Pregenerated sensors for HOXC9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036139Ensembl transcript IDs: ENSMUST00000001706.7
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GGCAGCAGCCTGCATTTGCAGCCTGATCCAGCCAGCAGCGCAGTCCGGCCCTCATTTTTGTGTTTCCCTTaGCTGTGCCGAGGCAGCAGG | + |
|
Preference number: 2 (lower is better) Translates to: GSSLHLQPDPASSAVRPSFLCFP*LCRGSR Trigger: CCTGCTGCCTCGGCACAGCCAAGGGAAACACAAAAA...TGAGGGCCGGACTGCGCTGCTGGCTGGATCAGGCTGCAAATGCAGGCTGCTGCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| 3UTR CAA 90 bp | GCCAGCAGCGCAGTCCGGCCCTCAGCTCTGGACTGGGGATCATCATaGTGTGTCTTTTTGTATGAAATCTGCCCGCAGAGCGCCCAAGGC | + |
|
Preference number: 2 (lower is better) Translates to: ASSAVRPSALDWGSS*CVFLYEICPQSAQG Trigger: GCCTTGGGCGCTCTGCGGGCAGATTTCATACAAAAAGACACACAATGATGATCCCCAGTCCAGAGCTGAGGGCCGGACTGCGCTGCTGGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| 3UTR-3UTR CCA 90 bp | AGCCTGCATTTGCAGCCTGATCCAGCCAGCAGCGCAGTCCGGCCCTCAGCTCTGCTGCCTCCTCCTCGATaGATAGAACTAACTCTAAAC | + |
|
Preference number: 2 (lower is better) Translates to: SLHLQPDPASSAVRPSALLPPPR*IELTLN Trigger: GTTTAGAGTTAGTTCTATCCATCGAGGAGGAGGCAG...CAGAGCTGAGGGCCGGACTGCGCTGCTGGCTGGATCAGGCTGCAAATGCAGGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| 3UTR CAA 90 bp | GTCCGGCCCTCAGCTCTGGACTGGGGATCATCATTGTGTGTCTTTTaGTATGAAATCTGCCCGCAGAGCGCCCAAGGCCCAGGAAGGAAT | + |
|
Preference number: 2 (lower is better) Translates to: VRPSALDWGSSLCVF*YEICPQSAQGPGRN Trigger: ATTCCTTCCTGGGCCTTGGGCGCTCTGCGGGCAGATTTCATACAAAAAGACACACAATGATGATCCCCAGTCCAGAGCTGAGGGCCGGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| 3UTR-3UTR GCA 90 bp | ACGGACGATGGGGAGGGACGCTGGGTTAAGAACACTGCTCTGTACATGCCTGAGGTCATTTATTTCAGTTaGGCTGGGGAAGAGAACGCA | + |
|
Preference number: 2 (lower is better) Translates to: TDDGEGRWVKNTALYMPEVIYFS*AGEENA Trigger: TGCGTTCTCTTCCCCAGCGCAACTGAAATAAATGAC...CTCAGGCATGTACAGAGCAGTGTTCTTAACCCAGCGTCCCTCCCCATCGTCCGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| 3UTR-3UTR GCA 90 bp | CCCAGACCAAATATGAGAGAGAGAGAGAGGGAGAGAGGGAGAGAGGGAGAGAGGCACATCGCAAGAGTTTaGATTTTTCCCCTTCCTTTT | + |
|
Preference number: 2 (lower is better) Translates to: PRPNMRERERERGREGERHIARV*IFPLPF Trigger: AAAAGGAAGGGGAAAAATGCAAACTCTTGCGATGTG...CCTCTCTCCCTCTCTCCCTCTCTCCCTCTCTCTCTCTCTCATATTTGGTCTGGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| 3UTR-3UTR CCA 90 bp | TTAGAGGATTTAAGCACTTGCCTCTTCGACAGAATCACAAGGAATAAAATGATGTCCGGCCCTCAGCTCTaGACTGGGGATCATCATTGT | + |
|
