Pregenerated sensors for HOXC6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001661Ensembl transcript IDs: ENSMUST00000001711.6
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TTCGAAATATGCCATAATGACCCCCAGGAATCTTTAAATACAATTTaGCTGGACTGGGCATTTGCTGGGGCAGAGGGACCGGGCAGGGAC | + |
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Preference number: 1 (lower is better) Translates to: FEICHNDPQESLNTI*LDWAFAGAEGPGRD Trigger: GTCCCTGCCCGGTCCCTCTGCCCCAGCAAATGCCCAGTCCAGGCAAATTGTATTTAAAGATTCCTGGGGGTCATTATGGCATATTTCGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001711.6 |
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| 3UTR-3UTR GCA 90 bp | TGTTGCAGGGCCAAGGCGCGCCCTCCTGAGGCCTCCTGCCCTCCGGCTGTCAGGGCGAGGGAAGGGGCCTaGAGACAAGCCAGGAAGAAG | + |
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Preference number: 2 (lower is better) Translates to: CCRAKARPPEASCPPAVRAREGA*RQARKK Trigger: CTTCTTCCTGGCTTGTCTGCAGGCCCCTTCCCTCGC...CCTGACAGCCGGAGGGCAGGAGGCCTCAGGAGGGCGCGCCTTGGCCCTGCAACA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001711.6 |
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| 3UTR CAA 90 bp | AGGAAGAAGCTAGCGAGGGAGCTAGAGGAAGAGACGAGTGAAGAGTaGTGCAGTGAGGGAGGGGGTCCAAAGCTGACTTTTAGGTCCACG | + |
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Preference number: 2 (lower is better) Translates to: RKKLARELEEETSEE*CSEGGGPKLTFRST Trigger: CGTGGACCTAAAAGTCAGCTTTGGACCCCCTCCCTCACTGCACAACTCTTCACTCGTCTCTTCCTCTAGCTCCCTCGCTAGCTTCTTCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001711.6 |
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| 3UTR-3UTR TCA 90 bp | TCACTTGGAGAGACATCTGAGGAGTCTGAAGCGAGGTTCAGGTCTCCTAGGCCTGAGGGGGTCCAAAGCTaGCTTTTAGGTCCACGTCTG | + |
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Preference number: 2 (lower is better) Translates to: SLGETSEESEARFRSPRPEGVQS*LLGPRL Trigger: CAGACGTGGACCTAAAAGTCAGCTTTGGACCCCCTC...AGGCCTAGGAGACCTGAACCTCGCTTCAGACTCCTCAGATGTCTCTCCAAGTGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001711.6 |
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| 3UTR-3UTR GCA 90 bp | GAAATATGCCATAATGACCCCCAGGAATCTTTAAATACAATTTGCCTGGACTGGCCTCCTGAGGCCTCCTaGCCTCCGGCTGTCAGGCCG | + |
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Preference number: 2 (lower is better) Translates to: EICHNDPQESLNTICLDWPPEAS*PPAVRP Trigger: CGGCCTGACAGCCGGAGGGCAGGAGGCCTCAGGAGG...CCAGTCCAGGCAAATTGTATTTAAAGATTCCTGGGGGTCATTATGGCATATTTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001711.6 |
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| 3UTR GCA 72 bp | TGTTGCAGGGCCAAGGCGCGCCCTCCTGAGGCCTCCTaGCCTCCGGCTGTCAGGCCGGGCCCTGAGGCCCCC | + |
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Preference number: 3 (lower is better) Translates to: CCRAKARPPEAS*PPAVRPGPEAP Trigger: GGGGGCCTCAGGGCCCGGCCTGACAGCCGGAGGGCAGGAGGCCTCAGGAGGGCGCGCCTTGGCCCTGCAACA 76% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001711.6 |
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| 3UTR-3UTR CAA 90 bp | TGTTGCAGGGCCAAGGCGCGCCCTCCTGAGGCCTCCTGCCCTCCGGCTGTCAGGGAGCCTAGGGCTCACTaGGAGAGACATCTGAGGAGT | + |
