Pregenerated sensors for HOXD11 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042499Ensembl transcript IDs: ENSMUST00000142312.3
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GACCGTGCGGCGGCCCGGGAGCGCCGCACACCGGCTCGGGAGCCTTaGAGAGCACGTCTGGCCGGCGGCCGGCGGGCGGGAGCAGATCTC | + |
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Preference number: 5 (lower is better) Translates to: DRAAARERRTPAREP*RARLAGGRRAGADL Trigger: GAGATCTGCTCCCGCCCGCCGGCCGCCGGCCAGACGTGCTCTTCAAGGCTCCCGAGCCGGTGTGCGGCGCTCCCGGGCCGCCGCACGGTC 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142312.3 |
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| CDS GCA 90 bp | GGGCAGGATGCCGTTGCGACCCACGGCGCTGTAGAAGTTAGAGGCTaGGGCCGCCGGACCGTGCGGCGGCCCGGGAGCGCCGCACACCGG | + |
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Preference number: 5 (lower is better) Translates to: GQDAVATHGAVEVRG*GRRTVRRPGSAAHR Trigger: CCGGTGTGCGGCGCTCCCGGGCCGCCGCACGGTCCGGCGGCCGCAGCCTCTAACTTCTACAGCGCCGTGGGTCGCAACGGCATCCTGCCC 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142312.3 |
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| CDS CCA 90 bp | CCCGGGAGCGCCGCACACCGGCTCGGGAGCCTTGAAGAGCACGTCTaGCCGGCGGCCGGCGGGCGGGAGCAGATCTCGTTGCATGGCCGC | + |
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Preference number: 5 (lower is better) Translates to: PGSAAHRLGSLEEHV*PAAGGREQISLHGR Trigger: GCGGCCATGCAACGAGATCTGCTCCCGCCCGCCGGCCGCCGGCCAGACGTGCTCTTCAAGGCTCCCGAGCCGGTGTGCGGCGCTCCCGGG 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142312.3 |
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| CDS CCA 90 bp | CGCGAAAGGCCACCTCCCGCACGGGCTGGACGTGTGGCGCCAGGTTaGAGGAGTAGGGGAAAGTCATCTGGCACGAGGACGGCTGCGAGA | + |
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Preference number: 5 (lower is better) Translates to: RERPPPARAGRVAPG*RSRGKSSGTRTAAR Trigger: TCTCGCAGCCGTCCTCGTGCCAGATGACTTTCCCCTACTCCTCCAACCTGGCGCCACACGTCCAGCCCGTGCGGGAGGTGGCCTTTCGCG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142312.3 |
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| CDS GCA 90 bp | GGAAAGTCATCTGGCACGAGGACGGCTGCGAGAGGAACGACGGCTTaGTGGCGAAGTCCGACGGGGCCACGTAGTAAGCGCAGCCCGGCA | + |
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Preference number: 5 (lower is better) Translates to: GKSSGTRTAARGTTA*WRSPTGPRSKRSPA Trigger: TGCCGGGCTGCGCTTACTACGTGGCCCCGTCGGACTTCGCCAGCAAGCCGTCGTTCCTCTCGCAGCCGTCCTCGTGCCAGATGACTTTCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142312.3 |
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| CDS CCA 90 bp | AAGTCATCTGGCACGAGGACGGCTGCGAGAGGAACGACGGCTTGCTaGCGAAGTCCGACGGGGCCACGTAGTAAGCGCAGCCCGGCAGGT | + |
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Preference number: 5 (lower is better) Translates to: KSSGTRTAARGTTAC*RSPTGPRSKRSPAG Trigger: ACCTGCCGGGCTGCGCTTACTACGTGGCCCCGTCGGACTTCGCCAGCAAGCCGTCGTTCCTCTCGCAGCCGTCCTCGTGCCAGATGACTT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142312.3 |
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| CDS CAA 90 bp | GGACCGTGCGGCGGCCCGGGAGCGCCGCACACCGGCTCGGGAGCCTaGAAGAGCACGTCTGGCCGGCGGCCGGCGGGCGGGAGCAGATCT | + |
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Preference number: 6 (lower is better) Translates to: GPCGGPGAPHTGSGA*KSTSGRRPAGGSRS Trigger: AGATCTGCTCCCGCCCGCCGGCCGCCGGCCAGACGTGCTCTTCAAGGCTCCCGAGCCGGTGTGCGGCGCTCCCGGGCCGCCGCACGGTCC 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142312.3 |
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| CDS GCA 72 bp | GCCGTTGCGACCCACGGCGCTGTAGAAGTTAGAGGCTaGGGCCGCCGGACCGTGCGGCGGCCCGGGAGCGCC | + |
