCCAACCTTCATTTGCAAATTCAATCCACCAGCAGAGATTTTCAGGAGGTGGTCCTTGGCCATTaGCTGCAAATGCTGGCCCGG | + |
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Preference number: 4 (lower is better) Translates to: KASNLHLQIQSTSRDFQEVVLGH*LQMLAR Trigger: CCGGGCCAGCATTTGCAGCCAATGGCCAAGGACCAC...CTCCTGAAAATCTCTGCTGGTGGATTGAATTTGCAAATGAAGGTTGGAGGCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS-3UTR CCA 90 bp | GGTAAAGCCTCCAACCTTCATTTGCAAATTCAATCCACCAGCAGAGATTTTCAGGTGGTCCTTGGCCATTaGCTGCAAATGCTGGCCCGG | + |
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Preference number: 4 (lower is better) Translates to: GKASNLHLQIQSTSRDFQVVLGH*LQMLAR Trigger: CCGGGCCAGCATTTGCAGCCAATGGCCAAGGACCAC...CTGAAAATCTCTGCTGGTGGATTGAATTTGCAAATGAAGGTTGGAGGCTTTACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS-3UTR CCA 90 bp | AAAGCCTCCAACCTTCATTTGCAAATTCAATCCACCAGCAGAGATTTTCAGGAGCCCCGCCGGTGTAGTTaGGGTTCACCGAATTCACGT | + |
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Preference number: 4 (lower is better) Translates to: KASNLHLQIQSTSRDFQEPRRCS*GSPNSR Trigger: ACGTGAATTCGGTGAACCCCAACTACACCGGCGGGG...CTCCTGAAAATCTCTGCTGGTGGATTGAATTTGCAAATGAAGGTTGGAGGCTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS-3UTR CCA 90 bp | CAATCCACCAGCAGAGATTTTCAGGAGTTTAATGACTCGCCAAGGGTTTATGTTGTCAGGTCCGTATGGTaGTCCTTGGCCATTGGCTGC | + |
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Preference number: 4 (lower is better) Translates to: QSTSRDFQEFNDSPRVYVVRSVW*SLAIGC Trigger: GCAGCCAATGGCCAAGGACCACCATACGGACCTGAC...AACATAAACCCTTGGCGAGTCATTAAACTCCTGAAAATCTCTGCTGGTGGATTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS-3UTR CCA 90 bp | AAGCCTCCAACCTTCATTTGCAAATTCAATCCACCAGCAGAGATTTTCAGGAGTGTCGTCAGGTCCGTATaGTGGTCCTTGGCCATTGGC | + |
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Preference number: 4 (lower is better) Translates to: KPPTFICKFNPPAEIFRSVVRSV*WSLAIG Trigger: GCCAATGGCCAAGGACCACCATACGGACCTGACGAC...ACTCCTGAAAATCTCTGCTGGTGGATTGAATTTGCAAATGAAGGTTGGAGGCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS-3UTR CCA 90 bp | TTTAATGACTCGCCAAGGGTTTATGTTCTCAGTAGCTCCTGCCATATGATAATCGTCAGGTCCGTATGGTaGTCCTTGGCCATTGGCTGC | + |
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Preference number: 4 (lower is better) Translates to: FNDSPRVYVLSSSCHMIIVRSVW*SLAIGC Trigger: GCAGCCAATGGCCAAGGACCACCATACGGACCTGAC...GATTATCATATGGCAGGAGCTACTGAGAACATAAACCCTTGGCGAGTCATTAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS-3UTR TCA 90 bp | TTGCAAATTCAATCCACCAGCAGAGATTTTCAGGAGTTTAATGACTCGCCAAGGAGAGGAGCAGGAAGATaGGGAAGAAGACCTGCCCTT | + |
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Preference number: 4 (lower is better) Translates to: LQIQSTSRDFQEFNDSPRRGAGR*GRRPAL Trigger: AAGGGCAGGTCTTCTTCCTCATCTTCCTGCTCCTCT...CCTTGGCGAGTCATTAAACTCCTGAAAATCTCTGCTGGTGGATTGAATTTGCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS-3UTR GCA 90 bp | TGCAAATTCAATCCACCAGCAGAGATTTTCAGGAGTTTAATGACTCGCCAAGGGTTCACCGAATTCACGTaGACCTTCTTCATCCAAGGG | + |
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Preference number: 4 (lower is better) Translates to: CKFNPPAEIFRSLMTRQGFTEFT*TFFIQG Trigger: CCCTTGGATGAAGAAGGTGCACGTGAATTCGGTGAA...CCCTTGGCGAGTCATTAAACTCCTGAAAATCTCTGCTGGTGGATTGAATTTGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS-3UTR GCA 90 bp | AAGCCTCCAACCTTCATTTGCAAATTCAATCCACCAGCAGAGATTTTCAGGAGTATGAGGAAGAAGACCTaGCCTTGGTGTTGGGCAGTT | + |
