RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HOXD3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000079277

Ensembl transcript IDs: ENSMUST00000047830.8, ENSMUST00000111982.8, ENSMUST00000111983.9, ENSMUST00000140666.2, ENSMUST00000144544.3

Found 233 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ATGGCACTGTCAGGTTTACTGGGGAGGATCCTTGCGGCTGATTTATaGCGAGTCACCCAAAGGAGGACGCGCCTGGAGGGAGGCCCAGTC +
Preference number: 1 (lower is better)
Translates to: MALSGLLGRILAADL*RVTQRRTRLEGGPV
Trigger: GACTGGGCCTCCCTCCAGGCGCGTCCTCCTTTGGGTGACTCGCCATAAATCAGCCGCAAGGATCCTCCCCAGTAAACCTGACAGTGCCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
3UTR TCA 90 bp CTGTGTCGAGTGGTGAGGGCTTCGGCTGTTGAGAAACGACTAGCGTaGGTCCTGCCACCGGGCTGCCTGACTCTACCCATGAAGGACCAT +
Preference number: 1 (lower is better)
Translates to: LCRVVRASAVEKRLA*VLPPGCLTLPMKDH
Trigger: ATGGTCCTTCATGGGTAGAGTCAGGCAGCCCGGTGGCAGGACTCACGCTAGTCGTTTCTCAACAGCCGAAGCCCTCACCACTCGACACAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
3UTR TCA 90 bp GCAGTTTATGGCACTGTCAGGTTTACTGGGGAGGATCCTTGCGGCTaGTTTATGGCGAGTCACCCAAAGGAGGACGCGCCTGGAGGGAGG +
Preference number: 1 (lower is better)
Translates to: AVYGTVRFTGEDPCG*FMASHPKEDAPGGR
Trigger: CCTCCCTCCAGGCGCGTCCTCCTTTGGGTGACTCGCCATAAATCAGCCGCAAGGATCCTCCCCAGTAAACCTGACAGTGCCATAAACTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
3UTR TCA 90 bp TCCTTTTCCCCCAACCCGGGATCATACAGAGGGATGAAGACAGAGTaGTCTGCTTGCAGATGTGTGCGATTAACACAGATACACTTCCAA +
Preference number: 1 (lower is better)
Translates to: SFSPNPGSYRGMKTE*SACRCVRLTQIHFQ
Trigger: TTGGAAGTGTATCTGTGTTAATCGCACACATCTGCAAGCAGATCACTCTGTCTTCATCCCTCTGTATGATCCCGGGTTGGGGGAAAAGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111983.9
3UTR GCA 90 bp TTCCCCCAACCCGGGATCATACAGAGGGATGAAGACAGAGTGATCTaGTTGCAGATGTGTGCGATTAACACAGATACACTTCCAACTGAA +
Preference number: 1 (lower is better)
Translates to: FPQPGIIQRDEDRVI*LQMCAINTDTLPTE
Trigger: TTCAGTTGGAAGTGTATCTGTGTTAATCGCACACATCTGCAAGCAGATCACTCTGTCTTCATCCCTCTGTATGATCCCGGGTTGGGGGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111983.9
3UTR-3UTR GCA 90 bp GGCCGCTGGAAGCCACTCGTGAGGCATCCGCCAGGCCAGATCAGGGAGGGGGATCCCCACCACCACCTCTaGCACCAAAACCAGAGAGGT +
Preference number: 2 (lower is better)
Translates to: GRWKPLVRHPPGQIREGDPHHHL*HQNQRG
Trigger: ACCTCTCTGGTTTTGGTGGCAGAGGTGGTGGTGGGG...ATCCCCCTCCCTGATCTGGCCTGGCGGATGCCTCACGAGTGGCTTCCAGCGGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
3UTR-3UTR GCA 90 bp GCCACTCGTGAGGCATCCGCCAGGCCAGATCAGGGAGGGGGATCCCCTAAACTGCCCCACCACCACCTCTaGCACCAAAACCAGAGAGGT +
Preference number: 2 (lower is better)
Translates to: ATREASARPDQGGGSPKLPHHHL*HQNQRG
Trigger: ACCTCTCTGGTTTTGGTGGCAGAGGTGGTGGTGGGG...CAGTTTAGGGGATCCCCCTCCCTGATCTGGCCTGGCGGATGCCTCACGAGTGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
3UTR-3UTR CCA 90 bp GCACTGTCAGGTTTACTGGGGAGGATCCTTGCGGCTGATTTATGGCGAGTCACCAAAGGAGGACGCGCCTaGAGGGAGGCCCAGTCGCGT +
Preference number: 2 (lower is better)
Translates to: ALSGLLGRILAADLWRVTKGGRA*REAQSR
Trigger: ACGCGACTGGGCCTCCCTCCAGGCGCGTCCTCCTTT...GGTGACTCGCCATAAATCAGCCGCAAGGATCCTCCCCAGTAAACCTGACAGTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
3UTR CAA 90 bp TCGGTCCGCAGTTTATGGCACTGTCAGGTTTACTGGGGAGGATCCTaGCGGCTGATTTATGGCGAGTCACCCAAAGGAGGACGCGCCTGG +
Preference number: 2 (lower is better)
Translates to: SVRSLWHCQVYWGGS*RLIYGESPKGGRAW
Trigger: CCAGGCGCGTCCTCCTTTGGGTGACTCGCCATAAATCAGCCGCAAGGATCCTCCCCAGTAAACCTGACAGTGCCATAAACTGCGGACCGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
3UTR-3UTR TCA 90 bp TTGTTTAGTCCGATGCAATCTTTACAGGAGGGGACGGAGCATTATAAATTAAGGGCTGGAAGCCACTCGTaGGGCATCCGCCAGGCCAGA +
Preference number: 2 (lower is better)
Translates to: LFSPMQSLQEGTEHYKLRAGSHS*GIRQAR
Trigger: TCTGGCCTGGCGGATGCCTCACGAGTGGCTTCCAGC...CCTTAATTTATAATGCTCCGTCCCCTCCTGTAAAGATTGCATCGGACTAAACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
3UTR-3UTR CCA 90 bp TACAGATTGTTTAGTCCGATGCAATCTTTACAGGAGGGGACGGAGCATTATAAAAAAGGAGGACGCGCCTaGAGGGAGGCCCAGTCGCGT +
Preference number: 2 (lower is better)
Translates to: YRLFSPMQSLQEGTEHYKKGGRA*REAQSR
Trigger: ACGCGACTGGGCCTCCCTCCAGGCGCGTCCTCCTTT...TTTATAATGCTCCGTCCCCTCCTGTAAAGATTGCATCGGACTAAACAATCTGTA
51% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
3UTR-3UTR TCA 90 bp AGTCCGATGCAATCTTTACAGGAGGGGACGGAGCATTATAAATTAAGGTCTCTGGAGGATCCTTGCGGCTaGTTTATGGCGAGTCACCCA +
Preference number: 2 (lower is better)
Translates to: SPMQSLQEGTEHYKLRSLEDPCG*FMASHP
Trigger: TGGGTGACTCGCCATAAATCAGCCGCAAGGATCCTC...CAGAGACCTTAATTTATAATGCTCCGTCCCCTCCTGTAAAGATTGCATCGGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
3UTR-3UTR CCA 90 bp CTCAGTTTTAAGAGCTTAAATGTAATCAAGTATTTCTCCACGCCAATTTTGTGCAAAGGAGGACGCGCCTaGAGGGAGGCCCAGTCGCGT +
Preference number: 2 (lower is better)
Translates to: LSFKSLNVIKYFSTPILCKGGRA*REAQSR
Trigger: ACGCGACTGGGCCTCCCTCCAGGCGCGTCCTCCTTT...GCACAAAATTGGCGTGGAGAAATACTTGATTACATTTAAGCTCTTAAAACTGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111983.9
3UTR-3UTR CCA 90 bp AGTCCGATGCAATCTTTACAGGAGGGGACGGAGCATTATAAATTAAGGTCTCTGCTTGCGGCTGATTTATaGCGAGTCACCCAAAGGAGG +
Preference number: 2 (lower is better)
Translates to: SPMQSLQEGTEHYKLRSLLAADL*RVTQRR
Trigger: CCTCCTTTGGGTGACTCGCCATAAATCAGCCGCAAG...CAGAGACCTTAATTTATAATGCTCCGTCCCCTCCTGTAAAGATTGCATCGGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
3UTR CAA 90 bp CCCCAACCCGGGATCATACAGAGGGATGAAGACAGAGTGATCTGCTaGCAGATGTGTGCGATTAACACAGATACACTTCCAACTGAAAAA +
Preference number: 2 (lower is better)
Translates to: PQPGIIQRDEDRVIC*QMCAINTDTLPTEK
Trigger: TTTTTCAGTTGGAAGTGTATCTGTGTTAATCGCACACATCTGCAAGCAGATCACTCTGTCTTCATCCCTCTGTATGATCCCGGGTTGGGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111983.9
3UTR-3UTR TCA 90 bp TTGTTTAGTCCGATGCAATCTTTACAGGAGGGGACGGAGCATTATAAATTAAGGGAGGATCCTTGCGGCTaGTTTATGGCGAGTCACCCA +
Preference number: 2 (lower is better)
Translates to: LFSPMQSLQEGTEHYKLREDPCG*FMASHP
Trigger: TGGGTGACTCGCCATAAATCAGCCGCAAGGATCCTC...CCTTAATTTATAATGCTCCGTCCCCTCCTGTAAAGATTGCATCGGACTAAACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
3UTR-3UTR GCA 90 bp CTCAGTTTTAAGAGCTTAAATGTAATCAAGTATTTCTCCACGCCAATTTTGTGCGTCCTGCCACCGGGCTaGCTGACTCTACCCATGAAG +
Preference number: 2 (lower is better)
Translates to: LSFKSLNVIKYFSTPILCVLPPG*LTLPMK
Trigger: CTTCATGGGTAGAGTCAGGCAGCCCGGTGGCAGGAC...GCACAAAATTGGCGTGGAGAAATACTTGATTACATTTAAGCTCTTAAAACTGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111983.9
3UTR-3UTR CCA 90 bp TTGTTTAGTCCGATGCAATCTTTACAGGAGGGGACGGAGCATTATAAATTAAGGCTTGCGGCTGATTTATaGCGAGTCACCCAAAGGAGG +
Preference number: 2 (lower is better)
Translates to: LFSPMQSLQEGTEHYKLRLAADL*RVTQRR
Trigger: CCTCCTTTGGGTGACTCGCCATAAATCAGCCGCAAG...CCTTAATTTATAATGCTCCGTCCCCTCCTGTAAAGATTGCATCGGACTAAACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
3UTR CCA 72 bp GGACGCGCCTGGAGGGAGGCCCAGTCGCGTCAGCCCTaGCCGCTGGAAGCCACTCGTGAGGCATCCGCCAGG +
Preference number: 3 (lower is better)
Translates to: GRAWREAQSRQP*PLEATREASAR
Trigger: CCTGGCGGATGCCTCACGAGTGGCTTCCAGCGGCCAGGGCTGACGCGACTGGGCCTCCCTCCAGGCGCGTCC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
3UTR CCA 72 bp CCTGGAGGGAGGCCCAGTCGCGTCAGCCCTGGCCGCTaGAAGCCACTCGTGAGGCATCCGCCAGGCCAGATC +
Preference number: 3 (lower is better)
Translates to: PGGRPSRVSPGR*KPLVRHPPGQI
Trigger: GATCTGGCCTGGCGGATGCCTCACGAGTGGCTTCCAGCGGCCAGGGCTGACGCGACTGGGCCTCCCTCCAGG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
3UTR TCA 72 bp CCAGTCGCGTCAGCCCTGGCCGCTGGAAGCCACTCGTaGGGCATCCGCCAGGCCAGATCAGGGAGGGGGATC +
Preference number: 3 (lower is better)
Translates to: PVASALAAGSHS*GIRQARSGRGI
Trigger: GATCCCCCTCCCTGATCTGGCCTGGCGGATGCCTCACGAGTGGCTTCCAGCGGCCAGGGCTGACGCGACTGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
3UTR TCA 72 bp GTGGTGAGGGCTTCGGCTGTTGAGAAACGACTAGCGTaGGTCCTGCCACCGGGCTGCCTGACTCTACCCATG +
Preference number: 3 (lower is better)
Translates to: VVRASAVEKRLA*VLPPGCLTLPM
Trigger: CATGGGTAGAGTCAGGCAGCCCGGTGGCAGGACTCACGCTAGTCGTTTCTCAACAGCCGAAGCCCTCACCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
3UTR TCA 72 bp GGCACTGTCAGGTTTACTGGGGAGGATCCTTGCGGCTaGTTTATGGCGAGTCACCCAAAGGAGGACGCGCCT +
Preference number: 3 (lower is better)
Translates to: GTVRFTGEDPCG*FMASHPKEDAP
Trigger: AGGCGCGTCCTCCTTTGGGTGACTCGCCATAAATCAGCCGCAAGGATCCTCCCCAGTAAACCTGACAGTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
3UTR CCA 72 bp TCAGGTTTACTGGGGAGGATCCTTGCGGCTGATTTATaGCGAGTCACCCAAAGGAGGACGCGCCTGGAGGGA +
Preference number: 3 (lower is better)
Translates to: SGLLGRILAADL*RVTQRRTRLEG
Trigger: TCCCTCCAGGCGCGTCCTCCTTTGGGTGACTCGCCATAAATCAGCCGCAAGGATCCTCCCCAGTAAACCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
3UTR TCA 72 bp GGTCCTTTTCCCCCAACCCGGGATCATACAGAGGGATaGAGACAGAGTGATCTGCTTGCAGATGTGTGCGAT +
Preference number: 3 (lower is better)
Translates to: GPFPPTRDHTEG*RQSDLLADVCD
Trigger: ATCGCACACATCTGCAAGCAGATCACTCTGTCTTCATCCCTCTGTATGATCCCGGGTTGGGGGAAAAGGACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111983.9
3UTR TCA 72 bp CCCAACCCGGGATCATACAGAGGGATGAAGACAGAGTaGTCTGCTTGCAGATGTGTGCGATTAACACAGATA +
Preference number: 3 (lower is better)
Translates to: PNPGSYRGMKTE*SACRCVRLTQI
Trigger: TATCTGTGTTAATCGCACACATCTGCAAGCAGATCACTCTGTCTTCATCCCTCTGTATGATCCCGGGTTGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111983.9
3UTR CCA 72 bp TCTCAATCCTTTAACATCAACTACAGACACCAGCCATaGTTACAACTGTTCAAAACTATCCTCTCAACTAGT +
Preference number: 3 (lower is better)
Translates to: SQSFNINYRHQP*LQLFKTILSTS
Trigger: ACTAGTTGAGAGGATAGTTTTGAACAGTTGTAACCATGGCTGGTGTCTGTAGTTGATGTTAAAGGATTGAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
3UTR GCA 72 bp TCGCTTCAAATAATAAATACAGATTGTTTAGTCCGATaGAATCTTTACAGGAGGGGACGGAGCATTATAAAT +
Preference number: 3 (lower is better)
Translates to: SLQIINTDCLVR*NLYRRGRSIIN
Trigger: ATTTATAATGCTCCGTCCCCTCCTGTAAAGATTGCATCGGACTAAACAATCTGTATTTATTATTTGAAGCGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR TCA 90 bp CCTGGAGGGAGGCCCAGTCGCGTCAGCCCTGGCCGCTGGAAGCCACTCGTGAGGGAGGCAGGCAGCTGCTaGGCGGCGCCGTGTAGGCGG +
