Pregenerated sensors for HOXD13 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001819Ensembl transcript IDs: ENSMUST00000001872.5
Found 84 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGACAGAAATGGAGAACAGAACATGGAGGTTTCAGAGACCAGAACTaGTGTTGTTTCCTTCATCTACAGATGTCGAGGAGAGCAAAGTTT | + |
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Preference number: 1 (lower is better) Translates to: GQKWRTEHGGFRDQN*CCFLHLQMSRRAKF Trigger: AAACTTTGCTCTCCTCGACATCTGTAGATGAAGGAAACAACACCAGTTCTGGTCTCTGAAACCTCCATGTTCTGTTCTCCATTTCTGTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| 3UTR-3UTR CCA 90 bp | AGTTCCCACCCATGGCCACATTGGCTGAGTCTCTTTCCAAGGATTGAGGAGATGTTCCTCATACTGGCCTaGAGGGAGAAACAATGTTTA | + |
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Preference number: 2 (lower is better) Translates to: SSHPWPHWLSLFPRIEEMFLILA*REKQCL Trigger: TAAACATTGTTTCTCCCTCCAGGCCAGTATGAGGAA...CATCTCCTCAATCCTTGGAAAGAGACTCAGCCAATGTGGCCATGGGTGGGAACT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| 3UTR-3UTR CCA 90 bp | AGGAGGTGGACAGAAATGGAGAACAGAACATGGAGGTTTCAGAGACCAGAACTGTTTCTTTTTCCCTCTTaGTCCTTAGAGCTCCATATT | + |
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Preference number: 2 (lower is better) Translates to: RRWTEMENRTWRFQRPELFLFPS*SLELHI Trigger: AATATGGAGCTCTAAGGACCAAGAGGGAAAAAGAAA...CAGTTCTGGTCTCTGAAACCTCCATGTTCTGTTCTCCATTTCTGTCCACCTCCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| 3UTR-3UTR CCA 90 bp | AGGAGGTGGACAGAAATGGAGAACAGAACATGGAGGTTTCAGAGACCAGAACTGCTTGAAAAACACAAATaGATGAAGACTCAGTGGAGA | + |
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Preference number: 2 (lower is better) Translates to: RRWTEMENRTWRFQRPELLEKHK*MKTQWR Trigger: TCTCCACTGAGTCTTCATCCATTTGTGTTTTTCAAG...CAGTTCTGGTCTCTGAAACCTCCATGTTCTGTTCTCCATTTCTGTCCACCTCCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| 3UTR-3UTR TCA 90 bp | TTAAATGCTCGAAGCACTGCTCACACACACTGTATCTACAAAAATAATCTTTCACATGGCCACATTGGCTaGGTCTCTTTCCAAGGATTG | + |
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Preference number: 2 (lower is better) Translates to: LNARSTAHTHCIYKNNLSHGHIG*VSFQGL Trigger: CAATCCTTGGAAAGAGACTCAGCCAATGTGGCCATG...TGAAAGATTATTTTTGTAGATACAGTGTGTGTGAGCAGTGCTTCGAGCATTTAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| 3UTR-3UTR TCA 90 bp | CAAGACATGTTAAAACCACACAAAACAGCAAAGGAGACTGCCAAAGATAAGGGTCCTTGGGGAAACTTCTaGGAGCTAATGATTCAATTA | + |
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Preference number: 2 (lower is better) Translates to: QDMLKPHKTAKETAKDKGPWGNF*ELMIQL Trigger: TAATTGAATCATTAGCTCTCAGAAGTTTCCCCAAGG...ACCCTTATCTTTGGCAGTCTCCTTTGCTGTTTTGTGTGGTTTTAACATGTCTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| 3UTR TCA 72 bp | CCCATGGCCACATTGGCTGAGTCTCTTTCCAAGGATTaGGGAGATGGCCTTAGCTCCATTCCCACAGACCCA | + |
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Preference number: 3 (lower is better) Translates to: PMATLAESLSKD*GDGLSSIPTDP Trigger: TGGGTCTGTGGGAATGGAGCTAAGGCCATCTCCTCAATCCTTGGAAAGAGACTCAGCCAATGTGGCCATGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| 3UTR CCA 72 bp | TGGAGAACAGAACATGGAGGTTTCAGAGACCAGAACTaGTGTTGTTTCCTTCATCTACAGATGTCGAGGAGA | + |
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Preference number: 3 (lower is better) Translates to: WRTEHGGFRDQN*CCFLHLQMSRR Trigger: TCTCCTCGACATCTGTAGATGAAGGAAACAACACCAGTTCTGGTCTCTGAAACCTCCATGTTCTGTTCTCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| 3UTR TCA 72 bp | CCTAAGAGCTGTTTCCACTTGCCTTGGGGAAACTTCTaGGAGCTAATGATTCAATTACACAATCACAGGGTA | + |
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Preference number: 3 (lower is better) Translates to: PKSCFHLPWGNF*ELMIQLHNHRV Trigger: TACCCTGTGATTGTGTAATTGAATCATTAGCTCTCAGAAGTTTCCCCAAGGCAAGTGGAAACAGCTCTTAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| 3UTR GCA 72 bp | AATATTAATAAGGTAGCTGCTTTTAAAGTCATCACGTaGCTTCAACCTCCAAGTTTCAGACTCTCCCAGCGG | + |
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Preference number: 3 (lower is better) Translates to: NINKVAAFKVIT*LQPPSFRLSQR Trigger: CCGCTGGGAGAGTCTGAAACTTGGAGGTTGAAGGCACGTGATGACTTTAAAAGCAGCTACCTTATTAATATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| 3UTR CCA 72 bp | ACATCACTATTTGTGTTAGAAGGAGGTGGACAGAAATaGAGAACAGAACATGGAGGTTTCAGAGACCAGAAC | + |
