Pregenerated sensors for HOXD12 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001823Ensembl transcript IDs: ENSMUST00000001878.6
Found 79 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ACTGAGCCGAAGGGCGCCCAGGACCAGAGGAGTGGGAGGGAAATCTaGAGCCCCAACACCTCCTCCACAGCCAGGCCTTGGTCCAAAAGG | + |
|
Preference number: 1 (lower is better) Translates to: TEPKGAQDQRSGREI*SPNTSSTARPWSKR Trigger: CCTTTTGGACCAAGGCCTGGCTGTGGAGGAGGTGTTGGGGCTGCAGATTTCCCTCCCACTCCTCTGGTCCTGGGCGCCCTTCGGCTCAGT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| 3UTR TCA 90 bp | ACTGGCCTCATCTCCAAATCTCCTCCTGGTTCCTCAGCTACAGACTaGGCCGAAGGGCGCCCAGGACCAGAGGAGTGGGAGGGAAATCTG | + |
|
Preference number: 1 (lower is better) Translates to: TGLISKSPPGSSATD*AEGRPGPEEWEGNL Trigger: CAGATTTCCCTCCCACTCCTCTGGTCCTGGGCGCCCTTCGGCTCAGTCTGTAGCTGAGGAACCAGGAGGAGATTTGGAGATGAGGCCAGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| 3UTR CCA 90 bp | AGCCTCAAAACAGGCCAGCAGCTCCCCTCACCCATAGCTCAGTTCTaGGGATCTAGTTACAGAGTGCTTGGCCTTGGCTCAGGGATAGGT | + |
|
Preference number: 1 (lower is better) Translates to: SLKTGQQLPSPIAQF*GSSYRVLGLGSGIG Trigger: ACCTATCCCTGAGCCAAGGCCAAGCACTCTGTAACTAGATCCCCAGAACTGAGCTATGGGTGAGGGGAGCTGCTGGCCTGTTTTGAGGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| 3UTR TCA 90 bp | AGATTGCAATTCCCAAACACCTCTCAGGAGGGTCCCAAAGAGAGCTaGAAGCGAAGGGGGCTCCACTGGCCTCATCTCCAAATCTCCTCC | + |
|
Preference number: 1 (lower is better) Translates to: RLQFPNTSQEGPKES*KRRGLHWPHLQISS Trigger: GGAGGAGATTTGGAGATGAGGCCAGTGGAGCCCCCTTCGCTTTCAGCTCTCTTTGGGACCCTCCTGAGAGGTGTTTGGGAATTGCAATCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| 3UTR CCA 90 bp | CGAGGCTCAAAGGTCCTTGTGAGATGCCCTTCGAGGTCCAGTTCCTaGAGACCTTCTCTAAAGGAAAGCCATTGGACTTGGGGAAGGAAT | + |
|
Preference number: 1 (lower is better) Translates to: RGSKVLVRCPSRSSS*RPSLKESHWTWGRN Trigger: ATTCCTTCCCCAAGTCCAATGGCTTTCCTTTAGAGAAGGTCTCCAGGAACTGGACCTCGAAGGGCATCTCACAAGGACCTTTGAGCCTCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| 3UTR TCA 90 bp | CTTGGCCTTGGCTCAGGGATAGGTGAGGCTGGAGCAGGGGAATTATaGCAGTCTAGAGACCATACTTTGTTTTGGAGTCCCAGTTTCTCT | + |
|
Preference number: 1 (lower is better) Translates to: LGLGSGIGEAGAGEL*QSRDHTLFWSPSFS Trigger: AGAGAAACTGGGACTCCAAAACAAAGTATGGTCTCTAGACTGTCATAATTCCCCTGCTCCAGCCTCACCTATCCCTGAGCCAAGGCCAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| 3UTR CCA 90 bp | CCTTCGAGGTCCAGTTCCTGGAGACCTTCTCTAAAGGAAAGCCATTaGACTTGGGGAAGGAATCATGAGCCTTTGGGATGTTGTGCATCT | + |
|
Preference number: 1 (lower is better) Translates to: PSRSSSWRPSLKESH*TWGRNHEPLGCCAS Trigger: AGATGCACAACATCCCAAAGGCTCATGATTCCTTCCCCAAGTCCAATGGCTTTCCTTTAGAGAAGGTCTCCAGGAACTGGACCTCGAAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| 3UTR TCA 90 bp | GCTGGTTTTCTGTCCTTCAAGAGCAGCAACTACAGTCTGAGAATCTaGGAGGTTTCTTCTCCCACCCTTCAGACTCCTCAAGGAGGCATT | + |
|
Preference number: 1 (lower is better) Translates to: AGFLSFKSSNYSLRI*EVSSPTLQTPQGGI Trigger: AATGCCTCCTTGAGGAGTCTGAAGGGTGGGAGAAGAAACCTCTCAGATTCTCAGACTGTAGTTGCTGCTCTTGAAGGACAGAAAACCAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| 3UTR GCA 90 bp | GTGACCCCCAGACACCATGCTGAATGTTTAAAGCCAGTGTTAGATTaGAATTCCCAAACACCTCTCAGGAGGGTCCCAAAGAGAGCTGAA | + |
|
Preference number: 1 (lower is better) Translates to: VTPRHHAECLKPVLD*NSQTPLRRVPKRAE Trigger: TTCAGCTCTCTTTGGGACCCTCCTGAGAGGTGTTTGGGAATTGCAATCTAACACTGGCTTTAAACATTCAGCATGGTGTCTGGGGGTCAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| 3UTR TCA 90 bp | AGAGACCATACTTTGTTTTGGAGTCCCAGTTTCTCTCCCTGTCTCTaGGAAGGAGATCTTCCAGCCTGTTTTACTCAGCAGGAGAACCTT | + |