Preference number: 4 (lower is better)
Translates to: PGGRPSRVSPGRWKPLVREAGSC*AAPCRR
Trigger: CCGCCTACACGGCGCCGCTCAGCAGCTGCCTGCCTC...CCTCACGAGTGGCTTCCAGCGGCCAGGGCTGACGCGACTGGGCCTCCCTCCAGG
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp GAGGACGCGCCTGGAGGGAGGCCCAGTCGCGTCAGCCCTGGCCGCTGGAAGCCAAGACCGGCCCGGACGTaGGCGCCATGGAGTCGACGA +
Preference number: 4 (lower is better)
Translates to: EDAPGGRPSRVSPGRWKPRPART*APWSRR
Trigger: TCGTCGACTCCATGGCGCCCACGTCCGGGCCGGTCT...TGGCTTCCAGCGGCCAGGGCTGACGCGACTGGGCCTCCCTCCAGGCGCGTCCTC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR TCA 90 bp GGCCGCTGGAAGCCACTCGTGAGGCATCCGCCAGGCCAGATCAGGGAGGGGGATGAGGCAGGCAGCTGCTaGGCGGCGCCGTGTAGGCGG +
Preference number: 4 (lower is better)
Translates to: GRWKPLVRHPPGQIREGDEAGSC*AAPCRR
Trigger: CCGCCTACACGGCGCCGCTCAGCAGCTGCCTGCCTC...ATCCCCCTCCCTGATCTGGCCTGGCGGATGCCTCACGAGTGGCTTCCAGCGGCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR TCA 90 bp CCTGGAGGGAGGCCCAGTCGCGTCAGCCCTGGCCGCTGGAAGCCACTCGTGAGGGGGTACCGCTTCTGCTaGGGCAGGCAGCTGCTGAGC +
Preference number: 4 (lower is better)
Translates to: PGGRPSRVSPGRWKPLVRGYRFC*GRQLLS
Trigger: GCTCAGCAGCTGCCTGCCTCAGCAGAAGCGGTACCC...CCTCACGAGTGGCTTCCAGCGGCCAGGGCTGACGCGACTGGGCCTCCCTCCAGG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR TCA 90 bp AAAGGAGGACGCGCCTGGAGGGAGGCCCAGTCGCGTCAGCCCTGGCCGCTGGAATTGCTCGCCATGGGGTaGGGCTCGAACTCGGGCGCC +
Preference number: 4 (lower is better)
Translates to: KGGRAWREAQSRQPWPLELLAMG*GSNSGA
Trigger: GGCGCCCGAGTTCGAGCCTCACCCCATGGCGAGCAA...TTCCAGCGGCCAGGGCTGACGCGACTGGGCCTCCCTCCAGGCGCGTCCTCCTTT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp GAGGACGCGCCTGGAGGGAGGCCCAGTCGCGTCAGCCCTGGCCGCTGGAAGCCATTCAGACCAGGGGGTTaGTTGCCACCACCTCCACCC +
Preference number: 4 (lower is better)
Translates to: EDAPGGRPSRVSPGRWKPFRPGG*LPPPPP
Trigger: GGGTGGAGGTGGTGGCAACCAACCCCCTGGTCTGAA...TGGCTTCCAGCGGCCAGGGCTGACGCGACTGGGCCTCCCTCCAGGCGCGTCCTC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR TCA 90 bp TTGCGGCTGATTTATGGCGAGTCACCCAAAGGAGGACGCGCCTGGAGGGAGGCCGAGGCAGGCAGCTGCTaGGCGGCGCCGTGTAGGCGG +
Preference number: 4 (lower is better)
Translates to: LRLIYGESPKGGRAWREAEAGSC*AAPCRR
Trigger: CCGCCTACACGGCGCCGCTCAGCAGCTGCCTGCCTC...GGCCTCCCTCCAGGCGCGTCCTCCTTTGGGTGACTCGCCATAAATCAGCCGCAA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR GCA 90 bp AAAGGAGGACGCGCCTGGAGGGAGGCCCAGTCGCGTCAGCCCTGGCCGCTGGAACTGGCCGAAGACGGGTaGGAGAGGTGGCCCAGATTG +
Preference number: 4 (lower is better)
Translates to: KGGRAWREAQSRQPWPLELAEDG*ERWPRL
Trigger: CAATCTGGGCCACCTCTCGCACCCGTCTTCGGCCAG...TTCCAGCGGCCAGGGCTGACGCGACTGGGCCTCCCTCCAGGCGCGTCCTCCTTT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp CCTGGAGGGAGGCCCAGTCGCGTCAGCCCTGGCCGCTGGAAGCCACTCGTGAGGAGCTCCTTTGTGGGCTaGGGCTCGGAGAGGTGCAGA +
Preference number: 4 (lower is better)
Translates to: PGGRPSRVSPGRWKPLVRSSFVG*GSERCR
Trigger: TCTGCACCTCTCCGAGCCCCAGCCCACAAAGGAGCT...CCTCACGAGTGGCTTCCAGCGGCCAGGGCTGACGCGACTGGGCCTCCCTCCAGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp GGCCGCTGGAAGCCACTCGTGAGGCATCCGCCAGGCCAGATCAGGGAGGGGGATCGCCGTTGCTCGCCATaGGGTGAGGCTCGAACTCGG +
Preference number: 4 (lower is better)
Translates to: GRWKPLVRHPPGQIREGDRRCSP*GEARTR
Trigger: CCGAGTTCGAGCCTCACCCCATGGCGAGCAACGGCG...ATCCCCCTCCCTGATCTGGCCTGGCGGATGCCTCACGAGTGGCTTCCAGCGGCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp GAGGACGCGCCTGGAGGGAGGCCCAGTCGCGTCAGCCCTGGCCGCTGGAAGCCAAACTGTAGTCCACGCTaGCCGAAGACGGGTGCGAGA +
Preference number: 4 (lower is better)
Translates to: EDAPGGRPSRVSPGRWKPNCSPR*PKTGAR
Trigger: TCTCGCACCCGTCTTCGGCCAGCGTGGACTACAGTT...TGGCTTCCAGCGGCCAGGGCTGACGCGACTGGGCCTCCCTCCAGGCGCGTCCTC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR TCA 90 bp CCTGGAGGGAGGCCCAGTCGCGTCAGCCCTGGCCGCTGGAAGCCACTCGTGAGGTCCAGGATTGGTAGGTaGAGATGGGGGCAAGGTGGG +
Preference number: 4 (lower is better)
Translates to: PGGRPSRVSPGRWKPLVRSRIGR*RWGQGG
Trigger: CCCACCTTGCCCCCATCTTCACCTACCAATCCTGGA...CCTCACGAGTGGCTTCCAGCGGCCAGGGCTGACGCGACTGGGCCTCCCTCCAGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR TCA 90 bp GCCACTCGTGAGGCATCCGCCAGGCCAGATCAGGGAGGGGGATCCCCTAAACTGTTGCTCGCCATGGGGTaGGGCTCGAACTCGGGCGCC +
Preference number: 4 (lower is better)
Translates to: ATREASARPDQGGGSPKLLLAMG*GSNSGA
Trigger: GGCGCCCGAGTTCGAGCCTCACCCCATGGCGAGCAA...CAGTTTAGGGGATCCCCCTCCCTGATCTGGCCTGGCGGATGCCTCACGAGTGGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR GCA 90 bp GGCCGCTGGAAGCCACTCGTGAGGCATCCGCCAGGCCAGATCAGGGAGGGGGATCTGGCCGAAGACGGGTaGGAGAGGTGGCCCAGATTG +
Preference number: 4 (lower is better)
Translates to: GRWKPLVRHPPGQIREGDLAEDG*ERWPRL
Trigger: CAATCTGGGCCACCTCTCGCACCCGTCTTCGGCCAG...ATCCCCCTCCCTGATCTGGCCTGGCGGATGCCTCACGAGTGGCTTCCAGCGGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp AAAGGAGGACGCGCCTGGAGGGAGGCCCAGTCGCGTCAGCCCTGGCCGCTGGAAGGATGCTGGGCCGGGTaGGCTCTTGTCCTCACAGTT +
Preference number: 4 (lower is better)
Translates to: KGGRAWREAQSRQPWPLEGCWAG*ALVLTV
Trigger: AACTGTGAGGACAAGAGCCCACCCGGCCCAGCATCC...TTCCAGCGGCCAGGGCTGACGCGACTGGGCCTCCCTCCAGGCGCGTCCTCCTTT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp GGCCGCTGGAAGCCACTCGTGAGGCATCCGCCAGGCCAGATCAGGGAGGGGGATCACCCTCTTGGATGCTaGGCCGGGTGGGCTCTTGTC +
Preference number: 4 (lower is better)
Translates to: GRWKPLVRHPPGQIREGDHPLGC*AGWALV
Trigger: GACAAGAGCCCACCCGGCCCAGCATCCAAGAGGGTG...ATCCCCCTCCCTGATCTGGCCTGGCGGATGCCTCACGAGTGGCTTCCAGCGGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR TCA 90 bp GCCACTCGTGAGGCATCCGCCAGGCCAGATCAGGGAGGGGGATCCCCTAAACTGGGGTACCGCTTCTGCTaGGGCAGGCAGCTGCTGAGC +
Preference number: 4 (lower is better)
Translates to: ATREASARPDQGGGSPKLGYRFC*GRQLLS
Trigger: GCTCAGCAGCTGCCTGCCTCAGCAGAAGCGGTACCC...CAGTTTAGGGGATCCCCCTCCCTGATCTGGCCTGGCGGATGCCTCACGAGTGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR GCA 90 bp GCCACTCGTGAGGCATCCGCCAGGCCAGATCAGGGAGGGGGATCCCCTAAACTGTACACCGGGCTGCCCTaGAGGTTGGCGCTGGCGAAG +
Preference number: 4 (lower is better)
Translates to: ATREASARPDQGGGSPKLYTGLP*RLALAK
Trigger: CTTCGCCAGCGCCAACCTGCAGGGCAGCCCGGTGTA...CAGTTTAGGGGATCCCCCTCCCTGATCTGGCCTGGCGGATGCCTCACGAGTGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp AAAGGAGGACGCGCCTGGAGGGAGGCCCAGTCGCGTCAGCCCTGGCCGCTGGAAAGTTCAGCTCCTTTGTaGGCTGGGGCTCGGAGAGGT +
Preference number: 4 (lower is better)
Translates to: KGGRAWREAQSRQPWPLESSAPL*AGARRG
Trigger: ACCTCTCCGAGCCCCAGCCCACAAAGGAGCTGAACT...TTCCAGCGGCCAGGGCTGACGCGACTGGGCCTCCCTCCAGGCGCGTCCTCCTTT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR TCA 90 bp GAGGACGCGCCTGGAGGGAGGCCCAGTCGCGTCAGCCCTGGCCGCTGGAAGCCACTCACAGTTCTCTCCTaGAGTGGCACAGCTGTTCTT +
Preference number: 4 (lower is better)
Translates to: EDAPGGRPSRVSPGRWKPLTVLS*SGTAVL
Trigger: AAGAACAGCTGTGCCACTTCAGGAGAGAACTGTGAG...TGGCTTCCAGCGGCCAGGGCTGACGCGACTGGGCCTCCCTCCAGGCGCGTCCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR GCA 90 bp GCCACTCGTGAGGCATCCGCCAGGCCAGATCAGGGAGGGGGATCCCCTAAACTGTGGAGTCGACGAAGTTaGCGCCCACGTACACCGGGC +
Preference number: 4 (lower is better)
Translates to: ATREASARPDQGGGSPKLWSRRS*RPRTPG
Trigger: GCCCGGTGTACGTGGGCGGCAACTTCGTCGACTCCA...CAGTTTAGGGGATCCCCCTCCCTGATCTGGCCTGGCGGATGCCTCACGAGTGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR GCA 90 bp GCCACTCGTGAGGCATCCGCCAGGCCAGATCAGGGAGGGGGATCCCCTAAACTGCTGGCCGAAGACGGGTaGGAGAGGTGGCCCAGATTG +
Preference number: 4 (lower is better)
Translates to: ATREASARPDQGGGSPKLLAEDG*ERWPRL
Trigger: CAATCTGGGCCACCTCTCGCACCCGTCTTCGGCCAG...CAGTTTAGGGGATCCCCCTCCCTGATCTGGCCTGGCGGATGCCTCACGAGTGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp GCCACTCGTGAGGCATCCGCCAGGCCAGATCAGGGAGGGGGATCCCCTAAACTGCACCCTCTTGGATGCTaGGCCGGGTGGGCTCTTGTC +
Preference number: 4 (lower is better)
Translates to: ATREASARPDQGGGSPKLHPLGC*AGWALV
Trigger: GACAAGAGCCCACCCGGCCCAGCATCCAAGAGGGTG...CAGTTTAGGGGATCCCCCTCCCTGATCTGGCCTGGCGGATGCCTCACGAGTGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp TTGCGGCTGATTTATGGCGAGTCACCCAAAGGAGGACGCGCCTGGAGGGAGGCCCGCCGTTGCTCGCCATaGGGTGAGGCTCGAACTCGG +
Preference number: 4 (lower is better)
Translates to: LRLIYGESPKGGRAWREARRCSP*GEARTR
Trigger: CCGAGTTCGAGCCTCACCCCATGGCGAGCAACGGCG...GGCCTCCCTCCAGGCGCGTCCTCCTTTGGGTGACTCGCCATAAATCAGCCGCAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp CACCACCTCTGCCACCAAAACCAGAGAGGTAATTGCGCCTGGCCGGCGGCAACAAGACCGGCCCGGACGTaGGCGCCATGGAGTCGACGA +
Preference number: 4 (lower is better)
Translates to: HHLCHQNQRGNCAWPAATRPART*APWSRR
Trigger: TCGTCGACTCCATGGCGCCCACGTCCGGGCCGGTCT...TGTTGCCGCCGGCCAGGCGCAATTACCTCTCTGGTTTTGGTGGCAGAGGTGGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR GCA 90 bp TTGCGGCTGATTTATGGCGAGTCACCCAAAGGAGGACGCGCCTGGAGGGAGGCCTGGAGTCGACGAAGTTaGCGCCCACGTACACCGGGC +
Preference number: 4 (lower is better)
Translates to: LRLIYGESPKGGRAWREAWSRRS*RPRTPG
Trigger: GCCCGGTGTACGTGGGCGGCAACTTCGTCGACTCCA...GGCCTCCCTCCAGGCGCGTCCTCCTTTGGGTGACTCGCCATAAATCAGCCGCAA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp GGGTCGAGGACTTACCTTAGGGACACCATTACCAGATTAGAGTCCCTCGGTCCGGGCTGCCCTGCAGGTTaGCGCTGGCGAAGCCGCCGC +
Preference number: 4 (lower is better)
Translates to: GSRTYLRDTITRLESLGPGCPAG*RWRSRR
Trigger: GCGGCGGCTTCGCCAGCGCCAACCTGCAGGGCAGCC...CGGACCGAGGGACTCTAATCTGGTAATGGTGTCCCTAAGGTAAGTCCTCGACCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp TCAGGACTCGCCACGGATGGGTCGAGGACTTACCTTAGGGACACCATTACCAGAGGCTGCCCTGCAGGTTaGCGCTGGCGAAGCCGCCGC +
Preference number: 4 (lower is better)
Translates to: SGLATDGSRTYLRDTITRGCPAG*RWRSRR
Trigger: GCGGCGGCTTCGCCAGCGCCAACCTGCAGGGCAGCC...TCTGGTAATGGTGTCCCTAAGGTAAGTCCTCGACCCATCCGTGGCGAGTCCTGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp CACCACCTCTGCCACCAAAACCAGAGAGGTAATTGCGCCTGGCCGGCGGCAACACGGACGTGGGCGCCATaGAGTCGACGAAGTTGCCGC +
Preference number: 4 (lower is better)
Translates to: HHLCHQNQRGNCAWPAATRTWAP*SRRSCR
Trigger: GCGGCAACTTCGTCGACTCCATGGCGCCCACGTCCG...TGTTGCCGCCGGCCAGGCGCAATTACCTCTCTGGTTTTGGTGGCAGAGGTGGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR TCA 90 bp CCTGGAGGGAGGCCCAGTCGCGTCAGCCCTGGCCGCTGGAAGCCACTCGTGAGGTTTGCTGATGGTGGATaGAGAGCTAGAAGCACTGAG +