Preference number: 2 (lower is better) Translates to: LEDLSTCLFDRITRNKMMSGPQL*TGDHHC Trigger: ACAATGATGATCCCCAGTCCAGAGCTGAGGGCCGGA...CATCATTTTATTCCTTGTGATTCTGTCGAAGAGGCAAGTGCTTAAATCCTCTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| 3UTR TCA 72 bp | TGTACATGCCTGAGGCAGCAGCCTGCATTTGCAGCCTaGTCCAGCCAGCAGCGCAGTCCGGCCCTCAGCTCT | + |
|
Preference number: 3 (lower is better) Translates to: CTCLRQQPAFAA*SSQQRSPALSS Trigger: AGAGCTGAGGGCCGGACTGCGCTGCTGGCTGGATCAGGCTGCAAATGCAGGCTGCTGCCTCAGGCATGTACA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| 3UTR GCA 72 bp | ACTGCTCTGTACATGCCTGAGGCAGCAGCCTGCATTTaGAGCCTGATCCAGCCAGCAGCGCAGTCCGGCCCT | + |
|
Preference number: 3 (lower is better) Translates to: TALYMPEAAACI*SLIQPAAQSGP Trigger: AGGGCCGGACTGCGCTGCTGGCTGGATCAGGCTGCAAATGCAGGCTGCTGCCTCAGGCATGTACAGAGCAGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| 3UTR-3UTR CAA 90 bp | GGCAGCAGCCTGCATTTGCAGCCTGATCCAGCCAGCAGCGCAGTCCGGCCCTCATGTCATTTATTTCAGTaGCGCTGGGGAAGAGAACGC | + |
|
Preference number: 3 (lower is better) Translates to: GSSLHLQPDPASSAVRPSCHLFQ*RWGRER Trigger: GCGTTCTCTTCCCCAGCGCAACTGAAATAAATGACA...TGAGGGCCGGACTGCGCTGCTGGCTGGATCAGGCTGCAAATGCAGGCTGCTGCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| 3UTR CCA 72 bp | AATCTGCCCGCAGAGCGCCCAAGGCCCAGGAAGGAATaGCCCAGACCAAATATGAGAGAGAGAGAGAGGGAG | + |
|
Preference number: 3 (lower is better) Translates to: NLPAERPRPRKE*PRPNMRERERE Trigger: CTCCCTCTCTCTCTCTCTCATATTTGGTCTGGGCCATTCCTTCCTGGGCCTTGGGCGCTCTGCGGGCAGATT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| 3UTR CCA 72 bp | CTGATCCAGCCAGCAGCGCAGTCCGGCCCTCAGCTCTaGACTGGGGATCATCATTGTGTGTCTTTTTGTATG | + |
|
Preference number: 3 (lower is better) Translates to: LIQPAAQSGPQL*TGDHHCVSFCM Trigger: CATACAAAAAGACACACAATGATGATCCCCAGTCCAGAGCTGAGGGCCGGACTGCGCTGCTGGCTGGATCAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| 3UTR CCA 72 bp | CCAGCCAGCAGCGCAGTCCGGCCCTCAGCTCTGGACTaGGGATCATCATTGTGTGTCTTTTTGTATGAAATC | + |
|
Preference number: 3 (lower is better) Translates to: PASSAVRPSALD*GSSLCVFLYEI Trigger: GATTTCATACAAAAAGACACACAATGATGATCCCCAGTCCAGAGCTGAGGGCCGGACTGCGCTGCTGGCTGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| 3UTR-3UTR CAA 90 bp | CTGGACTGGGGATCATCATTGTGTGTCTTTTTGTATGAAATCTGCCCGCAGAGCGTTTTTGTGTTTCCCTaGGCTGTGCCGAGGCAGCAG | + |
|
Preference number: 3 (lower is better) Translates to: LDWGSSLCVFLYEICPQSVFVFP*AVPRQQ Trigger: CTGCTGCCTCGGCACAGCCAAGGGAAACACAAAAAC...GCTCTGCGGGCAGATTTCATACAAAAAGACACACAATGATGATCCCCAGTCCAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| 3UTR-3UTR CAA 90 bp | CTGGACTGGGGATCATCATTGTGTGTCTTTTTGTATGAAATCTGCCCGCAGAGCCCACATCGCAAGAGTTaGCATTTTTCCCCTTCCTTT | + |
