Pregenerated sensors for HOXC5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022485Ensembl transcript IDs: ENSMUST00000001709.3
Found 81 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCGCCCTACAAGAATGTGCCCCGGGCCTGGGGTGCTCAGCTGAGCTaGGGCAAGACAGGCAGTGCAGGCGGTCCTGCGGAACCCTGGGTC | + |
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Preference number: 1 (lower is better) Translates to: PPYKNVPRAWGAQLS*GKTGSAGGPAEPWV Trigger: GACCCAGGGTTCCGCAGGACCGCCTGCACTGCCTGTCTTGCCTCAGCTCAGCTGAGCACCCCAGGCCCGGGGCACATTCTTGTAGGGCGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR TCA 90 bp | AGTACCCGCCCTACAAGAATGTGCCCCGGGCCTGGGGTGCTCAGCTaGGCTGAGGCAAGACAGGCAGTGCAGGCGGTCCTGCGGAACCCT | + |
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Preference number: 1 (lower is better) Translates to: STRPTRMCPGPGVLS*AEARQAVQAVLRNP Trigger: AGGGTTCCGCAGGACCGCCTGCACTGCCTGTCTTGCCTCAGCTCAGCTGAGCACCCCAGGCCCGGGGCACATTCTTGTAGGGCGGGTACT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR GCA 90 bp | ACTTATCCAGTACCCGCCCTACAAGAATGTGCCCCGGGCCTGGGGTaGTCAGCTGAGCTGAGGCAAGACAGGCAGTGCAGGCGGTCCTGC | + |
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Preference number: 1 (lower is better) Translates to: TYPVPALQECAPGLG*SAELRQDRQCRRSC Trigger: GCAGGACCGCCTGCACTGCCTGTCTTGCCTCAGCTCAGCTGAGCACCCCAGGCCCGGGGCACATTCTTGTAGGGCGGGTACTGGATAAGT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR GCA 90 bp | TCCTGCGGAACCCTGGGTCGATGGGGATTCGGAATGCCAAAGAAATaGGCTTTTGTCTGGGAGGCCCGGAGCCAGTGCTCTAGCCTCCGC | + |
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Preference number: 1 (lower is better) Translates to: SCGTLGRWGFGMPKK*AFVWEARSQCSSLR Trigger: GCGGAGGCTAGAGCACTGGCTCCGGGCCTCCCAGACAAAAGCGCATTTCTTTGGCATTCCGAATCCCCATCGACCCAGGGTTCCGCAGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR GCA 90 bp | AGTGCAGGCGGTCCTGCGGAACCCTGGGTCGATGGGGATTCGGAATaGCAAAGAAATGCGCTTTTGTCTGGGAGGCCCGGAGCCAGTGCT | + |
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Preference number: 1 (lower is better) Translates to: SAGGPAEPWVDGDSE*QRNALLSGRPGASA Trigger: AGCACTGGCTCCGGGCCTCCCAGACAAAAGCGCATTTCTTTGGCATTCCGAATCCCCATCGACCCAGGGTTCCGCAGGACCGCCTGCACT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR CCA 90 bp | AGGCAAGACAGGCAGTGCAGGCGGTCCTGCGGAACCCTGGGTCGATaGGGATTCGGAATGCCAAAGAAATGCGCTTTTGTCTGGGAGGCC | + |
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Preference number: 1 (lower is better) Translates to: RQDRQCRRSCGTLGR*GFGMPKKCAFVWEA Trigger: GGCCTCCCAGACAAAAGCGCATTTCTTTGGCATTCCGAATCCCCATCGACCCAGGGTTCCGCAGGACCGCCTGCACTGCCTGTCTTGCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR TCA 90 bp | AGCCTTCAGCAGGCTGGTCAGCCTAGGCAGGAACAAAGAAGAGGGTaGGGCGGAGGTCGGGGAGAAGGGGTTACAGTCAGTCTGTCTCAC | + |