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Preference number: 3 (lower is better) Translates to: TSLFVLEGGGQK*RTEHGGFRDQN Trigger: GTTCTGGTCTCTGAAACCTCCATGTTCTGTTCTCCATTTCTGTCCACCTCCTTCTAACACAAATAGTGATGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS-3UTR TCA 90 bp | TCTTCACTGAGCTCTGGACAGAAGTTCCCACCCATGGCCACATTGGCTGAGTCTAAGGTTCGTGGCAGCTaGGATCCGCCGCCGCTTGTC | + |
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Preference number: 4 (lower is better) Translates to: SSLSSGQKFPPMATLAESKVRGS*DPPPLV Trigger: GACAAGCGGCGGCGGATCTCAGCTGCCACGAACCTT...AGACTCAGCCAATGTGGCCATGGGTGGGAACTTCTGTCCAGAGCTCAGTGAAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS-3UTR GCA 90 bp | TCTTCACTGAGCTCTGGACAGAAGTTCCCACCCATGGCCACATTGGCTGAGTCTCACTTCCTTGGCTCTTaGGGGCACCTCGTTGGTCGG | + |
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Preference number: 4 (lower is better) Translates to: SSLSSGQKFPPMATLAESHFLGS*GHLVGR Trigger: CCGACCAACGAGGTGCCCGCAAGAGCCAAGGAAGTG...AGACTCAGCCAATGTGGCCATGGGTGGGAACTTCTGTCCAGAGCTCAGTGAAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS-3UTR CCA 90 bp | AGTTCCCACCCATGGCCACATTGGCTGAGTCTCTTTCCAAGGATTGAGGAGATGTCTCCGAAAGGTTCGTaGCAGCTGAGATCCGCCGCC | + |
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Preference number: 4 (lower is better) Translates to: SSHPWPHWLSLFPRIEEMSPKGS*QLRSAA Trigger: GGCGGCGGATCTCAGCTGCCACGAACCTTTCGGAGA...CATCTCCTCAATCCTTGGAAAGAGACTCAGCCAATGTGGCCATGGGTGGGAACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS-3UTR TCA 90 bp | GCTGCTTTTAAAGTCATCACGTGCCTTCAACCTCCAAGTTTCAGACTCTCCCAGCGTGCGGGGACGACTTaGGAGCGTTCTGCTGTAAGC | + |
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Preference number: 4 (lower is better) Translates to: AAFKVITCLQPPSFRLSQRAGTT*ERSAVS Trigger: GCTTACAGCAGAACGCTCTCAAGTCGTCCCCGCACG...CTGGGAGAGTCTGAAACTTGGAGGTTGAAGGCACGTGATGACTTTAAAAGCAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS-3UTR CCA 90 bp | AGGAGGTGGACAGAAATGGAGAACAGAACATGGAGGTTTCAGAGACCAGAACTGGGCTGTTCCACCCGTTaGCTAGCGTCCAGGACTGGT | + |
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Preference number: 4 (lower is better) Translates to: RRWTEMENRTWRFQRPELGCSTR*LASRTG Trigger: ACCAGTCCTGGACGCTAGCCAACGGGTGGAACAGCC...CAGTTCTGGTCTCTGAAACCTCCATGTTCTGTTCTCCATTTCTGTCCACCTCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS-3UTR GCA 90 bp | GGAGAAATAAAGGCATCCACTAGGAATGCTGTTTTCAGGTTCAAAAATCACAGCGTAAGCGAAGCTGGATaGTGCCGCCGCTGCCGCCGC | + |
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Preference number: 4 (lower is better) Translates to: GEIKASTRNAVFRFKNHSVSEAG*CRRCRR Trigger: GCGGCGGCAGCGGCGGCAGCATCCAGCTTCGCTTAC...GCTGTGATTTTTGAACCTGAAAACAGCATTCCTAGTGGATGCCTTTATTTCTCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS-3UTR GCA 90 bp | AGGAGGTGGACAGAAATGGAGAACAGAACATGGAGGTTTCAGAGACCAGAACTGCTACGCCGTGCGACATaGGGCAGCTGTAGTAACCGT | + |
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Preference number: 4 (lower is better) Translates to: RRWTEMENRTWRFQRPELLRRAT*GSCSNR Trigger: ACGGTTACTACAGCTGCCGCATGTCGCACGGCGTAG...CAGTTCTGGTCTCTGAAACCTCCATGTTCTGTTCTCCATTTCTGTCCACCTCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS-3UTR GCA 90 bp | GGAGAAATAAAGGCATCCACTAGGAATGCTGTTTTCAGGTTCAAAAATCACAGCTGGTCGGTACGCTGCTaGTCGCCAGGCCCGACACGT | + |
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Preference number: 4 (lower is better) Translates to: GEIKASTRNAVFRFKNHSWSVRC*SPGPTR Trigger: ACGTGTCGGGCCTGGCGAGCAGCAGCGTACCGACCA...GCTGTGATTTTTGAACCTGAAAACAGCATTCCTAGTGGATGCCTTTATTTCTCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS-3UTR GCA 90 bp | TGCATTCAGACAATTAACTTCTTCACTGAGCTCTGGACAGAAGTTCCCACCCATCTCCATGGAGATGTATaGCTCGTGCCGAGGTTCCCC | + |
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Preference number: 4 (lower is better) Translates to: CIQTINFFTELWTEVPTHLHGDV*LVPRFP Trigger: GGGGAACCTCGGCACGAGGCATACATCTCCATGGAG...ATGGGTGGGAACTTCTGTCCAGAGCTCAGTGAAGAAGTTAATTGTCTGAATGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS-3UTR CCA 90 bp | CAAGACATGTTAAAACCACACAAAACAGCAAAGGAGACTGCCAAAGATAAGGGTTTGCGGGCACCTCGTTaGTCGGTACGCTGCTGCTCG | + |