|
Preference number: 3 (lower is better) Translates to: LDWGSSLCVFLYEICPQSPHRKS*HFSPSF Trigger: AAAGGAAGGGGAAAAATGCAAACTCTTGCGATGTGG...GCTCTGCGGGCAGATTTCATACAAAAAGACACACAATGATGATCCCCAGTCCAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| 3UTR GCA 72 bp | CTCTGGTTCCAGTTTCCCTTAGAGGATTTAAGCACTTaGCTCTTCGACAGAATCACAAGGAATAAAATGATG | + |
|
Preference number: 3 (lower is better) Translates to: LWFQFPLEDLST*LFDRITRNKMM Trigger: CATCATTTTATTCCTTGTGATTCTGTCGAAGAGGCAAGTGCTTAAATCCTCTAAGGGAAACTGGAACCAGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| CDS-3UTR CCA 90 bp | GCAGCAGCCTGCATTTGCAGCCTGATCCAGCCAGCAGCGCAGTCCGGCCCTCAGCCAAGCCGCTGGGTCTaGCGGCGGCAGGGTGAGCCC | + |
|
Preference number: 4 (lower is better) Translates to: AAACICSLIQPAAQSGPQPSRWV*RRQGEP Trigger: GGGCTCACCCTGCCGCCGCCAGACCCAGCGGCTTGG...CTGAGGGCCGGACTGCGCTGCTGGCTGGATCAGGCTGCAAATGCAGGCTGCTGC 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| CDS-3UTR CCA 90 bp | GCAGCAGCCTGCATTTGCAGCCTGATCCAGCCAGCAGCGCAGTCCGGCCCTCAGCCGGCACCAAGCCGCTaGGTCTGGCGGCGGCAGGGT | + |
|
Preference number: 4 (lower is better) Translates to: AAACICSLIQPAAQSGPQPAPSR*VWRRQG Trigger: ACCCTGCCGCCGCCAGACCCAGCGGCTTGGTGCCGG...CTGAGGGCCGGACTGCGCTGCTGGCTGGATCAGGCTGCAAATGCAGGCTGCTGC 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| CDS-3UTR TCA 90 bp | GCAGCAGCCTGCATTTGCAGCCTGATCCAGCCAGCAGCGCAGTCCGGCCCTCAGGGTAGGCGTCGGGCTTaGGGGCGTAGTGACGGCCCC | + |
|
Preference number: 4 (lower is better) Translates to: AAACICSLIQPAAQSGPQGRRRA*GRSDGP Trigger: GGGGCCGTCACTACGCCCTCAAGCCCGACGCCTACC...CTGAGGGCCGGACTGCGCTGCTGGCTGGATCAGGCTGCAAATGCAGGCTGCTGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| CDS-3UTR GCA 90 bp | GGCAGCAGCCTGCATTTGCAGCCTGATCCAGCCAGCAGCGCAGTCCGGCCCTCATCTCCTCTTTGTGCTTaGTGCCGGCCAGCGCGTCCG | + |
|
Preference number: 4 (lower is better) Translates to: GSSLHLQPDPASSAVRPSSPLCA*CRPARP Trigger: CGGACGCGCTGGCCGGCAGCAAGCACAAAGAGGAGA...TGAGGGCCGGACTGCGCTGCTGGCTGGATCAGGCTGCAAATGCAGGCTGCTGCC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| CDS-3UTR GCA 90 bp | ACGGACGATGGGGAGGGACGCTGGGTTAAGAACACTGCTCTGTACATGCCTGAGTGTAGTCCGGGTAGCTaGGGCCGTCGCCCGGGCCGC | + |
|
Preference number: 4 (lower is better) Translates to: TDDGEGRWVKNTALYMPECSPGS*GRRPGR Trigger: GCGGCCCGGGCGACGGCCGCAGCTACCCGGACTACA...CTCAGGCATGTACAGAGCAGTGTTCTTAACCCAGCGTCCCTCCCCATCGTCCGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| CDS-3UTR CCA 90 bp | AGCCTGCATTTGCAGCCTGATCCAGCCAGCAGCGCAGTCCGGCCCTCAGCTCTGCTTGTGGAACGGGCGTaGATCCAGTTGGCCACGGGG | + |
|
