Pregenerated sensors for HOXC8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001657Ensembl transcript IDs: ENSMUST00000001703.8
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGGGAAGGGCTCAGAAGGTGGGAGCAGGAACAAGAGAGTGTATGCTaGGCATGGAGTAGAACAGAACTTTTCCCTGTGTCTCAGGTTCCC | + |
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Preference number: 1 (lower is better) Translates to: GEGLRRWEQEQESVC*AWSRTELFPVSQVP Trigger: GGGAACCTGAGACACAGGGAAAAGTTCTGTTCTACTCCATGCCCAGCATACACTCTCTTGTTCCTGCTCCCACCTTCTGAGCCCTTCCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| 3UTR GCA 90 bp | TATGGGGAAGGGCTCAGAAGGTGGGAGCAGGAACAAGAGAGTGTATaGTGGGCATGGAGTAGAACAGAACTTTTCCCTGTGTCTCAGGTT | + |
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Preference number: 1 (lower is better) Translates to: YGEGLRRWEQEQESV*WAWSRTELFPVSQV Trigger: AACCTGAGACACAGGGAAAAGTTCTGTTCTACTCCATGCCCAGCATACACTCTCTTGTTCCTGCTCCCACCTTCTGAGCCCTTCCCCATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| 3UTR TCA 90 bp | GAGTGGGGGAAGCCCAAAGGTAATAAAAGCAGAGCTGCAACTATCTaGCAGGTAGTTAGAGTTGTGAGTGTCATTCTATTCTCTATAAAA | + |
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Preference number: 1 (lower is better) Translates to: EWGKPKGNKSRAATI*QVVRVVSVILFSIK Trigger: TTTTATAGAGAATAGAATGACACTCACAACTCTAACTACCTGTCAGATAGTTGCAGCTCTGCTTTTATTACCTTTGGGCTTCCCCCACTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| 3UTR-3UTR TCA 90 bp | GGCTCAGAAGGTGGGAGCAGGAACAAGAGAGTGTATGCTGGGCATGGAGTAGAAAGAGCTGCAACTATCTaGCAGGTAGTTAGAGTTGTG | + |
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Preference number: 2 (lower is better) Translates to: GSEGGSRNKRVYAGHGVERAATI*QVVRVV Trigger: CACAACTCTAACTACCTGTCAGATAGTTGCAGCTCT...TTCTACTCCATGCCCAGCATACACTCTCTTGTTCCTGCTCCCACCTTCTGAGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| 3UTR-3UTR GCA 90 bp | CGTGAAGAGGGAGTGTGGAGAGAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAACAAGAGAGTGTATaGTGGGCATGGAGTAGAACA | + |
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Preference number: 2 (lower is better) Translates to: REEGVWREVCVCVCVCVCEQESV*WAWSRT Trigger: TGTTCTACTCCATGCCCAGCATACACTCTCTTGTTC...ACACACACACACACACACACACACACACACTTCTCTCCACACTCCCTCTTCACG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| 3UTR-3UTR CCA 90 bp | GTGTGTGAAGGGTTAGACTTTATGGGGAAGGGCTCAGAAGGTGGGAGCAGGAACCAGACAAATAAAGAGTaGGGGAAGCCCAAAGGTAAT | + |
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Preference number: 2 (lower is better) Translates to: VCEGLDFMGKGSEGGSRNQTNKE*GKPKGN Trigger: ATTACCTTTGGGCTTCCCCCACTCTTTATTTGTCTG...GTTCCTGCTCCCACCTTCTGAGCCCTTCCCCATAAAGTCTAACCCTTCACACAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| 3UTR-3UTR CCA 90 bp | ACCGTGAAGAGGGAGTGTGGAGAGAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGTGTATGCTGGGCATaGAGTAGAACAGAACTTTTC | + |