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Preference number: 4 (lower is better) Translates to: QDMLKPHKTAKETAKDKGLRAPR*SVRCCS Trigger: CGAGCAGCAGCGTACCGACCAACGAGGTGCCCGCAA...ACCCTTATCTTTGGCAGTCTCCTTTGCTGTTTTGTGTGGTTTTAACATGTCTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS-3UTR TCA 90 bp | AGTTCCCACCCATGGCCACATTGGCTGAGTCTCTTTCCAAGGATTGAGGAGATGATCTCCTGGAAAGGATaGTTTCCAAAAATGGGACCC | + |
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Preference number: 4 (lower is better) Translates to: SSHPWPHWLSLFPRIEEMISWKG*FPKMGP Trigger: GGGTCCCATTTTTGGAAATCATCCTTTCCAGGAGAT...CATCTCCTCAATCCTTGGAAAGAGACTCAGCCAATGTGGCCATGGGTGGGAACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS-3UTR GCA 90 bp | ATAGAATTACAAAGTCGGATTGGGCAGCAAAAAGTTTTAGAACCAGATAAAGGTCGTTGGTCGGTACGCTaGTGCTCGCCAGGCCCGACA | + |
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Preference number: 4 (lower is better) Translates to: IELQSRIGQQKVLEPDKGRWSVR*CSPGPT Trigger: TGTCGGGCCTGGCGAGCAGCAGCGTACCGACCAACG...ACCTTTATCTGGTTCTAAAACTTTTTGCTGCCCAATCCGACTTTGTAATTCTAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS-3UTR CCA 90 bp | TGCATTCAGACAATTAACTTCTTCACTGAGCTCTGGACAGAAGTTCCCACCCATCCCCGGATCCAAAAGTaGACACCATGTCGATGTAGC | + |
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Preference number: 4 (lower is better) Translates to: CIQTINFFTELWTEVPTHPRIQK*TPCRCS Trigger: GCTACATCGACATGGTGTCCACTTTTGGATCCGGGG...ATGGGTGGGAACTTCTGTCCAGAGCTCAGTGAAGAAGTTAATTGTCTGAATGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS-3UTR TCA 90 bp | GCTGCTTTTAAAGTCATCACGTGCCTTCAACCTCCAAGTTTCAGACTCTCCCAGCATTCTCCAGTTCTTTaGGCTGCAGTTTGGTGTAAG | + |
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Preference number: 4 (lower is better) Translates to: AAFKVITCLQPPSFRLSQHSPVL*AAVWCK Trigger: CTTACACCAAACTGCAGCTCAAAGAACTGGAGAATG...CTGGGAGAGTCTGAAACTTGGAGGTTGAAGGCACGTGATGACTTTAAAAGCAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS-3UTR CCA 90 bp | GGAGAAATAAAGGCATCCACTAGGAATGCTGTTTTCAGGTTCAAAAATCACAGCCCTGTGGCTGATCCTTaGCACAGTACACCTGGCTGT | + |
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Preference number: 4 (lower is better) Translates to: GEIKASTRNAVFRFKNHSPVADP*HSTPGC Trigger: ACAGCCAGGTGTACTGTGCCAAGGATCAGCCACAGG...GCTGTGATTTTTGAACCTGAAAACAGCATTCCTAGTGGATGCCTTTATTTCTCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS-3UTR TCA 90 bp | ATAGAATTACAAAGTCGGATTGGGCAGCAAAAAGTTTTAGAACCAGATAAAGGTTGGGACCCCTGTGGCTaGTCCTTGGCACAGTACACC | + |
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Preference number: 4 (lower is better) Translates to: IELQSRIGQQKVLEPDKGWDPCG*SLAQYT Trigger: GGTGTACTGTGCCAAGGATCAGCCACAGGGGTCCCA...ACCTTTATCTGGTTCTAAAACTTTTTGCTGCCCAATCCGACTTTGTAATTCTAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS-3UTR TCA 90 bp | AGGAGGTGGACAGAAATGGAGAACAGAACATGGAGGTTTCAGAGACCAGAACTGTTCACCCTTCGATTCTaGAACCAAATGGTTACTTGT | + |
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Preference number: 4 (lower is better) Translates to: RRWTEMENRTWRFQRPELFTLRF*NQMVTC Trigger: ACAAGTAACCATTTGGTTTCAGAATCGAAGGGTGAA...CAGTTCTGGTCTCTGAAACCTCCATGTTCTGTTCTCCATTTCTGTCCACCTCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS-3UTR GCA 90 bp | GGAGAAATAAAGGCATCCACTAGGAATGCTGTTTTCAGGTTCAAAAATCACAGCAGCTGTAGTAACCGTTaGCGAAGTGGTAGCCATAGC | + |
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Preference number: 4 (lower is better) Translates to: GEIKASTRNAVFRFKNHSSCSNR*RSGSHS Trigger: GCTATGGCTACCACTTCGGCAACGGTTACTACAGCT...GCTGTGATTTTTGAACCTGAAAACAGCATTCCTAGTGGATGCCTTTATTTCTCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| 3UTR CAA 72 bp | AACAGAACATGGAGGTTTCAGAGACCAGAACTGGTGTaGTTTCCTTCATCTACAGATGTCGAGGAGAGCAAA | + |
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Preference number: 4 (lower is better) Translates to: NRTWRFQRPELV*FPSSTDVEESK Trigger: TTTGCTCTCCTCGACATCTGTAGATGAAGGAAACAACACCAGTTCTGGTCTCTGAAACCTCCATGTTCTGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS-3UTR CCA 90 bp | AGTATTTTAATAGCTGCATGTAGAGTTGGAGAAATAAAGGCATCCACTAGGAATAAAATGGGACCCCTGTaGCTGATCCTTGGCACAGTA | + |