Preference number: 4 (lower is better) Translates to: SLHLQPDPASSAVRPSALLVERA*IQLATG Trigger: CCCCGTGGCCAACTGGATCCACGCCCGTTCCACAAG...CAGAGCTGAGGGCCGGACTGCGCTGCTGGCTGGATCAGGCTGCAAATGCAGGCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| CDS-3UTR CCA 90 bp | AGCCTGCATTTGCAGCCTGATCCAGCCAGCAGCGCAGTCCGGCCCTCAGCTCTGCGGTGGCCGGAAACCTaGACGCTAGGAGGTCTTCAT | + |
|
Preference number: 4 (lower is better) Translates to: SLHLQPDPASSAVRPSALRWPET*TLGGLH Trigger: ATGAAGACCTCCTAGCGTCCAGGTTTCCGGCCACCG...CAGAGCTGAGGGCCGGACTGCGCTGCTGGCTGGATCAGGCTGCAAATGCAGGCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| CDS-3UTR TCA 90 bp | TACTGTAACAAACAGAACAACATTACAGGACGACGGACGATGGGGAGGGACGCTCTGGCGGCGGCAGGGTaGGCCCCGGTGGCCGGAAAC | + |
|
Preference number: 4 (lower is better) Translates to: YCNKQNNITGRRTMGRDALAAAG*APVAGN Trigger: GTTTCCGGCCACCGGGGCTCACCCTGCCGCCGCCAG...AGCGTCCCTCCCCATCGTCCGTCGTCCTGTAATGTTGTTCTGTTTGTTACAGTA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| CDS-3UTR TCA 90 bp | CCCAGACCAAATATGAGAGAGAGAGAGAGGGAGAGAGGGAGAGAGGGAGAGAGGGCGCCCACGACGTACTaGATACAGCCGGCTTGGGCG | + |
|
Preference number: 4 (lower is better) Translates to: PRPNMRERERERGREGERAPTTY*IQPAWA Trigger: CGCCCAAGCCGGCTGTATTCAGTACGTCGTGGGCGC...CCTCTCTCCCTCTCTCCCTCTCTCCCTCTCTCTCTCTCTCATATTTGGTCTGGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| CDS-3UTR TCA 90 bp | GAGCGCCCAAGGCCCAGGAAGGAATGGCCCAGACCAAATATGAGAGAGAGAGAGCCACGTAATAGTTACTaGTGGGCCCCGTCGCCGACA | + |
|
Preference number: 4 (lower is better) Translates to: ERPRPRKEWPRPNMREREPRNSY*WAPSPT Trigger: TGTCGGCGACGGGGCCCATCAGTAACTATTACGTGG...CTCTCTCTCTCTCATATTTGGTCTGGGCCATTCCTTCCTGGGCCTTGGGCGCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| 3UTR CAA 72 bp | CCCATTCTGCCCTGCCTGAAGAGAAGCTGCAGGCATTaGCCCTTCCAAGGTAGAGGGAGCCCCTTCTCTGGT | + |
|
Preference number: 4 (lower is better) Translates to: PILPCLKRSCRH*PFQGRGSPFSG Trigger: ACCAGAGAAGGGGCTCCCTCTACCTTGGAAGGGCAAATGCCTGCAGCTTCTCTTCAGGCAGGGCAGAATGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| CDS-3UTR GCA 90 bp | CTGGACTGGGGATCATCATTGTGTGTCTTTTTGTATGAAATCTGCCCGCAGAGCGCCTTCTCCTCTTTGTaGTTGCTGCCGGCCAGCGCG | + |
|
Preference number: 4 (lower is better) Translates to: LDWGSSLCVFLYEICPQSAFSSL*LLPASA Trigger: CGCGCTGGCCGGCAGCAAGCACAAAGAGGAGAAGGC...GCTCTGCGGGCAGATTTCATACAAAAAGACACACAATGATGATCCCCAGTCCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| CDS-3UTR CCA 90 bp | TCAGCTCTGGACTGGGGATCATCATTGTGTGTCTTTTTGTATGAAATCTGCCCGCAGGGTGAGCCCCGGTaGCCGGAAACCTGGACGCTA | + |
|