Preference number: 4 (lower is better)
Translates to: PGGRPSRVSPGRWKPLVRFADGG*RARSTE
Trigger: CTCAGTGCTTCTAGCTCTTCATCCACCATCAGCAAA...CCTCACGAGTGGCTTCCAGCGGCCAGGGCTGACGCGACTGGGCCTCCCTCCAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp GAGGACGCGCCTGGAGGGAGGCCCAGTCGCGTCAGCCCTGGCCGCTGGAAGCCAAGCCATATGTGTCAGTaGCTTTGCTATATCCGTAGC +
Preference number: 4 (lower is better)
Translates to: EDAPGGRPSRVSPGRWKPSHMCQ*LCYIRS
Trigger: GCTACGGATATAGCAAAGCCACTGACACATATGGCT...TGGCTTCCAGCGGCCAGGGCTGACGCGACTGGGCCTCCCTCCAGGCGCGTCCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp GCACTGTCAGGTTTACTGGGGAGGATCCTTGCGGCTGATTTATGGCGAGTCACCCCTGCAGGTTGGCGCTaGCGAAGCCGCCGCCGTTGC +
Preference number: 4 (lower is better)
Translates to: ALSGLLGRILAADLWRVTPAGWR*RSRRRC
Trigger: GCAACGGCGGCGGCTTCGCCAGCGCCAACCTGCAGG...GGTGACTCGCCATAAATCAGCCGCAAGGATCCTCCCCAGTAAACCTGACAGTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp GCCACTCGTGAGGCATCCGCCAGGCCAGATCAGGGAGGGGGATCCCCTAAACTGAACTGTAGTCCACGCTaGCCGAAGACGGGTGCGAGA +
Preference number: 4 (lower is better)
Translates to: ATREASARPDQGGGSPKLNCSPR*PKTGAR
Trigger: TCTCGCACCCGTCTTCGGCCAGCGTGGACTACAGTT...CAGTTTAGGGGATCCCCCTCCCTGATCTGGCCTGGCGGATGCCTCACGAGTGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR GCA 90 bp GGGTCGAGGACTTACCTTAGGGACACCATTACCAGATTAGAGTCCCTCGGTCCGCGAAGCCGCCGCCGTTaGTCGCCATGGGGTGAGGCT +
Preference number: 4 (lower is better)
Translates to: GSRTYLRDTITRLESLGPRSRRR*SPWGEA
Trigger: AGCCTCACCCCATGGCGAGCAACGGCGGCGGCTTCG...CGGACCGAGGGACTCTAATCTGGTAATGGTGTCCCTAAGGTAAGTCCTCGACCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp AGAGTCCCTCGGTCCGCAGTTTATGGCACTGTCAGGTTTACTGGGGAGGATCCTAGACCGGCCCGGACGTaGGCGCCATGGAGTCGACGA +
Preference number: 4 (lower is better)
Translates to: RVPRSAVYGTVRFTGEDPRPART*APWSRR
Trigger: TCGTCGACTCCATGGCGCCCACGTCCGGGCCGGTCT...AGGATCCTCCCCAGTAAACCTGACAGTGCCATAAACTGCGGACCGAGGGACTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR TCA 90 bp AGAGTCCCTCGGTCCGCAGTTTATGGCACTGTCAGGTTTACTGGGGAGGATCCTAGAGGTGGCCCAGATTaGAGACCGGCCCGGACGTGG +
Preference number: 4 (lower is better)
Translates to: RVPRSAVYGTVRFTGEDPRGGPD*RPARTW
Trigger: CCACGTCCGGGCCGGTCTTCAATCTGGGCCACCTCT...AGGATCCTCCCCAGTAAACCTGACAGTGCCATAAACTGCGGACCGAGGGACTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR GCA 90 bp CAGGACTCGCCACGGATGGGTCGAGGACTTACCTTAGGGACACCATTACCAGATTACACCGGGCTGCCCTaGAGGTTGGCGCTGGCGAAG +
Preference number: 4 (lower is better)
Translates to: QDSPRMGRGLTLGTPLPDYTGLP*RLALAK
Trigger: CTTCGCCAGCGCCAACCTGCAGGGCAGCCCGGTGTA...ATCTGGTAATGGTGTCCCTAAGGTAAGTCCTCGACCCATCCGTGGCGAGTCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR GCA 90 bp TGGCACTGTCAGGTTTACTGGGGAGGATCCTTGCGGCTGATTTATGGCGAGTCACCACGTACACCGGGCTaGCCTGCAGGTTGGCGCTGG +
Preference number: 4 (lower is better)
Translates to: WHCQVYWGGSLRLIYGESPRTPG*PAGWRW
Trigger: CCAGCGCCAACCTGCAGGGCAGCCCGGTGTACGTGG...TGACTCGCCATAAATCAGCCGCAAGGATCCTCCCCAGTAAACCTGACAGTGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR GCA 90 bp CCCTCTTCAGGACTCGCCACGGATGGGTCGAGGACTTACCTTAGGGACACCATTTGGAGTCGACGAAGTTaGCGCCCACGTACACCGGGC +
Preference number: 4 (lower is better)
Translates to: PSSGLATDGSRTYLRDTIWSRRS*RPRTPG
Trigger: GCCCGGTGTACGTGGGCGGCAACTTCGTCGACTCCA...AATGGTGTCCCTAAGGTAAGTCCTCGACCCATCCGTGGCGAGTCCTGAAGAGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp CCGCAGTTTATGGCACTGTCAGGTTTACTGGGGAGGATCCTTGCGGCTGATTTACCGTGCGCACCCTCTTaGATGCTGGGCCGGGTGGGC +
Preference number: 4 (lower is better)
Translates to: PQFMALSGLLGRILAADLPCAPS*MLGRVG
Trigger: GCCCACCCGGCCCAGCATCCAAGAGGGTGCGCACGG...TAAATCAGCCGCAAGGATCCTCCCCAGTAAACCTGACAGTGCCATAAACTGCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp CCCTCTTCAGGACTCGCCACGGATGGGTCGAGGACTTACCTTAGGGACACCATTGGCAGCAGCAGGGGGTaGGTAAGGCTGATGAGGAGT +
Preference number: 4 (lower is better)
Translates to: PSSGLATDGSRTYLRDTIGSSRG*VRLMRS
Trigger: ACTCCTCATCAGCCTTACCCACCCCCTGCTGCTGCC...AATGGTGTCCCTAAGGTAAGTCCTCGACCCATCCGTGGCGAGTCCTGAAGAGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp TCTTCAGGACTCGCCACGGATGGGTCGAGGACTTACCTTAGGGACACCATTACCCACCCTCTTGGATGCTaGGCCGGGTGGGCTCTTGTC +
Preference number: 4 (lower is better)
Translates to: SSGLATDGSRTYLRDTITHPLGC*AGWALV
Trigger: GACAAGAGCCCACCCGGCCCAGCATCCAAGAGGGTG...GGTAATGGTGTCCCTAAGGTAAGTCCTCGACCCATCCGTGGCGAGTCCTGAAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp CGCAGTTTATGGCACTGTCAGGTTTACTGGGGAGGATCCTTGCGGCTGATTTATCCGTGCGCACCCTCTTaGATGCTGGGCCGGGTGGGC +
Preference number: 4 (lower is better)
Translates to: RSLWHCQVYWGGSLRLIYPCAPS*MLGRVG
Trigger: GCCCACCCGGCCCAGCATCCAAGAGGGTGCGCACGG...ATAAATCAGCCGCAAGGATCCTCCCCAGTAAACCTGACAGTGCCATAAACTGCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp TCTTCAGGACTCGCCACGGATGGGTCGAGGACTTACCTTAGGGACACCATTACCGACGGGTGCGAGAGGTaGCCCAGATTGAAGACCGGC +
Preference number: 4 (lower is better)
Translates to: SSGLATDGSRTYLRDTITDGCER*PRLKTG
Trigger: GCCGGTCTTCAATCTGGGCCACCTCTCGCACCCGTC...GGTAATGGTGTCCCTAAGGTAAGTCCTCGACCCATCCGTGGCGAGTCCTGAAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR TCA 90 bp CCGCAGTTTATGGCACTGTCAGGTTTACTGGGGAGGATCCTTGCGGCTGATTTAAGAGGTGGCCCAGATTaGAGACCGGCCCGGACGTGG +
Preference number: 4 (lower is better)
Translates to: PQFMALSGLLGRILAADLRGGPD*RPARTW
Trigger: CCACGTCCGGGCCGGTCTTCAATCTGGGCCACCTCT...TAAATCAGCCGCAAGGATCCTCCCCAGTAAACCTGACAGTGCCATAAACTGCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR GCA 90 bp CCCTCTTCAGGACTCGCCACGGATGGGTCGAGGACTTACCTTAGGGACACCATTGGTTGTGGTGGCTGCTaGTCTGAGTTCAGACCAGGG +
Preference number: 4 (lower is better)
Translates to: PSSGLATDGSRTYLRDTIGCGGC*SEFRPG
Trigger: CCCTGGTCTGAACTCAGAGCAGCAGCCACCACAACC...AATGGTGTCCCTAAGGTAAGTCCTCGACCCATCCGTGGCGAGTCCTGAAGAGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR GCA 90 bp CGCAGTTTATGGCACTGTCAGGTTTACTGGGGAGGATCCTTGCGGCTGATTTATCCACGTACACCGGGCTaGCCTGCAGGTTGGCGCTGG +
Preference number: 4 (lower is better)
Translates to: RSLWHCQVYWGGSLRLIYPRTPG*PAGWRW
Trigger: CCAGCGCCAACCTGCAGGGCAGCCCGGTGTACGTGG...ATAAATCAGCCGCAAGGATCCTCCCCAGTAAACCTGACAGTGCCATAAACTGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp GCACTGTCAGGTTTACTGGGGAGGATCCTTGCGGCTGATTTATGGCGAGTCACCAGCTCCTTTGTGGGCTaGGGCTCGGAGAGGTGCAGA +
Preference number: 4 (lower is better)
Translates to: ALSGLLGRILAADLWRVTSSFVG*GSERCR
Trigger: TCTGCACCTCTCCGAGCCCCAGCCCACAAAGGAGCT...GGTGACTCGCCATAAATCAGCCGCAAGGATCCTCCCCAGTAAACCTGACAGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp TCTTCAGGACTCGCCACGGATGGGTCGAGGACTTACCTTAGGGACACCATTACCTTCAGACCAGGGGGTTaGTTGCCACCACCTCCACCC +
Preference number: 4 (lower is better)
Translates to: SSGLATDGSRTYLRDTITFRPGG*LPPPPP
Trigger: GGGTGGAGGTGGTGGCAACCAACCCCCTGGTCTGAA...GGTAATGGTGTCCCTAAGGTAAGTCCTCGACCCATCCGTGGCGAGTCCTGAAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp GGGTCGAGGACTTACCTTAGGGACACCATTACCAGATTAGAGTCCCTCGGTCCGGGATGCTGGGCCGGGTaGGCTCTTGTCCTCACAGTT +
Preference number: 4 (lower is better)
Translates to: GSRTYLRDTITRLESLGPGCWAG*ALVLTV
Trigger: AACTGTGAGGACAAGAGCCCACCCGGCCCAGCATCC...CGGACCGAGGGACTCTAATCTGGTAATGGTGTCCCTAAGGTAAGTCCTCGACCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp CCGCAGTTTATGGCACTGTCAGGTTTACTGGGGAGGATCCTTGCGGCTGATTTACGGACGTGGGCGCCATaGAGTCGACGAAGTTGCCGC +
Preference number: 4 (lower is better)
Translates to: PQFMALSGLLGRILAADLRTWAP*SRRSCR
Trigger: GCGGCAACTTCGTCGACTCCATGGCGCCCACGTCCG...TAAATCAGCCGCAAGGATCCTCCCCAGTAAACCTGACAGTGCCATAAACTGCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR TCA 90 bp AGAGTCCCTCGGTCCGCAGTTTATGGCACTGTCAGGTTTACTGGGGAGGATCCTTCCAGGATTGGTAGGTaGAGATGGGGGCAAGGTGGG +
Preference number: 4 (lower is better)
Translates to: RVPRSAVYGTVRFTGEDPSRIGR*RWGQGG
Trigger: CCCACCTTGCCCCCATCTTCACCTACCAATCCTGGA...AGGATCCTCCCCAGTAAACCTGACAGTGCCATAAACTGCGGACCGAGGGACTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR TCA 90 bp CACCACCTCTGCCACCAAAACCAGAGAGGTAATTGCGCCTGGCCGGCGGCAACACTCACAGTTCTCTCCTaGAGTGGCACAGCTGTTCTT +
Preference number: 4 (lower is better)
Translates to: HHLCHQNQRGNCAWPAATLTVLS*SGTAVL
Trigger: AAGAACAGCTGTGCCACTTCAGGAGAGAACTGTGAG...TGTTGCCGCCGGCCAGGCGCAATTACCTCTCTGGTTTTGGTGGCAGAGGTGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR GCA 90 bp CCCTCTTCAGGACTCGCCACGGATGGGTCGAGGACTTACCTTAGGGACACCATTCAGCCTTCTGCATGGTaGACTCAGGAAGTTCCAGGG +
Preference number: 4 (lower is better)
Translates to: PSSGLATDGSRTYLRDTIQPSAW*TQEVPG
Trigger: CCCTGGAACTTCCTGAGTGCACCATGCAGAAGGCTG...AATGGTGTCCCTAAGGTAAGTCCTCGACCCATCCGTGGCGAGTCCTGAAGAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR GCA 90 bp GCACTGTCAGGTTTACTGGGGAGGATCCTTGCGGCTGATTTATGGCGAGTCACCGGTTGTGGTGGCTGCTaGTCTGAGTTCAGACCAGGG +
Preference number: 4 (lower is better)
Translates to: ALSGLLGRILAADLWRVTGCGGC*SEFRPG
Trigger: CCCTGGTCTGAACTCAGAGCAGCAGCCACCACAACC...GGTGACTCGCCATAAATCAGCCGCAAGGATCCTCCCCAGTAAACCTGACAGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR GCA 90 bp CAGGACTCGCCACGGATGGGTCGAGGACTTACCTTAGGGACACCATTACCAGATCCGTACATATTGGGCTaGGATTTGGCGAAAGCGGGC +
Preference number: 4 (lower is better)
Translates to: QDSPRMGRGLTLGTPLPDPYILG*DLAKAG
Trigger: GCCCGCTTTCGCCAAATCGCAGCCCAATATGTACGG...ATCTGGTAATGGTGTCCCTAAGGTAAGTCCTCGACCCATCCGTGGCGAGTCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp TTGCGGCTGATTTATGGCGAGTCACCCAAAGGAGGACGCGCCTGGAGGGAGGCCAGCCATATGTGTCAGTaGCTTTGCTATATCCGTAGC +
Preference number: 4 (lower is better)
Translates to: LRLIYGESPKGGRAWREASHMCQ*LCYIRS
Trigger: GCTACGGATATAGCAAAGCCACTGACACATATGGCT...GGCCTCCCTCCAGGCGCGTCCTCCTTTGGGTGACTCGCCATAAATCAGCCGCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp TTAGAGTCCCTCGGTCCGCAGTTTATGGCACTGTCAGGTTTACTGGGGAGGATCAGTTCAGCTCCTTTGTaGGCTGGGGCTCGGAGAGGT +
Preference number: 4 (lower is better)
Translates to: LESLGPQFMALSGLLGRISSAPL*AGARRG
Trigger: ACCTCTCCGAGCCCCAGCCCACAAAGGAGCTGAACT...GATCCTCCCCAGTAAACCTGACAGTGCCATAAACTGCGGACCGAGGGACTCTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp CCGCAGTTTATGGCACTGTCAGGTTTACTGGGGAGGATCCTTGCGGCTGATTTATTCAGACCAGGGGGTTaGTTGCCACCACCTCCACCC +