|
Preference number: 1 (lower is better) Translates to: RDHTLFWSPSFSPCL*EGDLPACFTQQENL Trigger: AAGGTTCTCCTGCTGAGTAAAACAGGCTGGAAGATCTCCTTCTCAGAGACAGGGAGAGAAACTGGGACTCCAAAACAAAGTATGGTCTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| 3UTR-3UTR CCA 90 bp | CACCTCTCAGGAGGGTCCCAAAGAGAGCTGAAAGCGAAGGGGGCTCCACTGGCCCCAAAAGGGCAGGCTTaGCAAGGCCTCAGGCCCCCG | + |
|
Preference number: 2 (lower is better) Translates to: HLSGGSQRELKAKGAPLAPKGQA*QGLRPP Trigger: CGGGGGCCTGAGGCCTTGCCAAGCCTGCCCTTTTGG...GGCCAGTGGAGCCCCCTTCGCTTTCAGCTCTCTTTGGGACCCTCCTGAGAGGTG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| 3UTR-3UTR CCA 90 bp | GTGCAGCCAAGCCTCAAAACAGGCCAGCAGCTCCCCTCACCCATAGCTCAGTTCCCAGGACCAGAGGAGTaGGAGGGAAATCTGCAGCCC | + |
|
Preference number: 2 (lower is better) Translates to: VQPSLKTGQQLPSPIAQFPGPEE*EGNLQP Trigger: GGGCTGCAGATTTCCCTCCCACTCCTCTGGTCCTGG...GAACTGAGCTATGGGTGAGGGGAGCTGCTGGCCTGTTTTGAGGCTTGGCTGCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| 3UTR-3UTR CCA 90 bp | TTCTTCCCTGTGCAGCCAAGCCTCAAAACAGGCCAGCAGCTCCCCTCACCCATACTCCAAATCTCCTCCTaGTTCCTCAGCTACAGACTG | + |
|
Preference number: 2 (lower is better) Translates to: FFPVQPSLKTGQQLPSPILQISS*FLSYRL Trigger: CAGTCTGTAGCTGAGGAACCAGGAGGAGATTTGGAG...TATGGGTGAGGGGAGCTGCTGGCCTGTTTTGAGGCTTGGCTGCACAGGGAAGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| 3UTR-3UTR CCA 90 bp | CCCTTCGAGGTCCAGTTCCTGGAGACCTTCTCTAAAGGAAAGCCATTGGACTTGCGAAGGGGGCTCCACTaGCCTCATCTCCAAATCTCC | + |
|
Preference number: 2 (lower is better) Translates to: PFEVQFLETFSKGKPLDLRRGLH*PHLQIS Trigger: GGAGATTTGGAGATGAGGCCAGTGGAGCCCCCTTCG...CAAGTCCAATGGCTTTCCTTTAGAGAAGGTCTCCAGGAACTGGACCTCGAAGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| 3UTR-3UTR CCA 90 bp | GCCATTGGACTTGGGGAAGGAATCATGAGCCTTTGGGATGTTGTGCATCTTGCTTCCACAGCCAGGCCTTaGTCCAAAAGGGCAGGCTTG | + |
|
Preference number: 2 (lower is better) Translates to: AIGLGEGIMSLWDVVHLASTARP*SKRAGL Trigger: CAAGCCTGCCCTTTTGGACCAAGGCCTGGCTGTGGA...AGCAAGATGCACAACATCCCAAAGGCTCATGATTCCTTCCCCAAGTCCAATGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| 3UTR-3UTR TCA 90 bp | GGACTTGGGGAAGGAATCATGAGCCTTTGGGATGTTGTGCATCTTGCTAAAGGTATAGACAAGGACAGGTaGCCCCCAGACACCATGCTG | + |
|
Preference number: 2 (lower is better) Translates to: GLGEGIMSLWDVVHLAKGIDKDR*PPDTML Trigger: CAGCATGGTGTCTGGGGGTCACCTGTCCTTGTCTAT...ACCTTTAGCAAGATGCACAACATCCCAAAGGCTCATGATTCCTTCCCCAAGTCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| 3UTR-3UTR GCA 90 bp | CCCTTCGAGGTCCAGTTCCTGGAGACCTTCTCTAAAGGAAAGCCATTGGACTTGACAAAGGGCTTCTGCTaGGAAGGGGCTAGAGTTATC | + |
|
Preference number: 2 (lower is better) Translates to: PFEVQFLETFSKGKPLDLTKGFC*EGARVI Trigger: GATAACTCTAGCCCCTTCGCAGCAGAAGCCCTTTGT...CAAGTCCAATGGCTTTCCTTTAGAGAAGGTCTCCAGGAACTGGACCTCGAAGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| 3UTR-3UTR GCA 90 bp | ATGGGGAAGAAGTGCTGGTTTTCTGTCCTTCAAGAGCAGCAACTACAGTCTGAGCAGGGCCTTTCTACCTaGACTTATACCCGGAGCTCT | + |
|
Preference number: 2 (lower is better) Translates to: MGKKCWFSVLQEQQLQSEQGLST*TYTRSS Trigger: AGAGCTCCGGGTATAAGTGCAGGTAGAAAGGCCCTG...CTCAGACTGTAGTTGCTGCTCTTGAAGGACAGAAAACCAGCACTTCTTCCCCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| 3UTR-3UTR CCA 90 bp | CCCTTCGAGGTCCAGTTCCTGGAGACCTTCTCTAAAGGAAAGCCATTGGACTTGCCCATAGCTCAGTTCTaGGGATCTAGTTACAGAGTG | + |
|