Preference number: 4 (lower is better) Translates to: SALDWGSSLCVFLYEICPQGEPR*PETWTL Trigger: TAGCGTCCAGGTTTCCGGCCACCGGGGCTCACCCTG...CGGGCAGATTTCATACAAAAAGACACACAATGATGATCCCCAGTCCAGAGCTGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| 3UTR CAA 72 bp | GCAGTCCGGCCCTCAGCTCTGGACTGGGGATCATCATaGTGTGTCTTTTTGTATGAAATCTGCCCGCAGAGC | + |
|
Preference number: 4 (lower is better) Translates to: AVRPSALDWGSS*CVFLYEICPQS Trigger: GCTCTGCGGGCAGATTTCATACAAAAAGACACACAATGATGATCCCCAGTCCAGAGCTGAGGGCCGGACTGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| CDS-3UTR TCA 90 bp | AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTTTTCAAATACTGGCAGGTCTTCATTGTCGTaGGAGATGAGCGAGTCCACG | + |
|
Preference number: 4 (lower is better) Translates to: RERERERERERESFSNTGRSSLS*EMSEST Trigger: CGTGGACTCGCTCATCTCTCACGACAATGAAGACCT...GCCAGTATTTGAAAAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| CDS-3UTR TCA 90 bp | TTAGAGGATTTAAGCACTTGCCTCTTCGACAGAATCACAAGGAATAAAATGATGCATTGTCGTGAGAGATaGGCGAGTCCACGTAATAGT | + |
|
Preference number: 4 (lower is better) Translates to: LEDLSTCLFDRITRNKMMHCRER*ASPRNS Trigger: ACTATTACGTGGACTCGCTCATCTCTCACGACAATG...CATCATTTTATTCCTTGTGATTCTGTCGAAGAGGCAAGTGCTTAAATCCTCTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| CDS TCA 90 bp | TCGCTACAGTCCGGCACCAAGCCGCTGGGTCTGGCGGCGGCAGGGTaGGCCCCGGTGGCCGGAAACCTGGACGCTAGGAGGTCTTCATTG | + |
|
Preference number: 5 (lower is better) Translates to: SLQSGTKPLGLAAAG*APVAGNLDARRSSL Trigger: CAATGAAGACCTCCTAGCGTCCAGGTTTCCGGCCACCGGGGCTCACCCTGCCGCCGCCAGACCCAGCGGCTTGGTGCCGGACTGTAGCGA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| CDS CCA 90 bp | CCGGCACCAAGCCGCTGGGTCTGGCGGCGGCAGGGTGAGCCCCGGTaGCCGGAAACCTGGACGCTAGGAGGTCTTCATTGTCGTGAGAGA | + |
|
Preference number: 5 (lower is better) Translates to: PAPSRWVWRRQGEPR*PETWTLGGLHCRER Trigger: TCTCTCACGACAATGAAGACCTCCTAGCGTCCAGGTTTCCGGCCACCGGGGCTCACCCTGCCGCCGCCAGACCCAGCGGCTTGGTGCCGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| CDS CCA 90 bp | CGAAGCTACAGGACGGAAAATCGCTACAGTCCGGCACCAAGCCGCTaGGTCTGGCGGCGGCAGGGTGAGCCCCGGTGGCCGGAAACCTGG | + |
|
Preference number: 5 (lower is better) Translates to: RSYRTENRYSPAPSR*VWRRQGEPRWPETW Trigger: CCAGGTTTCCGGCCACCGGGGCTCACCCTGCCGCCGCCAGACCCAGCGGCTTGGTGCCGGACTGTAGCGATTTTCCGTCCTGTAGCTTCG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| CDS CCA 90 bp | TACAGGACGGAAAATCGCTACAGTCCGGCACCAAGCCGCTGGGTCTaGCGGCGGCAGGGTGAGCCCCGGTGGCCGGAAACCTGGACGCTA | + |
|
Preference number: 5 (lower is better) Translates to: YRTENRYSPAPSRWV*RRQGEPRWPETWTL Trigger: TAGCGTCCAGGTTTCCGGCCACCGGGGCTCACCCTGCCGCCGCCAGACCCAGCGGCTTGGTGCCGGACTGTAGCGATTTTCCGTCCTGTA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| CDS-3UTR CAA 90 bp | CCTGAGGCAGCAGCCTGCATTTGCAGCCTGATCCAGCCAGCAGCGCAGTCCGGCTGCCGCTCAGTGAGATaGAGAACACGGGCCACCTCG | + |