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Preference number: 2 (lower is better) Translates to: TVKRECGEKCVCVCVCVCSVCWA*SRTELF Trigger: GAAAAGTTCTGTTCTACTCCATGCCCAGCATACACT...ACACACACACACACACACACACACACACTTCTCTCCACACTCCCTCTTCACGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| 3UTR-3UTR CCA 90 bp | CATCTCCTTGATTTCCAGCAGATTCCTGGAGAAAGTCAAGGGGGTTTTTCTAAGGAAGGGCTCAGAAGGTaGGAGCAGGAACAAGAGAGT | + |
|
Preference number: 2 (lower is better) Translates to: HLLDFQQIPGESQGGFSKEGLRR*EQEQES Trigger: ACTCTCTTGTTCCTGCTCCCACCTTCTGAGCCCTTC...CTTAGAAAAACCCCCTTGACTTTCTCCAGGAATCTGCTGGAAATCAAGGAGATG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| 3UTR-3UTR CCA 90 bp | GTGACTATGGGATGGATAGGTAGGATTTCAGAGACCATTGCCAGTTCTAATAGACGTGAAGAGGGAGTGTaGAGAGAAGTGTGTGTGTGT | + |
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Preference number: 2 (lower is better) Translates to: VTMGWIGRISETIASSNRREEGV*REVCVC Trigger: ACACACACACACTTCTCTCCACACTCCCTCTTCACG...TCTATTAGAACTGGCAATGGTCTCTGAAATCCTACCTATCCATCCCATAGTCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| 3UTR GCA 72 bp | GGGCTCAGAAGGTGGGAGCAGGAACAAGAGAGTGTATaGTGGGCATGGAGTAGAACAGAACTTTTCCCTGTG | + |
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Preference number: 3 (lower is better) Translates to: GLRRWEQEQESV*WAWSRTELFPV Trigger: CACAGGGAAAAGTTCTGTTCTACTCCATGCCCAGCATACACTCTCTTGTTCCTGCTCCCACCTTCTGAGCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| 3UTR TCA 72 bp | TCAGGAAGGAGGTGGGTAGAGAAACCCACATCTCCTTaGTTTCCAGCAGATTCCTGGAGAAAGTCAAGGGGG | + |
|
Preference number: 3 (lower is better) Translates to: SGRRWVEKPTSP*FPADSWRKSRG Trigger: CCCCCTTGACTTTCTCCAGGAATCTGCTGGAAATCAAGGAGATGTGGGTTTCTCTACCCACCTCCTTCCTGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| 3UTR-3UTR CAA 90 bp | GTGACTATGGGATGGATAGGTAGGATTTCAGAGACCATTGCCAGTTCTAATAGAGAAACCCACATCTCCTaGATTTCCAGCAGATTCCTG | + |
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Preference number: 3 (lower is better) Translates to: VTMGWIGRISETIASSNRETHIS*ISSRFL Trigger: CAGGAATCTGCTGGAAATCAAGGAGATGTGGGTTTC...TCTATTAGAACTGGCAATGGTCTCTGAAATCCTACCTATCCATCCCATAGTCAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS-3UTR GCA 90 bp | TGTGAAGGGTTAGACTTTATGGGGAAGGGCTCAGAAGGTGGGAGCAGGAACAAGACGTGGTGCGAGGCGTaGTGGAAACCGGGCGCGGAG | + |
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Preference number: 4 (lower is better) Translates to: CEGLDFMGKGSEGGSRNKTWCEA*WKPGAE Trigger: CTCCGCGCCCGGTTTCCAGCACGCCTCGCACCACGT...CTTGTTCCTGCTCCCACCTTCTGAGCCCTTCCCCATAAAGTCTAACCCTTCACA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS-3UTR TCA 90 bp | GTGTGTGAAGGGTTAGACTTTATGGGGAAGGGCTCAGAAGGTGGGAGCAGGAACGTCAGTCCCAGGGCGTaGGAGACTTCAATCCGGCGC | + |
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Preference number: 4 (lower is better) Translates to: VCEGLDFMGKGSEGGSRNVSPRA*ETSIRR Trigger: GCGCCGGATTGAAGTCTCTCACGCCCTGGGACTGAC...GTTCCTGCTCCCACCTTCTGAGCCCTTCCCCATAAAGTCTAACCCTTCACACAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS-3UTR CCA 90 bp | GTGTGTGAAGGGTTAGACTTTATGGGGAAGGGCTCAGAAGGTGGGAGCAGGAACTTGGAGGCGTCTCCGTaGCAGCTCAGCGAGCATGGG | + |
