Pregenerated sensors for HOXD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042448Ensembl transcript IDs: ENSMUST00000047793.6
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AATCCTTACCTACCCTGTGGATTTGTTCCGCTACTAACTAAACAGTaGTTGTGTTTCTTCACCCAGGCACACGAAGAGGTAGGAGCGCCA | + |
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Preference number: 1 (lower is better) Translates to: NPYLPCGFVPLLTKQ*LCFFTQAHEEVGAP Trigger: TGGCGCTCCTACCTCTTCGTGTGCCTGGGTGAAGAAACACAATCACTGTTTAGTTAGTAGCGGAACAAATCCACAGGGTAGGTAAGGATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| 3UTR GCA 90 bp | TATACACAGCCTCTGGAACTCAGAAGCCAATTTAGACAATTCCTTTaGCAAGTAAAATCCGTATTAATTTCTACCCATGCCCACCTCCAG | + |
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Preference number: 1 (lower is better) Translates to: YTQPLELRSQFRQFL*QVKSVLISTHAHLQ Trigger: CTGGAGGTGGGCATGGGTAGAAATTAATACGGATTTTACTTGGCAAAGGAATTGTCTAAATTGGCTTCTGAGTTCCAGAGGCTGTGTATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| 3UTR TCA 72 bp | CTACCCTGTGGATTTGTTCCGCTACTAACTAAACAGTaGTTGTGTTTCTTCACCCAGGCACACGAAGAGGTA | + |
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Preference number: 3 (lower is better) Translates to: LPCGFVPLLTKQ*LCFFTQAHEEV Trigger: TACCTCTTCGTGTGCCTGGGTGAAGAAACACAATCACTGTTTAGTTAGTAGCGGAACAAATCCACAGGGTAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| 3UTR GCA 72 bp | CCTTTGCCAAGTAAAATCCGTATTAATTTCTACCCATaGCCACCTCCAGCCCAAACTAAGCTCTCAAGTCTA | + |
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Preference number: 3 (lower is better) Translates to: PLPSKIRINFYP*PPPAQTKLSSL Trigger: TAGACTTGAGAGCTTAGTTTGGGCTGGAGGTGGGCATGGGTAGAAATTAATACGGATTTTACTTGGCAAAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| 3UTR GCA 72 bp | CCTCTGGAACTCAGAAGCCAATTTAGACAATTCCTTTaGCAAGTAAAATCCGTATTAATTTCTACCCATGCC | + |
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Preference number: 3 (lower is better) Translates to: PLELRSQFRQFL*QVKSVLISTHA Trigger: GGCATGGGTAGAAATTAATACGGATTTTACTTGGCAAAGGAATTGTCTAAATTGGCTTCTGAGTTCCAGAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS-3UTR TCA 90 bp | TACCCATGCCCACCTCCAGCCCAAACTAAGCTCTCAAGTCTATTCAAAGGTGGGTGTGGGACCGGGGACTaGGCGGGGCCTGCGGGAGGC | + |
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Preference number: 4 (lower is better) Translates to: YPCPPPAQTKLSSLFKGGCGTGD*AGPAGG Trigger: GCCTCCCGCAGGCCCCGCTCAGTCCCCGGTCCCACA...CCCACCTTTGAATAGACTTGAGAGCTTAGTTTGGGCTGGAGGTGGGCATGGGTA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS-3UTR GCA 90 bp | CTATTCAAAGGTGGGGAGCAGTCTGTGACTTCTGTAGACCCAAGGTCCTCAGCCAGGCGCCGTCTCCGCTaGCCAGGGGGAAGGCCGGCT | + |
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Preference number: 4 (lower is better) Translates to: LFKGGEQSVTSVDPRSSARRRLR*PGGRPA Trigger: AGCCGGCCTTCCCCCTGGGCAGCGGAGACGGCGCCT...GGCTGAGGACCTTGGGTCTACAGAAGTCACAGACTGCTCCCCACCTTTGAATAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS-3UTR TCA 90 bp | TACCCATGCCCACCTCCAGCCCAAACTAAGCTCTCAAGTCTATTCAAAGGTGGGGCCGGGGACACAGTCTaGAAGGGCCCGGGGTGGCCG | + |