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Preference number: 4 (lower is better) Translates to: SILIAACRVGEIKASTRNKMGPL*LILGTV Trigger: TACTGTGCCAAGGATCAGCCACAGGGGTCCCATTTT...ATTCCTAGTGGATGCCTTTATTTCTCCAACTCTACATGCAGCTATTAAAATACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS-3UTR CCA 90 bp | AGTATTTTAATAGCTGCATGTAGAGTTGGAGAAATAAAGGCATCCACTAGGAATACGCACATGTCCGGCTaGTTTAAAGCCACATCTCCT | + |
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Preference number: 4 (lower is better) Translates to: SILIAACRVGEIKASTRNTHMSG*FKATSP Trigger: AGGAGATGTGGCTTTAAACCAGCCGGACATGTGCGT...ATTCCTAGTGGATGCCTTTATTTCTCCAACTCTACATGCAGCTATTAAAATACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS GCA 90 bp | CCCTGGGTAAGCGAAGCTGGATGCTGCCGCCGCTGCCGCCGCCGCTaGTGCGGCCGCCGCCGCCGCGCGTCCGGAATGTGTCCCCGCGAA | + |
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Preference number: 5 (lower is better) Translates to: PWVSEAGCCRRCRRR*CGRRRRASGMCPRE Trigger: TTCGCGGGGACACATTCCGGACGCGCGGCGGCGGCGGCCGCAGCAGCGGCGGCGGCAGCGGCGGCAGCATCCAGCTTCGCTTACCCAGGG 77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS GCA 90 bp | GCGCTCAGAGGTCCCTGGGTAAGCGAAGCTGGATGCTGCCGCCGCTaGCGCCGCCGCTGCTGCGGCCGCCGCCGCCGCGCGTCCGGAATG | + |
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Preference number: 5 (lower is better) Translates to: ALRGPWVSEAGCCRR*RRRCCGRRRRASGM Trigger: CATTCCGGACGCGCGGCGGCGGCGGCCGCAGCAGCGGCGGCGGCAGCGGCGGCAGCATCCAGCTTCGCTTACCCAGGGACCTCTGAGCGC 77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS GCA 90 bp | AGAGCCTGTGCGCTCAGAGGTCCCTGGGTAAGCGAAGCTGGATGCTaGCGCCGCTGCCGCCGCCGCTGCTGCGGCCGCCGCCGCCGCGCG | + |
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Preference number: 5 (lower is better) Translates to: RACALRGPWVSEAGC*RRCRRRCCGRRRRA Trigger: CGCGCGGCGGCGGCGGCCGCAGCAGCGGCGGCGGCAGCGGCGGCAGCATCCAGCTTCGCTTACCCAGGGACCTCTGAGCGCACAGGCTCT 77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS GCA 90 bp | CGAAGAGCCTGTGCGCTCAGAGGTCCCTGGGTAAGCGAAGCTGGATaGTGCCGCCGCTGCCGCCGCCGCTGCTGCGGCCGCCGCCGCCGC | + |
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Preference number: 5 (lower is better) Translates to: RRACALRGPWVSEAG*CRRCRRRCCGRRRR Trigger: GCGGCGGCGGCGGCCGCAGCAGCGGCGGCGGCAGCGGCGGCAGCATCCAGCTTCGCTTACCCAGGGACCTCTGAGCGCACAGGCTCTTCG 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS CCA 90 bp | ACGACGAAGAGCCTGTGCGCTCAGAGGTCCCTGGGTAAGCGAAGCTaGATGCTGCCGCCGCTGCCGCCGCCGCTGCTGCGGCCGCCGCCG | + |
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Preference number: 5 (lower is better) Translates to: TTKSLCAQRSLGKRS*MLPPLPPPLLRPPP Trigger: CGGCGGCGGCCGCAGCAGCGGCGGCGGCAGCGGCGGCAGCATCCAGCTTCGCTTACCCAGGGACCTCTGAGCGCACAGGCTCTTCGTCGT 73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS CCA 90 bp | GCGGTGCTGCAGCGGTCGCGGCGGCCGCTGGCGCGGGACACTCTTTaGCCACAGGAGCCTCGGGGCGAGTGGCGATCACAGCCGAGGATG | + |
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Preference number: 5 (lower is better) Translates to: AVLQRSRRPLARDTL*PQEPRGEWRSQPRM Trigger: CATCCTCGGCTGTGATCGCCACTCGCCCCGAGGCTCCTGTGGCCAAAGAGTGTCCCGCGCCAGCGGCCGCCGCGACCGCTGCAGCACCGC 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS CCA 90 bp | CCGCTGGCGCGGGACACTCTTTGGCCACAGGAGCCTCGGGGCGAGTaGCGATCACAGCCGAGGATGACGACGACGACGAAGAGCCTGTGC | + |
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Preference number: 5 (lower is better) Translates to: PLARDTLWPQEPRGE*RSQPRMTTTTKSLC Trigger: GCACAGGCTCTTCGTCGTCGTCGTCATCCTCGGCTGTGATCGCCACTCGCCCCGAGGCTCCTGTGGCCAAAGAGTGTCCCGCGCCAGCGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS GCA 90 bp | GCTGTAAGCCTACGCCGTGCGACATGCGGCAGCTGTAGTAACCGTTaGCGAAGTGGTAGCCATAGCCCAGCGCGGGAGCGCCCGGCGGTG | + |
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Preference number: 5 (lower is better) Translates to: AVSLRRATCGSCSNR*RSGSHSPARERPAV Trigger: CACCGCCGGGCGCTCCCGCGCTGGGCTATGGCTACCACTTCGGCAACGGTTACTACAGCTGCCGCATGTCGCACGGCGTAGGCTTACAGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS TCA 90 bp | TTTGGCCACAGGAGCCTCGGGGCGAGTGGCGATCACAGCCGAGGATaGCGACGACGACGAAGAGCCTGTGCGCTCAGAGGTCCCTGGGTA | + |
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Preference number: 5 (lower is better) Translates to: FGHRSLGASGDHSRG*RRRRRACALRGPWV Trigger: TACCCAGGGACCTCTGAGCGCACAGGCTCTTCGTCGTCGTCGTCATCCTCGGCTGTGATCGCCACTCGCCCCGAGGCTCCTGTGGCCAAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS GCA 90 bp | GAGTGGCGATCACAGCCGAGGATGACGACGACGACGAAGAGCCTGTaGGCTCAGAGGTCCCTGGGTAAGCGAAGCTGGATGCTGCCGCCG | + |