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Preference number: 3 (lower is better) Translates to: CCRAKARPPEASCPPAVREPRAH*ERHLRS Trigger: ACTCCTCAGATGTCTCTCCAAGTGAGCCCTAGGCTC...CCTGACAGCCGGAGGGCAGGAGGCCTCAGGAGGGCGCGCCTTGGCCCTGCAACA 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001711.6 |
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| 3UTR-3UTR CAA 90 bp | CCTAGGGCTCACTTGGAGAGACATCTGAGGAGTCTGAAGCGAGGTTCAGGTCTCGAGACGAGTGAAGAGTaGTGCAGTGAGGGAGGGGGT | + |
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Preference number: 3 (lower is better) Translates to: PRAHLERHLRSLKRGSGLETSEE*CSEGGG Trigger: ACCCCCTCCCTCACTGCACAACTCTTCACTCGTCTC...GAGACCTGAACCTCGCTTCAGACTCCTCAGATGTCTCTCCAAGTGAGCCCTAGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001711.6 |
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| 3UTR CCA 72 bp | GACCCCCAGGAATCTTTAAATACAATTTGCCTGGACTaGGCATTTGCTGGGGCAGAGGGACCGGGCAGGGAC | + |
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Preference number: 3 (lower is better) Translates to: DPQESLNTICLD*AFAGAEGPGRD Trigger: GTCCCTGCCCGGTCCCTCTGCCCCAGCAAATGCCCAGTCCAGGCAAATTGTATTTAAAGATTCCTGGGGGTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001711.6 |
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| 3UTR GCA 72 bp | GAAATATTCACACAGAAACGGTCACAGTTCGAAATATaGCATAATGACCCCCAGGAATCTTTAAATACAATT | + |
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Preference number: 3 (lower is better) Translates to: EIFTQKRSQFEI*HNDPQESLNTI Trigger: AATTGTATTTAAAGATTCCTGGGGGTCATTATGGCATATTTCGAACTGTGACCGTTTCTGTGTGAATATTTC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001711.6 |
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| CDS-3UTR CCA 90 bp | CCTAGGGCTCACTTGGAGAGACATCTGAGGAGTCTGAAGCGAGGTTCAGGTCTCTTGGGGAGGACGTCCTaGCCCCCGGCGAGGTGGCAG | + |
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Preference number: 4 (lower is better) Translates to: PRAHLERHLRSLKRGSGLLGRTS*PPARWQ Trigger: CTGCCACCTCGCCGGGGGCCAGGACGTCCTCCCCAA...GAGACCTGAACCTCGCTTCAGACTCCTCAGATGTCTCTCCAAGTGAGCCCTAGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001711.6 |
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| CDS-3UTR TCA 90 bp | TGTTGCAGGGCCAAGGCGCGCCCTCCTGAGGCCTCCTGCCCTCCGGCTGTCAGGGTTTTGTCTGCAGTTTaGGAGCATGTCTTTCTCCTG | + |
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Preference number: 4 (lower is better) Translates to: CCRAKARPPEASCPPAVRVLSAV*EHVFLL Trigger: CAGGAGAAAGACATGCTCTCAAACTGCAGACAAAAC...CCTGACAGCCGGAGGGCAGGAGGCCTCAGGAGGGCGCGCCTTGGCCCTGCAACA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001711.6 |
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| CDS-3UTR TCA 90 bp | ACAGAGTGTGTGATTCGGGGAGCTGGGATGAGCAAGGGAGAAGAGAGGGGTGCACCCTCCGCCACCCCCTaGGAGTGTGGACGTGAGATT | + |
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Preference number: 4 (lower is better) Translates to: TECVIRGAGMSKGEERGAPSATP*ECGREI Trigger: AATCTCACGTCCACACTCTCAGGGGGTGGCGGAGGG...TGCACCCCTCTCTTCTCCCTTGCTCATCCCAGCTCCCCGAATCACACACTCTGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000001711.6 |