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Preference number: 4 (lower is better) Translates to: YPCPPPAQTKLSSLFKGGAGDTV*KGPGWP Trigger: CGGCCACCCCGGGCCCTTTCAGACTGTGTCCCCGGC...CCCACCTTTGAATAGACTTGAGAGCTTAGTTTGGGCTGGAGGTGGGCATGGGTA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS-3UTR CCA 90 bp | GGGGAGCAGTCTGTGACTTCTGTAGACCCAAGGTCCTCAGCCTTAAGAGTGGGCCGGCGCGGCAGAACTTaGGTGCGAAGCCGAGCACGT | + |
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Preference number: 4 (lower is better) Translates to: GEQSVTSVDPRSSALRVGRRGRT*VRSRAR Trigger: ACGTGCTCGGCTTCGCACCCAAGTTCTGCCGCGCCG...GCCCACTCTTAAGGCTGAGGACCTTGGGTCTACAGAAGTCACAGACTGCTCCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS-3UTR CCA 90 bp | CCTCCAGCCCAAACTAAGCTCTCAAGTCTATTCAAAGGTGGGGAGCAGTCTGTGTGGGAGAGGCCGGCTTaGGGCAGGCTCCAGGGGCCG | + |
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Preference number: 4 (lower is better) Translates to: PPAQTKLSSLFKGGEQSVWERPA*GRLQGP Trigger: CGGCCCCTGGAGCCTGCCCCAAGCCGGCCTCTCCCA...CACAGACTGCTCCCCACCTTTGAATAGACTTGAGAGCTTAGTTTGGGCTGGAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS-3UTR CCA 90 bp | CTCAAGTCTATTCAAAGGTGGGGAGCAGTCTGTGACTTCTGTAGACCCAAGGTCGCGTGGGCCGAGCGGTaGCCAGGGGCAGGCAGCTCA | + |
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Preference number: 4 (lower is better) Translates to: LKSIQRWGAVCDFCRPKVAWAER*PGAGSS Trigger: TGAGCTGCCTGCCCCTGGCCACCGCTCGGCCCACGC...GACCTTGGGTCTACAGAAGTCACAGACTGCTCCCCACCTTTGAATAGACTTGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS-3UTR GCA 90 bp | TCTATTCAAAGGTGGGGAGCAGTCTGTGACTTCTGTAGACCCAAGGTCCTCAGCGCGGCAGAACTTGGGTaGGAAGCCGAGCACGTCGCC | + |
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Preference number: 4 (lower is better) Translates to: SIQRWGAVCDFCRPKVLSAAELG*EAEHVA Trigger: GGCGACGTGCTCGGCTTCGCACCCAAGTTCTGCCGC...GCTGAGGACCTTGGGTCTACAGAAGTCACAGACTGCTCCCCACCTTTGAATAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS-3UTR CCA 90 bp | GGCACACGAAGAGGTAGGAGCGCCACTTTAAATAAACAAACTGGAGCACAATATCCGGGAGGCTGGAGGTaGGAGAGGCCGGCTTGGGGC | + |
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Preference number: 4 (lower is better) Translates to: GTRRGRSATLNKQTGAQYPGGWR*ERPAWG Trigger: GCCCCAAGCCGGCCTCTCCCACCTCCAGCCTCCCGG...ATATTGTGCTCCAGTTTGTTTATTTAAAGTGGCGCTCCTACCTCTTCGTGTGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS-3UTR CCA 90 bp | CTCAAGTCTATTCAAAGGTGGGGAGCAGTCTGTGACTTCTGTAGACCCAAGGTCCACTCGAAAGTGCTGTaGGCGGCCGGGAGGCTGGAG | + |
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Preference number: 4 (lower is better) Translates to: LKSIQRWGAVCDFCRPKVHSKVL*AAGRLE Trigger: CTCCAGCCTCCCGGCCGCCCACAGCACTTTCGAGTG...GACCTTGGGTCTACAGAAGTCACAGACTGCTCCCCACCTTTGAATAGACTTGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS-3UTR CCA 90 bp | TCTATTCAAAGGTGGGGAGCAGTCTGTGACTTCTGTAGACCCAAGGTCCTCAGCCCACAGAGGCAGCTGTaGCCAGAAGCCCCTCTCGTT | + |