Preference number: 4 (lower is better)
Translates to: PQFMALSGLLGRILAADLFRPGG*LPPPPP
Trigger: GGGTGGAGGTGGTGGCAACCAACCCCCTGGTCTGAA...TAAATCAGCCGCAAGGATCCTCCCCAGTAAACCTGACAGTGCCATAAACTGCGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp CAGGACTCGCCACGGATGGGTCGAGGACTTACCTTAGGGACACCATTACCAGATCACCCTTGGTCTTCTTaGCAGGCACTCCACTTCCAG +
Preference number: 4 (lower is better)
Translates to: QDSPRMGRGLTLGTPLPDHPWSS*QALHFQ
Trigger: CTGGAAGTGGAGTGCCTGCCAAGAAGACCAAGGGTG...ATCTGGTAATGGTGTCCCTAAGGTAAGTCCTCGACCCATCCGTGGCGAGTCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp CGCAGTTTATGGCACTGTCAGGTTTACTGGGGAGGATCCTTGCGGCTGATTTATGACGGGTGCGAGAGGTaGCCCAGATTGAAGACCGGC +
Preference number: 4 (lower is better)
Translates to: RSLWHCQVYWGGSLRLIYDGCER*PRLKTG
Trigger: GCCGGTCTTCAATCTGGGCCACCTCTCGCACCCGTC...ATAAATCAGCCGCAAGGATCCTCCCCAGTAAACCTGACAGTGCCATAAACTGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR GCA 90 bp CCGCAGTTTATGGCACTGTCAGGTTTACTGGGGAGGATCCTTGCGGCTGATTTAGGTTGTGGTGGCTGCTaGTCTGAGTTCAGACCAGGG +
Preference number: 4 (lower is better)
Translates to: PQFMALSGLLGRILAADLGCGGC*SEFRPG
Trigger: CCCTGGTCTGAACTCAGAGCAGCAGCCACCACAACC...TAAATCAGCCGCAAGGATCCTCCCCAGTAAACCTGACAGTGCCATAAACTGCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp AGAGTCCCTCGGTCCGCAGTTTATGGCACTGTCAGGTTTACTGGGGAGGATCCTGGAGCAGGCAGAACTTaGGTAATCACTGTCCAGGGA +
Preference number: 4 (lower is better)
Translates to: RVPRSAVYGTVRFTGEDPGAGRT*VITVQG
Trigger: TCCCTGGACAGTGATTACCCAAGTTCTGCCTGCTCC...AGGATCCTCCCCAGTAAACCTGACAGTGCCATAAACTGCGGACCGAGGGACTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp TCAGGACTCGCCACGGATGGGTCGAGGACTTACCTTAGGGACACCATTACCAGAGGAGCAGGCAGAACTTaGGTAATCACTGTCCAGGGA +
Preference number: 4 (lower is better)
Translates to: SGLATDGSRTYLRDTITRGAGRT*VITVQG
Trigger: TCCCTGGACAGTGATTACCCAAGTTCTGCCTGCTCC...TCTGGTAATGGTGTCCCTAAGGTAAGTCCTCGACCCATCCGTGGCGAGTCCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp CGCAGTTTATGGCACTGTCAGGTTTACTGGGGAGGATCCTTGCGGCTGATTTATAGCTCCTTTGTGGGCTaGGGCTCGGAGAGGTGCAGA +
Preference number: 4 (lower is better)
Translates to: RSLWHCQVYWGGSLRLIYSSFVG*GSERCR
Trigger: TCTGCACCTCTCCGAGCCCCAGCCCACAAAGGAGCT...ATAAATCAGCCGCAAGGATCCTCCCCAGTAAACCTGACAGTGCCATAAACTGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp TGGCACTGTCAGGTTTACTGGGGAGGATCCTTGCGGCTGATTTATGGCGAGTCACACCCTTGGTCTTCTTaGCAGGCACTCCACTTCCAG +
Preference number: 4 (lower is better)
Translates to: WHCQVYWGGSLRLIYGESHPWSS*QALHFQ
Trigger: CTGGAAGTGGAGTGCCTGCCAAGAAGACCAAGGGTG...TGACTCGCCATAAATCAGCCGCAAGGATCCTCCCCAGTAAACCTGACAGTGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp CAGGACTCGCCACGGATGGGTCGAGGACTTACCTTAGGGACACCATTACCAGATCCAGGCCGTACATATTaGGCTGCGATTTGGCGAAAG +
Preference number: 4 (lower is better)
Translates to: QDSPRMGRGLTLGTPLPDPGRTY*AAIWRK
Trigger: CTTTCGCCAAATCGCAGCCCAATATGTACGGCCTGG...ATCTGGTAATGGTGTCCCTAAGGTAAGTCCTCGACCCATCCGTGGCGAGTCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp CACCAGCCATGGTTACAACTGTTCAAAACTATCCTCTCAACTAGTTCAGACCAACCTGCAGGTTGGCGCTaGCGAAGCCGCCGCCGTTGC +
Preference number: 4 (lower is better)
Translates to: HQPWLQLFKTILSTSSDQPAGWR*RSRRRC
Trigger: GCAACGGCGGCGGCTTCGCCAGCGCCAACCTGCAGG...TTGGTCTGAACTAGTTGAGAGGATAGTTTTGAACAGTTGTAACCATGGCTGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp TTGTTTAGTCCGATGCAATCTTTACAGGAGGGGACGGAGCATTATAAATTAAGGGGCTGCCCTGCAGGTTaGCGCTGGCGAAGCCGCCGC +
Preference number: 4 (lower is better)
Translates to: LFSPMQSLQEGTEHYKLRGCPAG*RWRSRR
Trigger: GCGGCGGCTTCGCCAGCGCCAACCTGCAGGGCAGCC...CCTTAATTTATAATGCTCCGTCCCCTCCTGTAAAGATTGCATCGGACTAAACAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp ACTTACCTTAGGGACACCATTACCAGATTAGAGTCCCTCGGTCCGCAGTTTATGGACGGGTGCGAGAGGTaGCCCAGATTGAAGACCGGC +
Preference number: 4 (lower is better)
Translates to: TYLRDTITRLESLGPQFMDGCER*PRLKTG
Trigger: GCCGGTCTTCAATCTGGGCCACCTCTCGCACCCGTC...CATAAACTGCGGACCGAGGGACTCTAATCTGGTAATGGTGTCCCTAAGGTAAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR TCA 90 bp AGTCCGATGCAATCTTTACAGGAGGGGACGGAGCATTATAAATTAAGGTCTCTGGGGTACCGCTTCTGCTaGGGCAGGCAGCTGCTGAGC +
Preference number: 4 (lower is better)
Translates to: SPMQSLQEGTEHYKLRSLGYRFC*GRQLLS
Trigger: GCTCAGCAGCTGCCTGCCTCAGCAGAAGCGGTACCC...CAGAGACCTTAATTTATAATGCTCCGTCCCCTCCTGTAAAGATTGCATCGGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR GCA 90 bp CCGCAGTTTATGGCACTGTCAGGTTTACTGGGGAGGATCCTTGCGGCTGATTTACAGCCTTCTGCATGGTaGACTCAGGAAGTTCCAGGG +
Preference number: 4 (lower is better)
Translates to: PQFMALSGLLGRILAADLQPSAW*TQEVPG
Trigger: CCCTGGAACTTCCTGAGTGCACCATGCAGAAGGCTG...TAAATCAGCCGCAAGGATCCTCCCCAGTAAACCTGACAGTGCCATAAACTGCGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR GCA 90 bp CACCAGCCATGGTTACAACTGTTCAAAACTATCCTCTCAACTAGTTCAGACCAACCACGTACACCGGGCTaGCCTGCAGGTTGGCGCTGG +
Preference number: 4 (lower is better)
Translates to: HQPWLQLFKTILSTSSDQPRTPG*PAGWRW
Trigger: CCAGCGCCAACCTGCAGGGCAGCCCGGTGTACGTGG...TTGGTCTGAACTAGTTGAGAGGATAGTTTTGAACAGTTGTAACCATGGCTGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp CAGGACTCGCCACGGATGGGTCGAGGACTTACCTTAGGGACACCATTACCAGATATGCAGCCTTCTGCATaGTGCACTCAGGAAGTTCCA +
Preference number: 4 (lower is better)
Translates to: QDSPRMGRGLTLGTPLPDMQPSA*CTQEVP
Trigger: TGGAACTTCCTGAGTGCACCATGCAGAAGGCTGCAT...ATCTGGTAATGGTGTCCCTAAGGTAAGTCCTCGACCCATCCGTGGCGAGTCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp GCACTGTCAGGTTTACTGGGGAGGATCCTTGCGGCTGATTTATGGCGAGTCACCATGCAGCCTTCTGCATaGTGCACTCAGGAAGTTCCA +
Preference number: 4 (lower is better)
Translates to: ALSGLLGRILAADLWRVTMQPSA*CTQEVP
Trigger: TGGAACTTCCTGAGTGCACCATGCAGAAGGCTGCAT...GGTGACTCGCCATAAATCAGCCGCAAGGATCCTCCCCAGTAAACCTGACAGTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp TGGCACTGTCAGGTTTACTGGGGAGGATCCTTGCGGCTGATTTATGGCGAGTCAGGAGCAGGCAGAACTTaGGTAATCACTGTCCAGGGA +
Preference number: 4 (lower is better)
Translates to: WHCQVYWGGSLRLIYGESGAGRT*VITVQG
Trigger: TCCCTGGACAGTGATTACCCAAGTTCTGCCTGCTCC...TGACTCGCCATAAATCAGCCGCAAGGATCCTCCCCAGTAAACCTGACAGTGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp ACTTACCTTAGGGACACCATTACCAGATTAGAGTCCCTCGGTCCGCAGTTTATGGGATGCTGGGCCGGGTaGGCTCTTGTCCTCACAGTT +
Preference number: 4 (lower is better)
Translates to: TYLRDTITRLESLGPQFMGCWAG*ALVLTV
Trigger: AACTGTGAGGACAAGAGCCCACCCGGCCCAGCATCC...CATAAACTGCGGACCGAGGGACTCTAATCTGGTAATGGTGTCCCTAAGGTAAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp ACTACAGACACCAGCCATGGTTACAACTGTTCAAAACTATCCTCTCAACTAGTTCCGTGCGCACCCTCTTaGATGCTGGGCCGGGTGGGC +
Preference number: 4 (lower is better)
Translates to: TTDTSHGYNCSKLSSQLVPCAPS*MLGRVG
Trigger: GCCCACCCGGCCCAGCATCCAAGAGGGTGCGCACGG...AACTAGTTGAGAGGATAGTTTTGAACAGTTGTAACCATGGCTGGTGTCTGTAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp AGTCCGATGCAATCTTTACAGGAGGGGACGGAGCATTATAAATTAAGGTCTCTGCGCCGTTGCTCGCCATaGGGTGAGGCTCGAACTCGG +
Preference number: 4 (lower is better)
Translates to: SPMQSLQEGTEHYKLRSLRRCSP*GEARTR
Trigger: CCGAGTTCGAGCCTCACCCCATGGCGAGCAACGGCG...CAGAGACCTTAATTTATAATGCTCCGTCCCCTCCTGTAAAGATTGCATCGGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR TCA 90 bp TCAGGACTCGCCACGGATGGGTCGAGGACTTACCTTAGGGACACCATTACCAGATCATACAGCTACCATTaGGTTCAGCTCCTTTGTGGG +
Preference number: 4 (lower is better)
Translates to: SGLATDGSRTYLRDTITRSYSYH*VQLLCG
Trigger: CCCACAAAGGAGCTGAACTCAATGGTAGCTGTATGA...TCTGGTAATGGTGTCCCTAAGGTAAGTCCTCGACCCATCCGTGGCGAGTCCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR TCA 90 bp GGGTCGAGGACTTACCTTAGGGACACCATTACCAGATTAGAGTCCCTCGGTCCGTTTGCTGATGGTGGATaGAGAGCTAGAAGCACTGAG +
Preference number: 4 (lower is better)
Translates to: GSRTYLRDTITRLESLGPFADGG*RARSTE
Trigger: CTCAGTGCTTCTAGCTCTTCATCCACCATCAGCAAA...CGGACCGAGGGACTCTAATCTGGTAATGGTGTCCCTAAGGTAAGTCCTCGACCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR GCA 90 bp TACAGATTGTTTAGTCCGATGCAATCTTTACAGGAGGGGACGGAGCATTATAAACGAAGCCGCCGCCGTTaGTCGCCATGGGGTGAGGCT +
Preference number: 4 (lower is better)
Translates to: YRLFSPMQSLQEGTEHYKRSRRR*SPWGEA
Trigger: AGCCTCACCCCATGGCGAGCAACGGCGGCGGCTTCG...TTTATAATGCTCCGTCCCCTCCTGTAAAGATTGCATCGGACTAAACAATCTGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR GCA 90 bp ACTACAGACACCAGCCATGGTTACAACTGTTCAAAACTATCCTCTCAACTAGTTCGAAGCCGCCGCCGTTaGTCGCCATGGGGTGAGGCT +
Preference number: 4 (lower is better)
Translates to: TTDTSHGYNCSKLSSQLVRSRRR*SPWGEA
Trigger: AGCCTCACCCCATGGCGAGCAACGGCGGCGGCTTCG...AACTAGTTGAGAGGATAGTTTTGAACAGTTGTAACCATGGCTGGTGTCTGTAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR GCA 90 bp CACCAGCCATGGTTACAACTGTTCAAAACTATCCTCTCAACTAGTTCAGACCAATACACCGGGCTGCCCTaGAGGTTGGCGCTGGCGAAG +
Preference number: 4 (lower is better)
Translates to: HQPWLQLFKTILSTSSDQYTGLP*RLALAK
Trigger: CTTCGCCAGCGCCAACCTGCAGGGCAGCCCGGTGTA...TTGGTCTGAACTAGTTGAGAGGATAGTTTTGAACAGTTGTAACCATGGCTGGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp CGCAGTTTATGGCACTGTCAGGTTTACTGGGGAGGATCCTTGCGGCTGATTTATCACCCTTGGTCTTCTTaGCAGGCACTCCACTTCCAG +
Preference number: 4 (lower is better)
Translates to: RSLWHCQVYWGGSLRLIYHPWSS*QALHFQ
Trigger: CTGGAAGTGGAGTGCCTGCCAAGAAGACCAAGGGTG...ATAAATCAGCCGCAAGGATCCTCCCCAGTAAACCTGACAGTGCCATAAACTGCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR TCA 90 bp ACTACAGACACCAGCCATGGTTACAACTGTTCAAAACTATCCTCTCAACTAGTTAGAGGTGGCCCAGATTaGAGACCGGCCCGGACGTGG +
Preference number: 4 (lower is better)
Translates to: TTDTSHGYNCSKLSSQLVRGGPD*RPARTW
Trigger: CCACGTCCGGGCCGGTCTTCAATCTGGGCCACCTCT...AACTAGTTGAGAGGATAGTTTTGAACAGTTGTAACCATGGCTGGTGTCTGTAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR GCA 90 bp ACTTACCTTAGGGACACCATTACCAGATTAGAGTCCCTCGGTCCGCAGTTTATGCCGTACATATTGGGCTaGGATTTGGCGAAAGCGGGC +
Preference number: 4 (lower is better)
Translates to: TYLRDTITRLESLGPQFMPYILG*DLAKAG
Trigger: GCCCGCTTTCGCCAAATCGCAGCCCAATATGTACGG...CATAAACTGCGGACCGAGGGACTCTAATCTGGTAATGGTGTCCCTAAGGTAAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp GCACTGTCAGGTTTACTGGGGAGGATCCTTGCGGCTGATTTATGGCGAGTCACCAGCCATATGTGTCAGTaGCTTTGCTATATCCGTAGC +