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| CDS-3UTR GCA 90 bp | TGTTGCAGGGCCAAGGCGCGCCCTCCTGAGGCCTCCTGCCCTCCGGCTGTCAGGCTAAGGTGTTTTGTCTaGAGTTTGAGAGCATGTCTT | + |
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Preference number: 4 (lower is better) Translates to: CCRAKARPPEASCPPAVRLRCFV*SLRACL Trigger: AAGACATGCTCTCAAACTGCAGACAAAACACCTTAG...CCTGACAGCCGGAGGGCAGGAGGCCTCAGGAGGGCGCGCCTTGGCCCTGCAACA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001711.6 |
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| CDS-3UTR CCA 90 bp | ACAGAGTGTGTGATTCGGGGAGCTGGGATGAGCAAGGGAGAAGAGAGGGGTGCATGGATACTGGCTTTCTaGTCCTGGGGCGCAGTCCTG | + |
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Preference number: 4 (lower is better) Translates to: TECVIRGAGMSKGEERGAWILAF*SWGAVL Trigger: CAGGACTGCGCCCCAGGACCAGAAAGCCAGTATCCA...TGCACCCCTCTCTTCTCCCTTGCTCATCCCAGCTCCCCGAATCACACACTCTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000001711.6 |
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| CDS-3UTR CCA 90 bp | TCACTTGGAGAGACATCTGAGGAGTCTGAAGCGAGGTTCAGGTCTCCTAGGCCTTGGCCCCCGGCGAGGTaGCAGGATAAGGAAGGGTTA | + |
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Preference number: 4 (lower is better) Translates to: SLGETSEESEARFRSPRPWPPAR*QDKEGL Trigger: TAACCCTTCCTTATCCTGCCACCTCGCCGGGGGCCA...AGGCCTAGGAGACCTGAACCTCGCTTCAGACTCCTCAGATGTCTCTCCAAGTGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001711.6 |
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| CDS-3UTR TCA 90 bp | ATCATTGTGCCAGAGATAAATACAGAGTGTGTGATTCGGGGAGCTGGGATGAGCCATAGGCGGTGGAATTaGGGGCGACGTTGGGGAGGA | + |
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Preference number: 4 (lower is better) Translates to: IIVPEINTECVIRGAGMSHRRWN*GRRWGG Trigger: TCCTCCCCAACGTCGCCCTCAATTCCACCGCCTATG...GCTCATCCCAGCTCCCCGAATCACACACTCTGTATTTATCTCTGGCACAATGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000001711.6 |
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| CDS-3UTR TCA 90 bp | ATCATTGTGCCAGAGATAAATACAGAGTGTGTGATTCGGGGAGCTGGGATGAGCGCCCCCGGCTGGAACTaGACACGACATTCTCCTGTG | + |
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Preference number: 4 (lower is better) Translates to: IIVPEINTECVIRGAGMSAPGWN*TRHSPV Trigger: CACAGGAGAATGTCGTGTTCAGTTCCAGCCGGGGGC...GCTCATCCCAGCTCCCCGAATCACACACTCTGTATTTATCTCTGGCACAATGAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001711.6 |
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| CDS-3UTR GCA 90 bp | CCTAGGGCTCACTTGGAGAGACATCTGAGGAGTCTGAAGCGAGGTTCAGGTCTCGTTCTGAGCTACGGCTaGTCCATAGGTCGAGAAATG | + |
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Preference number: 4 (lower is better) Translates to: PRAHLERHLRSLKRGSGLVLSYG*SIGREM Trigger: CATTTCTCGACCTATGGAGCAGCCGTAGCTCAGAAC...GAGACCTGAACCTCGCTTCAGACTCCTCAGATGTCTCTCCAAGTGAGCCCTAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001711.6 |
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| CDS-3UTR CCA 90 bp | ACAGAGTGTGTGATTCGGGGAGCTGGGATGAGCAAGGGAGAAGAGAGGGGTGCACGAGAAATGCCTCACTaGATCATAGGCGGTGGAATT | + |