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Preference number: 4 (lower is better) Translates to: SIQRWGAVCDFCRPKVLSPQRQL*PEAPLV Trigger: AACGAGAGGGGCTTCTGGCCACAGCTGCCTCTGTGG...GCTGAGGACCTTGGGTCTACAGAAGTCACAGACTGCTCCCCACCTTTGAATAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS-3UTR GCA 90 bp | GGGGAGCAGTCTGTGACTTCTGTAGACCCAAGGTCCTCAGCCTTAAGAGTGGGCCATATTCGGACAGTTTaGTTTTCTTGGGGGCGTTCC | + |
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Preference number: 4 (lower is better) Translates to: GEQSVTSVDPRSSALRVGHIRTV*FSWGRS Trigger: GGAACGCCCCCAAGAAAAGCAAACTGTCCGAATATG...GCCCACTCTTAAGGCTGAGGACCTTGGGTCTACAGAAGTCACAGACTGCTCCCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS-3UTR TCA 90 bp | CAATTCCTTTGCCAAGTAAAATCCGTATTAATTTCTACCCATGCCCACCTCCAGAGTCCACCTGGCCGCTaGGCAGGAATGATCCCCCGC | + |
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Preference number: 4 (lower is better) Translates to: QFLCQVKSVLISTHAHLQSPPGR*AGMIPR Trigger: GCGGGGGATCATTCCTGCTCAGCGGCCAGGTGGACT...CTGGAGGTGGGCATGGGTAGAAATTAATACGGATTTTACTTGGCAAAGGAATTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS-3UTR GCA 90 bp | AATTTCTACCCATGCCCACCTCCAGCCCAAACTAAGCTCTCAAGTCTATTCAAATCATCCACTCGAAAGTaGTGTGGGCGGCCGGGAGGC | + |
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Preference number: 4 (lower is better) Translates to: NFYPCPPPAQTKLSSLFKSSTRK*CGRPGG Trigger: GCCTCCCGGCCGCCCACAGCACTTTCGAGTGGATGA...TTTGAATAGACTTGAGAGCTTAGTTTGGGCTGGAGGTGGGCATGGGTAGAAATT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS-3UTR GCA 90 bp | CTATTCAAAGGTGGGGAGCAGTCTGTGACTTCTGTAGACCCAAGGTCCTCAGCCCGTTCCCTCTTCTTCTaGTTCATCCTACGGTTCTGG | + |
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Preference number: 4 (lower is better) Translates to: LFKGGEQSVTSVDPRSSARSLFF*FILRFW Trigger: CCAGAACCGTAGGATGAAGCAGAAGAAGAGGGAACG...GGCTGAGGACCTTGGGTCTACAGAAGTCACAGACTGCTCCCCACCTTTGAATAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS-3UTR CCA 90 bp | GGCACACGAAGAGGTAGGAGCGCCACTTTAAATAAACAAACTGGAGCACAATATAGAAGACCGCCGAGGTaGCATAGTGGACGTGCGCCC | + |
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Preference number: 4 (lower is better) Translates to: GTRRGRSATLNKQTGAQYRRPPR*HSGRAP Trigger: GGGCGCACGTCCACTATGCCACCTCGGCGGTCTTCT...ATATTGTGCTCCAGTTTGTTTATTTAAAGTGGCGCTCCTACCTCTTCGTGTGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS-3UTR CCA 90 bp | TACCCATGCCCACCTCCAGCCCAAACTAAGCTCTCAAGTCTATTCAAAGGTGGGTCAGCTGTAAACAGTTaGCTATCTCGATGCGTCGGG | + |
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Preference number: 4 (lower is better) Translates to: YPCPPPAQTKLSSLFKGGSAVNS*LSRCVG Trigger: CCCGACGCATCGAGATAGCCAACTGTTTACAGCTGA...CCCACCTTTGAATAGACTTGAGAGCTTAGTTTGGGCTGGAGGTGGGCATGGGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS-3UTR CCA 90 bp | CCTCCAGCCCAAACTAAGCTCTCAAGTCTATTCAAAGGTGGGGAGCAGTCTGTGACAGTTTGCTTTTCTTaGGGGCGTTCCTCTTCACTT | + |