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Preference number: 1 (lower is better) Translates to: SLQQAGQPRQEQRRG*GGGRGEGVTVSLSH Trigger: GTGAGACAGACTGACTGTAACCCCTTCTCCCCGACCTCCGCCTCACCCTCTTCTTTGTTCCTGCCTAGGCTGACCAGCCTGCTGAAGGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR GCA 90 bp | CAAAGGTTAGTTGAAAGCACCCCGATTCTAGCTAGTCATAGCCTCTaGCTGGCACAACCAGCCTTCAGCAGGCTGGTCAGCCTAGGCAGG | + |
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Preference number: 1 (lower is better) Translates to: QRLVESTPILASHSL*LAQPAFSRLVSLGR Trigger: CCTGCCTAGGCTGACCAGCCTGCTGAAGGCTGGTTGTGCCAGGCAGAGGCTATGACTAGCTAGAATCGGGGTGCTTTCAACTAACCTTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR GCA 90 bp | GAAGGCTGGAGAGGAAATGCAGTAAGGTTTTATGGGCCCATTCCGTaGGTTTGTTTCTCCTGTAAAGTACTTCCTCCTTCAACAAGTCCT | + |
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Preference number: 1 (lower is better) Translates to: EGWRGNAVRFYGPIP*VCFSCKVLPPSTSP Trigger: AGGACTTGTTGAAGGAGGAAGTACTTTACAGGAGAAACAAACGCACGGAATGGGCCCATAAAACCTTACTGCATTTCCTCTCCAGCCTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR CCA 90 bp | AACACCTCTTTACCAAGCAGCACCTACTATTGCTGCGAATCCTTCTaGCATCTAGACAGAGGACTCAACCTTTCTTCTATGTCAGAAAGG | + |
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Preference number: 1 (lower is better) Translates to: NTSLPSSTYYCCESF*HLDRGLNLSSMSER Trigger: CCTTTCTGACATAGAAGAAAGGTTGAGTCCTCTGTCTAGATGCCAGAAGGATTCGCAGCAATAGTAGGTGCTGCTTGGTAAAGAGGTGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR CCA 90 bp | ATGACAAAATATAGTTTCAGGAAGGGCTTGGAGTCAATAAATAGTTaGGCAACTGCAATGGGGCAGGAAGGTGAGAAAGTCATGGCAAGA | + |
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Preference number: 1 (lower is better) Translates to: MTKYSFRKGLESINS*ATAMGQEGEKVMAR Trigger: TCTTGCCATGACTTTCTCACCTTCCTGCCCCATTGCAGTTGCCCAACTATTTATTGACTCCAAGCCCTTCCTGAAACTATATTTTGTCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR CAA 90 bp | GAACCCTGGGTCGATGGGGATTCGGAATGCCAAAGAAATGCGCTTTaGTCTGGGAGGCCCGGAGCCAGTGCTCTAGCCTCCGCCTCAAAA | + |
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Preference number: 2 (lower is better) Translates to: EPWVDGDSECQRNAL*SGRPGASALASASK Trigger: TTTTGAGGCGGAGGCTAGAGCACTGGCTCCGGGCCTCCCAGACAAAAGCGCATTTCTTTGGCATTCCGAATCCCCATCGACCCAGGGTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR-3UTR TCA 90 bp | CACAGCAAGTGGAAACAACAGTACAGGAGTCCTCAAGTGTACTCCCCTTCACCCCCTGGGGTGCTCAGCTaGGCTGAGGCAAGACAGGCA | + |
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Preference number: 2 (lower is better) Translates to: HSKWKQQYRSPQVYSPSPPGVLS*AEARQA Trigger: TGCCTGTCTTGCCTCAGCTCAGCTGAGCACCCCAGG...GGGTGAAGGGGAGTACACTTGAGGACTCCTGTACTGTTGTTTCCACTTGCTGTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR-3UTR GCA 90 bp | CAACTTGCTAGGGTCCAAAGACAAGAGACCCCAATAGTTGAGCTAGCTAGCAGGCAGTGCAGGCGGTCCTaGGGAACCCTGGGTCGATGG | + |
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Preference number: 2 (lower is better) Translates to: QLARVQRQETPIVELASRQCRRS*GTLGRW Trigger: CCATCGACCCAGGGTTCCGCAGGACCGCCTGCACTG...CCTGCTAGCTAGCTCAACTATTGGGGTCTCTTGTCTTTGGACCCTAGCAAGTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR-3UTR CCA 90 bp | GAAAGCACCCCGATTCTAGCTAGTCATAGCCTCTGCCTGGCACAACCAGCCTTCAAATGCGCTTTTGTCTaGGAGGCCCGGAGCCAGTGC | + |