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Preference number: 4 (lower is better) Translates to: TECVIRGAGMSKGEERGAREMPH*IIGGGI Trigger: AATTCCACCGCCTATGATCCAGTGAGGCATTTCTCG...TGCACCCCTCTCTTCTCCCTTGCTCATCCCAGCTCCCCGAATCACACACTCTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001711.6 |
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| CDS-3UTR CCA 90 bp | TCACTTGGAGAGACATCTGAGGAGTCTGAAGCGAGGTTCAGGTCTCCTAGGCCTGGTAAATCTGGATACTaGCTTTCTGGTCCTGGGGCG | + |
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Preference number: 4 (lower is better) Translates to: SLGETSEESEARFRSPRPGKSGY*LSGPGA Trigger: CGCCCCAGGACCAGAAAGCCAGTATCCAGATTTACC...AGGCCTAGGAGACCTGAACCTCGCTTCAGACTCCTCAGATGTCTCTCCAAGTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001711.6 |
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| CDS-3UTR TCA 90 bp | CCTAGGGCTCACTTGGAGAGACATCTGAGGAGTCTGAAGCGAGGTTCAGGTCTCAAAATCCTGAGCGATTaGGGTCTGTGTGTTATGTCC | + |
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Preference number: 4 (lower is better) Translates to: PRAHLERHLRSLKRGSGLKILSD*GLCVMS Trigger: GGACATAACACACAGACCTCAATCGCTCAGGATTTT...GAGACCTGAACCTCGCTTCAGACTCCTCAGATGTCTCTCCAAGTGAGCCCTAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001711.6 |
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| CDS-3UTR CCA 90 bp | CAAGCCAGGAAGAAGCTAGCGAGGGAGCTAGAGGAAGAGACGAGTGAAGAGTTGCACGACATTCTCCTGTaGCGAATAAAAGGGAGTCGA | + |
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Preference number: 4 (lower is better) Translates to: QARKKLARELEEETSEELHDILL*RIKGSR Trigger: TCGACTCCCTTTTATTCGCCACAGGAGAATGTCGTG...CAACTCTTCACTCGTCTCTTCCTCTAGCTCCCTCGCTAGCTTCTTCCTGGCTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001711.6 |
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| CDS-3UTR TCA 90 bp | ATCATTGTGCCAGAGATAAATACAGAGTGTGTGATTCGGGGAGCTGGGATGAGCTCAGAACTAAAATCCTaGGCGATTGAGGTCTGTGTG | + |
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Preference number: 4 (lower is better) Translates to: IIVPEINTECVIRGAGMSSELKS*AIEVCV Trigger: CACACAGACCTCAATCGCTCAGGATTTTAGTTCTGA...GCTCATCCCAGCTCCCCGAATCACACACTCTGTATTTATCTCTGGCACAATGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001711.6 |
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| CDS-3UTR CAA 90 bp | CGAGTGGAGGCCCCAGGCCCTGGAGCCAGCTCTCTGCGCCGGAGGGCGGGGGTGCCAGGCTGTCGGCGGTaGCCCCTCCGCCACCCCCTG | + |
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Preference number: 5 (lower is better) Translates to: RVEAPGPGASSLRRRAGVPGCRR*PLRHPL Trigger: CAGGGGGTGGCGGAGGGGCAACCGCCGACAGCCTGG...CACCCCCGCCCTCCGGCGCAGAGAGCTGGCTCCAGGGCCTGGGGCCTCCACTCG 78% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000001711.6 |
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| CDS-3UTR CAA 90 bp | CGAGTGGAGGCCCCAGGCCCTGGAGCCAGCTCTCTGCGCCGGAGGGCGGGGGTGGAATTGAGGGCGACGTaGGGGAGGACGTCCTGGCCC | + |
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Preference number: 5 (lower is better) Translates to: RVEAPGPGASSLRRRAGVELRAT*GRTSWP Trigger: GGGCCAGGACGTCCTCCCCAACGTCGCCCTCAATTC...CACCCCCGCCCTCCGGCGCAGAGAGCTGGCTCCAGGGCCTGGGGCCTCCACTCG 73% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000001711.6 |