Preference number: 4 (lower is better)
Translates to: ALSGLLGRILAADLWRVTSHMCQ*LCYIRS
Trigger: GCTACGGATATAGCAAAGCCACTGACACATATGGCT...GGTGACTCGCCATAAATCAGCCGCAAGGATCCTCCCCAGTAAACCTGACAGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp CGCAGTTTATGGCACTGTCAGGTTTACTGGGGAGGATCCTTGCGGCTGATTTATCCAGGCCGTACATATTaGGCTGCGATTTGGCGAAAG +
Preference number: 4 (lower is better)
Translates to: RSLWHCQVYWGGSLRLIYPGRTY*AAIWRK
Trigger: CTTTCGCCAAATCGCAGCCCAATATGTACGGCCTGG...ATAAATCAGCCGCAAGGATCCTCCCCAGTAAACCTGACAGTGCCATAAACTGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
3UTR CAA 72 bp AGTTTATGGCACTGTCAGGTTTACTGGGGAGGATCCTaGCGGCTGATTTATGGCGAGTCACCCAAAGGAGGA +
Preference number: 4 (lower is better)
Translates to: SLWHCQVYWGGS*RLIYGESPKGG
Trigger: TCCTCCTTTGGGTGACTCGCCATAAATCAGCCGCAAGGATCCTCCCCAGTAAACCTGACAGTGCCATAAACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR GCA 90 bp CGCAGTTTATGGCACTGTCAGGTTTACTGGGGAGGATCCTTGCGGCTGATTTATTGGGTTCTCGTAGTATaGAGCCTTCTGCATGGTGCA +
Preference number: 4 (lower is better)
Translates to: RSLWHCQVYWGGSLRLIYWVLVV*SLLHGA
Trigger: TGCACCATGCAGAAGGCTGCATACTACGAGAACCCA...ATAAATCAGCCGCAAGGATCCTCCCCAGTAAACCTGACAGTGCCATAAACTGCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp CACCAGCCATGGTTACAACTGTTCAAAACTATCCTCTCAACTAGTTCAGACCAAGGCAGCAGCAGGGGGTaGGTAAGGCTGATGAGGAGT +
Preference number: 4 (lower is better)
Translates to: HQPWLQLFKTILSTSSDQGSSRG*VRLMRS
Trigger: ACTCCTCATCAGCCTTACCCACCCCCTGCTGCTGCC...TTGGTCTGAACTAGTTGAGAGGATAGTTTTGAACAGTTGTAACCATGGCTGGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp GACAGAGTGATCTGCTTGCAGATGTGTGCGATTAACACAGATACACTTCCAACTAACTGTAGTCCACGCTaGCCGAAGACGGGTGCGAGA +
Preference number: 4 (lower is better)
Translates to: DRVICLQMCAINTDTLPTNCSPR*PKTGAR
Trigger: TCTCGCACCCGTCTTCGGCCAGCGTGGACTACAGTT...AGTTGGAAGTGTATCTGTGTTAATCGCACACATCTGCAAGCAGATCACTCTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111983.9
CDS-3UTR TCA 90 bp CGCAGTTTATGGCACTGTCAGGTTTACTGGGGAGGATCCTTGCGGCTGATTTATTCATACAGCTACCATTaGGTTCAGCTCCTTTGTGGG +
Preference number: 4 (lower is better)
Translates to: RSLWHCQVYWGGSLRLIYSYSYH*VQLLCG
Trigger: CCCACAAAGGAGCTGAACTCAATGGTAGCTGTATGA...ATAAATCAGCCGCAAGGATCCTCCCCAGTAAACCTGACAGTGCCATAAACTGCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR GCA 90 bp AGTCCGATGCAATCTTTACAGGAGGGGACGGAGCATTATAAATTAAGGTCTCTGCCGTACATATTGGGCTaGGATTTGGCGAAAGCGGGC +
Preference number: 4 (lower is better)
Translates to: SPMQSLQEGTEHYKLRSLPYILG*DLAKAG
Trigger: GCCCGCTTTCGCCAAATCGCAGCCCAATATGTACGG...CAGAGACCTTAATTTATAATGCTCCGTCCCCTCCTGTAAAGATTGCATCGGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp ACTACAGACACCAGCCATGGTTACAACTGTTCAAAACTATCCTCTCAACTAGTTGGCAGCAGCAGGGGGTaGGTAAGGCTGATGAGGAGT +
Preference number: 4 (lower is better)
Translates to: TTDTSHGYNCSKLSSQLVGSSRG*VRLMRS
Trigger: ACTCCTCATCAGCCTTACCCACCCCCTGCTGCTGCC...AACTAGTTGAGAGGATAGTTTTGAACAGTTGTAACCATGGCTGGTGTCTGTAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp ACTACAGACACCAGCCATGGTTACAACTGTTCAAAACTATCCTCTCAACTAGTTAGTTCAGCTCCTTTGTaGGCTGGGGCTCGGAGAGGT +
Preference number: 4 (lower is better)
Translates to: TTDTSHGYNCSKLSSQLVSSAPL*AGARRG
Trigger: ACCTCTCCGAGCCCCAGCCCACAAAGGAGCTGAACT...AACTAGTTGAGAGGATAGTTTTGAACAGTTGTAACCATGGCTGGTGTCTGTAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp CTCAGTTTTAAGAGCTTAAATGTAATCAAGTATTTCTCCACGCCAATTTTGTGCCGGACGTGGGCGCCATaGAGTCGACGAAGTTGCCGC +
Preference number: 4 (lower is better)
Translates to: LSFKSLNVIKYFSTPILCRTWAP*SRRSCR
Trigger: GCGGCAACTTCGTCGACTCCATGGCGCCCACGTCCG...GCACAAAATTGGCGTGGAGAAATACTTGATTACATTTAAGCTCTTAAAACTGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111983.9
CDS-3UTR GCA 90 bp ACTACAGACACCAGCCATGGTTACAACTGTTCAAAACTATCCTCTCAACTAGTTCAGCCTTCTGCATGGTaGACTCAGGAAGTTCCAGGG +
Preference number: 4 (lower is better)
Translates to: TTDTSHGYNCSKLSSQLVQPSAW*TQEVPG
Trigger: CCCTGGAACTTCCTGAGTGCACCATGCAGAAGGCTG...AACTAGTTGAGAGGATAGTTTTGAACAGTTGTAACCATGGCTGGTGTCTGTAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CCA 90 bp CACCAGCCATGGTTACAACTGTTCAAAACTATCCTCTCAACTAGTTCAGACCAACCAGGCCGTACATATTaGGCTGCGATTTGGCGAAAG +
Preference number: 4 (lower is better)
Translates to: HQPWLQLFKTILSTSSDQPGRTY*AAIWRK
Trigger: CTTTCGCCAAATCGCAGCCCAATATGTACGGCCTGG...TTGGTCTGAACTAGTTGAGAGGATAGTTTTGAACAGTTGTAACCATGGCTGGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
3UTR CAA 72 bp GGGATCATACAGAGGGATGAAGACAGAGTGATCTGCTaGCAGATGTGTGCGATTAACACAGATACACTTCCA +
Preference number: 4 (lower is better)
Translates to: GIIQRDEDRVIC*QMCAINTDTLP
Trigger: TGGAAGTGTATCTGTGTTAATCGCACACATCTGCAAGCAGATCACTCTGTCTTCATCCCTCTGTATGATCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111983.9
CDS-3UTR TCA 90 bp CACCAGCCATGGTTACAACTGTTCAAAACTATCCTCTCAACTAGTTCAGACCAATTTGCTGATGGTGGATaGAGAGCTAGAAGCACTGAG +
Preference number: 4 (lower is better)
Translates to: HQPWLQLFKTILSTSSDQFADGG*RARSTE
Trigger: CTCAGTGCTTCTAGCTCTTCATCCACCATCAGCAAA...TTGGTCTGAACTAGTTGAGAGGATAGTTTTGAACAGTTGTAACCATGGCTGGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR GCA 90 bp TACAGATTGTTTAGTCCGATGCAATCTTTACAGGAGGGGACGGAGCATTATAAATGGGTTCTCGTAGTATaGAGCCTTCTGCATGGTGCA +
Preference number: 4 (lower is better)
Translates to: YRLFSPMQSLQEGTEHYKWVLVV*SLLHGA
Trigger: TGCACCATGCAGAAGGCTGCATACTACGAGAACCCA...TTTATAATGCTCCGTCCCCTCCTGTAAAGATTGCATCGGACTAAACAATCTGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR TCA 90 bp TTGTTTAGTCCGATGCAATCTTTACAGGAGGGGACGGAGCATTATAAATTAAGGTCATACAGCTACCATTaGGTTCAGCTCCTTTGTGGG +
Preference number: 4 (lower is better)
Translates to: LFSPMQSLQEGTEHYKLRSYSYH*VQLLCG
Trigger: CCCACAAAGGAGCTGAACTCAATGGTAGCTGTATGA...CCTTAATTTATAATGCTCCGTCCCCTCCTGTAAAGATTGCATCGGACTAAACAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS CCA 90 bp GCGGCGCCGTGTAGGCGGCCAGGCCGTACATATTGGGCTGCGATTTaGCGAAAGCGGGCGGCGAGGGTGCGTCGTAGGCCAGGCCGGGCA +
Preference number: 5 (lower is better)
Translates to: AAPCRRPGRTYWAAI*RKRAARVRRRPGRA
Trigger: TGCCCGGCCTGGCCTACGACGCACCCTCGCCGCCCGCTTTCGCCAAATCGCAGCCCAATATGTACGGCCTGGCCGCCTACACGGCGCCGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS TCA 90 bp CGAACTCGGGCGCCGGGTACCGCTTCTGCTGAGGCAGGCAGCTGCTaGGCGGCGCCGTGTAGGCGGCCAGGCCGTACATATTGGGCTGCG +
Preference number: 5 (lower is better)
Translates to: RTRAPGTASAEAGSC*AAPCRRPGRTYWAA
Trigger: CGCAGCCCAATATGTACGGCCTGGCCGCCTACACGGCGCCGCTCAGCAGCTGCCTGCCTCAGCAGAAGCGGTACCCGGCGCCCGAGTTCG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS GCA 90 bp GCCGTACATATTGGGCTGCGATTTGGCGAAAGCGGGCGGCGAGGGTaGGTCGTAGGCCAGGCCGGGCACCGGCGGCAGCTGGCCGGAGTA +
Preference number: 5 (lower is better)
Translates to: AVHIGLRFGESGRRG*VVGQAGHRRQLAGV
Trigger: TACTCCGGCCAGCTGCCGCCGGTGCCCGGCCTGGCCTACGACGCACCCTCGCCGCCCGCTTTCGCCAAATCGCAGCCCAATATGTACGGC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS CCA 90 bp CAGCTGGCCGGAGTAAGCCACGTGGCCCGCCGCTCCTCCAAGAGGTaGGCTGCGCTCCGGGGACTGACCGGCTGGAGAATGCAGGATGCC +
Preference number: 5 (lower is better)
Translates to: QLAGVSHVARRSSKR*AALRGLTGWRMQDA
Trigger: GGCATCCTGCATTCTCCAGCCGGTCAGTCCCCGGAGCGCAGCCCACCTCTTGGAGGAGCGGCGGGCCACGTGGCTTACTCCGGCCAGCTG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp GAGGACGCGCCTGGAGGGAGGCCCAGTCGCGTCAGCCCTGGCCGCTGGAAGCCAATGGAGTCGACGAAGTaGCCGCCCACGTACACCGGG +
Preference number: 5 (lower is better)
Translates to: EDAPGGRPSRVSPGRWKPMESTK*PPTYTG
Trigger: CCCGGTGTACGTGGGCGGCAACTTCGTCGACTCCAT...TGGCTTCCAGCGGCCAGGGCTGACGCGACTGGGCCTCCCTCCAGGCGCGTCCTC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp CCTGGAGGGAGGCCCAGTCGCGTCAGCCCTGGCCGCTGGAAGCCACTCGTGAGGGTTCAGACCAGGGGGTaGGTTGCCACCACCTCCACC +
Preference number: 5 (lower is better)
Translates to: PGGRPSRVSPGRWKPLVRVQTRG*VATTST
Trigger: GGTGGAGGTGGTGGCAACCAACCCCCTGGTCTGAAC...CCTCACGAGTGGCTTCCAGCGGCCAGGGCTGACGCGACTGGGCCTCCCTCCAGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp GGCCGCTGGAAGCCACTCGTGAGGCATCCGCCAGGCCAGATCAGGGAGGGGGATAGACCAGGGGGTTGGTaGCCACCACCTCCACCCTGG +
Preference number: 5 (lower is better)
Translates to: GRWKPLVRHPPGQIREGDRPGGW*PPPPPW
Trigger: CCAGGGTGGAGGTGGTGGCAACCAACCCCCTGGTCT...ATCCCCCTCCCTGATCTGGCCTGGCGGATGCCTCACGAGTGGCTTCCAGCGGCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp AAAGGAGGACGCGCCTGGAGGGAGGCCCAGTCGCGTCAGCCCTGGCCGCTGGAAGGGCCGGGTGGGCTCTaGTCCTCACAGTTCTCTCCT +
Preference number: 5 (lower is better)
Translates to: KGGRAWREAQSRQPWPLEGPGGL*SSQFSP
Trigger: AGGAGAGAACTGTGAGGACAAGAGCCCACCCGGCCC...TTCCAGCGGCCAGGGCTGACGCGACTGGGCCTCCCTCCAGGCGCGTCCTCCTTT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp CCTGGAGGGAGGCCCAGTCGCGTCAGCCCTGGCCGCTGGAAGCCACTCGTGAGGATATTGGGCTGCGATTaGGCGAAAGCGGGCGGCGAG +
Preference number: 5 (lower is better)
Translates to: PGGRPSRVSPGRWKPLVRILGCD*AKAGGE
Trigger: CTCGCCGCCCGCTTTCGCCAAATCGCAGCCCAATAT...CCTCACGAGTGGCTTCCAGCGGCCAGGGCTGACGCGACTGGGCCTCCCTCCAGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS TCA 90 bp ACGTGGCCCGCCGCTCCTCCAAGAGGTGGGCTGCGCTCCGGGGACTaGCCGGCTGGAGAATGCAGGATGCCCTTAGCCTTCTGGTCCTTC +
Preference number: 5 (lower is better)
Translates to: TWPAAPPRGGLRSGD*PAGECRMPLAFWSF
Trigger: GAAGGACCAGAAGGCTAAGGGCATCCTGCATTCTCCAGCCGGTCAGTCCCCGGAGCGCAGCCCACCTCTTGGAGGAGCGGCGGGCCACGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp GAGGACGCGCCTGGAGGGAGGCCCAGTCGCGTCAGCCCTGGCCGCTGGAAGCCATGGAGCAGGCAGAACTaGGGTAATCACTGTCCAGGG +
Preference number: 5 (lower is better)
Translates to: EDAPGGRPSRVSPGRWKPWSRQN*GNHCPG
Trigger: CCCTGGACAGTGATTACCCAAGTTCTGCCTGCTCCA...TGGCTTCCAGCGGCCAGGGCTGACGCGACTGGGCCTCCCTCCAGGCGCGTCCTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp GAGGACGCGCCTGGAGGGAGGCCCAGTCGCGTCAGCCCTGGCCGCTGGAAGCCAACTCCACTTCCAGGATaGGTAGGTGAAGATGGGGGC +
Preference number: 5 (lower is better)
Translates to: EDAPGGRPSRVSPGRWKPTPLPG*VGEDGG
Trigger: GCCCCCATCTTCACCTACCAATCCTGGAAGTGGAGT...TGGCTTCCAGCGGCCAGGGCTGACGCGACTGGGCCTCCCTCCAGGCGCGTCCTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS TCA 90 bp TGTAGTCCACGCTGGCCGAAGACGGGTGCGAGAGGTGGCCCAGATTaGAGACCGGCCCGGACGTGGGCGCCATGGAGTCGACGAAGTTGC +