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Preference number: 2 (lower is better) Translates to: ESTPILASHSLCLAQPAFKCAFV*EARSQC Trigger: GCACTGGCTCCGGGCCTCCCAGACAAAAGCGCATTT...GAAGGCTGGTTGTGCCAGGCAGAGGCTATGACTAGCTAGAATCGGGGTGCTTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR-3UTR TCA 90 bp | CCTAGAAGACAGGGAGCAGTCTGTATGTTTTCTCTAAGGCAGGCACACACTGCAGAACAAAGAAGAGGGTaGGGCGGAGGTCGGGGAGAA | + |
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Preference number: 2 (lower is better) Translates to: PRRQGAVCMFSLRQAHTAEQRRG*GGGRGE Trigger: TTCTCCCCGACCTCCGCCTCACCCTCTTCTTTGTTC...TGCAGTGTGTGCCTGCCTTAGAGAAAACATACAGACTGCTCCCTGTCTTCTAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR-3UTR GCA 90 bp | AACCTTTCTTCTATGTCAGAAAGGACCTACAAGGATGACCTAGACCCAGAAGAGCGCCCTACAAGAATGTaGCCCGGGCCTGGGGTGCTC | + |
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Preference number: 2 (lower is better) Translates to: NLSSMSERTYKDDLDPEERPTRM*PGPGVL Trigger: GAGCACCCCAGGCCCGGGGCACATTCTTGTAGGGCG...CTCTTCTGGGTCTAGGTCATCCTTGTAGGTCCTTTCTGACATAGAAGAAAGGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR-3UTR CCA 90 bp | CACAGCAAGTGGAAACAACAGTACAGGAGTCCTCAAGTGTACTCCCCTTCACCCGTCATAGCCTCTGCCTaGCACAACCAGCCTTCAGCA | + |
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Preference number: 2 (lower is better) Translates to: HSKWKQQYRSPQVYSPSPVIASA*HNQPSA Trigger: TGCTGAAGGCTGGTTGTGCCAGGCAGAGGCTATGAC...GGGTGAAGGGGAGTACACTTGAGGACTCCTGTACTGTTGTTTCCACTTGCTGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR-3UTR GCA 90 bp | AGGAAGGGCTTGGAGTCAATAAATAGTTGGGCAACTGCAATGGGGCAGGAAGGTGCTAGTCATAGCCTCTaGCTGGCACAACCAGCCTTC | + |
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Preference number: 2 (lower is better) Translates to: RKGLESINSWATAMGQEGASHSL*LAQPAF Trigger: GAAGGCTGGTTGTGCCAGGCAGAGGCTATGACTAGC...ACCTTCCTGCCCCATTGCAGTTGCCCAACTATTTATTGACTCCAAGCCCTTCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR-3UTR CCA 90 bp | CTGCATACCCTCTCCTATAGGGCACCCTCCCCCTGTATACAAAATCTCAGAGATGAAGTTCCCGGGCTTTaGGAAGGGGATTGGAAGGTA | + |
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Preference number: 2 (lower is better) Translates to: LHTLSYRAPSPCIQNLRDEVPGL*EGDWKV Trigger: TACCTTCCAATCCCCTTCCCAAAGCCCGGGAACTTC...ATCTCTGAGATTTTGTATACAGGGGGAGGGTGCCCTATAGGAGAGGGTATGCAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR-3UTR CCA 90 bp | CTGCATACCCTCTCCTATAGGGCACCCTCCCCCTGTATACAAAATCTCAGAGATGAACATCTCAAACCGTaGCCATTTCTCCTTCCCCAA | + |
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Preference number: 2 (lower is better) Translates to: LHTLSYRAPSPCIQNLRDEHLKP*PFLLPQ Trigger: TTGGGGAAGGAGAAATGGCCACGGTTTGAGATGTTC...ATCTCTGAGATTTTGTATACAGGGGGAGGGTGCCCTATAGGAGAGGGTATGCAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR-3UTR CCA 90 bp | AACCTTTCTTCTATGTCAGAAAGGACCTACAAGGATGACCTAGACCCAGAAGAGGGATGGTTTAAAGACTaGGCCTCCCAATACATCTCA | + |