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Preference number: 4 (lower is better) Translates to: VCEGLDFMGKGSEGGSRNLEASP*QLSEHG Trigger: CCCATGCTCGCTGAGCTGCCACGGAGACGCCTCCAA...GTTCCTGCTCCCACCTTCTGAGCCCTTCCCCATAAAGTCTAACCCTTCACACAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS-3UTR GCA 90 bp | CGTGAAGAGGGAGTGTGGAGAGAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCCCGAGTTGGAGATaGCGGAGGTGCCGTGGTGGA | + |
|
Preference number: 4 (lower is better) Translates to: REEGVWREVCVCVCVCVCSPSWR*RRCRGG Trigger: TCCACCACGGCACCTCCGGCATCTCCAACTCGGGCT...ACACACACACACACACACACACACACACACTTCTCTCCACACTCCCTCTTCACG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS-3UTR CCA 90 bp | ACCGTGAAGAGGGAGTGTGGAGAGAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCGGAGGTGCCGTGGTaGAAGAAGTCTTGGACGTGG | + |
|
Preference number: 4 (lower is better) Translates to: TVKRECGEKCVCVCVCVCPEVPW*KKSWTW Trigger: CCACGTCCAAGACTTCTTCCACCACGGCACCTCCGG...ACACACACACACACACACACACACACACTTCTCTCCACACTCCCTCTTCACGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS-3UTR CCA 90 bp | TGTGGAGAGAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCCGCCCAGGAGCGTaGGGTCTCATCCATGGAAAC | + |
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Preference number: 4 (lower is better) Translates to: CGEKCVCVCVCVCVCVCVRRPGA*GLIHGN Trigger: GTTTCCATGGATGAGACCCCACGCTCCTGGGCGGCG...CACACACACACACACACACACACACACACACACACACACACACTTCTCTCCACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS-3UTR GCA 90 bp | GGCTCAGAAGGTGGGAGCAGGAACAAGAGAGTGTATGCTGGGCATGGAGTAGAATGGAGATGCCGGAGGTaGCGTGGTGGAAGAAGTCTT | + |
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Preference number: 4 (lower is better) Translates to: GSEGGSRNKRVYAGHGVEWRCRR*RGGRSL Trigger: AAGACTTCTTCCACCACGGCACCTCCGGCATCTCCA...TTCTACTCCATGCCCAGCATACACTCTCTTGTTCCTGCTCCCACCTTCTGAGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS-3UTR CCA 90 bp | ATGGGGAAGGGCTCAGAAGGTGGGAGCAGGAACAAGAGAGTGTATGCTGGGCATAAGAAGTCTTGGACGTaGTGCGAGGCGTGCTGGAAA | + |
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Preference number: 4 (lower is better) Translates to: MGKGSEGGSRNKRVYAGHKKSWT*CEACWK Trigger: TTTCCAGCACGCCTCGCACCACGTCCAAGACTTCTT...ATGCCCAGCATACACTCTCTTGTTCCTGCTCCCACCTTCTGAGCCCTTCCCCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS-3UTR CCA 90 bp | ACCGTGAAGAGGGAGTGTGGAGAGAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGCCGGAGGTGCCGTaGTGGAAGAAGTCTTGGACG | + |
|
Preference number: 4 (lower is better) Translates to: TVKRECGEKCVCVCVCVCMPEVP*WKKSWT Trigger: CGTCCAAGACTTCTTCCACCACGGCACCTCCGGCAT...ACACACACACACACACACACACACACACTTCTCTCCACACTCCCTCTTCACGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS-3UTR GCA 90 bp | GGCTCAGAAGGTGGGAGCAGGAACAAGAGAGTGTATGCTGGGCATGGAGTAGAATTACAGTCGGGATATTaGACCACGCTCGCCTCTTGC | + |