Preference number: 5 (lower is better)
Translates to: CSPRWPKTGARGGPD*RPARTWAPWSRRSC
Trigger: GCAACTTCGTCGACTCCATGGCGCCCACGTCCGGGCCGGTCTTCAATCTGGGCCACCTCTCGCACCCGTCTTCGGCCAGCGTGGACTACA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp AAAGGAGGACGCGCCTGGAGGGAGGCCCAGTCGCGTCAGCCCTGGCCGCTGGAACCACCCTTGGTCTTCTaGGCAGGCACTCCACTTCCA +
Preference number: 5 (lower is better)
Translates to: KGGRAWREAQSRQPWPLEPPLVF*AGTPLP
Trigger: TGGAAGTGGAGTGCCTGCCAAGAAGACCAAGGGTGG...TTCCAGCGGCCAGGGCTGACGCGACTGGGCCTCCCTCCAGGCGCGTCCTCCTTT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp CCCTCTTCAGGACTCGCCACGGATGGGTCGAGGACTTACCTTAGGGACACCATTGGGCTGCCCTGCAGGTaGGCGCTGGCGAAGCCGCCG +
Preference number: 5 (lower is better)
Translates to: PSSGLATDGSRTYLRDTIGLPCR*ALAKPP
Trigger: CGGCGGCTTCGCCAGCGCCAACCTGCAGGGCAGCCC...AATGGTGTCCCTAAGGTAAGTCCTCGACCCATCCGTGGCGAGTCCTGAAGAGGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp GAGGACGCGCCTGGAGGGAGGCCCAGTCGCGTCAGCCCTGGCCGCTGGAAGCCACAGGGGAAGATCTGTTaGCTGATGGTGGATGAAGAG +
Preference number: 5 (lower is better)
Translates to: EDAPGGRPSRVSPGRWKPQGKIC*LMVDEE
Trigger: CTCTTCATCCACCATCAGCAAACAGATCTTCCCCTG...TGGCTTCCAGCGGCCAGGGCTGACGCGACTGGGCCTCCCTCCAGGCGCGTCCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp ACACCCGCCCATGTGACGATCATGTATAGAAAGAGCATGCAGGCGCTGCTCTGGGGGCTGCCCTGCAGGTaGGCGCTGGCGAAGCCGCCG +
Preference number: 5 (lower is better)
Translates to: TPAHVTIMYRKSMQALLWGLPCR*ALAKPP
Trigger: CGGCGGCTTCGCCAGCGCCAACCTGCAGGGCAGCCC...CCAGAGCAGCGCCTGCATGCTCTTTCTATACATGATCGTCACATGGGCGGGTGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp CCTGGAGGGAGGCCCAGTCGCGTCAGCCCTGGCCGCTGGAAGCCACTCGTGAGGCAGCTGTTCTTCTGCTaGGAGTTCTGTCGGGATTCT +
Preference number: 5 (lower is better)
Translates to: PGGRPSRVSPGRWKPLVRQLFFC*EFCRDS
Trigger: AGAATCCCGACAGAACTCCAAGCAGAAGAACAGCTG...CCTCACGAGTGGCTTCCAGCGGCCAGGGCTGACGCGACTGGGCCTCCCTCCAGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp TCTTCAGGACTCGCCACGGATGGGTCGAGGACTTACCTTAGGGACACCATTACCGCCGTGCGCACCCTCTaGGATGCTGGGCCGGGTGGG +
Preference number: 5 (lower is better)
Translates to: SSGLATDGSRTYLRDTITAVRTL*DAGPGG
Trigger: CCCACCCGGCCCAGCATCCAAGAGGGTGCGCACGGC...GGTAATGGTGTCCCTAAGGTAAGTCCTCGACCCATCCGTGGCGAGTCCTGAAGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp CACCACCTCTGCCACCAAAACCAGAGAGGTAATTGCGCCTGGCCGGCGGCAACAGTTCAGACCAGGGGGTaGGTTGCCACCACCTCCACC +
Preference number: 5 (lower is better)
Translates to: HHLCHQNQRGNCAWPAATVQTRG*VATTST
Trigger: GGTGGAGGTGGTGGCAACCAACCCCCTGGTCTGAAC...TGTTGCCGCCGGCCAGGCGCAATTACCTCTCTGGTTTTGGTGGCAGAGGTGGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp TTGCGGCTGATTTATGGCGAGTCACCCAAAGGAGGACGCGCCTGGAGGGAGGCCTACAGATGTGTCAGTTaGGGGGCCTCGGGCAGGCGT +
Preference number: 5 (lower is better)
Translates to: LRLIYGESPKGGRAWREAYRCVS*GASGRR
Trigger: ACGCCTGCCCGAGGCCCCCAAACTGACACATCTGTA...GGCCTCCCTCCAGGCGCGTCCTCCTTTGGGTGACTCGCCATAAATCAGCCGCAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp TCAGGACTCGCCACGGATGGGTCGAGGACTTACCTTAGGGACACCATTACCAGAAGACCAGGGGGTTGGTaGCCACCACCTCCACCCTGG +
Preference number: 5 (lower is better)
Translates to: SGLATDGSRTYLRDTITRRPGGW*PPPPPW
Trigger: CCAGGGTGGAGGTGGTGGCAACCAACCCCCTGGTCT...TCTGGTAATGGTGTCCCTAAGGTAAGTCCTCGACCCATCCGTGGCGAGTCCTGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp GCACTGTCAGGTTTACTGGGGAGGATCCTTGCGGCTGATTTATGGCGAGTCACCAGACCAGGGGGTTGGTaGCCACCACCTCCACCCTGG +
Preference number: 5 (lower is better)
Translates to: ALSGLLGRILAADLWRVTRPGGW*PPPPPW
Trigger: CCAGGGTGGAGGTGGTGGCAACCAACCCCCTGGTCT...GGTGACTCGCCATAAATCAGCCGCAAGGATCCTCCCCAGTAAACCTGACAGTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp CAGGACTCGCCACGGATGGGTCGAGGACTTACCTTAGGGACACCATTACCAGATGAGAGGTGGCCCAGATaGAAGACCGGCCCGGACGTG +
Preference number: 5 (lower is better)
Translates to: QDSPRMGRGLTLGTPLPDERWPR*KTGPDV
Trigger: CACGTCCGGGCCGGTCTTCAATCTGGGCCACCTCTC...ATCTGGTAATGGTGTCCCTAAGGTAAGTCCTCGACCCATCCGTGGCGAGTCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS TCA 90 bp CTCCACCCTGGCTATTCCCAGTGCCAGGTCTCATACAGCTACCATTaGGTTCAGCTCCTTTGTGGGCTGGGGCTCGGAGAGGTGCAGAGC +
Preference number: 5 (lower is better)
Translates to: LHPGYSQCQVSYSYH*VQLLCGLGLGEVQS
Trigger: GCTCTGCACCTCTCCGAGCCCCAGCCCACAAAGGAGCTGAACTCAATGGTAGCTGTATGAGACCTGGCACTGGGAATAGCCAGGGTGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp GCACTGTCAGGTTTACTGGGGAGGATCCTTGCGGCTGATTTATGGCGAGTCACCGGGCCGGGTGGGCTCTaGTCCTCACAGTTCTCTCCT +
Preference number: 5 (lower is better)
Translates to: ALSGLLGRILAADLWRVTGPGGL*SSQFSP
Trigger: AGGAGAGAACTGTGAGGACAAGAGCCCACCCGGCCC...GGTGACTCGCCATAAATCAGCCGCAAGGATCCTCCCCAGTAAACCTGACAGTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp TGGCACTGTCAGGTTTACTGGGGAGGATCCTTGCGGCTGATTTATGGCGAGTCAGTTCAGACCAGGGGGTaGGTTGCCACCACCTCCACC +
Preference number: 5 (lower is better)
Translates to: WHCQVYWGGSLRLIYGESVQTRG*VATTST
Trigger: GGTGGAGGTGGTGGCAACCAACCCCCTGGTCTGAAC...TGACTCGCCATAAATCAGCCGCAAGGATCCTCCCCAGTAAACCTGACAGTGCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp CCCTCTTCAGGACTCGCCACGGATGGGTCGAGGACTTACCTTAGGGACACCATTCCACCCTTGGTCTTCTaGGCAGGCACTCCACTTCCA +
Preference number: 5 (lower is better)
Translates to: PSSGLATDGSRTYLRDTIPPLVF*AGTPLP
Trigger: TGGAAGTGGAGTGCCTGCCAAGAAGACCAAGGGTGG...AATGGTGTCCCTAAGGTAAGTCCTCGACCCATCCGTGGCGAGTCCTGAAGAGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp TTAGAGTCCCTCGGTCCGCAGTTTATGGCACTGTCAGGTTTACTGGGGAGGATCGGGCCGGGTGGGCTCTaGTCCTCACAGTTCTCTCCT +
Preference number: 5 (lower is better)
Translates to: LESLGPQFMALSGLLGRIGPGGL*SSQFSP
Trigger: AGGAGAGAACTGTGAGGACAAGAGCCCACCCGGCCC...GATCCTCCCCAGTAAACCTGACAGTGCCATAAACTGCGGACCGAGGGACTCTAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp GCACTGTCAGGTTTACTGGGGAGGATCCTTGCGGCTGATTTATGGCGAGTCACCATATTGGGCTGCGATTaGGCGAAAGCGGGCGGCGAG +
Preference number: 5 (lower is better)
Translates to: ALSGLLGRILAADLWRVTILGCD*AKAGGE
Trigger: CTCGCCGCCCGCTTTCGCCAAATCGCAGCCCAATAT...GGTGACTCGCCATAAATCAGCCGCAAGGATCCTCCCCAGTAAACCTGACAGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp CCGCAGTTTATGGCACTGTCAGGTTTACTGGGGAGGATCCTTGCGGCTGATTTAGAGAGGTGGCCCAGATaGAAGACCGGCCCGGACGTG +
Preference number: 5 (lower is better)
Translates to: PQFMALSGLLGRILAADLERWPR*KTGPDV
Trigger: CACGTCCGGGCCGGTCTTCAATCTGGGCCACCTCTC...TAAATCAGCCGCAAGGATCCTCCCCAGTAAACCTGACAGTGCCATAAACTGCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp CCCTCTTCAGGACTCGCCACGGATGGGTCGAGGACTTACCTTAGGGACACCATTATGGTTGCCAGGGATTaGCGCGGCGCAACTGTAGTC +
Preference number: 5 (lower is better)
Translates to: PSSGLATDGSRTYLRDTIMVARD*RGATVV
Trigger: GACTACAGTTGCGCCGCGCAAATCCCTGGCAACCAT...AATGGTGTCCCTAAGGTAAGTCCTCGACCCATCCGTGGCGAGTCCTGAAGAGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp TCTTCAGGACTCGCCACGGATGGGTCGAGGACTTACCTTAGGGACACCATTACCTACAGATGTGTCAGTTaGGGGGCCTCGGGCAGGCGT +
Preference number: 5 (lower is better)
Translates to: SSGLATDGSRTYLRDTITYRCVS*GASGRR
Trigger: ACGCCTGCCCGAGGCCCCCAAACTGACACATCTGTA...GGTAATGGTGTCCCTAAGGTAAGTCCTCGACCCATCCGTGGCGAGTCCTGAAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS GCA 90 bp CCAGGGAGTTGGCAGCAGCAGGGGGTGGGTAAGGCTGATGAGGAGTaGTGTAGCCATATGTGTCAGTGGCTTTGCTATATCCGTAGCCTC +
Preference number: 5 (lower is better)
Translates to: PGSWQQQGVGKADEE*CSHMCQWLCYIRSL
Trigger: GAGGCTACGGATATAGCAAAGCCACTGACACATATGGCTACAGCACTCCTCATCAGCCTTACCCACCCCCTGCTGCTGCCAACTCCCTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
ENSMUST00000144544.3
CDS GCA 90 bp GCTACCATTGAGTTCAGCTCCTTTGTGGGCTGGGGCTCGGAGAGGTaGAGAGCTCTGGATGGAGCAGGCAGAACTTGGGTAATCACTGTC +
Preference number: 5 (lower is better)
Translates to: ATIEFSSFVGWGSER*RALDGAGRTWVITV
Trigger: GACAGTGATTACCCAAGTTCTGCCTGCTCCATCCAGAGCTCTGCACCTCTCCGAGCCCCAGCCCACAAAGGAGCTGAACTCAATGGTAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp TTGCGGCTGATTTATGGCGAGTCACCCAAAGGAGGACGCGCCTGGAGGGAGGCCCTCATACAGCTACCATaGAGTTCAGCTCCTTTGTGG +
Preference number: 5 (lower is better)
Translates to: LRLIYGESPKGGRAWREALIQLP*SSAPLW
Trigger: CCACAAAGGAGCTGAACTCAATGGTAGCTGTATGAG...GGCCTCCCTCCAGGCGCGTCCTCCTTTGGGTGACTCGCCATAAATCAGCCGCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp GCACTGTCAGGTTTACTGGGGAGGATCCTTGCGGCTGATTTATGGCGAGTCACCATGGTTGCCAGGGATTaGCGCGGCGCAACTGTAGTC +
Preference number: 5 (lower is better)
Translates to: ALSGLLGRILAADLWRVTMVARD*RGATVV
Trigger: GACTACAGTTGCGCCGCGCAAATCCCTGGCAACCAT...GGTGACTCGCCATAAATCAGCCGCAAGGATCCTCCCCAGTAAACCTGACAGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS CCA 90 bp AGAACTTGGGTAATCACTGTCCAGGGAGTTGGCAGCAGCAGGGGGTaGGTAAGGCTGATGAGGAGTGCTGTAGCCATATGTGTCAGTGGC +
Preference number: 5 (lower is better)
Translates to: RTWVITVQGVGSSRG*VRLMRSAVAICVSG
Trigger: GCCACTGACACATATGGCTACAGCACTCCTCATCAGCCTTACCCACCCCCTGCTGCTGCCAACTCCCTGGACAGTGATTACCCAAGTTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
ENSMUST00000144544.3
CDS CCA 90 bp TGCTCTGAGTTCAGACCAGGGGGTTGGTTGCCACCACCTCCACCCTaGCTATTCCCAGTGCCAGGTCTCATACAGCTACCATTGAGTTCA +
Preference number: 5 (lower is better)
Translates to: CSEFRPGGWLPPPPP*LFPVPGLIQLPLSS
Trigger: TGAACTCAATGGTAGCTGTATGAGACCTGGCACTGGGAATAGCCAGGGTGGAGGTGGTGGCAACCAACCCCCTGGTCTGAACTCAGAGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp TTAGAGTCCCTCGGTCCGCAGTTTATGGCACTGTCAGGTTTACTGGGGAGGATCTTGAGTTCAGCTCCTTaGTGGGCTGGGGCTCGGAGA +
Preference number: 5 (lower is better)
Translates to: LESLGPQFMALSGLLGRILSSAP*WAGARR
Trigger: TCTCCGAGCCCCAGCCCACAAAGGAGCTGAACTCAA...GATCCTCCCCAGTAAACCTGACAGTGCCATAAACTGCGGACCGAGGGACTCTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp CACCACCTCTGCCACCAAAACCAGAGAGGTAATTGCGCCTGGCCGGCGGCAACACTCATACAGCTACCATaGAGTTCAGCTCCTTTGTGG +
Preference number: 5 (lower is better)
Translates to: HHLCHQNQRGNCAWPAATLIQLP*SSAPLW
Trigger: CCACAAAGGAGCTGAACTCAATGGTAGCTGTATGAG...TGTTGCCGCCGGCCAGGCGCAATTACCTCTCTGGTTTTGGTGGCAGAGGTGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp CAGGACTCGCCACGGATGGGTCGAGGACTTACCTTAGGGACACCATTACCAGATACTCCACTTCCAGGATaGGTAGGTGAAGATGGGGGC +