|
Preference number: 5 (lower is better) Translates to: PEAAACICSLIQPAAQSGCRSVR*RTRATS Trigger: CGAGGTGGCCCGTGTTCTCAATCTCACTGAGCGGCA...GCCGGACTGCGCTGCTGGCTGGATCAGGCTGCAAATGCAGGCTGCTGCCTCAGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| CDS TCA 90 bp | GATAGACCACAGACGACTGCGAGGGCACCGGCGCCCACGACGTACTaGATACAGCCGGCTTGGGCGCGAAGCTACAGGACGGAAAATCGC | + |
|
Preference number: 5 (lower is better) Translates to: DRPQTTARAPAPTTY*IQPAWARSYRTENR Trigger: GCGATTTTCCGTCCTGTAGCTTCGCGCCCAAGCCGGCTGTATTCAGTACGTCGTGGGCGCCGGTGCCCTCGCAGTCGTCTGTGGTCTATC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| CDS-3UTR CAA 90 bp | CTGCCTCCTCCTCGATGGATAGAACTAACTCTAAACACCAATTTCTCAACACTTCGGGCGTGGATCCAGTaGGCCACGGGGTTGCTAGGG | + |
|
Preference number: 5 (lower is better) Translates to: LPPPRWIELTLNTNFSTLRAWIQ*ATGLLG Trigger: CCCTAGCAACCCCGTGGCCAACTGGATCCACGCCCG...AAGTGTTGAGAAATTGGTGTTTAGAGTTAGTTCTATCCATCGAGGAGGAGGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| CDS-3UTR CAA 90 bp | ATTCACATTTGTGTGTGTCATTTATTTCAGTTGCGCTGGGGAAGAGAACGCAGTCTGAATACAGCCGGCTaGGGCGCGAAGCTACAGGAC | + |
|
Preference number: 5 (lower is better) Translates to: IHICVCHLFQLRWGRERSLNTAG*GAKLQD Trigger: GTCCTGTAGCTTCGCGCCCAAGCCGGCTGTATTCAG...ACTGCGTTCTCTTCCCCAGCGCAACTGAAATAAATGACACACACAAATGTGAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| CDS-3UTR CAA 90 bp | TTAGAGGATTTAAGCACTTGCCTCTTCGACAGAATCACAAGGAATAAAATGATGTTCTCCTCTTTGTGCTaGCTGCCGGCCAGCGCGTCC | + |
|
Preference number: 5 (lower is better) Translates to: LEDLSTCLFDRITRNKMMFSSLC*LPASAS Trigger: GGACGCGCTGGCCGGCAGCAAGCACAAAGAGGAGAA...CATCATTTTATTCCTTGTGATTCTGTCGAAGAGGCAAGTGCTTAAATCCTCTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| CDS-3UTR CAA 90 bp | TTAGAGGATTTAAGCACTTGCCTCTTCGACAGAATCACAAGGAATAAAATGATGGGCAGCGCTTCTTCCTaGTGGAACGGGCGTGGATCC | + |
|
Preference number: 5 (lower is better) Translates to: LEDLSTCLFDRITRNKMMGSASS*WNGRGS Trigger: GGATCCACGCCCGTTCCACAAGGAAGAAGCGCTGCC...CATCATTTTATTCCTTGTGATTCTGTCGAAGAGGCAAGTGCTTAAATCCTCTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| CDS TCA 72 bp | TCCGGCACCAAGCCGCTGGGTCTGGCGGCGGCAGGGTaGGCCCCGGTGGCCGGAAACCTGGACGCTAGGAGG | + |
|
Preference number: 6 (lower is better) Translates to: SGTKPLGLAAAG*APVAGNLDARR Trigger: CCTCCTAGCGTCCAGGTTTCCGGCCACCGGGGCTCACCCTGCCGCCGCCAGACCCAGCGGCTTGGTGCCGGA 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| CDS CCA 72 bp | AGGACGGAAAATCGCTACAGTCCGGCACCAAGCCGCTaGGTCTGGCGGCGGCAGGGTGAGCCCCGGTGGCCG | + |