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Preference number: 4 (lower is better) Translates to: KPPTFICKFNPPAEIFRSMRKKT*PWCWAV Trigger: AACTGCCCAACACCAAGGGCAGGTCTTCTTCCTCAT...ACTCCTGAAAATCTCTGCTGGTGGATTGAATTTGCAAATGAAGGTTGGAGGCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS-3UTR CCA 90 bp | GAGATTTTCAGGAGTTTAATGACTCGCCAAGGGTTTATGTTCTCAGTAGCTCCTAAGAAGACCTGCCCTTaGTGTTGGGCAGTTTGTGGT | + |
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Preference number: 4 (lower is better) Translates to: EIFRSLMTRQGFMFSVAPKKTCP*CWAVCG Trigger: ACCACAAACTGCCCAACACCAAGGGCAGGTCTTCTT...AGGAGCTACTGAGAACATAAACCCTTGGCGAGTCATTAAACTCCTGAAAATCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS-3UTR GCA 90 bp | AGGGTTTATGTTCTCAGTAGCTCCTGCCATATGATAATCTACTTAAAGAAGCCCTTCACCGAATTCACGTaGACCTTCTTCATCCAAGGG | + |
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Preference number: 4 (lower is better) Translates to: RVYVLSSSCHMIIYLKKPFTEFT*TFFIQG Trigger: CCCTTGGATGAAGAAGGTGCACGTGAATTCGGTGAA...GGGCTTCTTTAAGTAGATTATCATATGGCAGGAGCTACTGAGAACATAAACCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS-3UTR CAA 90 bp | CTCGGGCAGGAAGGTAACCTAGTCCGAGGGCGGCCTGCAGGTCCCAGGTCCACCGCCGCCTCCGAAGGGTaGCTCGCCGAAGTCGGGCCG | + |
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Preference number: 5 (lower is better) Translates to: LGQEGNLVRGRPAGPRSTAASEG*LAEVGP Trigger: CGGCCCGACTTCGGCGAGCAACCCTTCGGAGGCGGC...GGTGGACCTGGGACCTGCAGGCCGCCCTCGGACTAGGTTACCTTCCTGCCCGAG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS-3UTR CAA 90 bp | CCCACAGTTACTAAGCCACACAGCTCCCTGAAGGGGGTGGTGTGGAGGAGACCATCGCACGGAGGAAACTaGGGGTCCACGTACTTAGAG | + |
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Preference number: 5 (lower is better) Translates to: PTVTKPHSSLKGVVWRRPSHGGN*GSTYLE Trigger: CTCTAAGTACGTGGACCCCAAGTTTCCTCCGTGCGA...TGGTCTCCTCCACACCACCCCCTTCAGGGAGCTGTGTGGCTTAGTAACTGTGGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS-3UTR CAA 90 bp | TTGCAAATTCAATCCACCAGCAGAGATTTTCAGGAGTTTAATGACTCGCCAAGGGCCGCCTCCGAAGGGTaGCTCGCCGAAGTCGGGCCG | + |
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Preference number: 5 (lower is better) Translates to: LQIQSTSRDFQEFNDSPRAASEG*LAEVGP Trigger: CGGCCCGACTTCGGCGAGCAACCCTTCGGAGGCGGC...CCTTGGCGAGTCATTAAACTCCTGAAAATCTCTGCTGGTGGATTGAATTTGCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS-3UTR CAA 90 bp | CAATCCACCAGCAGAGATTTTCAGGAGTTTAATGACTCGCCAAGGGTTTATGTTGGTGGTCCTTGGCCATaGGCTGCAAATGCTGGCCCG | + |
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Preference number: 5 (lower is better) Translates to: QSTSRDFQEFNDSPRVYVGGPWP*AANAGP Trigger: CGGGCCAGCATTTGCAGCCAATGGCCAAGGACCACC...AACATAAACCCTTGGCGAGTCATTAAACTCCTGAAAATCTCTGCTGGTGGATTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS-3UTR CAA 90 bp | TTTAATGACTCGCCAAGGGTTTATGTTCTCAGTAGCTCCTGCCATATGATAATCGGTGGTCCTTGGCCATaGGCTGCAAATGCTGGCCCG | + |