Preference number: 5 (lower is better)
Translates to: QDSPRMGRGLTLGTPLPDTPLPG*VGEDGG
Trigger: GCCCCCATCTTCACCTACCAATCCTGGAAGTGGAGT...ATCTGGTAATGGTGTCCCTAAGGTAAGTCCTCGACCCATCCGTGGCGAGTCCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp TCAGGACTCGCCACGGATGGGTCGAGGACTTACCTTAGGGACACCATTACCAGAGCCAGGCCGTACATATaGGGCTGCGATTTGGCGAAA +
Preference number: 5 (lower is better)
Translates to: SGLATDGSRTYLRDTITRARPYI*GCDLAK
Trigger: TTTCGCCAAATCGCAGCCCAATATGTACGGCCTGGC...TCTGGTAATGGTGTCCCTAAGGTAAGTCCTCGACCCATCCGTGGCGAGTCCTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp ACTACAGACACCAGCCATGGTTACAACTGTTCAAAACTATCCTCTCAACTAGTTGGGCTGCCCTGCAGGTaGGCGCTGGCGAAGCCGCCG +
Preference number: 5 (lower is better)
Translates to: TTDTSHGYNCSKLSSQLVGLPCR*ALAKPP
Trigger: CGGCGGCTTCGCCAGCGCCAACCTGCAGGGCAGCCC...AACTAGTTGAGAGGATAGTTTTGAACAGTTGTAACCATGGCTGGTGTCTGTAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp ACTACAGACACCAGCCATGGTTACAACTGTTCAAAACTATCCTCTCAACTAGTTGCCGTGCGCACCCTCTaGGATGCTGGGCCGGGTGGG +
Preference number: 5 (lower is better)
Translates to: TTDTSHGYNCSKLSSQLVAVRTL*DAGPGG
Trigger: CCCACCCGGCCCAGCATCCAAGAGGGTGCGCACGGC...AACTAGTTGAGAGGATAGTTTTGAACAGTTGTAACCATGGCTGGTGTCTGTAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp TTGTTTAGTCCGATGCAATCTTTACAGGAGGGGACGGAGCATTATAAATTAAGGGCCGTGCGCACCCTCTaGGATGCTGGGCCGGGTGGG +
Preference number: 5 (lower is better)
Translates to: LFSPMQSLQEGTEHYKLRAVRTL*DAGPGG
Trigger: CCCACCCGGCCCAGCATCCAAGAGGGTGCGCACGGC...CCTTAATTTATAATGCTCCGTCCCCTCCTGTAAAGATTGCATCGGACTAAACAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp CGCAGTTTATGGCACTGTCAGGTTTACTGGGGAGGATCCTTGCGGCTGATTTATATATTGGGCTGCGATTaGGCGAAAGCGGGCGGCGAG +
Preference number: 5 (lower is better)
Translates to: RSLWHCQVYWGGSLRLIYILGCD*AKAGGE
Trigger: CTCGCCGCCCGCTTTCGCCAAATCGCAGCCCAATAT...ATAAATCAGCCGCAAGGATCCTCCCCAGTAAACCTGACAGTGCCATAAACTGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp CGCAGTTTATGGCACTGTCAGGTTTACTGGGGAGGATCCTTGCGGCTGATTTATTACAGATGTGTCAGTTaGGGGGCCTCGGGCAGGCGT +
Preference number: 5 (lower is better)
Translates to: RSLWHCQVYWGGSLRLIYYRCVS*GASGRR
Trigger: ACGCCTGCCCGAGGCCCCCAAACTGACACATCTGTA...ATAAATCAGCCGCAAGGATCCTCCCCAGTAAACCTGACAGTGCCATAAACTGCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS CCA 90 bp AGCCTCCAAAGAGTCCTGGGTTCTCGTAGTATGCAGCCTTCTGCATaGTGCACTCAGGAAGTTCCAGGGTCAGCTGACCCTGCTCAAATA +
Preference number: 5 (lower is better)
Translates to: SLQRVLGSRSMQPSA*CTQEVPGSADPAQI
Trigger: TATTTGAGCAGGGTCAGCTGACCCTGGAACTTCCTGAGTGCACCATGCAGAAGGCTGCATACTACGAGAACCCAGGACTCTTTGGAGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
ENSMUST00000144544.3
CDS CCA 90 bp GGGGTGGGTAAGGCTGATGAGGAGTGCTGTAGCCATATGTGTCAGTaGCTTTGCTATATCCGTAGCCTCCAAAGAGTCCTGGGTTCTCGT +
Preference number: 5 (lower is better)
Translates to: GVGKADEECCSHMCQ*LCYIRSLQRVLGSR
Trigger: ACGAGAACCCAGGACTCTTTGGAGGCTACGGATATAGCAAAGCCACTGACACATATGGCTACAGCACTCCTCATCAGCCTTACCCACCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
ENSMUST00000144544.3
CDS-3UTR CAA 90 bp TCAGGACTCGCCACGGATGGGTCGAGGACTTACCTTAGGGACACCATTACCAGACAGGGGAAGATCTGTTaGCTGATGGTGGATGAAGAG +
Preference number: 5 (lower is better)
Translates to: SGLATDGSRTYLRDTITRQGKIC*LMVDEE
Trigger: CTCTTCATCCACCATCAGCAAACAGATCTTCCCCTG...TCTGGTAATGGTGTCCCTAAGGTAAGTCCTCGACCCATCCGTGGCGAGTCCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp ACACCCGCCCATGTGACGATCATGTATAGAAAGAGCATGCAGGCGCTGCTCTGGCAGCTGTTCTTCTGCTaGGAGTTCTGTCGGGATTCT +
Preference number: 5 (lower is better)
Translates to: TPAHVTIMYRKSMQALLWQLFFC*EFCRDS
Trigger: AGAATCCCGACAGAACTCCAAGCAGAAGAACAGCTG...CCAGAGCAGCGCCTGCATGCTCTTTCTATACATGATCGTCACATGGGCGGGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp GACAGAGTGATCTGCTTGCAGATGTGTGCGATTAACACAGATACACTTCCAACTGAGAGGTGGCCCAGATaGAAGACCGGCCCGGACGTG +
Preference number: 5 (lower is better)
Translates to: DRVICLQMCAINTDTLPTERWPR*KTGPDV
Trigger: CACGTCCGGGCCGGTCTTCAATCTGGGCCACCTCTC...AGTTGGAAGTGTATCTGTGTTAATCGCACACATCTGCAAGCAGATCACTCTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111983.9
CDS GCA 90 bp CTCCAAAGAGTCCTGGGTTCTCGTAGTATGCAGCCTTCTGCATGGTaGACTCAGGAAGTTCCAGGGTCAGCTGACCCTGCTCAAATAACA +
Preference number: 5 (lower is better)
Translates to: LQRVLGSRSMQPSAW*TQEVPGSADPAQIT
Trigger: TGTTATTTGAGCAGGGTCAGCTGACCCTGGAACTTCCTGAGTGCACCATGCAGAAGGCTGCATACTACGAGAACCCAGGACTCTTTGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
ENSMUST00000144544.3
CDS GCA 90 bp TTTGCTATATCCGTAGCCTCCAAAGAGTCCTGGGTTCTCGTAGTATaGAGCCTTCTGCATGGTGCACTCAGGAAGTTCCAGGGTCAGCTG +
Preference number: 5 (lower is better)
Translates to: FAISVASKESWVLVV*SLLHGALRKFQGQL
Trigger: CAGCTGACCCTGGAACTTCCTGAGTGCACCATGCAGAAGGCTGCATACTACGAGAACCCAGGACTCTTTGGAGGCTACGGATATAGCAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
ENSMUST00000144544.3
CDS-3UTR CAA 90 bp CGCAGTTTATGGCACTGTCAGGTTTACTGGGGAGGATCCTTGCGGCTGATTTATACTCCACTTCCAGGATaGGTAGGTGAAGATGGGGGC +
Preference number: 5 (lower is better)
Translates to: RSLWHCQVYWGGSLRLIYTPLPG*VGEDGG
Trigger: GCCCCCATCTTCACCTACCAATCCTGGAAGTGGAGT...ATAAATCAGCCGCAAGGATCCTCCCCAGTAAACCTGACAGTGCCATAAACTGCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp CGCAGTTTATGGCACTGTCAGGTTTACTGGGGAGGATCCTTGCGGCTGATTTATGCCAGGCCGTACATATaGGGCTGCGATTTGGCGAAA +
Preference number: 5 (lower is better)
Translates to: RSLWHCQVYWGGSLRLIYARPYI*GCDLAK
Trigger: TTTCGCCAAATCGCAGCCCAATATGTACGGCCTGGC...ATAAATCAGCCGCAAGGATCCTCCCCAGTAAACCTGACAGTGCCATAAACTGCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp AGTCCGATGCAATCTTTACAGGAGGGGACGGAGCATTATAAATTAAGGTCTCTGATGGAGTCGACGAAGTaGCCGCCCACGTACACCGGG +
Preference number: 5 (lower is better)
Translates to: SPMQSLQEGTEHYKLRSLMESTK*PPTYTG
Trigger: CCCGGTGTACGTGGGCGGCAACTTCGTCGACTCCAT...CAGAGACCTTAATTTATAATGCTCCGTCCCCTCCTGTAAAGATTGCATCGGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp TTAGAGTCCCTCGGTCCGCAGTTTATGGCACTGTCAGGTTTACTGGGGAGGATCCTCATACAGCTACCATaGAGTTCAGCTCCTTTGTGG +
Preference number: 5 (lower is better)
Translates to: LESLGPQFMALSGLLGRILIQLP*SSAPLW
Trigger: CCACAAAGGAGCTGAACTCAATGGTAGCTGTATGAG...GATCCTCCCCAGTAAACCTGACAGTGCCATAAACTGCGGACCGAGGGACTCTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp CCGCAGTTTATGGCACTGTCAGGTTTACTGGGGAGGATCCTTGCGGCTGATTTACAGCTGTTCTTCTGCTaGGAGTTCTGTCGGGATTCT +
Preference number: 5 (lower is better)
Translates to: PQFMALSGLLGRILAADLQLFFC*EFCRDS
Trigger: AGAATCCCGACAGAACTCCAAGCAGAAGAACAGCTG...TAAATCAGCCGCAAGGATCCTCCCCAGTAAACCTGACAGTGCCATAAACTGCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS GCA 90 bp GGTAAGGCTGATGAGGAGTGCTGTAGCCATATGTGTCAGTGGCTTTaGTATATCCGTAGCCTCCAAAGAGTCCTGGGTTCTCGTAGTATG +
Preference number: 5 (lower is better)
Translates to: GKADEECCSHMCQWL*YIRSLQRVLGSRSM
Trigger: CATACTACGAGAACCCAGGACTCTTTGGAGGCTACGGATATAGCAAAGCCACTGACACATATGGCTACAGCACTCCTCATCAGCCTTACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
ENSMUST00000144544.3
CDS CCA 90 bp ATATGTGTCAGTGGCTTTGCTATATCCGTAGCCTCCAAAGAGTCCTaGGTTCTCGTAGTATGCAGCCTTCTGCATGGTGCACTCAGGAAG +
Preference number: 5 (lower is better)
Translates to: ICVSGFAISVASKES*VLVVCSLLHGALRK
Trigger: CTTCCTGAGTGCACCATGCAGAAGGCTGCATACTACGAGAACCCAGGACTCTTTGGAGGCTACGGATATAGCAAAGCCACTGACACATAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
ENSMUST00000144544.3
CDS-3UTR CAA 90 bp TACAGATTGTTTAGTCCGATGCAATCTTTACAGGAGGGGACGGAGCATTATAAAATGGAGTCGACGAAGTaGCCGCCCACGTACACCGGG +
Preference number: 5 (lower is better)
Translates to: YRLFSPMQSLQEGTEHYKMESTK*PPTYTG
Trigger: CCCGGTGTACGTGGGCGGCAACTTCGTCGACTCCAT...TTTATAATGCTCCGTCCCCTCCTGTAAAGATTGCATCGGACTAAACAATCTGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp AGTCCGATGCAATCTTTACAGGAGGGGACGGAGCATTATAAATTAAGGTCTCTGATGGTTGCCAGGGATTaGCGCGGCGCAACTGTAGTC +
Preference number: 5 (lower is better)
Translates to: SPMQSLQEGTEHYKLRSLMVARD*RGATVV
Trigger: GACTACAGTTGCGCCGCGCAAATCCCTGGCAACCAT...CAGAGACCTTAATTTATAATGCTCCGTCCCCTCCTGTAAAGATTGCATCGGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp CACCAGCCATGGTTACAACTGTTCAAAACTATCCTCTCAACTAGTTCAGACCAACCACCCTTGGTCTTCTaGGCAGGCACTCCACTTCCA +
Preference number: 5 (lower is better)
Translates to: HQPWLQLFKTILSTSSDQPPLVF*AGTPLP
Trigger: TGGAAGTGGAGTGCCTGCCAAGAAGACCAAGGGTGG...TTGGTCTGAACTAGTTGAGAGGATAGTTTTGAACAGTTGTAACCATGGCTGGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp AGTCCGATGCAATCTTTACAGGAGGGGACGGAGCATTATAAATTAAGGTCTCTGGCCAGGCCGTACATATaGGGCTGCGATTTGGCGAAA +
Preference number: 5 (lower is better)
Translates to: SPMQSLQEGTEHYKLRSLARPYI*GCDLAK
Trigger: TTTCGCCAAATCGCAGCCCAATATGTACGGCCTGGC...CAGAGACCTTAATTTATAATGCTCCGTCCCCTCCTGTAAAGATTGCATCGGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp TTGTTTAGTCCGATGCAATCTTTACAGGAGGGGACGGAGCATTATAAATTAAGGTTGAGTTCAGCTCCTTaGTGGGCTGGGGCTCGGAGA +
Preference number: 5 (lower is better)
Translates to: LFSPMQSLQEGTEHYKLRLSSAP*WAGARR
Trigger: TCTCCGAGCCCCAGCCCACAAAGGAGCTGAACTCAA...CCTTAATTTATAATGCTCCGTCCCCTCCTGTAAAGATTGCATCGGACTAAACAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp TTGTTTAGTCCGATGCAATCTTTACAGGAGGGGACGGAGCATTATAAATTAAGGTGGAGCAGGCAGAACTaGGGTAATCACTGTCCAGGG +
Preference number: 5 (lower is better)
Translates to: LFSPMQSLQEGTEHYKLRWSRQN*GNHCPG
Trigger: CCCTGGACAGTGATTACCCAAGTTCTGCCTGCTCCA...CCTTAATTTATAATGCTCCGTCCCCTCCTGTAAAGATTGCATCGGACTAAACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS-3UTR CAA 90 bp ACTACAGACACCAGCCATGGTTACAACTGTTCAAAACTATCCTCTCAACTAGTTTGGAGCAGGCAGAACTaGGGTAATCACTGTCCAGGG +
Preference number: 5 (lower is better)
Translates to: TTDTSHGYNCSKLSSQLVWSRQN*GNHCPG
Trigger: CCCTGGACAGTGATTACCCAAGTTCTGCCTGCTCCA...AACTAGTTGAGAGGATAGTTTTGAACAGTTGTAACCATGGCTGGTGTCTGTAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS TCA 72 bp GCGCTGGCGAAGCCGCCGCCGTTGCTCGCCATGGGGTaGGGCTCGAACTCGGGCGCCGGGTACCGCTTCTGC +
Preference number: 6 (lower is better)
Translates to: ALAKPPPLLAMG*GSNSGAGYRFC