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Preference number: 5 (lower is better) Translates to: EWRSQPRMTTTTKSL*AQRSLGKRSWMLPP Trigger: CGGCGGCAGCATCCAGCTTCGCTTACCCAGGGACCTCTGAGCGCACAGGCTCTTCGTCGTCGTCGTCATCCTCGGCTGTGATCGCCACTC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS GCA 90 bp | AGGACACTTCCTTGGCTCTTGCGGGCACCTCGTTGGTCGGTACGCTaGTGCTCGCCAGGCCCGACACGTCCATGTACTTCTCCACCGGGA | + |
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Preference number: 5 (lower is better) Translates to: RTLPWLLRAPRWSVR*CSPGPTRPCTSPPG Trigger: TCCCGGTGGAGAAGTACATGGACGTGTCGGGCCTGGCGAGCAGCAGCGTACCGACCAACGAGGTGCCCGCAAGAGCCAAGGAAGTGTCCT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS TCA 90 bp | ACTTCTCCACCGGGAAACCTCCGAGAGAAGCGTGCGGGGACGACTTaGGAGCGTTCTGCTGTAAGCCTACGCCGTGCGACATGCGGCAGC | + |
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Preference number: 5 (lower is better) Translates to: TSPPGNLREKRAGTT*ERSAVSLRRATCGS Trigger: GCTGCCGCATGTCGCACGGCGTAGGCTTACAGCAGAACGCTCTCAAGTCGTCCCCGCACGCTTCTCTCGGAGGTTTCCCGGTGGAGAAGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS GCA 90 bp | ACACTTCCTTGGCTCTTGCGGGCACCTCGTTGGTCGGTACGCTGCTaGTCGCCAGGCCCGACACGTCCATGTACTTCTCCACCGGGAAAC | + |
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Preference number: 5 (lower is better) Translates to: TLPWLLRAPRWSVRC*SPGPTRPCTSPPGN Trigger: GTTTCCCGGTGGAGAAGTACATGGACGTGTCGGGCCTGGCGAGCAGCAGCGTACCGACCAACGAGGTGCCCGCAAGAGCCAAGGAAGTGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS CCA 90 bp | AGCCCTGGTAGAAGGACACTTCCTTGGCTCTTGCGGGCACCTCGTTaGTCGGTACGCTGCTGCTCGCCAGGCCCGACACGTCCATGTACT | + |
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Preference number: 5 (lower is better) Translates to: SPGRRTLPWLLRAPR*SVRCCSPGPTRPCT Trigger: AGTACATGGACGTGTCGGGCCTGGCGAGCAGCAGCGTACCGACCAACGAGGTGCCCGCAAGAGCCAAGGAAGTGTCCTTCTACCAGGGCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS GCA 90 bp | ATAGGGACTTGTGTAGCCCTGGTAGAAGGACACTTCCTTGGCTCTTaGGGGCACCTCGTTGGTCGGTACGCTGCTGCTCGCCAGGCCCGA | + |
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Preference number: 5 (lower is better) Translates to: IGTCVALVEGHFLGS*GHLVGRYAAARQAR Trigger: TCGGGCCTGGCGAGCAGCAGCGTACCGACCAACGAGGTGCCCGCAAGAGCCAAGGAAGTGTCCTTCTACCAGGGCTACACAAGTCCCTAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS CCA 90 bp | GGCTGTTCCACCCGTTGGCTAGCGTCCAGGACTGGTAGCCCTCCATaGAGATGTATGCCTCGTGCCGAGGTTCCCCGGATCCAAAAGTGG | + |
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Preference number: 5 (lower is better) Translates to: GCSTRWLASRTGSPP*RCMPRAEVPRIQKW Trigger: CCACTTTTGGATCCGGGGAACCTCGGCACGAGGCATACATCTCCATGGAGGGCTACCAGTCCTGGACGCTAGCCAACGGGTGGAACAGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS GCA 90 bp | GACACGTCCATGTACTTCTCCACCGGGAAACCTCCGAGAGAAGCGTaGGGGGACGACTTGAGAGCGTTCTGCTGTAAGCCTACGCCGTGC | + |
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Preference number: 5 (lower is better) Translates to: DTSMYFSTGKPPREA*GDDLRAFCCKPTPC Trigger: GCACGGCGTAGGCTTACAGCAGAACGCTCTCAAGTCGTCCCCGCACGCTTCTCTCGGAGGTTTCCCGGTGGAGAAGTACATGGACGTGTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS CCA 90 bp | CGTGCTGATAGGGACTTGTGTAGCCCTGGTAGAAGGACACTTCCTTaGCTCTTGCGGGCACCTCGTTGGTCGGTACGCTGCTGCTCGCCA | + |
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Preference number: 5 (lower is better) Translates to: RADRDLCSPGRRTLP*LLRAPRWSVRCCSP Trigger: TGGCGAGCAGCAGCGTACCGACCAACGAGGTGCCCGCAAGAGCCAAGGAAGTGTCCTTCTACCAGGGCTACACAAGTCCCTATCAGCACG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS-3UTR CAA 90 bp | AGGAGGTGGACAGAAATGGAGAACAGAACATGGAGGTTTCAGAGACCAGAACTGGGCGCGGGACACTCTTaGGCCACAGGAGCCTCGGGG | + |
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Preference number: 5 (lower is better) Translates to: RRWTEMENRTWRFQRPELGAGHS*ATGASG Trigger: CCCCGAGGCTCCTGTGGCCAAAGAGTGTCCCGCGCC...CAGTTCTGGTCTCTGAAACCTCCATGTTCTGTTCTCCATTTCTGTCCACCTCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS-3UTR CAA 90 bp | TCTTCACTGAGCTCTGGACAGAAGTTCCCACCCATGGCCACATTGGCTGAGTCTTGGCTGTTCCACCCGTaGGCTAGCGTCCAGGACTGG | + |