|
Preference number: 4 (lower is better) Translates to: GSEGGSRNKRVYAGHGVELQSGY*TTLASC Trigger: GCAAGAGGCGAGCGTGGTGCAATATCCCGACTGTAA...TTCTACTCCATGCCCAGCATACACTCTCTTGTTCCTGCTCCCACCTTCTGAGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS-3UTR CCA 90 bp | CGTGAAGAGGGAGTGTGGAGAGAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCATAAAGGGACTGTCTaGGGAGCGCCTCGTAGCCAT | + |
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Preference number: 4 (lower is better) Translates to: REEGVWREVCVCVCVCVCHKGTV*GAPRSH Trigger: ATGGCTACGAGGCGCTCCCCAGACAGTCCCTTTATG...ACACACACACACACACACACACACACACACTTCTCTCCACACTCCCTCTTCACG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS-3UTR CCA 90 bp | TGTGTGTGTGAAGGGTTAGACTTTATGGGGAAGGGCTCAGAAGGTGGGAGCAGGGTGGGGTCTCATCCATaGAAACATGAGGCTGGGAGA | + |
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Preference number: 4 (lower is better) Translates to: CVCEGLDFMGKGSEGGSRVGSHP*KHEAGR Trigger: TCTCCCAGCCTCATGTTTCCATGGATGAGACCCCAC...CCTGCTCCCACCTTCTGAGCCCTTCCCCATAAAGTCTAACCCTTCACACACACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS-3UTR CCA 90 bp | CATCTCCTTGATTTCCAGCAGATTCCTGGAGAAAGTCAAGGGGGTTTTTCTAAGGCTGGTAGCCCGAGTTaGAGATGCCGGAGGTGCCGT | + |
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Preference number: 4 (lower is better) Translates to: HLLDFQQIPGESQGGFSKAGSPS*RCRRCR Trigger: ACGGCACCTCCGGCATCTCCAACTCGGGCTACCAGC...CTTAGAAAAACCCCCTTGACTTTCTCCAGGAATCTGCTGGAAATCAAGGAGATG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS-3UTR TCA 90 bp | CTCAGAAGGTGGGAGCAGGAACAAGAGAGTGTATGCTGGGCATGGAGTAGAACACTGGGAGACGAGTTCTaGTTTAAGTGGCCTTGTCCT | + |
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Preference number: 4 (lower is better) Translates to: LRRWEQEQESVCWAWSRTLGDEF*FKWPCP Trigger: AGGACAAGGCCACTTAAATCAGAACTCGTCTCCCAG...TGTTCTACTCCATGCCCAGCATACACTCTCTTGTTCCTGCTCCCACCTTCTGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS-3UTR CCA 90 bp | GTGACTATGGGATGGATAGGTAGGATTTCAGAGACCATTGCCAGTTCTAATAGACGTAGCCATAGAATTTaGAGGCGTCTCCGTGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: VTMGWIGRISETIASSNRRSHRI*RRLRGS Trigger: GCTGCCACGGAGACGCCTCCAAATTCTATGGCTACG...TCTATTAGAACTGGCAATGGTCTCTGAAATCCTACCTATCCATCCCATAGTCAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS-3UTR CCA 90 bp | CGTAAACTTCTCAATTTATCTGCTACCATAAAACGAAACTTCAAGGGAGTTGCTGCAGCTCAGCGAGCATaGGTTCTGCTGGTAGCCCGA | + |
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Preference number: 4 (lower is better) Translates to: RKLLNLSATIKRNFKGVAAAQRA*VLLVAR Trigger: TCGGGCTACCAGCAGAACCCATGCTCGCTGAGCTGC...AGCAACTCCCTTGAAGTTTCGTTTTATGGTAGCAGATAAATTGAGAAGTTTACG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS-3UTR GCA 90 bp | CGTAAACTTCTCAATTTATCTGCTACCATAAAACGAAACTTCAAGGGAGTTGCTAAGTCTTGGACGTGGTaGGAGGCGTGCTGGAAACCG | + |