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Preference number: 4 (lower is better) Translates to: PPAQTKLSSLFKGGEQSVTVCFS*GRSSSL Trigger: AAGTGAAGAGGAACGCCCCCAAGAAAAGCAAACTGT...CACAGACTGCTCCCCACCTTTGAATAGACTTGAGAGCTTAGTTTGGGCTGGAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS-3UTR GCA 90 bp | TACCCATGCCCACCTCCAGCCCAAACTAAGCTCTCAAGTCTATTCAAAGGTGGGTCTAGCTCTGTCAGTTaGTTGGTGCTGAAATTTGTG | + |
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Preference number: 4 (lower is better) Translates to: YPCPPPAQTKLSSLFKGGSSSVS*LVLKFV Trigger: CACAAATTTCAGCACCAAGCAACTGACAGAGCTAGA...CCCACCTTTGAATAGACTTGAGAGCTTAGTTTGGGCTGGAGGTGGGCATGGGTA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS-3UTR TCA 90 bp | TTGAAGCAGCTTAGCTACATAGAGGAAACCCTAGCTAGCTTTGATCATCTCAGGTCAGTTGCTTGGTGCTaGAATTTGTGCGGATGGCAC | + |
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Preference number: 4 (lower is better) Translates to: LKQLSYIEETLASFDHLRSVAWC*NLCGWH Trigger: GTGCCATCCGCACAAATTTCAGCACCAAGCAACTGA...CCTGAGATGATCAAAGCTAGCTAGGGTTTCCTCTATGTAGCTAAGCTGCTTCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS-3UTR CCA 90 bp | TTGAAGCAGCTTAGCTACATAGAGGAAACCCTAGCTAGCTTTGATCATCTCAGGAACCAGATTTTGACCTaGGTGTCATTCAGCTGTAAA | + |
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Preference number: 4 (lower is better) Translates to: LKQLSYIEETLASFDHLRNQILT*VSFSCK Trigger: TTTACAGCTGAATGACACCCAGGTCAAAATCTGGTT...CCTGAGATGATCAAAGCTAGCTAGGGTTTCCTCTATGTAGCTAAGCTGCTTCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS GCA 90 bp | CGGCTGCAGGGCCACAGGGCGCGCGTCGGCGCGGCAGAACTTGGGTaGGAAGCCGAGCACGTCGCCGCCTACCCCTCCGCTGCCACCGCC | + |
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Preference number: 5 (lower is better) Translates to: RLQGHRARVGAAELG*EAEHVAAYPSAATA Trigger: GGCGGTGGCAGCGGAGGGGTAGGCGGCGACGTGCTCGGCTTCGCACCCAAGTTCTGCCGCGCCGACGCGCGCCCTGTGGCCCTGCAGCCG 77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS GCA 90 bp | CAGCTCACGAAGGCGCCGTCTCCGCTGCCCAGGGGGAAGGCCGGCTaGAGGGCCACAGGGCGCGCGTCGGCGCGGCAGAACTTGGGTGCG | + |
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Preference number: 5 (lower is better) Translates to: QLTKAPSPLPRGKAG*RATGRASARQNLGA Trigger: CGCACCCAAGTTCTGCCGCGCCGACGCGCGCCCTGTGGCCCTGCAGCCGGCCTTCCCCCTGGGCAGCGGAGACGGCGCCTTCGTGAGCTG 76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS CCA 90 bp | AGGCCGGCTGCAGGGCCACAGGGCGCGCGTCGGCGCGGCAGAACTTaGGTGCGAAGCCGAGCACGTCGCCGCCTACCCCTCCGCTGCCAC | + |
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Preference number: 5 (lower is better) Translates to: RPAAGPQGARRRGRT*VRSRARRRLPLRCH Trigger: GTGGCAGCGGAGGGGTAGGCGGCGACGTGCTCGGCTTCGCACCCAAGTTCTGCCGCGCCGACGCGCGCCCTGTGGCCCTGCAGCCGGCCT 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS GCA 90 bp | CGCCGGCCCGGACCCCAAGAAGCCATACTCGGCGGCAGAGGCAGGTaGGGCGCCCCGCTCGTAGGCGCCTTCCAGGGTGCAGGGCGCGTA | + |