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Preference number: 2 (lower is better) Translates to: NLSSMSERTYKDDLDPEEGWFKD*ASQYIS Trigger: TGAGATGTATTGGGAGGCCCAGTCTTTAAACCATCC...CTCTTCTGGGTCTAGGTCATCCTTGTAGGTCCTTTCTGACATAGAAGAAAGGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR-3UTR TCA 90 bp | CCCAATACATCTCAGAGCCTATTTAGACACATCAATTCAATGCATGCCCTAAACGTTACAAAGGTTAGTTaGAAGCACCCCGATTCTAGC | + |
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Preference number: 2 (lower is better) Translates to: PNTSQSLFRHINSMHALNVTKVS*KHPDSS Trigger: GCTAGAATCGGGGTGCTTTCAACTAACCTTTGTAAC...GTTTAGGGCATGCATTGAATTGATGTGTCTAAATAGGCTCTGAGATGTATTGGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR CAA 90 bp | TTTCTGGCTTTATTTGATATGACAAAATATAGTTTCAGGAAGGGCTaGGAGTCAATAAATAGTTGGGCAACTGCAATGGGGCAGGAAGGT | + |
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Preference number: 2 (lower is better) Translates to: FLALFDMTKYSFRKG*ESINSWATAMGQEG Trigger: ACCTTCCTGCCCCATTGCAGTTGCCCAACTATTTATTGACTCCAAGCCCTTCCTGAAACTATATTTTGTCATATCAAATAAAGCCAGAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR-3UTR GCA 90 bp | AGAACTCAGTTCCATTGTTCCCTATTCTTGCTGCTCCTAAAGGTGTTTAAAAATCATCAATTCAATGCATaGCCTAAACAGACAGAAGTA | + |
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Preference number: 2 (lower is better) Translates to: RTQFHCSLFLLLLKVFKNHQFNA*PKQTEV Trigger: TACTTCTGTCTGTTTAGGGCATGCATTGAATTGATG...ATTTTTAAACACCTTTAGGAGCAGCAAGAATAGGGAACAATGGAACTGAGTTCT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR GCA 72 bp | CTGGGGTGCTCAGCTGAGCTGAGGCAAGACAGGCAGTaGAGGCGGTCCTGCGGAACCCTGGGTCGATGGGGA | + |
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Preference number: 3 (lower is better) Translates to: LGCSAELRQDRQ*RRSCGTLGRWG Trigger: TCCCCATCGACCCAGGGTTCCGCAGGACCGCCTGCACTGCCTGTCTTGCCTCAGCTCAGCTGAGCACCCCAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR TCA 72 bp | AAGAATGTGCCCCGGGCCTGGGGTGCTCAGCTGAGCTaGGGCAAGACAGGCAGTGCAGGCGGTCCTGCGGAA | + |
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Preference number: 3 (lower is better) Translates to: KNVPRAWGAQLS*GKTGSAGGPAE Trigger: TTCCGCAGGACCGCCTGCACTGCCTGTCTTGCCTCAGCTCAGCTGAGCACCCCAGGCCCGGGGCACATTCTT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR TCA 72 bp | CCTACAAGAATGTGCCCCGGGCCTGGGGTGCTCAGCTaGGCTGAGGCAAGACAGGCAGTGCAGGCGGTCCTG | + |
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Preference number: 3 (lower is better) Translates to: PTRMCPGPGVLS*AEARQAVQAVL Trigger: CAGGACCGCCTGCACTGCCTGTCTTGCCTCAGCTCAGCTGAGCACCCCAGGCCCGGGGCACATTCTTGTAGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR GCA 72 bp | GTACCCGCCCTACAAGAATGTGCCCCGGGCCTGGGGTaGTCAGCTGAGCTGAGGCAAGACAGGCAGTGCAGG | + |