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| CDS CCA 90 bp | CCGGTTCTGAGCTACGGCTGCTCCATAGGTCGAGAAATGCCTCACTaGATCATAGGCGGTGGAATTGAGGGCGACGTTGGGGAGGACGTC | + |
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Preference number: 5 (lower is better) Translates to: PVLSYGCSIGREMPH*IIGGGIEGDVGEDV Trigger: GACGTCCTCCCCAACGTCGCCCTCAATTCCACCGCCTATGATCCAGTGAGGCATTTCTCGACCTATGGAGCAGCCGTAGCTCAGAACCGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001711.6 |
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| CDS CCA 90 bp | ATAGTCATACGGCCCCCGGCTGGAACTGAACACGACATTCTCCTGTaGCGAATAAAAGGGAGTCGAGTAGATCCGGTTCTGAGCTACGGC | + |
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Preference number: 5 (lower is better) Translates to: IVIRPPAGTEHDILL*RIKGSRVDPVLSYG Trigger: GCCGTAGCTCAGAACCGGATCTACTCGACTCCCTTTTATTCGCCACAGGAGAATGTCGTGTTCAGTTCCAGCCGGGGGCCGTATGACTAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001711.6 |
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| CDS GCA 90 bp | TGGCGAATAAAAGGGAGTCGAGTAGATCCGGTTCTGAGCTACGGCTaGTCCATAGGTCGAGAAATGCCTCACTGGATCATAGGCGGTGGA | + |
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Preference number: 5 (lower is better) Translates to: WRIKGSRVDPVLSYG*SIGREMPHWIIGGG Trigger: TCCACCGCCTATGATCCAGTGAGGCATTTCTCGACCTATGGAGCAGCCGTAGCTCAGAACCGGATCTACTCGACTCCCTTTTATTCGCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001711.6 |
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| CDS CCA 72 bp | GCGGTGGAATTGAGGGCGACGTTGGGGAGGACGTCCTaGCCCCCGGCGAGGTGGCAGGATAAGGAAGGGTTA | + |
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Preference number: 6 (lower is better) Translates to: AVELRATLGRTS*PPARWQDKEGL Trigger: TAACCCTTCCTTATCCTGCCACCTCGCCGGGGGCCAGGACGTCCTCCCCAACGTCGCCCTCAATTCCACCGC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001711.6 |
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| CDS CCA 72 bp | AGCTACGGCTGCTCCATAGGTCGAGAAATGCCTCACTaGATCATAGGCGGTGGAATTGAGGGCGACGTTGGG | + |
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Preference number: 6 (lower is better) Translates to: SYGCSIGREMPH*IIGGGIEGDVG Trigger: CCCAACGTCGCCCTCAATTCCACCGCCTATGATCCAGTGAGGCATTTCTCGACCTATGGAGCAGCCGTAGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001711.6 |
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| CDS CCA 72 bp | CGGCCCCCGGCTGGAACTGAACACGACATTCTCCTGTaGCGAATAAAAGGGAGTCGAGTAGATCCGGTTCTG | + |
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Preference number: 6 (lower is better) Translates to: RPPAGTEHDILL*RIKGSRVDPVL Trigger: CAGAACCGGATCTACTCGACTCCCTTTTATTCGCCACAGGAGAATGTCGTGTTCAGTTCCAGCCGGGGGCCG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001711.6 |
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| CDS CCA 72 bp | AATTCATTCGCTGCATCCAGGGGTAAATCTGGATACTaGCTTTCTGGTCCTGGGGCGCAGTCCTGCCCTGCT | + |
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Preference number: 6 (lower is better) Translates to: NSFAASRGKSGY*LSGPGAQSCPA Trigger: AGCAGGGCAGGACTGCGCCCCAGGACCAGAAAGCCAGTATCCAGATTTACCCCTGGATGCAGCGAATGAATT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001711.6 |
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