Preference number: 2 (lower is better) Translates to: PFEVQFLETFSKGKPLDLPIAQF*GSSYRV Trigger: CACTCTGTAACTAGATCCCCAGAACTGAGCTATGGG...CAAGTCCAATGGCTTTCCTTTAGAGAAGGTCTCCAGGAACTGGACCTCGAAGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| 3UTR-3UTR GCA 90 bp | GCCATTGGACTTGGGGAAGGAATCATGAGCCTTTGGGATGTTGTGCATCTTGCTCTTCTTTCTTCCCTGTaGAGCCAAGCCTCAAAACAG | + |
|
Preference number: 2 (lower is better) Translates to: AIGLGEGIMSLWDVVHLALLSSL*SQASKQ Trigger: CTGTTTTGAGGCTTGGCTGCACAGGGAAGAAAGAAG...AGCAAGATGCACAACATCCCAAAGGCTCATGATTCCTTCCCCAAGTCCAATGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| 3UTR-3UTR CCA 90 bp | CCCTTCGAGGTCCAGTTCCTGGAGACCTTCTCTAAAGGAAAGCCATTGGACTTGGACCATACTTTGTTTTaGAGTCCCAGTTTCTCTCCC | + |
|
Preference number: 2 (lower is better) Translates to: PFEVQFLETFSKGKPLDLDHTLF*SPSFSP Trigger: GGGAGAGAAACTGGGACTCCAAAACAAAGTATGGTC...CAAGTCCAATGGCTTTCCTTTAGAGAAGGTCTCCAGGAACTGGACCTCGAAGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| 3UTR-3UTR TCA 90 bp | GGACTTGGGGAAGGAATCATGAGCCTTTGGGATGTTGTGCATCTTGCTAAAGGTCCCCAGACACCATGCTaGATGTTTAAAGCCAGTGTT | + |
|
Preference number: 2 (lower is better) Translates to: GLGEGIMSLWDVVHLAKGPQTPC*MFKASV Trigger: AACACTGGCTTTAAACATTCAGCATGGTGTCTGGGG...ACCTTTAGCAAGATGCACAACATCCCAAAGGCTCATGATTCCTTCCCCAAGTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| 3UTR-3UTR GCA 90 bp | ATGGGGAAGAAGTGCTGGTTTTCTGTCCTTCAAGAGCAGCAACTACAGTCTGAGAAGCCAGTGTTAGATTaGAATTCCCAAACACCTCTC | + |
|
Preference number: 2 (lower is better) Translates to: MGKKCWFSVLQEQQLQSEKPVLD*NSQTPL Trigger: GAGAGGTGTTTGGGAATTGCAATCTAACACTGGCTT...CTCAGACTGTAGTTGCTGCTCTTGAAGGACAGAAAACCAGCACTTCTTCCCCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| 3UTR CCA 72 bp | AGGGGGCTCCACTGGCCTCATCTCCAAATCTCCTCCTaGTTCCTCAGCTACAGACTGAGCCGAAGGGCGCCC | + |
|
Preference number: 3 (lower is better) Translates to: RGLHWPHLQISS*FLSYRLSRRAP Trigger: GGGCGCCCTTCGGCTCAGTCTGTAGCTGAGGAACCAGGAGGAGATTTGGAGATGAGGCCAGTGGAGCCCCCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| 3UTR TCA 72 bp | ATCTCCAAATCTCCTCCTGGTTCCTCAGCTACAGACTaGGCCGAAGGGCGCCCAGGACCAGAGGAGTGGGAG | + |
|
Preference number: 3 (lower is better) Translates to: ISKSPPGSSATD*AEGRPGPEEWE Trigger: CTCCCACTCCTCTGGTCCTGGGCGCCCTTCGGCTCAGTCTGTAGCTGAGGAACCAGGAGGAGATTTGGAGAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| 3UTR TCA 72 bp | TTCCCAAACACCTCTCAGGAGGGTCCCAAAGAGAGCTaGAAGCGAAGGGGGCTCCACTGGCCTCATCTCCAA | + |
|
Preference number: 3 (lower is better) Translates to: FPNTSQEGPKES*KRRGLHWPHLQ Trigger: TTGGAGATGAGGCCAGTGGAGCCCCCTTCGCTTTCAGCTCTCTTTGGGACCCTCCTGAGAGGTGTTTGGGAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| 3UTR TCA 72 bp | CACCAGTCTCTGAGAAGAGACACCCTAGCTAAGTTCTaGTGGAGTTGGTGGGTGGTGGAGAGGATGGGGAAG | + |
|
Preference number: 3 (lower is better) Translates to: HQSLRRDTLAKF*WSWWVVERMGK Trigger: CTTCCCCATCCTCTCCACCACCCACCAACTCCATCAGAACTTAGCTAGGGTGTCTCTTCTCAGAGACTGGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| 3UTR-3UTR CAA 90 bp | GGACTTGGGGAAGGAATCATGAGCCTTTGGGATGTTGTGCATCTTGCTAAAGGTCAGGGCAGATGGGGGTaGTGGAATCAGGCCCTTTCC | + |
|
Preference number: 3 (lower is better) Translates to: GLGEGIMSLWDVVHLAKGQGRWG*WNQALS Trigger: GGAAAGGGCCTGATTCCACAACCCCCATCTGCCCTG...ACCTTTAGCAAGATGCACAACATCCCAAAGGCTCATGATTCCTTCCCCAAGTCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| 3UTR TCA 72 bp | GATCTTCCAGCCTGTTTTACTCAGCAGGAGAACCTTTaGAGCGCTGAGGTTCCAGGGTATCCTTTCCTCCCC | + |
|