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Preference number: 5 (lower is better) Translates to: RRPGPQEAILGGRGR*GAPLVGAFQGAGRV Trigger: TACGCGCCCTGCACCCTGGAAGGCGCCTACGAGCGGGGCGCCGCACCTGCCTCTGCCGCCGAGTATGGCTTCTTGGGGTCCGGGCCGGCG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS GCA 90 bp | GGCATAGTGGACGTGCGCCCCGCCCTCGTCCGCCGCTCTCCCAAGTaGGCCCGGGAAGTCAAACGCCGGCCCGGACCCCAAGAAGCCATA | + |
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Preference number: 5 (lower is better) Translates to: GIVDVRPALVRRSPK*AREVKRRPGPQEAI Trigger: TATGGCTTCTTGGGGTCCGGGCCGGCGTTTGACTTCCCGGGCGCACTTGGGAGAGCGGCGGACGAGGGCGGGGCGCACGTCCACTATGCC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS TCA 90 bp | GGAAGGGGCCAGGCTCGCCAAAGGCAGCGAAGTCCACCTGGCCGCTaGGCAGGAATGATCCCCCGCCGGAGAAGACCGCCGAGGTGGCAT | + |
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Preference number: 5 (lower is better) Translates to: GRGQARQRQRSPPGR*AGMIPRRRRPPRWH Trigger: ATGCCACCTCGGCGGTCTTCTCCGGCGGGGGATCATTCCTGCTCAGCGGCCAGGTGGACTTCGCTGCCTTTGGCGAGCCTGGCCCCTTCC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS GCA 90 bp | AGAACTTGGGTGCGAAGCCGAGCACGTCGCCGCCTACCCCTCCGCTaGCACCGCCCGCGGCGCACGACACGTACTCCAGGTAAGAGCTCA | + |
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Preference number: 5 (lower is better) Translates to: RTWVRSRARRRLPLR*HRPRRTTRTPGKSS Trigger: TGAGCTCTTACCTGGAGTACGTGTCGTGCGCCGCGGGCGGTGGCAGCGGAGGGGTAGGCGGCGACGTGCTCGGCTTCGCACCCAAGTTCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS TCA 90 bp | AGGCTCGCCAAAGGCAGCGAAGTCCACCTGGCCGCTGAGCAGGAATaGTCCCCCGCCGGAGAAGACCGCCGAGGTGGCATAGTGGACGTG | + |
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Preference number: 5 (lower is better) Translates to: RLAKGSEVHLAAEQE*SPAGEDRRGGIVDV Trigger: CACGTCCACTATGCCACCTCGGCGGTCTTCTCCGGCGGGGGATCATTCCTGCTCAGCGGCCAGGTGGACTTCGCTGCCTTTGGCGAGCCT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS-3UTR CAA 90 bp | TACCCATGCCCACCTCCAGCCCAAACTAAGCTCTCAAGTCTATTCAAAGGTGGGGTGGGAGAGGCCGGCTaGGGGCAGGCTCCAGGGGCC | + |
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Preference number: 5 (lower is better) Translates to: YPCPPPAQTKLSSLFKGGVGEAG*GQAPGA Trigger: GGCCCCTGGAGCCTGCCCCAAGCCGGCCTCTCCCAC...CCCACCTTTGAATAGACTTGAGAGCTTAGTTTGGGCTGGAGGTGGGCATGGGTA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS-3UTR CAA 90 bp | CTATTCAAAGGTGGGGAGCAGTCTGTGACTTCTGTAGACCCAAGGTCCTCAGCCTCGGCGCGGCAGAACTaGGGTGCGAAGCCGAGCACG | + |
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Preference number: 5 (lower is better) Translates to: LFKGGEQSVTSVDPRSSASARQN*GAKPST Trigger: CGTGCTCGGCTTCGCACCCAAGTTCTGCCGCGCCGA...GGCTGAGGACCTTGGGTCTACAGAAGTCACAGACTGCTCCCCACCTTTGAATAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS-3UTR CAA 90 bp | GGCACACGAAGAGGTAGGAGCGCCACTTTAAATAAACAAACTGGAGCACAATATCCGTCTGCGGGCTCCTaGAGACACGCGGGGAAGGGG | + |
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Preference number: 5 (lower is better) Translates to: GTRRGRSATLNKQTGAQYPSAGS*RHAGKG Trigger: CCCCTTCCCCGCGTGTCTCAAGGAGCCCGCAGACGG...ATATTGTGCTCCAGTTTGTTTATTTAAAGTGGCGCTCCTACCTCTTCGTGTGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS GCA 90 bp | TGCGGATGGCACTGGGAGGGCTTGTGGCTCCATATTCGGACAGTTTaGTTTTCTTGGGGGCGTTCCTCTTCACTTTCATCCACTCGAAAG | + |