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Preference number: 5 (lower is better) Translates to: SSLSSGQKFPPMATLAESWLFHP*ASVQDW Trigger: CCAGTCCTGGACGCTAGCCAACGGGTGGAACAGCCA...AGACTCAGCCAATGTGGCCATGGGTGGGAACTTCTGTCCAGAGCTCAGTGAAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS CCA 90 bp | CCATGGAGATGTATGCCTCGTGCCGAGGTTCCCCGGATCCAAAAGTaGACACCATGTCGATGTAGCCAGGCACGTGCTGATAGGGACTTG | + |
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Preference number: 5 (lower is better) Translates to: PWRCMPRAEVPRIQK*TPCRCSQARADRDL Trigger: CAAGTCCCTATCAGCACGTGCCTGGCTACATCGACATGGTGTCCACTTTTGGATCCGGGGAACCTCGGCACGAGGCATACATCTCCATGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS-3UTR CAA 90 bp | AGTTCCCACCCATGGCCACATTGGCTGAGTCTCTTTCCAAGGATTGAGGAGATGGCGTGCGGGGACGACTaGAGAGCGTTCTGCTGTAAG | + |
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Preference number: 5 (lower is better) Translates to: SSHPWPHWLSLFPRIEEMACGDD*RAFCCK Trigger: CTTACAGCAGAACGCTCTCAAGTCGTCCCCGCACGC...CATCTCCTCAATCCTTGGAAAGAGACTCAGCCAATGTGGCCATGGGTGGGAACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS-3UTR CAA 90 bp | GCTGCTTTTAAAGTCATCACGTGCCTTCAACCTCCAAGTTTCAGACTCTCCCAGCTTGCGGGCACCTCGTaGGTCGGTACGCTGCTGCTC | + |
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Preference number: 5 (lower is better) Translates to: AAFKVITCLQPPSFRLSQLAGTS*VGTLLL Trigger: GAGCAGCAGCGTACCGACCAACGAGGTGCCCGCAAG...CTGGGAGAGTCTGAAACTTGGAGGTTGAAGGCACGTGATGACTTTAAAAGCAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS-3UTR CAA 90 bp | GCTGCTTTTAAAGTCATCACGTGCCTTCAACCTCCAAGTTTCAGACTCTCCCAGCGTGCTGATAGGGACTaGTGTAGCCCTGGTAGAAGG | + |
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Preference number: 5 (lower is better) Translates to: AAFKVITCLQPPSFRLSQRADRD*CSPGRR Trigger: CCTTCTACCAGGGCTACACAAGTCCCTATCAGCACG...CTGGGAGAGTCTGAAACTTGGAGGTTGAAGGCACGTGATGACTTTAAAAGCAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS-3UTR CAA 90 bp | AGGAGGTGGACAGAAATGGAGAACAGAACATGGAGGTTTCAGAGACCAGAACTGGAGATCCGCCGCCGCTaGTCCTTGTTAATGAACTTG | + |
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Preference number: 5 (lower is better) Translates to: RRWTEMENRTWRFQRPELEIRRR*SLLMNL Trigger: CAAGTTCATTAACAAGGACAAGCGGCGGCGGATCTC...CAGTTCTGGTCTCTGAAACCTCCATGTTCTGTTCTCCATTTCTGTCCACCTCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS-3UTR CAA 90 bp | GGAGAAATAAAGGCATCCACTAGGAATGCTGTTTTCAGGTTCAAAAATCACAGCCAGGAGACAGTGTCTTaGAGCTTGGAGACGATTTTC | + |
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Preference number: 5 (lower is better) Translates to: GEIKASTRNAVFRFKNHSQETVS*SLETIF Trigger: GAAAATCGTCTCCAAGCTCAAAGACACTGTCTCCTG...GCTGTGATTTTTGAACCTGAAAACAGCATTCCTAGTGGATGCCTTTATTTCTCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS-3UTR CAA 90 bp | ATAGAATTACAAAGTCGGATTGGGCAGCAAAAAGTTTTAGAACCAGATAAAGGTTTGGAGACGATTTTCTaGTCCTTCACCCTTCGATTC | + |
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Preference number: 5 (lower is better) Translates to: IELQSRIGQQKVLEPDKGLETIF*SFTLRF Trigger: GAATCGAAGGGTGAAGGACAAGAAAATCGTCTCCAA...ACCTTTATCTGGTTCTAAAACTTTTTGCTGCCCAATCCGACTTTGTAATTCTAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS-3UTR CAA 90 bp | AGTATTTTAATAGCTGCATGTAGAGTTGGAGAAATAAAGGCATCCACTAGGAATACAGTGTCTTTGAGCTaGGAGACGATTTTCTTGTCC | + |
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Preference number: 5 (lower is better) Translates to: SILIAACRVGEIKASTRNTVSLS*ETIFLS Trigger: GGACAAGAAAATCGTCTCCAAGCTCAAAGACACTGT...ATTCCTAGTGGATGCCTTTATTTCTCCAACTCTACATGCAGCTATTAAAATACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS-3UTR CAA 90 bp | TTAAATGCTCGAAGCACTGCTCACACACACTGTATCTACAAAAATAATCTTTCAAAACCAAATGGTTACTaGTCTCTCCGAAAGGTTCGT | + |
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Preference number: 5 (lower is better) Translates to: LNARSTAHTHCIYKNNLSKPNGY*SLRKVR Trigger: ACGAACCTTTCGGAGAGACAAGTAACCATTTGGTTT...TGAAAGATTATTTTTGTAGATACAGTGTGTGTGAGCAGTGCTTCGAGCATTTAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS CCA 72 bp | CAGCGGTCGCGGCGGCCGCTGGCGCGGGACACTCTTTaGCCACAGGAGCCTCGGGGCGAGTGGCGATCACAG | + |