Preference number: 3 (lower is better) Translates to: DLPACFTQQENL*SAEVPGYPFLP Trigger: GGGGAGGAAAGGATACCCTGGAACCTCAGCGCTTCAAAGGTTCTCCTGCTGAGTAAAACAGGCTGGAAGATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| 3UTR CCA 72 bp | AAGGTCCTTGTGAGATGCCCTTCGAGGTCCAGTTCCTaGAGACCTTCTCTAAAGGAAAGCCATTGGACTTGG | + |
|
Preference number: 3 (lower is better) Translates to: KVLVRCPSRSSS*RPSLKESHWTW Trigger: CCAAGTCCAATGGCTTTCCTTTAGAGAAGGTCTCCAGGAACTGGACCTCGAAGGGCATCTCACAAGGACCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| 3UTR-3UTR CAA 90 bp | AAACATAAACGGCAACTGTTAGCACAGGAAATAATATTTAACACACCAACCGAGTCCAAAAGGGCAGGCTaGGCAAGGCCTCAGGCCCCC | + |
|
Preference number: 3 (lower is better) Translates to: KHKRQLLAQEIIFNTPTESKRAG*ARPQAP Trigger: GGGGGCCTGAGGCCTTGCCAAGCCTGCCCTTTTGGA...CTCGGTTGGTGTGTTAAATATTATTTCCTGTGCTAACAGTTGCCGTTTATGTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| 3UTR TCA 72 bp | CTGTCCTTCAAGAGCAGCAACTACAGTCTGAGAATCTaGGAGGTTTCTTCTCCCACCCTTCAGACTCCTCAA | + |
|
Preference number: 3 (lower is better) Translates to: LSFKSSNYSLRI*EVSSPTLQTPQ Trigger: TTGAGGAGTCTGAAGGGTGGGAGAAGAAACCTCTCAGATTCTCAGACTGTAGTTGCTGCTCTTGAAGGACAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| 3UTR CCA 72 bp | TCCAGTTCCTGGAGACCTTCTCTAAAGGAAAGCCATTaGACTTGGGGAAGGAATCATGAGCCTTTGGGATGT | + |
|
Preference number: 3 (lower is better) Translates to: SSSWRPSLKESH*TWGRNHEPLGC Trigger: ACATCCCAAAGGCTCATGATTCCTTCCCCAAGTCCAATGGCTTTCCTTTAGAGAAGGTCTCCAGGAACTGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| 3UTR-3UTR CAA 90 bp | GCCATTGGACTTGGGGAAGGAATCATGAGCCTTTGGGATGTTGTGCATCTTGCTAAAGCCAGTGTTAGATaGCAATTCCCAAACACCTCT | + |
|
Preference number: 3 (lower is better) Translates to: AIGLGEGIMSLWDVVHLAKASVR*QFPNTS Trigger: AGAGGTGTTTGGGAATTGCAATCTAACACTGGCTTT...AGCAAGATGCACAACATCCCAAAGGCTCATGATTCCTTCCCCAAGTCCAATGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| 3UTR TCA 72 bp | CTGGTTTTCTGTCCTTCAAGAGCAGCAACTACAGTCTaGGAATCTGAGAGGTTTCTTCTCCCACCCTTCAGA | + |
|
Preference number: 3 (lower is better) Translates to: LVFCPSRAATTV*ESERFLLPPFR Trigger: TCTGAAGGGTGGGAGAAGAAACCTCTCAGATTCTCAGACTGTAGTTGCTGCTCTTGAAGGACAGAAAACCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| 3UTR CCA 72 bp | CTTTGGGATGTTGTGCATCTTGCTAAAGGTTGGGGGTaGGGCTTAAAGCTCAAAAGAAGAGGCAAAGATTGT | + |
|
Preference number: 3 (lower is better) Translates to: LWDVVHLAKGWG*GLKLKRRGKDC Trigger: ACAATCTTTGCCTCTTCTTTTGAGCTTTAAGCCCCACCCCCAACCTTTAGCAAGATGCACAACATCCCAAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS-3UTR CCA 90 bp | CACCTCTCAGGAGGGTCCCAAAGAGAGCTGAAAGCGAAGGGGGCTCCACTGGCCGCACAGGGGGCCCCCTaGAGCAGGGTCGCAGAGCCT | + |
|
Preference number: 4 (lower is better) Translates to: HLSGGSQRELKAKGAPLAAQGAP*SRVAEP Trigger: AGGCTCTGCGACCCTGCTCCAGGGGGCCCCCTGTGC...GGCCAGTGGAGCCCCCTTCGCTTTCAGCTCTCTTTGGGACCCTCCTGAGAGGTG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS-3UTR TCA 90 bp | CACCTCTCAGGAGGGTCCCAAAGAGAGCTGAAAGCGAAGGGGGCTCCACTGGCCCAGGCGTATAGAACTTaGCCTGGTCTTCGGGTCCGT | + |
|
Preference number: 4 (lower is better) Translates to: HLSGGSQRELKAKGAPLAQAYRT*PGLRVR Trigger: ACGGACCCGAAGACCAGGTCAAGTTCTATACGCCTG...GGCCAGTGGAGCCCCCTTCGCTTTCAGCTCTCTTTGGGACCCTCCTGAGAGGTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS-3UTR GCA 90 bp | CCCTTCGAGGTCCAGTTCCTGGAGACCTTCTCTAAAGGAAAGCCATTGGACTTGGAGGCGGTGGCAGGCTaGGCAGGGGTGCATGAGGCG | + |
|
Preference number: 4 (lower is better) Translates to: PFEVQFLETFSKGKPLDLEAVAG*AGVHEA Trigger: CGCCTCATGCACCCCTGCGCAGCCTGCCACCGCCTC...CAAGTCCAATGGCTTTCCTTTAGAGAAGGTCTCCAGGAACTGGACCTCGAAGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS-3UTR GCA 90 bp | GTGCAGCCAAGCCTCAAAACAGGCCAGCAGCTCCCCTCACCCATAGCTCAGTTCTTGGCGCCTGGAGACTaGAGGCCAATTGGCCCAGAG | + |