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Preference number: 3 (lower is better) Translates to: VPALQECAPGLG*SAELRQDRQCR Trigger: CCTGCACTGCCTGTCTTGCCTCAGCTCAGCTGAGCACCCCAGGCCCGGGGCACATTCTTGTAGGGCGGGTAC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR CCA 72 bp | GGCAAGACAGGCAGTGCAGGCGGTCCTGCGGAACCCTaGGTCGATGGGGATTCGGAATGCCAAAGAAATGCG | + |
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Preference number: 3 (lower is better) Translates to: GKTGSAGGPAEP*VDGDSECQRNA Trigger: CGCATTTCTTTGGCATTCCGAATCCCCATCGACCCAGGGTTCCGCAGGACCGCCTGCACTGCCTGTCTTGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR CCA 72 bp | TGGGGATTCGGAATGCCAAAGAAATGCGCTTTTGTCTaGGAGGCCCGGAGCCAGTGCTCTAGCCTCCGCCTC | + |
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Preference number: 3 (lower is better) Translates to: WGFGMPKKCAFV*EARSQCSSLRL Trigger: GAGGCGGAGGCTAGAGCACTGGCTCCGGGCCTCCCAGACAAAAGCGCATTTCTTTGGCATTCCGAATCCCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR GCA 72 bp | ACCCTGGGTCGATGGGGATTCGGAATGCCAAAGAAATaGGCTTTTGTCTGGGAGGCCCGGAGCCAGTGCTCT | + |
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Preference number: 3 (lower is better) Translates to: TLGRWGFGMPKK*AFVWEARSQCS Trigger: AGAGCACTGGCTCCGGGCCTCCCAGACAAAAGCGCATTTCTTTGGCATTCCGAATCCCCATCGACCCAGGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR CCA 72 bp | AGGCAGTGCAGGCGGTCCTGCGGAACCCTGGGTCGATaGGGATTCGGAATGCCAAAGAAATGCGCTTTTGTC | + |
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Preference number: 3 (lower is better) Translates to: RQCRRSCGTLGR*GFGMPKKCAFV Trigger: GACAAAAGCGCATTTCTTTGGCATTCCGAATCCCCATCGACCCAGGGTTCCGCAGGACCGCCTGCACTGCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR GCA 72 bp | GTTGAAAGCACCCCGATTCTAGCTAGTCATAGCCTCTaGCTGGCACAACCAGCCTTCAGCAGGCTGGTCAGC | + |
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Preference number: 3 (lower is better) Translates to: VESTPILASHSL*LAQPAFSRLVS Trigger: GCTGACCAGCCTGCTGAAGGCTGGTTGTGCCAGGCAGAGGCTATGACTAGCTAGAATCGGGGTGCTTTCAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR CCA 72 bp | TGTAAAGTACTTCCTCCTTCAACAAGTCCTGGAGCCTaGAGTGGAGCTAAGCAGCGCATCAGCCTAGGCCAG | + |
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Preference number: 3 (lower is better) Translates to: CKVLPPSTSPGA*SGAKQRISLGQ Trigger: CTGGCCTAGGCTGATGCGCTGCTTAGCTCCACTCCAGGCTCCAGGACTTGTTGAAGGAGGAAGTACTTTACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR CCA 72 bp | GGCTTGGCTCCAGGAAATCACCCCATTGTGGAAGGCTaGAGAGGAAATGCAGTAAGGTTTTATGGGCCCATT | + |
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Preference number: 3 (lower is better) Translates to: GLAPGNHPIVEG*RGNAVRFYGPI Trigger: AATGGGCCCATAAAACCTTACTGCATTTCCTCTCCAGCCTTCCACAATGGGGTGATTTCCTGGAGCCAAGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR GCA 72 bp | CCCAACACCTCTTTACCAAGCAGCACCTACTATTGCTaGGAATCCTTCTGGCATCTAGACAGAGGACTCAAC | + |