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Preference number: 6 (lower is better) Translates to: QRSRRPLARDTL*PQEPRGEWRSQ Trigger: CTGTGATCGCCACTCGCCCCGAGGCTCCTGTGGCCAAAGAGTGTCCCGCGCCAGCGGCCGCCGCGACCGCTG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS CAA 72 bp | GCAGCGGTCGCGGCGGCCGCTGGCGCGGGACACTCTTaGGCCACAGGAGCCTCGGGGCGAGTGGCGATCACA | + |
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Preference number: 6 (lower is better) Translates to: AAVAAAAGAGHS*ATGASGRVAIT Trigger: TGTGATCGCCACTCGCCCCGAGGCTCCTGTGGCCAAAGAGTGTCCCGCGCCAGCGGCCGCCGCGACCGCTGC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS CAA 90 bp | GGCGGTGCTGCAGCGGTCGCGGCGGCCGCTGGCGCGGGACACTCTTaGGCCACAGGAGCCTCGGGGCGAGTGGCGATCACAGCCGAGGAT | + |
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Preference number: 6 (lower is better) Translates to: GGAAAVAAAAGAGHS*ATGASGRVAITAED Trigger: ATCCTCGGCTGTGATCGCCACTCGCCCCGAGGCTCCTGTGGCCAAAGAGTGTCCCGCGCCAGCGGCCGCCGCGACCGCTGCAGCACCGCC 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS TCA 72 bp | AGGAGCCTCGGGGCGAGTGGCGATCACAGCCGAGGATaGCGACGACGACGAAGAGCCTGTGCGCTCAGAGGT | + |
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Preference number: 6 (lower is better) Translates to: RSLGASGDHSRG*RRRRRACALRG Trigger: ACCTCTGAGCGCACAGGCTCTTCGTCGTCGTCGTCATCCTCGGCTGTGATCGCCACTCGCCCCGAGGCTCCT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS GCA 72 bp | CTACGCCGTGCGACATGCGGCAGCTGTAGTAACCGTTaGCGAAGTGGTAGCCATAGCCCAGCGCGGGAGCGC | + |
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Preference number: 6 (lower is better) Translates to: LRRATCGSCSNR*RSGSHSPARER Trigger: GCGCTCCCGCGCTGGGCTATGGCTACCACTTCGGCAACGGTTACTACAGCTGCCGCATGTCGCACGGCGTAG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS CCA 72 bp | CGGGACACTCTTTGGCCACAGGAGCCTCGGGGCGAGTaGCGATCACAGCCGAGGATGACGACGACGACGAAG | + |
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Preference number: 6 (lower is better) Translates to: RDTLWPQEPRGE*RSQPRMTTTTK Trigger: CTTCGTCGTCGTCGTCATCCTCGGCTGTGATCGCCACTCGCCCCGAGGCTCCTGTGGCCAAAGAGTGTCCCG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS GCA 72 bp | CCGAGAGAAGCGTGCGGGGACGACTTGAGAGCGTTCTaGTGTAAGCCTACGCCGTGCGACATGCGGCAGCTG | + |
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Preference number: 6 (lower is better) Translates to: PREACGDDLRAF*CKPTPCDMRQL Trigger: CAGCTGCCGCATGTCGCACGGCGTAGGCTTACAGCAGAACGCTCTCAAGTCGTCCCCGCACGCTTCTCTCGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS GCA 72 bp | TGGCTCTTGCGGGCACCTCGTTGGTCGGTACGCTGCTaGTCGCCAGGCCCGACACGTCCATGTACTTCTCCA | + |
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Preference number: 6 (lower is better) Translates to: WLLRAPRWSVRC*SPGPTRPCTSP Trigger: TGGAGAAGTACATGGACGTGTCGGGCCTGGCGAGCAGCAGCGTACCGACCAACGAGGTGCCCGCAAGAGCCA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS GCA 72 bp | CCTTGGCTCTTGCGGGCACCTCGTTGGTCGGTACGCTaGTGCTCGCCAGGCCCGACACGTCCATGTACTTCT | + |
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Preference number: 6 (lower is better) Translates to: PWLLRAPRWSVR*CSPGPTRPCTS Trigger: AGAAGTACATGGACGTGTCGGGCCTGGCGAGCAGCAGCGTACCGACCAACGAGGTGCCCGCAAGAGCCAAGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS CCA 72 bp | AGAAGGACACTTCCTTGGCTCTTGCGGGCACCTCGTTaGTCGGTACGCTGCTGCTCGCCAGGCCCGACACGT | + |
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Preference number: 6 (lower is better) Translates to: RRTLPWLLRAPR*SVRCCSPGPTR Trigger: ACGTGTCGGGCCTGGCGAGCAGCAGCGTACCGACCAACGAGGTGCCCGCAAGAGCCAAGGAAGTGTCCTTCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS CAA 90 bp | GATAGGGACTTGTGTAGCCCTGGTAGAAGGACACTTCCTTGGCTCTaGCGGGCACCTCGTTGGTCGGTACGCTGCTGCTCGCCAGGCCCG | + |
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Preference number: 6 (lower is better) Translates to: DRDLCSPGRRTLPWL*RAPRWSVRCCSPGP Trigger: CGGGCCTGGCGAGCAGCAGCGTACCGACCAACGAGGTGCCCGCAAGAGCCAAGGAAGTGTCCTTCTACCAGGGCTACACAAGTCCCTATC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS TCA 72 bp | CCGGGAAACCTCCGAGAGAAGCGTGCGGGGACGACTTaGGAGCGTTCTGCTGTAAGCCTACGCCGTGCGACA | + |
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Preference number: 6 (lower is better) Translates to: PGNLREKRAGTT*ERSAVSLRRAT Trigger: TGTCGCACGGCGTAGGCTTACAGCAGAACGCTCTCAAGTCGTCCCCGCACGCTTCTCTCGGAGGTTTCCCGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS CCA 72 bp | ACCCGTTGGCTAGCGTCCAGGACTGGTAGCCCTCCATaGAGATGTATGCCTCGTGCCGAGGTTCCCCGGATC | + |