|
Preference number: 4 (lower is better) Translates to: VQPSLKTGQQLPSPIAQFLAPGD*RPIGPE Trigger: CTCTGGGCCAATTGGCCTGCAGTCTCCAGGCGCCAA...GAACTGAGCTATGGGTGAGGGGAGCTGCTGGCCTGTTTTGAGGCTTGGCTGCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS-3UTR TCA 90 bp | CACCTCTCAGGAGGGTCCCAAAGAGAGCTGAAAGCGAAGGGGGCTCCACTGGCCCTGCCATGTTCAAGTTaGGCGGGCCTTTGGTGTCTT | + |
|
Preference number: 4 (lower is better) Translates to: HLSGGSQRELKAKGAPLALPCSS*AGLWCL Trigger: AAGACACCAAAGGCCCGCTCAACTTGAACATGGCAG...GGCCAGTGGAGCCCCCTTCGCTTTCAGCTCTCTTTGGGACCCTCCTGAGAGGTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS-3UTR TCA 90 bp | AGCCCCGGATGTAAACATCATAGACAAGGACAGGTGACCCCCAGACACCATGCTCAGGCCGTCGGGCAGTaGAGATCGCAGGCAAGAGGC | + |
|
Preference number: 4 (lower is better) Translates to: SPGCKHHRQGQVTPRHHAQAVGQ*RSQARG Trigger: GCCTCTTGCCTGCGATCTTCACTGCCCGACGGCCTG...AGCATGGTGTCTGGGGGTCACCTGTCCTTGTCTATGATGTTTACATCCGGGGCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS-3UTR TCA 90 bp | CCCCAACACCTCCTCCACAGCCAGGCCTTGGTCCAAAAGGGCAGGCTTGGCAAGCATACTTGGTGCCTTTaGGAGCCGAATGAACCAGAC | + |
|
Preference number: 4 (lower is better) Translates to: PQHLLHSQALVQKGRLGKHTWCL*EPNEPD Trigger: GTCTGGTTCATTCGGCTCTCAAAGGCACCAAGTATG...CTTGCCAAGCCTGCCCTTTTGGACCAAGGCCTGGCTGTGGAGGAGGTGTTGGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS-3UTR CCA 90 bp | CCCAACACCTCCTCCACAGCCAGGCCTTGGTCCAAAAGGGCAGGCTTGGCAAGGCCAACTGGCTGCCATTaGCTCTCAGGTTGGAAAAGT | + |
|
Preference number: 4 (lower is better) Translates to: PNTSSTARPWSKRAGLARPTGCH*LSGWKS Trigger: ACTTTTCCAACCTGAGAGCCAATGGCAGCCAGTTGG...CCTTGCCAAGCCTGCCCTTTTGGACCAAGGCCTGGCTGTGGAGGAGGTGTTGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS-3UTR GCA 90 bp | CCCTTCGAGGTCCAGTTCCTGGAGACCTTCTCTAAAGGAAAGCCATTGGACTTGGCGCGGCCAACTGGCTaGCATTGGCTCTCAGGTTGG | + |
|
Preference number: 4 (lower is better) Translates to: PFEVQFLETFSKGKPLDLARPTG*HWLSGW Trigger: CCAACCTGAGAGCCAATGGCAGCCAGTTGGCCGCGC...CAAGTCCAATGGCTTTCCTTTAGAGAAGGTCTCCAGGAACTGGACCTCGAAGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS-3UTR GCA 90 bp | GGACTTGGGGAAGGAATCATGAGCCTTTGGGATGTTGTGCATCTTGCTAAAGGTCCCAGGGCAGCGCGCTaGGAGGGTATGAGATGGGGG | + |
|
Preference number: 4 (lower is better) Translates to: GLGEGIMSLWDVVHLAKGPRAAR*EGMRWG Trigger: CCCCCATCTCATACCCTCGCAGCGCGCTGCCCTGGG...ACCTTTAGCAAGATGCACAACATCCCAAAGGCTCATGATTCCTTCCCCAAGTCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS-3UTR GCA 90 bp | CCCTTCGAGGTCCAGTTCCTGGAGACCTTCTCTAAAGGAAAGCCATTGGACTTGCCCGGCCACTTGCACTaGCATGTTCAAGTTGAGCGG | + |
|
Preference number: 4 (lower is better) Translates to: PFEVQFLETFSKGKPLDLPGHLH*HVQVER Trigger: CCGCTCAACTTGAACATGGCAGTGCAAGTGGCCGGG...CAAGTCCAATGGCTTTCCTTTAGAGAAGGTCTCCAGGAACTGGACCTCGAAGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS-3UTR GCA 90 bp | CACCTCTCAGGAGGGTCCCAAAGAGAGCTGAAAGCGAAGGGGGCTCCACTGGCCAATTCCTTACGCTTCTaGCGGTTGATGAATTCATTG | + |
|
Preference number: 4 (lower is better) Translates to: HLSGGSQRELKAKGAPLANSLRF*RLMNSL Trigger: CAATGAATTCATCAACCGGCAGAAGCGTAAGGAATT...GGCCAGTGGAGCCCCCTTCGCTTTCAGCTCTCTTTGGGACCCTCCTGAGAGGTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS-3UTR CCA 90 bp | GTGCAGCCAAGCCTCAAAACAGGCCAGCAGCTCCCCTCACCCATAGCTCAGTTCCATTGGCTCTCAGGTTaGAAAAGTAGAAAGAGTCCG | + |
|