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Preference number: 5 (lower is better) Translates to: CGWHWEGLWLHIRTV*FSWGRSSSLSSTRK Trigger: CTTTCGAGTGGATGAAAGTGAAGAGGAACGCCCCCAAGAAAAGCAAACTGTCCGAATATGGAGCCACAAGCCCTCCCAGTGCCATCCGCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS CCA 90 bp | CACTGGGAGGGCTTGTGGCTCCATATTCGGACAGTTTGCTTTTCTTaGGGGCGTTCCTCTTCACTTTCATCCACTCGAAAGTGCTGTGGG | + |
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Preference number: 5 (lower is better) Translates to: HWEGLWLHIRTVCFS*GRSSSLSSTRKCCG Trigger: CCCACAGCACTTTCGAGTGGATGAAAGTGAAGAGGAACGCCCCCAAGAAAAGCAAACTGTCCGAATATGGAGCCACAAGCCCTCCCAGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS-3UTR CAA 90 bp | CTCAAGTCTATTCAAAGGTGGGGAGCAGTCTGTGACTTCTGTAGACCCAAGGTCAGCTCTGTCAGTTGCTaGGTGCTGAAATTTGTGCGG | + |
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Preference number: 5 (lower is better) Translates to: LKSIQRWGAVCDFCRPKVSSVSC*VLKFVR Trigger: CCGCACAAATTTCAGCACCAAGCAACTGACAGAGCT...GACCTTGGGTCTACAGAAGTCACAGACTGCTCCCCACCTTTGAATAGACTTGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS-3UTR CAA 90 bp | GCCCAAACTAAGCTCTCAAGTCTATTCAAAGGTGGGGAGCAGTCTGTGACTTCTAGATTCCGGCCAGATTaGATGGGACTTGTTTCTGAC | + |
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Preference number: 5 (lower is better) Translates to: AQTKLSSLFKGGEQSVTSRFRPD*MGLVSD Trigger: GTCAGAAACAAGTCCCATCAAATCTGGCCGGAATCT...AGAAGTCACAGACTGCTCCCCACCTTTGAATAGACTTGAGAGCTTAGTTTGGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS-3UTR CAA 90 bp | CAATTCCTTTGCCAAGTAAAATCCGTATTAATTTCTACCCATGCCCACCTCCAGTTCAGCTGTAAACAGTaGGCTATCTCGATGCGTCGG | + |
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Preference number: 5 (lower is better) Translates to: QFLCQVKSVLISTHAHLQFSCKQ*AISMRR Trigger: CCGACGCATCGAGATAGCCAACTGTTTACAGCTGAA...CTGGAGGTGGGCATGGGTAGAAATTAATACGGATTTTACTTGGCAAAGGAATTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS GCA 72 bp | CAGGTGCGGCGCCCCGCTCGTAGGCGCCTTCCAGGGTaGAGGGCGCGTACCGGGGCGCGGCGGGCTGTGGGA | + |
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Preference number: 6 (lower is better) Translates to: QVRRPARRRLPG*RARTGARRAVG Trigger: TCCCACAGCCCGCCGCGCCCCGGTACGCGCCCTGCACCCTGGAAGGCGCCTACGAGCGGGGCGCCGCACCTG 79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS GCA 72 bp | CCAGGGGCAGGCAGCTCACGAAGGCGCCGTCTCCGCTaGCCAGGGGGAAGGCCGGCTGCAGGGCCACAGGGC | + |
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Preference number: 6 (lower is better) Translates to: PGAGSSRRRRLR*PGGRPAAGPQG Trigger: GCCCTGTGGCCCTGCAGCCGGCCTTCCCCCTGGGCAGCGGAGACGGCGCCTTCGTGAGCTGCCTGCCCCTGG 76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS GCA 72 bp | GGCCACAGGGCGCGCGTCGGCGCGGCAGAACTTGGGTaGGAAGCCGAGCACGTCGCCGCCTACCCCTCCGCT | + |