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Preference number: 5 (lower is better) Translates to: FNDSPRVYVLSSSCHMIIGGPWP*AANAGP Trigger: CGGGCCAGCATTTGCAGCCAATGGCCAAGGACCACC...GATTATCATATGGCAGGAGCTACTGAGAACATAAACCCTTGGCGAGTCATTAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS-3UTR CAA 90 bp | TGCAAATTCAATCCACCAGCAGAGATTTTCAGGAGTTTAATGACTCGCCAAGGGGAAGAAGACCTGCCCTaGGTGTTGGGCAGTTTGTGG | + |
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Preference number: 5 (lower is better) Translates to: CKFNPPAEIFRSLMTRQGEEDLP*VLGSLW Trigger: CCACAAACTGCCCAACACCAAGGGCAGGTCTTCTTC...CCCTTGGCGAGTCATTAAACTCCTGAAAATCTCTGCTGGTGGATTGAATTTGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS-3UTR CAA 90 bp | TTGCAAATTCAATCCACCAGCAGAGATTTTCAGGAGTTTAATGACTCGCCAAGGTCGCACGGAGGAAACTaGGGGTCCACGTACTTAGAG | + |
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Preference number: 5 (lower is better) Translates to: LQIQSTSRDFQEFNDSPRSHGGN*GSTYLE Trigger: CTCTAAGTACGTGGACCCCAAGTTTCCTCCGTGCGA...CCTTGGCGAGTCATTAAACTCCTGAAAATCTCTGCTGGTGGATTGAATTTGCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS TCA 72 bp | GCTCGGCTCCTGTCCGTGACCCCTCGCGGGCAGCGCTaGGCCAGGCCCGGGCCCGCCGCCTCCGAAGGGTTG | + |
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Preference number: 6 (lower is better) Translates to: ARLLSVTPRGQR*ARPGPAASEGL Trigger: CAACCCTTCGGAGGCGGCGGGCCCGGGCCTGGCTCAGCGCTGCCCGCGAGGGGTCACGGACAGGAGCCGAGC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS GCA 72 bp | GCCCCGAGGGCTGGAAGTCGGCGCCCTGTGCACCGCTaGCGTAGTAGTCGGCTCCCTGCTCGCCTAGGTAGC | + |
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Preference number: 6 (lower is better) Translates to: APRAGSRRPVHR*RSSRLPARLGS Trigger: GCTACCTAGGCGAGCAGGGAGCCGACTACTACGGCAGCGGTGCACAGGGCGCCGACTTCCAGCCCTCGGGGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS GCA 72 bp | TGGGTAGAGCCCCGAGGGCTGGAAGTCGGCGCCCTGTaGACCGCTGCCGTAGTAGTCGGCTCCCTGCTCGCC | + |
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Preference number: 6 (lower is better) Translates to: WVEPRGLEVGAL*TAAVVVGSLLA Trigger: GGCGAGCAGGGAGCCGACTACTACGGCAGCGGTGCACAGGGCGCCGACTTCCAGCCCTCGGGGCTCTACCCA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS GCA 72 bp | AGGTCCGTATGGTGGTCCTTGGCCATTGGCTGCAAATaGTGGCCCGGGGCAGCTGAAGAGGAGCAGGAAGAT | + |
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Preference number: 6 (lower is better) Translates to: RSVWWSLAIGCK*WPGAAEEEQED Trigger: ATCTTCCTGCTCCTCTTCAGCTGCCCCGGGCCAGCATTTGCAGCCAATGGCCAAGGACCACCATACGGACCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS CCA 72 bp | TCCGTATGGTGGTCCTTGGCCATTGGCTGCAAATGCTaGCCCGGGGCAGCTGAAGAGGAGCAGGAAGATGAG | + |
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Preference number: 6 (lower is better) Translates to: SVWWSLAIGCKC*PGAAEEEQEDE Trigger: CTCATCTTCCTGCTCCTCTTCAGCTGCCCCGGGCCAGCATTTGCAGCCAATGGCCAAGGACCACCATACGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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| CDS CAA 72 bp | ATAAGGTCGTCAGGTCCGTATGGTGGTCCTTGGCCATaGGCTGCAAATGCTGGCCCGGGGCAGCTGAAGAGG | + |
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Preference number: 6 (lower is better) Translates to: IRSSGPYGGPWP*AANAGPGQLKR Trigger: CCTCTTCAGCTGCCCCGGGCCAGCATTTGCAGCCAATGGCCAAGGACCACCATACGGACCTGACGACCTTAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047904.4 ENSMUST00000111980.4 |
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