Preference number: 4 (lower is better) Translates to: VQPSLKTGQQLPSPIAQFHWLSG*KSRKSP Trigger: CGGACTCTTTCTACTTTTCCAACCTGAGAGCCAATG...GAACTGAGCTATGGGTGAGGGGAGCTGCTGGCCTGTTTTGAGGCTTGGCTGCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS-3UTR CCA 90 bp | ATGGGGAAGAAGTGCTGGTTTTCTGTCCTTCAAGAGCAGCAACTACAGTCTGAGTGCGAGGGTATGAGATaGGGGGAAGCGCGGCCAACT | + |
|
Preference number: 4 (lower is better) Translates to: MGKKCWFSVLQEQQLQSECEGMR*GEARPT Trigger: AGTTGGCCGCGCTTCCCCCCATCTCATACCCTCGCA...CTCAGACTGTAGTTGCTGCTCTTGAAGGACAGAAAACCAGCACTTCTTCCCCAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS-3UTR CCA 90 bp | GCTGAATGTTTAAAGCCAGTGTTAGATTGCAATTCCCAAACACCTCTCAGGAGGGGAAGCGCGGCCAACTaGCTGCCATTGGCTCTCAGG | + |
|
Preference number: 4 (lower is better) Translates to: AECLKPVLDCNSQTPLRRGSAAN*LPLALR Trigger: CCTGAGAGCCAATGGCAGCCAGTTGGCCGCGCTTCC...CCTCCTGAGAGGTGTTTGGGAATTGCAATCTAACACTGGCTTTAAACATTCAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS GCA 90 bp | AGACTCGGGGGCGAAGGGCGGCCTAGTCCGGCTGCGTTCCTCAGATaGGGTGGGCGCATCAGGCGTATAGAACTTGACCTGGTCTTCGGG | + |
|
Preference number: 5 (lower is better) Translates to: RLGGEGRPSPAAFLR*GGRIRRIELDLVFG Trigger: CCCGAAGACCAGGTCAAGTTCTATACGCCTGATGCGCCCACCGCATCTGAGGAACGCAGCCGGACTAGGCCGCCCTTCGCCCCCGAGTCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS TCA 90 bp | GGCTGCGTTCCTCAGATGCGGTGGGCGCATCAGGCGTATAGAACTTaGCCTGGTCTTCGGGTCCGTCCTTGGCGCCTGGAGACTGCAGGC | + |
|
Preference number: 5 (lower is better) Translates to: GCVPQMRWAHQAYRT*PGLRVRPWRLETAG Trigger: GCCTGCAGTCTCCAGGCGCCAAGGACGGACCCGAAGACCAGGTCAAGTTCTATACGCCTGATGCGCCCACCGCATCTGAGGAACGCAGCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS CCA 90 bp | CTGGTCTTCGGGTCCGTCCTTGGCGCCTGGAGACTGCAGGCCAATTaGCCCAGAGCCGGTCAAGTAAGGCTGAGAGAAGCCTCCAAAGGC | + |
|
Preference number: 5 (lower is better) Translates to: LVFGSVLGAWRLQAN*PRAGQVRLREASKG Trigger: GCCTTTGGAGGCTTCTCTCAGCCTTACTTGACCGGCTCTGGGCCAATTGGCCTGCAGTCTCCAGGCGCCAAGGACGGACCCGAAGACCAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS CCA 90 bp | AGGCGTATAGAACTTGACCTGGTCTTCGGGTCCGTCCTTGGCGCCTaGAGACTGCAGGCCAATTGGCCCAGAGCCGGTCAAGTAAGGCTG | + |
|
Preference number: 5 (lower is better) Translates to: RRIELDLVFGSVLGA*RLQANWPRAGQVRL Trigger: CAGCCTTACTTGACCGGCTCTGGGCCAATTGGCCTGCAGTCTCCAGGCGCCAAGGACGGACCCGAAGACCAGGTCAAGTTCTATACGCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS-3UTR CAA 90 bp | CCTCCTCCACAGCCAGGCCTTGGTCCAAAAGGGCAGGCTTGGCAAGGCCTCAGGCCGCAATCTGCTGCTTaGTGTAGGGTTTCCTCTTCT | + |
|
Preference number: 5 (lower is better) Translates to: PPPQPGLGPKGQAWQGLRPQSAA*CRVSSS Trigger: AGAAGAGGAAACCCTACACAAAGCAGCAGATTGCGG...CCTGAGGCCTTGCCAAGCCTGCCCTTTTGGACCAAGGCCTGGCTGTGGAGGAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS-3UTR CAA 90 bp | AGCCCCGGATGTAAACATCATAGACAAGGACAGGTGACCCCCAGACACCATGCTGAGACTGCAGGCCAATaGGCCCAGAGCCGGTCAAGT | + |
|
Preference number: 5 (lower is better) Translates to: SPGCKHHRQGQVTPRHHAETAGQ*AQSRSS Trigger: ACTTGACCGGCTCTGGGCCAATTGGCCTGCAGTCTC...AGCATGGTGTCTGGGGGTCACCTGTCCTTGTCTATGATGTTTACATCCGGGGCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS-3UTR CAA 90 bp | AGCCCCGGATGTAAACATCATAGACAAGGACAGGTGACCCCCAGACACCATGCTGGCCACCCCGGCCACTaGCACTGCCATGTTCAAGTT | + |
|
Preference number: 5 (lower is better) Translates to: SPGCKHHRQGQVTPRHHAGHPGH*HCHVQV Trigger: AACTTGAACATGGCAGTGCAAGTGGCCGGGGTGGCC...AGCATGGTGTCTGGGGGTCACCTGTCCTTGTCTATGATGTTTACATCCGGGGCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS-3UTR CAA 90 bp | TTCTTCCCTGTGCAGCCAAGCCTCAAAACAGGCCAGCAGCTCCCCTCACCCATAAAGTTGAGCGGGCCTTaGGTGTCTTCCTTGAAGCTG | + |