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Preference number: 4 (lower is better) Translates to: RKLLNLSATIKRNFKGVAKSWTW*EACWKP Trigger: CGGTTTCCAGCACGCCTCGCACCACGTCCAAGACTT...AGCAACTCCCTTGAAGTTTCGTTTTATGGTAGCAGATAAATTGAGAAGTTTACG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS-3UTR CCA 90 bp | CGTAAACTTCTCAATTTATCTGCTACCATAAAACGAAACTTCAAGGGAGTTGCTTGGTGGAAGAAGTCTTaGACGTGGTGCGAGGCGTGC | + |
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Preference number: 4 (lower is better) Translates to: RKLLNLSATIKRNFKGVAWWKKS*TWCEAC Trigger: GCACGCCTCGCACCACGTCCAAGACTTCTTCCACCA...AGCAACTCCCTTGAAGTTTCGTTTTATGGTAGCAGATAAATTGAGAAGTTTACG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS CCA 90 bp | GAGTTGGAGATGCCGGAGGTGCCGTGGTGGAAGAAGTCTTGGACGTaGTGCGAGGCGTGCTGGAAACCGGGCGCGGAGCCGCCGGGCCCG | + |
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Preference number: 5 (lower is better) Translates to: ELEMPEVPWWKKSWT*CEACWKPGAEPPGP Trigger: CGGGCCCGGCGGCTCCGCGCCCGGTTTCCAGCACGCCTCGCACCACGTCCAAGACTTCTTCCACCACGGCACCTCCGGCATCTCCAACTC 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS GCA 90 bp | TTGGAGATGCCGGAGGTGCCGTGGTGGAAGAAGTCTTGGACGTGGTaGGAGGCGTGCTGGAAACCGGGCGCGGAGCCGCCGGGCCCGTAC | + |
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Preference number: 5 (lower is better) Translates to: LEMPEVPWWKKSWTW*EACWKPGAEPPGPY Trigger: GTACGGGCCCGGCGGCTCCGCGCCCGGTTTCCAGCACGCCTCGCACCACGTCCAAGACTTCTTCCACCACGGCACCTCCGGCATCTCCAA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS GCA 90 bp | GCGAGCATGGGTTCTGCTGGTAGCCCGAGTTGGAGATGCCGGAGGTaGCGTGGTGGAAGAAGTCTTGGACGTGGTGCGAGGCGTGCTGGA | + |
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Preference number: 5 (lower is better) Translates to: ASMGSAGSPSWRCRR*RGGRSLGRGARRAG Trigger: TCCAGCACGCCTCGCACCACGTCCAAGACTTCTTCCACCACGGCACCTCCGGCATCTCCAACTCGGGCTACCAGCAGAACCCATGCTCGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS GCA 90 bp | GGCAGCTCAGCGAGCATGGGTTCTGCTGGTAGCCCGAGTTGGAGATaGCGGAGGTGCCGTGGTGGAAGAAGTCTTGGACGTGGTGCGAGG | + |
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Preference number: 5 (lower is better) Translates to: GSSASMGSAGSPSWR*RRCRGGRSLGRGAR Trigger: CCTCGCACCACGTCCAAGACTTCTTCCACCACGGCACCTCCGGCATCTCCAACTCGGGCTACCAGCAGAACCCATGCTCGCTGAGCTGCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS CCA 90 bp | CTCCGTGGCAGCTCAGCGAGCATGGGTTCTGCTGGTAGCCCGAGTTaGAGATGCCGGAGGTGCCGTGGTGGAAGAAGTCTTGGACGTGGT | + |
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Preference number: 5 (lower is better) Translates to: LRGSSASMGSAGSPS*RCRRCRGGRSLGRG Trigger: ACCACGTCCAAGACTTCTTCCACCACGGCACCTCCGGCATCTCCAACTCGGGCTACCAGCAGAACCCATGCTCGCTGAGCTGCCACGGAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS CCA 90 bp | ATTGCACCACGCTCGCCTCTTGCTGAGCCCCATAAAGGGACTGTCTaGGGAGCGCCTCGTAGCCATAGAATTTGGAGGCGTCTCCGTGGC | + |