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Preference number: 6 (lower is better) Translates to: GHRARVGAAELG*EAEHVAAYPSA Trigger: AGCGGAGGGGTAGGCGGCGACGTGCTCGGCTTCGCACCCAAGTTCTGCCGCGCCGACGCGCGCCCTGTGGCC 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS GCA 72 bp | GACGTGCGCCCCGCCCTCGTCCGCCGCTCTCCCAAGTaGGCCCGGGAAGTCAAACGCCGGCCCGGACCCCAA | + |
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Preference number: 6 (lower is better) Translates to: DVRPALVRRSPK*AREVKRRPGPQ Trigger: TTGGGGTCCGGGCCGGCGTTTGACTTCCCGGGCGCACTTGGGAGAGCGGCGGACGAGGGCGGGGCGCACGTC 75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS CCA 72 bp | GCAGGGCCACAGGGCGCGCGTCGGCGCGGCAGAACTTaGGTGCGAAGCCGAGCACGTCGCCGCCTACCCCTC | + |
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Preference number: 6 (lower is better) Translates to: AGPQGARRRGRT*VRSRARRRLPL Trigger: GAGGGGTAGGCGGCGACGTGCTCGGCTTCGCACCCAAGTTCTGCCGCGCCGACGCGCGCCCTGTGGCCCTGC 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS CAA 90 bp | AAGGCCGGCTGCAGGGCCACAGGGCGCGCGTCGGCGCGGCAGAACTaGGGTGCGAAGCCGAGCACGTCGCCGCCTACCCCTCCGCTGCCA | + |
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Preference number: 6 (lower is better) Translates to: KAGCRATGRASARQN*GAKPSTSPPTPPLP Trigger: TGGCAGCGGAGGGGTAGGCGGCGACGTGCTCGGCTTCGCACCCAAGTTCTGCCGCGCCGACGCGCGCCCTGTGGCCCTGCAGCCGGCCTT 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS CAA 72 bp | TGCAGGGCCACAGGGCGCGCGTCGGCGCGGCAGAACTaGGGTGCGAAGCCGAGCACGTCGCCGCCTACCCCT | + |
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Preference number: 6 (lower is better) Translates to: CRATGRASARQN*GAKPSTSPPTP Trigger: AGGGGTAGGCGGCGACGTGCTCGGCTTCGCACCCAAGTTCTGCCGCGCCGACGCGCGCCCTGTGGCCCTGCA 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS CCA 72 bp | GCAGGAATGATCCCCCGCCGGAGAAGACCGCCGAGGTaGCATAGTGGACGTGCGCCCCGCCCTCGTCCGCCG | + |
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Preference number: 6 (lower is better) Translates to: AGMIPRRRRPPR*HSGRAPRPRPP Trigger: CGGCGGACGAGGGCGGGGCGCACGTCCACTATGCCACCTCGGCGGTCTTCTCCGGCGGGGGATCATTCCTGC 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS GCA 72 bp | GGACCCCAAGAAGCCATACTCGGCGGCAGAGGCAGGTaGGGCGCCCCGCTCGTAGGCGCCTTCCAGGGTGCA | + |
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Preference number: 6 (lower is better) Translates to: GPQEAILGGRGR*GAPLVGAFQGA Trigger: TGCACCCTGGAAGGCGCCTACGAGCGGGGCGCCGCACCTGCCTCTGCCGCCGAGTATGGCTTCTTGGGGTCC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS TCA 72 bp | CAGGCTCGCCAAAGGCAGCGAAGTCCACCTGGCCGCTaGGCAGGAATGATCCCCCGCCGGAGAAGACCGCCG | + |
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Preference number: 6 (lower is better) Translates to: QARQRQRSPPGR*AGMIPRRRRPP Trigger: CGGCGGTCTTCTCCGGCGGGGGATCATTCCTGCTCAGCGGCCAGGTGGACTTCGCTGCCTTTGGCGAGCCTG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS CCA 72 bp | AAGGGGCCAGGCTCGCCAAAGGCAGCGAAGTCCACCTaGCCGCTGAGCAGGAATGATCCCCCGCCGGAGAAG | + |