|
Preference number: 5 (lower is better) Translates to: FFPVQPSLKTGQQLPSPIKLSGP*VSSLKL Trigger: CAGCTTCAAGGAAGACACCAAAGGCCCGCTCAACTT...TATGGGTGAGGGGAGCTGCTGGCCTGTTTTGAGGCTTGGCTGCACAGGGAAGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS-3UTR CAA 90 bp | AGCCCCGGATGTAAACATCATAGACAAGGACAGGTGACCCCCAGACACCATGCTACTGCCATGTTCAAGTaGAGCGGGCCTTTGGTGTCT | + |
|
Preference number: 5 (lower is better) Translates to: SPGCKHHRQGQVTPRHHATAMFK*SGPLVS Trigger: AGACACCAAAGGCCCGCTCAACTTGAACATGGCAGT...AGCATGGTGTCTGGGGGTCACCTGTCCTTGTCTATGATGTTTACATCCGGGGCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS-3UTR CAA 90 bp | GCCATTGGACTTGGGGAAGGAATCATGAGCCTTTGGGATGTTGTGCATCTTGCTGCCAACTGGCTGCCATaGGCTCTCAGGTTGGAAAAG | + |
|
Preference number: 5 (lower is better) Translates to: AIGLGEGIMSLWDVVHLAANWLP*ALRLEK Trigger: CTTTTCCAACCTGAGAGCCAATGGCAGCCAGTTGGC...AGCAAGATGCACAACATCCCAAAGGCTCATGATTCCTTCCCCAAGTCCAATGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS GCA 90 bp | TGCTGGTCGCTGAGGTTCAGCCTGTTAGACAATTCCTTACGCTTCTaGCGGTTGATGAATTCATTGACCAGGAATTCGTTCTCCAGCTCC | + |
|
Preference number: 5 (lower is better) Translates to: CWSLRFSLLDNSLRF*RLMNSLTRNSFSSS Trigger: GGAGCTGGAGAACGAATTCCTGGTCAATGAATTCATCAACCGGCAGAAGCGTAAGGAATTGTCTAACAGGCTGAACCTCAGCGACCAGCA 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS-3UTR CAA 90 bp | GCCATTGGACTTGGGGAAGGAATCATGAGCCTTTGGGATGTTGTGCATCTTGCTCGGTTGATGAATTCATaGACCAGGAATTCGTTCTCC | + |
|
Preference number: 5 (lower is better) Translates to: AIGLGEGIMSLWDVVHLARLMNS*TRNSFS Trigger: GGAGAACGAATTCCTGGTCAATGAATTCATCAACCG...AGCAAGATGCACAACATCCCAAAGGCTCATGATTCCTTCCCCAAGTCCAATGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS TCA 72 bp | AAAGGCAGAGGCGGTGGCAGGCTGCGCAGGGGTGCATaGGGCGGGCGTAGTAGCCCAGGGCAGCGCGCTGCG | + |
|
Preference number: 6 (lower is better) Translates to: KGRGGGRLRRGA*GGRSSPGQRAA Trigger: CGCAGCGCGCTGCCCTGGGCTACTACGCCCGCCTCATGCACCCCTGCGCAGCCTGCCACCGCCTCTGCCTTT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS CCA 72 bp | GGCACAGGGGGCCCCCTGGAGCAGGGTCGCAGAGCCTaGAGCGGTCCGGCCCACACCCGCGTAGTCATACTT | + |
|
Preference number: 6 (lower is better) Translates to: GTGGPLEQGRRA*SGPAHTRVVIL Trigger: AAGTATGACTACGCGGGTGTGGGCCGGACCGCTCCAGGCTCTGCGACCCTGCTCCAGGGGGCCCCCTGTGCC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS CCA 72 bp | GGGTCCGTCCTTGGCGCCTGGAGACTGCAGGCCAATTaGCCCAGAGCCGGTCAAGTAAGGCTGAGAGAAGCC | + |
|
Preference number: 6 (lower is better) Translates to: GSVLGAWRLQAN*PRAGQVRLREA Trigger: GGCTTCTCTCAGCCTTACTTGACCGGCTCTGGGCCAATTGGCCTGCAGTCTCCAGGCGCCAAGGACGGACCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS CAA 72 bp | CGGGTCCGTCCTTGGCGCCTGGAGACTGCAGGCCAATaGGCCCAGAGCCGGTCAAGTAAGGCTGAGAGAAGC | + |
|
Preference number: 6 (lower is better) Translates to: RVRPWRLETAGQ*AQSRSSKAERS Trigger: GCTTCTCTCAGCCTTACTTGACCGGCTCTGGGCCAATTGGCCTGCAGTCTCCAGGCGCCAAGGACGGACCCG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS CAA 90 bp | CCTGGTCTTCGGGTCCGTCCTTGGCGCCTGGAGACTGCAGGCCAATaGGCCCAGAGCCGGTCAAGTAAGGCTGAGAGAAGCCTCCAAAGG | + |
|
Preference number: 6 (lower is better) Translates to: PGLRVRPWRLETAGQ*AQSRSSKAERSLQR Trigger: CCTTTGGAGGCTTCTCTCAGCCTTACTTGACCGGCTCTGGGCCAATTGGCCTGCAGTCTCCAGGCGCCAAGGACGGACCCGAAGACCAGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS CAA 90 bp | CGCAGGCAAGAGGCCACCCCGGCCACTTGCACTGCCATGTTCAAGTaGAGCGGGCCTTTGGTGTCTTCCTTGAAGCTGGAGGCACAGGGG | + |