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Preference number: 5 (lower is better) Translates to: IAPRSPLAEPHKGTV*GAPRSHRIWRRLRG Trigger: GCCACGGAGACGCCTCCAAATTCTATGGCTACGAGGCGCTCCCCAGACAGTCCCTTTATGGGGCTCAGCAAGAGGCGAGCGTGGTGCAAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS-3UTR CAA 90 bp | GGCTCAGAAGGTGGGAGCAGGAACAAGAGAGTGTATGCTGGGCATGGAGTAGAAGTGGTGGAAGAAGTCTaGGACGTGGTGCGAGGCGTG | + |
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Preference number: 5 (lower is better) Translates to: GSEGGSRNKRVYAGHGVEVVEEV*DVVRGV Trigger: CACGCCTCGCACCACGTCCAAGACTTCTTCCACCAC...TTCTACTCCATGCCCAGCATACACTCTCTTGTTCCTGCTCCCACCTTCTGAGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS-3UTR CAA 90 bp | CGTGAAGAGGGAGTGTGGAGAGAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATACCGGCTGTAAGTTaGTCGACCGCTGCGCCGCCC | + |
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Preference number: 5 (lower is better) Translates to: REEGVWREVCVCVCVCVCIPAVS*STAAPP Trigger: GGGCGGCGCAGCGGTCGACAAACTTACAGCCGGTAT...ACACACACACACACACACACACACACACACTTCTCTCCACACTCCCTCTTCACG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS-3UTR CAA 90 bp | ACCGTGAAGAGGGAGTGTGGAGAGAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTCACCACGCTCGCCTCTaGCTGAGCCCCATAAAGGGA | + |
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Preference number: 5 (lower is better) Translates to: TVKRECGEKCVCVCVCVCHHARL*LSPIKG Trigger: TCCCTTTATGGGGCTCAGCAAGAGGCGAGCGTGGTG...ACACACACACACACACACACACACACACTTCTCTCCACACTCCCTCTTCACGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS-3UTR CAA 90 bp | TGTGTGTGTGAAGGGTTAGACTTTATGGGGAAGGGCTCAGAAGGTGGGAGCAGGTCGCCGCCTTTGTATTaGGAAAACAGGGGGTTGACG | + |
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Preference number: 5 (lower is better) Translates to: CVCEGLDFMGKGSEGGSRSPPLY*ENRGLT Trigger: CGTCAACCCCCTGTTTTCCAAATACAAAGGCGGCGA...CCTGCTCCCACCTTCTGAGCCCTTCCCCATAAAGTCTAACCCTTCACACACACA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS-3UTR CAA 90 bp | ACCGTGAAGAGGGAGTGTGGAGAGAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGGGACTCGCCGCCTTaGTATTTGGAAAACAGGGGG | + |
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Preference number: 5 (lower is better) Translates to: TVKRECGEKCVCVCVCVCRDSPP*YLENRG Trigger: CCCCCTGTTTTCCAAATACAAAGGCGGCGAGTCCCT...ACACACACACACACACACACACACACACTTCTCTCCACACTCCCTCTTCACGGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS-3UTR CAA 90 bp | CTCAGAAGGTGGGAGCAGGAACAAGAGAGTGTATGCTGGGCATGGAGTAGAACATTTACAGTCGGGATATaGCACCACGCTCGCCTCTTG | + |
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Preference number: 5 (lower is better) Translates to: LRRWEQEQESVCWAWSRTFTVGI*HHARLL Trigger: CAAGAGGCGAGCGTGGTGCAATATCCCGACTGTAAA...TGTTCTACTCCATGCCCAGCATACACTCTCTTGTTCCTGCTCCCACCTTCTGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS-3UTR CAA 90 bp | TGTGAAGGGTTAGACTTTATGGGGAAGGGCTCAGAAGGTGGGAGCAGGAACAAGTCGCTACTGTTAGTGTaGGCGGAGGATTTACAGTCG | + |