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Preference number: 6 (lower is better) Translates to: AVATHGAVEVRG*GRRTVRRPGSA Trigger: GGCGCTCCCGGGCCGCCGCACGGTCCGGCGGCCGCAGCCTCTAACTTCTACAGCGCCGTGGGTCGCAACGGC 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142312.3 |
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| CDS CCA 72 bp | TTCACCGCCACCGCCTTCCGCCGCCCCCTTGGGCTCTaGGCCCGGAGTCGCCTTGGCGCAGGGACTGCCCCC | + |
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Preference number: 6 (lower is better) Translates to: FTATAFRRPLGL*ARSRLGAGTAP Trigger: GGGGGCAGTCCCTGCGCCAAGGCGACTCCGGGCCCAGAGCCCAAGGGGGCGGCGGAAGGCGGTGGCGGTGAA 76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000142312.3 |
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| CDS CAA 72 bp | CCCTCGCCTTCACCGCCACCGCCTTCCGCCGCCCCCTaGGGCTCTGGGCCCGGAGTCGCCTTGGCGCAGGGA | + |
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Preference number: 6 (lower is better) Translates to: PSPSPPPPSAAP*GSGPGVALAQG Trigger: TCCCTGCGCCAAGGCGACTCCGGGCCCAGAGCCCAAGGGGGCGGCGGAAGGCGGTGGCGGTGAAGGCGAGGG 76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000142312.3 |
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| CDS CCA 72 bp | GCCGCACACCGGCTCGGGAGCCTTGAAGAGCACGTCTaGCCGGCGGCCGGCGGGCGGGAGCAGATCTCGTTG | + |
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Preference number: 6 (lower is better) Translates to: AAHRLGSLEEHV*PAAGGREQISL Trigger: CAACGAGATCTGCTCCCGCCCGCCGGCCGCCGGCCAGACGTGCTCTTCAAGGCTCCCGAGCCGGTGTGCGGC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142312.3 |
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| CDS CCA 72 bp | GGCACGAGGACGGCTGCGAGAGGAACGACGGCTTGCTaGCGAAGTCCGACGGGGCCACGTAGTAAGCGCAGC | + |
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Preference number: 6 (lower is better) Translates to: GTRTAARGTTAC*RSPTGPRSKRS Trigger: GCTGCGCTTACTACGTGGCCCCGTCGGACTTCGCCAGCAAGCCGTCGTTCCTCTCGCAGCCGTCCTCGTGCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142312.3 |
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| CDS GCA 72 bp | ACGGGGCCACGTAGTAAGCGCAGCCCGGCAGGTACATaGTGGCTGCGCTGGGGCCGCACTCGTCAAAGTCGT | + |
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Preference number: 6 (lower is better) Translates to: TGPRSKRSPAGT*WLRWGRTRQSR Trigger: ACGACTTTGACGAGTGCGGCCCCAGCGCAGCCAGCATGTACCTGCCGGGCTGCGCTTACTACGTGGCCCCGT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000142312.3 |
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| CDS GCA 72 bp | TCTGGCACGAGGACGGCTGCGAGAGGAACGACGGCTTaGTGGCGAAGTCCGACGGGGCCACGTAGTAAGCGC | + |
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Preference number: 6 (lower is better) Translates to: SGTRTAARGTTA*WRSPTGPRSKR Trigger: GCGCTTACTACGTGGCCCCGTCGGACTTCGCCAGCAAGCCGTCGTTCCTCTCGCAGCCGTCCTCGTGCCAGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142312.3 |
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| CDS CCA 72 bp | CCACCTCCCGCACGGGCTGGACGTGTGGCGCCAGGTTaGAGGAGTAGGGGAAAGTCATCTGGCACGAGGACG | + |
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Preference number: 6 (lower is better) Translates to: PPPARAGRVAPG*RSRGKSSGTRT Trigger: CGTCCTCGTGCCAGATGACTTTCCCCTACTCCTCCAACCTGGCGCCACACGTCCAGCCCGTGCGGGAGGTGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142312.3 |
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| CDS CCA 72 bp | GGGCCACGTAGTAAGCGCAGCCCGGCAGGTACATGCTaGCTGCGCTGGGGCCGCACTCGTCAAAGTCGTTCA | + |
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Preference number: 6 (lower is better) Translates to: GPRSKRSPAGTC*LRWGRTRQSRS Trigger: TGAACGACTTTGACGAGTGCGGCCCCAGCGCAGCCAGCATGTACCTGCCGGGCTGCGCTTACTACGTGGCCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142312.3 |
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