|
Preference number: 6 (lower is better) Translates to: RRQEATPATCTAMFK*SGPLVSSLKLEAQG Trigger: CCCCTGTGCCTCCAGCTTCAAGGAAGACACCAAAGGCCCGCTCAACTTGAACATGGCAGTGCAAGTGGCCGGGGTGGCCTCTTGCCTGCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS TCA 72 bp | CCTCAGATGCGGTGGGCGCATCAGGCGTATAGAACTTaGCCTGGTCTTCGGGTCCGTCCTTGGCGCCTGGAG | + |
|
Preference number: 6 (lower is better) Translates to: PQMRWAHQAYRT*PGLRVRPWRLE Trigger: CTCCAGGCGCCAAGGACGGACCCGAAGACCAGGTCAAGTTCTATACGCCTGATGCGCCCACCGCATCTGAGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS CCA 72 bp | GAACTTGACCTGGTCTTCGGGTCCGTCCTTGGCGCCTaGAGACTGCAGGCCAATTGGCCCAGAGCCGGTCAA | + |
|
Preference number: 6 (lower is better) Translates to: ELDLVFGSVLGA*RLQANWPRAGQ Trigger: TTGACCGGCTCTGGGCCAATTGGCCTGCAGTCTCCAGGCGCCAAGGACGGACCCGAAGACCAGGTCAAGTTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS GCA 72 bp | AGATCGCAGGCAAGAGGCCACCCCGGCCACTTGCACTaGCATGTTCAAGTTGAGCGGGCCTTTGGTGTCTTC | + |
|
Preference number: 6 (lower is better) Translates to: RSQARGHPGHLH*HVQVERAFGVF Trigger: GAAGACACCAAAGGCCCGCTCAACTTGAACATGGCAGTGCAAGTGGCCGGGGTGGCCTCTTGCCTGCGATCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS CAA 72 bp | GCCACTTGCACTGCCATGTTCAAGTTGAGCGGGCCTTaGGTGTCTTCCTTGAAGCTGGAGGCACAGGGGGCC | + |
|
Preference number: 6 (lower is better) Translates to: ATCTAMFKLSGP*VSSLKLEAQGA Trigger: GGCCCCCTGTGCCTCCAGCTTCAAGGAAGACACCAAAGGCCCGCTCAACTTGAACATGGCAGTGCAAGTGGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS CAA 72 bp | GAGGCCACCCCGGCCACTTGCACTGCCATGTTCAAGTaGAGCGGGCCTTTGGTGTCTTCCTTGAAGCTGGAG | + |
|
Preference number: 6 (lower is better) Translates to: EATPATCTAMFK*SGPLVSSLKLE Trigger: CTCCAGCTTCAAGGAAGACACCAAAGGCCCGCTCAACTTGAACATGGCAGTGCAAGTGGCCGGGGTGGCCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS CCA 72 bp | GAAGCGCGGCCAACTGGCTGCCATTGGCTCTCAGGTTaGAAAAGTAGAAAGAGTCCGGTGACTGTAAATTCA | + |
|
Preference number: 6 (lower is better) Translates to: EARPTGCHWLSG*KSRKSPVTVNS Trigger: TGAATTTACAGTCACCGGACTCTTTCTACTTTTCCAACCTGAGAGCCAATGGCAGCCAGTTGGCCGCGCTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS CAA 90 bp | TCGCTGAGGTTCAGCCTGTTAGACAATTCCTTACGCTTCTGCCGGTaGATGAATTCATTGACCAGGAATTCGTTCTCCAGCTCCGCAATC | + |
|
Preference number: 6 (lower is better) Translates to: SLRFSLLDNSLRFCR*MNSLTRNSFSSSAI Trigger: GATTGCGGAGCTGGAGAACGAATTCCTGGTCAATGAATTCATCAACCGGCAGAAGCGTAAGGAATTGTCTAACAGGCTGAACCTCAGCGA 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS CAA 72 bp | GACAATTCCTTACGCTTCTGCCGGTTGATGAATTCATaGACCAGGAATTCGTTCTCCAGCTCCGCAATCTGC | + |
|
Preference number: 6 (lower is better) Translates to: DNSLRFCRLMNS*TRNSFSSSAIC Trigger: GCAGATTGCGGAGCTGGAGAACGAATTCCTGGTCAATGAATTCATCAACCGGCAGAAGCGTAAGGAATTGTC 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS GCA 72 bp | CTGAGGTTCAGCCTGTTAGACAATTCCTTACGCTTCTaGCGGTTGATGAATTCATTGACCAGGAATTCGTTC | + |
|
Preference number: 6 (lower is better) Translates to: LRFSLLDNSLRF*RLMNSLTRNSF Trigger: GAACGAATTCCTGGTCAATGAATTCATCAACCGGCAGAAGCGTAAGGAATTGTCTAACAGGCTGAACCTCAG 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||
| CDS CAA 72 bp | TTCAGCCTGTTAGACAATTCCTTACGCTTCTGCCGGTaGATGAATTCATTGACCAGGAATTCGTTCTCCAGC | + |
|
Preference number: 6 (lower is better) Translates to: FSLLDNSLRFCR*MNSLTRNSFSS Trigger: GCTGGAGAACGAATTCCTGGTCAATGAATTCATCAACCGGCAGAAGCGTAAGGAATTGTCTAACAGGCTGAA 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001878.6 |
||