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Preference number: 5 (lower is better) Translates to: CEGLDFMGKGSEGGSRNKSLLLV*AEDLQS Trigger: CGACTGTAAATCCTCCGCCAACACTAACAGTAGCGA...CTTGTTCCTGCTCCCACCTTCTGAGCCCTTCCCCATAAAGTCTAACCCTTCACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS-3UTR CAA 90 bp | GTGACTATGGGATGGATAGGTAGGATTTCAGAGACCATTGCCAGTTCTAATAGACCAGGCAGTTTATCCTaGTTGTTCTCCTTTTTCCAC | + |
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Preference number: 5 (lower is better) Translates to: VTMGWIGRISETIASSNRPGSLS*LFSFFH Trigger: GTGGAAAAAGGAGAACAACAAGGATAAACTGCCTGG...TCTATTAGAACTGGCAATGGTCTCTGAAATCCTACCTATCCATCCCATAGTCAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS GCA 72 bp | CCGTGGTGGAAGAAGTCTTGGACGTGGTGCGAGGCGTaGTGGAAACCGGGCGCGGAGCCGCCGGGCCCGTAC | + |
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Preference number: 6 (lower is better) Translates to: PWWKKSWTWCEA*WKPGAEPPGPY Trigger: GTACGGGCCCGGCGGCTCCGCGCCCGGTTTCCAGCACGCCTCGCACCACGTCCAAGACTTCTTCCACCACGG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS GCA 72 bp | CCGGAGGTGCCGTGGTGGAAGAAGTCTTGGACGTGGTaGGAGGCGTGCTGGAAACCGGGCGCGGAGCCGCCG | + |
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Preference number: 6 (lower is better) Translates to: PEVPWWKKSWTW*EACWKPGAEPP Trigger: CGGCGGCTCCGCGCCCGGTTTCCAGCACGCCTCGCACCACGTCCAAGACTTCTTCCACCACGGCACCTCCGG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS CCA 72 bp | TGGTGGAAGAAGTCTTGGACGTGGTGCGAGGCGTGCTaGAAACCGGGCGCGGAGCCGCCGGGCCCGTACACC | + |
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Preference number: 6 (lower is better) Translates to: WWKKSWTWCEAC*KPGAEPPGPYT Trigger: GGTGTACGGGCCCGGCGGCTCCGCGCCCGGTTTCCAGCACGCCTCGCACCACGTCCAAGACTTCTTCCACCA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS CAA 90 bp | GTAGCCCGAGTTGGAGATGCCGGAGGTGCCGTGGTGGAAGAAGTCTaGGACGTGGTGCGAGGCGTGCTGGAAACCGGGCGCGGAGCCGCC | + |
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Preference number: 6 (lower is better) Translates to: VARVGDAGGAVVEEV*DVVRGVLETGRGAA Trigger: GGCGGCTCCGCGCCCGGTTTCCAGCACGCCTCGCACCACGTCCAAGACTTCTTCCACCACGGCACCTCCGGCATCTCCAACTCGGGCTAC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS CCA 72 bp | ATGCCGGAGGTGCCGTGGTGGAAGAAGTCTTGGACGTaGTGCGAGGCGTGCTGGAAACCGGGCGCGGAGCCG | + |
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Preference number: 6 (lower is better) Translates to: MPEVPWWKKSWT*CEACWKPGAEP Trigger: CGGCTCCGCGCCCGGTTTCCAGCACGCCTCGCACCACGTCCAAGACTTCTTCCACCACGGCACCTCCGGCAT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS CCA 72 bp | TTGGAGATGCCGGAGGTGCCGTGGTGGAAGAAGTCTTaGACGTGGTGCGAGGCGTGCTGGAAACCGGGCGCG | + |
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Preference number: 6 (lower is better) Translates to: LEMPEVPWWKKS*TWCEACWKPGA Trigger: CGCGCCCGGTTTCCAGCACGCCTCGCACCACGTCCAAGACTTCTTCCACCACGGCACCTCCGGCATCTCCAA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS CAA 72 bp | GTTGGAGATGCCGGAGGTGCCGTGGTGGAAGAAGTCTaGGACGTGGTGCGAGGCGTGCTGGAAACCGGGCGC | + |