Trigger: GCAGAAGCGGTACCCGGCGCCCGAGTTCGAGCCTCACCCCATGGCGAGCAACGGCGGCGGCTTCGCCAGCGC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS GCA 72 bp TGCCCTGCAGGTTGGCGCTGGCGAAGCCGCCGCCGTTaGTCGCCATGGGGTGAGGCTCGAACTCGGGCGCCG +
Preference number: 6 (lower is better)
Translates to: CPAGWRWRSRRR*SPWGEARTRAP
Trigger: CGGCGCCCGAGTTCGAGCCTCACCCCATGGCGAGCAACGGCGGCGGCTTCGCCAGCGCCAACCTGCAGGGCA
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS CCA 72 bp GGTTGGCGCTGGCGAAGCCGCCGCCGTTGCTCGCCATaGGGTGAGGCTCGAACTCGGGCGCCGGGTACCGCT +
Preference number: 6 (lower is better)
Translates to: GWRWRSRRRCSP*GEARTRAPGTA
Trigger: AGCGGTACCCGGCGCCCGAGTTCGAGCCTCACCCCATGGCGAGCAACGGCGGCGGCTTCGCCAGCGCCAACC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS TCA 72 bp GCGCCGGGTACCGCTTCTGCTGAGGCAGGCAGCTGCTaGGCGGCGCCGTGTAGGCGGCCAGGCCGTACATAT +
Preference number: 6 (lower is better)
Translates to: APGTASAEAGSC*AAPCRRPGRTY
Trigger: ATATGTACGGCCTGGCCGCCTACACGGCGCCGCTCAGCAGCTGCCTGCCTCAGCAGAAGCGGTACCCGGCGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS TCA 72 bp CGCTGGCCGAAGACGGGTGCGAGAGGTGGCCCAGATTaGAGACCGGCCCGGACGTGGGCGCCATGGAGTCGA +
Preference number: 6 (lower is better)
Translates to: RWPKTGARGGPD*RPARTWAPWSR
Trigger: TCGACTCCATGGCGCCCACGTCCGGGCCGGTCTTCAATCTGGGCCACCTCTCGCACCCGTCTTCGGCCAGCG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS GCA 72 bp AAGCCACGTGGCCCGCCGCTCCTCCAAGAGGTGGGCTaGGCTCCGGGGACTGACCGGCTGGAGAATGCAGGA +
Preference number: 6 (lower is better)
Translates to: KPRGPPLLQEVG*APGTDRLENAG
Trigger: TCCTGCATTCTCCAGCCGGTCAGTCCCCGGAGCGCAGCCCACCTCTTGGAGGAGCGGCGGGCCACGTGGCTT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS CCA 72 bp GGAGTAAGCCACGTGGCCCGCCGCTCCTCCAAGAGGTaGGCTGCGCTCCGGGGACTGACCGGCTGGAGAATG +
Preference number: 6 (lower is better)
Translates to: GVSHVARRSSKR*AALRGLTGWRM
Trigger: CATTCTCCAGCCGGTCAGTCCCCGGAGCGCAGCCCACCTCTTGGAGGAGCGGCGGGCCACGTGGCTTACTCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS CAA 72 bp ACGCTGGCCGAAGACGGGTGCGAGAGGTGGCCCAGATaGAAGACCGGCCCGGACGTGGGCGCCATGGAGTCG +
Preference number: 6 (lower is better)
Translates to: TLAEDGCERWPR*KTGPDVGAMES
Trigger: CGACTCCATGGCGCCCACGTCCGGGCCGGTCTTCAATCTGGGCCACCTCTCGCACCCGTCTTCGGCCAGCGT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS TCA 72 bp GCCGCTCCTCCAAGAGGTGGGCTGCGCTCCGGGGACTaGCCGGCTGGAGAATGCAGGATGCCCTTAGCCTTC +
Preference number: 6 (lower is better)
Translates to: AAPPRGGLRSGD*PAGECRMPLAF
Trigger: GAAGGCTAAGGGCATCCTGCATTCTCCAGCCGGTCAGTCCCCGGAGCGCAGCCCACCTCTTGGAGGAGCGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS CCA 72 bp TGTAGGCGGCCAGGCCGTACATATTGGGCTGCGATTTaGCGAAAGCGGGCGGCGAGGGTGCGTCGTAGGCCA +
Preference number: 6 (lower is better)
Translates to: CRRPGRTYWAAI*RKRAARVRRRP
Trigger: TGGCCTACGACGCACCCTCGCCGCCCGCTTTCGCCAAATCGCAGCCCAATATGTACGGCCTGGCCGCCTACA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS CCA 72 bp GTACGCCGTGCGCACCCTCTTGGATGCTGGGCCGGGTaGGCTCTTGTCCTCACAGTTCTCTCCTCCATCCCT +
Preference number: 6 (lower is better)
Translates to: VRRAHPLGCWAG*ALVLTVLSSIP
Trigger: AGGGATGGAGGAGAGAACTGTGAGGACAAGAGCCCACCCGGCCCAGCATCCAAGAGGGTGCGCACGGCGTAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140666.2
CDS CAA 72 bp AGGGTCGCAGGGTCCGTGGTGATGGTTGCCAGGGATTaGCGCGGCGCAACTGTAGTCCACGCTGGCCGAAGA +
Preference number: 6 (lower is better)
Translates to: RVAGSVVMVARD*RGATVVHAGRR
Trigger: TCTTCGGCCAGCGTGGACTACAGTTGCGCCGCGCAAATCCCTGGCAACCATCACCACGGACCCTGCGACCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS CCA 72 bp TCCAAGAGGTGGGCTGCGCTCCGGGGACTGACCGGCTaGAGAATGCAGGATGCCCTTAGCCTTCTGGTCCTT +
Preference number: 6 (lower is better)
Translates to: SKRWAALRGLTG*RMQDALSLLVL
Trigger: AAGGACCAGAAGGCTAAGGGCATCCTGCATTCTCCAGCCGGTCAGTCCCCGGAGCGCAGCCCACCTCTTGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS GCA 72 bp GAGTTCAGCTCCTTTGTGGGCTGGGGCTCGGAGAGGTaGAGAGCTCTGGATGGAGCAGGCAGAACTTGGGTA +
Preference number: 6 (lower is better)
Translates to: EFSSFVGWGSER*RALDGAGRTWV
Trigger: TACCCAAGTTCTGCCTGCTCCATCCAGAGCTCTGCACCTCTCCGAGCCCCAGCCCACAAAGGAGCTGAACTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS CAA 90 bp CCTCCACCCTGGCTATTCCCAGTGCCAGGTCTCATACAGCTACCATaGAGTTCAGCTCCTTTGTGGGCTGGGGCTCGGAGAGGTGCAGAG +
Preference number: 6 (lower is better)
Translates to: PPPWLFPVPGLIQLP*SSAPLWAGARRGAE
Trigger: CTCTGCACCTCTCCGAGCCCCAGCCCACAAAGGAGCTGAACTCAATGGTAGCTGTATGAGACCTGGCACTGGGAATAGCCAGGGTGGAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS CAA 90 bp TTCCCAGTGCCAGGTCTCATACAGCTACCATTGAGTTCAGCTCCTTaGTGGGCTGGGGCTCGGAGAGGTGCAGAGCTCTGGATGGAGCAG +
Preference number: 6 (lower is better)
Translates to: FPVPGLIQLPLSSAP*WAGARRGAELWMEQ
Trigger: CTGCTCCATCCAGAGCTCTGCACCTCTCCGAGCCCCAGCCCACAAAGGAGCTGAACTCAATGGTAGCTGTATGAGACCTGGCACTGGGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS CAA 72 bp CCAGGTCTCATACAGCTACCATTGAGTTCAGCTCCTTaGTGGGCTGGGGCTCGGAGAGGTGCAGAGCTCTGG +
Preference number: 6 (lower is better)
Translates to: PGLIQLPLSSAP*WAGARRGAELW
Trigger: CCAGAGCTCTGCACCTCTCCGAGCCCCAGCCCACAAAGGAGCTGAACTCAATGGTAGCTGTATGAGACCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS TCA 72 bp GGCTATTCCCAGTGCCAGGTCTCATACAGCTACCATTaGGTTCAGCTCCTTTGTGGGCTGGGGCTCGGAGAG +
Preference number: 6 (lower is better)
Translates to: GYSQCQVSYSYH*VQLLCGLGLGE
Trigger: CTCTCCGAGCCCCAGCCCACAAAGGAGCTGAACTCAATGGTAGCTGTATGAGACCTGGCACTGGGAATAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS GCA 72 bp GTCCTGGGTTCTCGTAGTATGCAGCCTTCTGCATGGTaGACTCAGGAAGTTCCAGGGTCAGCTGACCCTGCT +
Preference number: 6 (lower is better)
Translates to: VLGSRSMQPSAW*TQEVPGSADPA
Trigger: AGCAGGGTCAGCTGACCCTGGAACTTCCTGAGTGCACCATGCAGAAGGCTGCATACTACGAGAACCCAGGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
ENSMUST00000144544.3
CDS CCA 72 bp CATACAGCTACCATTGAGTTCAGCTCCTTTGTGGGCTaGGGCTCGGAGAGGTGCAGAGCTCTGGATGGAGCA +
Preference number: 6 (lower is better)
Translates to: HTATIEFSSFVG*GSERCRALDGA
Trigger: TGCTCCATCCAGAGCTCTGCACCTCTCCGAGCCCCAGCCCACAAAGGAGCTGAACTCAATGGTAGCTGTATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS CCA 72 bp GGTCTCATACAGCTACCATTGAGTTCAGCTCCTTTGTaGGCTGGGGCTCGGAGAGGTGCAGAGCTCTGGATG +
Preference number: 6 (lower is better)
Translates to: GLIQLPLSSAPL*AGARRGAELWM
Trigger: CATCCAGAGCTCTGCACCTCTCCGAGCCCCAGCCCACAAAGGAGCTGAACTCAATGGTAGCTGTATGAGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS CCA 72 bp AGAGTCCTGGGTTCTCGTAGTATGCAGCCTTCTGCATaGTGCACTCAGGAAGTTCCAGGGTCAGCTGACCCT +
Preference number: 6 (lower is better)
Translates to: RVLGSRSMQPSA*CTQEVPGSADP
Trigger: AGGGTCAGCTGACCCTGGAACTTCCTGAGTGCACCATGCAGAAGGCTGCATACTACGAGAACCCAGGACTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
ENSMUST00000144544.3
CDS CCA 72 bp GTAATCACTGTCCAGGGAGTTGGCAGCAGCAGGGGGTaGGTAAGGCTGATGAGGAGTGCTGTAGCCATATGT +
Preference number: 6 (lower is better)
Translates to: VITVQGVGSSRG*VRLMRSAVAIC
Trigger: ACATATGGCTACAGCACTCCTCATCAGCCTTACCCACCCCCTGCTGCTGCCAACTCCCTGGACAGTGATTAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
ENSMUST00000144544.3
CDS CAA 72 bp TGGCTATTCCCAGTGCCAGGTCTCATACAGCTACCATaGAGTTCAGCTCCTTTGTGGGCTGGGGCTCGGAGA +
Preference number: 6 (lower is better)
Translates to: WLFPVPGLIQLP*SSAPLWAGARR
Trigger: TCTCCGAGCCCCAGCCCACAAAGGAGCTGAACTCAATGGTAGCTGTATGAGACCTGGCACTGGGAATAGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS CAA 90 bp ATGGTGGATGAAGAGCTAGAAGCACTGAGTCCACCCTTGGTCTTCTaGGCAGGCACTCCACTTCCAGGATTGGTAGGTGAAGATGGGGGC +
Preference number: 6 (lower is better)
Translates to: MVDEELEALSPPLVF*AGTPLPGLVGEDGG
Trigger: GCCCCCATCTTCACCTACCAATCCTGGAAGTGGAGTGCCTGCCAAGAAGACCAAGGGTGGACTCAGTGCTTCTAGCTCTTCATCCACCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS GCA 72 bp TCCGTAGCCTCCAAAGAGTCCTGGGTTCTCGTAGTATaGAGCCTTCTGCATGGTGCACTCAGGAAGTTCCAG +
Preference number: 6 (lower is better)
Translates to: SVASKESWVLVV*SLLHGALRKFQ
Trigger: CTGGAACTTCCTGAGTGCACCATGCAGAAGGCTGCATACTACGAGAACCCAGGACTCTTTGGAGGCTACGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
ENSMUST00000144544.3
CDS GCA 72 bp TGGCAGCAGCAGGGGGTGGGTAAGGCTGATGAGGAGTaGTGTAGCCATATGTGTCAGTGGCTTTGCTATATC +
Preference number: 6 (lower is better)
Translates to: WQQQGVGKADEE*CSHMCQWLCYI
Trigger: GATATAGCAAAGCCACTGACACATATGGCTACAGCACTCCTCATCAGCCTTACCCACCCCCTGCTGCTGCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
ENSMUST00000144544.3
CDS CAA 72 bp GAAGAGCTAGAAGCACTGAGTCCACCCTTGGTCTTCTaGGCAGGCACTCCACTTCCAGGATTGGTAGGTGAA +
Preference number: 6 (lower is better)
Translates to: EELEALSPPLVF*AGTPLPGLVGE
Trigger: TTCACCTACCAATCCTGGAAGTGGAGTGCCTGCCAAGAAGACCAAGGGTGGACTCAGTGCTTCTAGCTCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS CAA 90 bp TGTTTGCTGATGGTGGATGAAGAGCTAGAAGCACTGAGTCCACCCTaGGTCTTCTTGGCAGGCACTCCACTTCCAGGATTGGTAGGTGAA +
Preference number: 6 (lower is better)
Translates to: CLLMVDEELEALSPP*VFLAGTPLPGLVGE
Trigger: TTCACCTACCAATCCTGGAAGTGGAGTGCCTGCCAAGAAGACCAAGGGTGGACTCAGTGCTTCTAGCTCTTCATCCACCATCAGCAAACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
CDS CCA 72 bp AGTGGCTTTGCTATATCCGTAGCCTCCAAAGAGTCCTaGGTTCTCGTAGTATGCAGCCTTCTGCATGGTGCA +
Preference number: 6 (lower is better)
Translates to: SGFAISVASKES*VLVVCSLLHGA
Trigger: TGCACCATGCAGAAGGCTGCATACTACGAGAACCCAGGACTCTTTGGAGGCTACGGATATAGCAAAGCCACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
ENSMUST00000144544.3
CDS GCA 72 bp GATGAGGAGTGCTGTAGCCATATGTGTCAGTGGCTTTaGTATATCCGTAGCCTCCAAAGAGTCCTGGGTTCT +
Preference number: 6 (lower is better)
Translates to: DEECCSHMCQWL*YIRSLQRVLGS
Trigger: AGAACCCAGGACTCTTTGGAGGCTACGGATATAGCAAAGCCACTGACACATATGGCTACAGCACTCCTCATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
ENSMUST00000144544.3
CDS CCA 72 bp AAGGCTGATGAGGAGTGCTGTAGCCATATGTGTCAGTaGCTTTGCTATATCCGTAGCCTCCAAAGAGTCCTG +
Preference number: 6 (lower is better)
Translates to: KADEECCSHMCQ*LCYIRSLQRVL
Trigger: CAGGACTCTTTGGAGGCTACGGATATAGCAAAGCCACTGACACATATGGCTACAGCACTCCTCATCAGCCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047830.8
ENSMUST00000111982.8
ENSMUST00000111983.9
ENSMUST00000144544.3