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Preference number: 6 (lower is better) Translates to: TRWLASRTGSPP*RCMPRAEVPRI Trigger: GATCCGGGGAACCTCGGCACGAGGCATACATCTCCATGGAGGGCTACCAGTCCTGGACGCTAGCCAACGGGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS CAA 72 bp | ACCGGGAAACCTCCGAGAGAAGCGTGCGGGGACGACTaGAGAGCGTTCTGCTGTAAGCCTACGCCGTGCGAC | + |
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Preference number: 6 (lower is better) Translates to: TGKPPREACGDD*RAFCCKPTPCD Trigger: GTCGCACGGCGTAGGCTTACAGCAGAACGCTCTCAAGTCGTCCCCGCACGCTTCTCTCGGAGGTTTCCCGGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS CAA 90 bp | TACTTCTCCACCGGGAAACCTCCGAGAGAAGCGTGCGGGGACGACTaGAGAGCGTTCTGCTGTAAGCCTACGCCGTGCGACATGCGGCAG | + |
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Preference number: 6 (lower is better) Translates to: YFSTGKPPREACGDD*RAFCCKPTPCDMRQ Trigger: CTGCCGCATGTCGCACGGCGTAGGCTTACAGCAGAACGCTCTCAAGTCGTCCCCGCACGCTTCTCTCGGAGGTTTCCCGGTGGAGAAGTA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS GCA 72 bp | TCACAGCCGAGGATGACGACGACGACGAAGAGCCTGTaGGCTCAGAGGTCCCTGGGTAAGCGAAGCTGGATG | + |
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Preference number: 6 (lower is better) Translates to: SQPRMTTTTKSL*AQRSLGKRSWM Trigger: CATCCAGCTTCGCTTACCCAGGGACCTCTGAGCGCACAGGCTCTTCGTCGTCGTCGTCATCCTCGGCTGTGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS GCA 72 bp | TGTGTAGCCCTGGTAGAAGGACACTTCCTTGGCTCTTaGGGGCACCTCGTTGGTCGGTACGCTGCTGCTCGC | + |
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Preference number: 6 (lower is better) Translates to: CVALVEGHFLGS*GHLVGRYAAAR Trigger: GCGAGCAGCAGCGTACCGACCAACGAGGTGCCCGCAAGAGCCAAGGAAGTGTCCTTCTACCAGGGCTACACA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS CCA 72 bp | AGGGACTTGTGTAGCCCTGGTAGAAGGACACTTCCTTaGCTCTTGCGGGCACCTCGTTGGTCGGTACGCTGC | + |
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Preference number: 6 (lower is better) Translates to: RDLCSPGRRTLP*LLRAPRWSVRC Trigger: GCAGCGTACCGACCAACGAGGTGCCCGCAAGAGCCAAGGAAGTGTCCTTCTACCAGGGCTACACAAGTCCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS GCA 72 bp | ATGTACTTCTCCACCGGGAAACCTCCGAGAGAAGCGTaGGGGGACGACTTGAGAGCGTTCTGCTGTAAGCCT | + |
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Preference number: 6 (lower is better) Translates to: MYFSTGKPPREA*GDDLRAFCCKP Trigger: AGGCTTACAGCAGAACGCTCTCAAGTCGTCCCCGCACGCTTCTCTCGGAGGTTTCCCGGTGGAGAAGTACAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS CAA 90 bp | AAGTGGACACCATGTCGATGTAGCCAGGCACGTGCTGATAGGGACTaGTGTAGCCCTGGTAGAAGGACACTTCCTTGGCTCTTGCGGGCA | + |
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Preference number: 6 (lower is better) Translates to: KWTPCRCSQARADRD*CSPGRRTLPWLLRA Trigger: TGCCCGCAAGAGCCAAGGAAGTGTCCTTCTACCAGGGCTACACAAGTCCCTATCAGCACGTGCCTGGCTACATCGACATGGTGTCCACTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS CAA 72 bp | CCATGTCGATGTAGCCAGGCACGTGCTGATAGGGACTaGTGTAGCCCTGGTAGAAGGACACTTCCTTGGCTC | + |
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Preference number: 6 (lower is better) Translates to: PCRCSQARADRD*CSPGRRTLPWL Trigger: GAGCCAAGGAAGTGTCCTTCTACCAGGGCTACACAAGTCCCTATCAGCACGTGCCTGGCTACATCGACATGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS TCA 72 bp | AATGGTTACTTGTCTCTCCGAAAGGTTCGTGGCAGCTaGGATCCGCCGCCGCTTGTCCTTGTTAATGAACTT | + |
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Preference number: 6 (lower is better) Translates to: NGYLSLRKVRGS*DPPPLVLVNEL Trigger: AAGTTCATTAACAAGGACAAGCGGCGGCGGATCTCAGCTGCCACGAACCTTTCGGAGAGACAAGTAACCATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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| CDS CAA 90 bp | TTCGTGGCAGCTGAGATCCGCCGCCGCTTGTCCTTGTTAATGAACTaGTTAATGGCATACTCATTCTCCAGTTCTTTGAGCTGCAGTTTG | + |
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Preference number: 6 (lower is better) Translates to: FVAAEIRRRLSLLMN*LMAYSFSSSLSCSL Trigger: CAAACTGCAGCTCAAAGAACTGGAGAATGAGTATGCCATTAACAAGTTCATTAACAAGGACAAGCGGCGGCGGATCTCAGCTGCCACGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001872.5 |
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