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Preference number: 6 (lower is better) Translates to: VGDAGGAVVEEV*DVVRGVLETGR Trigger: GCGCCCGGTTTCCAGCACGCCTCGCACCACGTCCAAGACTTCTTCCACCACGGCACCTCCGGCATCTCCAAC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS GCA 72 bp | GGTTCTGCTGGTAGCCCGAGTTGGAGATGCCGGAGGTaGCGTGGTGGAAGAAGTCTTGGACGTGGTGCGAGG | + |
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Preference number: 6 (lower is better) Translates to: GSAGSPSWRCRR*RGGRSLGRGAR Trigger: CCTCGCACCACGTCCAAGACTTCTTCCACCACGGCACCTCCGGCATCTCCAACTCGGGCTACCAGCAGAACC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS CCA 72 bp | GGGACTGTCTGGGGAGCGCCTCGTAGCCATAGAATTTaGAGGCGTCTCCGTGGCAGCTCAGCGAGCATGGGT | + |
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Preference number: 6 (lower is better) Translates to: GTVWGAPRSHRI*RRLRGSSASMG Trigger: ACCCATGCTCGCTGAGCTGCCACGGAGACGCCTCCAAATTCTATGGCTACGAGGCGCTCCCCAGACAGTCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS GCA 72 bp | GCGAGCATGGGTTCTGCTGGTAGCCCGAGTTGGAGATaGCGGAGGTGCCGTGGTGGAAGAAGTCTTGGACGT | + |
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Preference number: 6 (lower is better) Translates to: ASMGSAGSPSWR*RRCRGGRSLGR Trigger: ACGTCCAAGACTTCTTCCACCACGGCACCTCCGGCATCTCCAACTCGGGCTACCAGCAGAACCCATGCTCGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS GCA 72 bp | CCAAGGTCTGATACCGGCTGTAAGTTTGTCGACCGCTaGGCCGCCCAGGAGCGTGGGGTCTCATCCATGGAA | + |
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Preference number: 6 (lower is better) Translates to: PRSDTGCKFVDR*AAQERGVSSME Trigger: TTCCATGGATGAGACCCCACGCTCCTGGGCGGCGCAGCGGTCGACAAACTTACAGCCGGTATCAGACCTTGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS CCA 72 bp | GAATTTGGAGGCGTCTCCGTGGCAGCTCAGCGAGCATaGGTTCTGCTGGTAGCCCGAGTTGGAGATGCCGGA | + |
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Preference number: 6 (lower is better) Translates to: EFGGVSVAAQRA*VLLVARVGDAG Trigger: TCCGGCATCTCCAACTCGGGCTACCAGCAGAACCCATGCTCGCTGAGCTGCCACGGAGACGCCTCCAAATTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS CCA 72 bp | CGCTCGCCTCTTGCTGAGCCCCATAAAGGGACTGTCTaGGGAGCGCCTCGTAGCCATAGAATTTGGAGGCGT | + |
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Preference number: 6 (lower is better) Translates to: RSPLAEPHKGTV*GAPRSHRIWRR Trigger: ACGCCTCCAAATTCTATGGCTACGAGGCGCTCCCCAGACAGTCCCTTTATGGGGCTCAGCAAGAGGCGAGCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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| CDS TCA 72 bp | CTCATCCATGGAAACATGAGGCTGGGAGACGAGTTCTaGTTTAAGTGGCCTTGTCCTTCGCTACTGTTAGTG | + |
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Preference number: 6 (lower is better) Translates to: LIHGNMRLGDEF*FKWPCPSLLLV Trigger: CACTAACAGTAGCGAAGGACAAGGCCACTTAAATCAGAACTCGTCTCCCAGCCTCATGTTTCCATGGATGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001703.8 |
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