|
Preference number: 6 (lower is better) Translates to: RTENRYSPAPSR*VWRRQGEPRWP Trigger: CGGCCACCGGGGCTCACCCTGCCGCCGCCAGACCCAGCGGCTTGGTGCCGGACTGTAGCGATTTTCCGTCCT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| CDS CAA 90 bp | CAGTTGGCCACGGGGTTGCTAGGGTCCAGGTCGGCCTTCTCCTCTTaGTGCTTGCTGCCGGCCAGCGCGTCCGCCTCGGGCGAGGGCAGC | + |
|
Preference number: 6 (lower is better) Translates to: QLATGLLGSRSAFSS*CLLPASASASGEGS Trigger: GCTGCCCTCGCCCGAGGCGGACGCGCTGGCCGGCAGCAAGCACAAAGAGGAGAAGGCCGACCTGGACCCTAGCAACCCCGTGGCCAACTG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| CDS CCA 72 bp | GAAAATCGCTACAGTCCGGCACCAAGCCGCTGGGTCTaGCGGCGGCAGGGTGAGCCCCGGTGGCCGGAAACC | + |
|
Preference number: 6 (lower is better) Translates to: ENRYSPAPSRWV*RRQGEPRWPET Trigger: GGTTTCCGGCCACCGGGGCTCACCCTGCCGCCGCCAGACCCAGCGGCTTGGTGCCGGACTGTAGCGATTTTC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| CDS CAA 72 bp | ACGGGGTTGCTAGGGTCCAGGTCGGCCTTCTCCTCTTaGTGCTTGCTGCCGGCCAGCGCGTCCGCCTCGGGC | + |
|
Preference number: 6 (lower is better) Translates to: TGLLGSRSAFSS*CLLPASASASG Trigger: GCCCGAGGCGGACGCGCTGGCCGGCAGCAAGCACAAAGAGGAGAAGGCCGACCTGGACCCTAGCAACCCCGT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| CDS CCA 72 bp | AGCCGCTGGGTCTGGCGGCGGCAGGGTGAGCCCCGGTaGCCGGAAACCTGGACGCTAGGAGGTCTTCATTGT | + |
|
Preference number: 6 (lower is better) Translates to: SRWVWRRQGEPR*PETWTLGGLHC Trigger: ACAATGAAGACCTCCTAGCGTCCAGGTTTCCGGCCACCGGGGCTCACCCTGCCGCCGCCAGACCCAGCGGCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| CDS TCA 72 bp | CAGACGACTGCGAGGGCACCGGCGCCCACGACGTACTaGATACAGCCGGCTTGGGCGCGAAGCTACAGGACG | + |
|
Preference number: 6 (lower is better) Translates to: QTTARAPAPTTY*IQPAWARSYRT Trigger: CGTCCTGTAGCTTCGCGCCCAAGCCGGCTGTATTCAGTACGTCGTGGGCGCCGGTGCCCTCGCAGTCGTCTG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| CDS CAA 90 bp | GACTGCGAGGGCACCGGCGCCCACGACGTACTGAATACAGCCGGCTaGGGCGCGAAGCTACAGGACGGAAAATCGCTACAGTCCGGCACC | + |
|
Preference number: 6 (lower is better) Translates to: DCEGTGAHDVLNTAG*GAKLQDGKSLQSGT Trigger: GGTGCCGGACTGTAGCGATTTTCCGTCCTGTAGCTTCGCGCCCAAGCCGGCTGTATTCAGTACGTCGTGGGCGCCGGTGCCCTCGCAGTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||
| CDS CAA 72 bp | GGCACCGGCGCCCACGACGTACTGAATACAGCCGGCTaGGGCGCGAAGCTACAGGACGGAAAATCGCTACAG | + |
|
Preference number: 6 (lower is better) Translates to: GTGAHDVLNTAG*GAKLQDGKSLQ Trigger: CTGTAGCGATTTTCCGTCCTGTAGCTTCGCGCCCAAGCCGGCTGTATTCAGTACGTCGTGGGCGCCGGTGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001706.7 |
||