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Preference number: 6 (lower is better) Translates to: KGPGSPKAAKST*PLSRNDPPPEK Trigger: CTTCTCCGGCGGGGGATCATTCCTGCTCAGCGGCCAGGTGGACTTCGCTGCCTTTGGCGAGCCTGGCCCCTT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS TCA 72 bp | AAAGGCAGCGAAGTCCACCTGGCCGCTGAGCAGGAATaGTCCCCCGCCGGAGAAGACCGCCGAGGTGGCATA | + |
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Preference number: 6 (lower is better) Translates to: KGSEVHLAAEQE*SPAGEDRRGGI Trigger: TATGCCACCTCGGCGGTCTTCTCCGGCGGGGGATCATTCCTGCTCAGCGGCCAGGTGGACTTCGCTGCCTTT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS CAA 90 bp | GCACTGGGAGGGCTTGTGGCTCCATATTCGGACAGTTTGCTTTTCTaGGGGGCGTTCCTCTTCACTTTCATCCACTCGAAAGTGCTGTGG | + |
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Preference number: 6 (lower is better) Translates to: ALGGLVAPYSDSLLF*GAFLFTFIHSKVLW Trigger: CCACAGCACTTTCGAGTGGATGAAAGTGAAGAGGAACGCCCCCAAGAAAAGCAAACTGTCCGAATATGGAGCCACAAGCCCTCCCAGTGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS CAA 90 bp | GTGCGGATGGCACTGGGAGGGCTTGTGGCTCCATATTCGGACAGTTaGCTTTTCTTGGGGGCGTTCCTCTTCACTTTCATCCACTCGAAA | + |
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Preference number: 6 (lower is better) Translates to: VRMALGGLVAPYSDS*LFLGAFLFTFIHSK Trigger: TTTCGAGTGGATGAAAGTGAAGAGGAACGCCCCCAAGAAAAGCAAACTGTCCGAATATGGAGCCACAAGCCCTCCCAGTGCCATCCGCAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS GCA 72 bp | CACTGGGAGGGCTTGTGGCTCCATATTCGGACAGTTTaGTTTTCTTGGGGGCGTTCCTCTTCACTTTCATCC | + |
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Preference number: 6 (lower is better) Translates to: HWEGLWLHIRTV*FSWGRSSSLSS Trigger: GGATGAAAGTGAAGAGGAACGCCCCCAAGAAAAGCAAACTGTCCGAATATGGAGCCACAAGCCCTCCCAGTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS CAA 72 bp | GCACTGGGAGGGCTTGTGGCTCCATATTCGGACAGTTaGCTTTTCTTGGGGGCGTTCCTCTTCACTTTCATC | + |
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Preference number: 6 (lower is better) Translates to: ALGGLVAPYSDS*LFLGAFLFTFI Trigger: GATGAAAGTGAAGAGGAACGCCCCCAAGAAAAGCAAACTGTCCGAATATGGAGCCACAAGCCCTCCCAGTGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS CAA 72 bp | GGGCTTGTGGCTCCATATTCGGACAGTTTGCTTTTCTaGGGGGCGTTCCTCTTCACTTTCATCCACTCGAAA | + |
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Preference number: 6 (lower is better) Translates to: GLVAPYSDSLLF*GAFLFTFIHSK Trigger: TTTCGAGTGGATGAAAGTGAAGAGGAACGCCCCCAAGAAAAGCAAACTGTCCGAATATGGAGCCACAAGCCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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| CDS CAA 72 bp | CAGATTTTGACCTGGGTGTCATTCAGCTGTAAACAGTaGGCTATCTCGATGCGTCGGGCTCTAGTTAGGTAC | + |
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Preference number: 6 (lower is better) Translates to: QILTWVSFSCKQ*AISMRRALVRY Trigger: GTACCTAACTAGAGCCCGACGCATCGAGATAGCCAACTGTTTACAGCTGAATGACACCCAGGTCAAAATCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047793.6 |
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