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Preference number: 3 (lower is better) Translates to: PNTSLPSSTYYC*ESFWHLDRGLN Trigger: GTTGAGTCCTCTGTCTAGATGCCAGAAGGATTCGCAGCAATAGTAGGTGCTGCTTGGTAAAGAGGTGTTGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR-3UTR CAA 90 bp | CTGCATACCCTCTCCTATAGGGCACCCTCCCCCTGTATACAAAATCTCAGAGATCATTGTTCCCTATTCTaGCTGCTCCTAAAGGTGTTT | + |
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Preference number: 3 (lower is better) Translates to: LHTLSYRAPSPCIQNLRDHCSLF*LLLKVF Trigger: AAACACCTTTAGGAGCAGCAAGAATAGGGAACAATG...ATCTCTGAGATTTTGTATACAGGGGGAGGGTGCCCTATAGGAGAGGGTATGCAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR TCA 72 bp | CTCCCCCTGTATACAAAATCTCAGAGATATGATAGATaGCAGCAAACAGGCATGGCTCCCACACTGATCTAT | + |
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Preference number: 3 (lower is better) Translates to: LPLYTKSQRYDR*QQTGMAPTLIY Trigger: ATAGATCAGTGTGGGAGCCATGCCTGTTTGCTGTCATCTATCATATCTCTGAGATTTTGTATACAGGGGGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR GCA 72 bp | AGAGGAAATGCAGTAAGGTTTTATGGGCCCATTCCGTaGGTTTGTTTCTCCTGTAAAGTACTTCCTCCTTCA | + |
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Preference number: 3 (lower is better) Translates to: RGNAVRFYGPIP*VCFSCKVLPPS Trigger: TGAAGGAGGAAGTACTTTACAGGAGAAACAAACGCACGGAATGGGCCCATAAAACCTTACTGCATTTCCTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR-3UTR CAA 90 bp | AACCTTTCTTCTATGTCAGAAAGGACCTACAAGGATGACCTAGACCCAGAAGAGAGTTTCAGGAAGGGCTaGGAGTCAATAAATAGTTGG | + |
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Preference number: 3 (lower is better) Translates to: NLSSMSERTYKDDLDPEESFRKG*ESINSW Trigger: CCAACTATTTATTGACTCCAAGCCCTTCCTGAAACT...CTCTTCTGGGTCTAGGTCATCCTTGTAGGTCCTTTCTGACATAGAAGAAAGGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR-3UTR CAA 90 bp | AGAACTCAGTTCCATTGTTCCCTATTCTTGCTGCTCCTAAAGGTGTTTAAAAATGCTTTGGGAAGGGGATaGGAAGGTATAGAGAGCATA | + |
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Preference number: 3 (lower is better) Translates to: RTQFHCSLFLLLLKVFKNALGRG*EGIESI Trigger: TATGCTCTCTATACCTTCCAATCCCCTTCCCAAAGC...ATTTTTAAACACCTTTAGGAGCAGCAAGAATAGGGAACAATGGAACTGAGTTCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| CDS-3UTR CCA 90 bp | CTACAAGAATGTGCCCCGGGCCTGGGGTGCTCAGCTGAGCTGAGGCAAGACAGGGGTGAGCCCGGGGGTTaGCAGCCATGTCTACCCCGT | + |
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Preference number: 4 (lower is better) Translates to: LQECAPGLGCSAELRQDRGEPGG*QPCLPR Trigger: ACGGGGTAGACATGGCTGCCAACCCCCGGGCTCACC...CCTGTCTTGCCTCAGCTCAGCTGAGCACCCCAGGCCCGGGGCACATTCTTGTAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| CDS-3UTR GCA 90 bp | GAAAGCACCCCGATTCTAGCTAGTCATAGCCTCTGCCTGGCACAACCAGCCTTCCTCAGTCCGGCAGGCTaGCCTGTCTGCGCCTGCTCC | + |
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Preference number: 4 (lower is better) Translates to: ESTPILASHSLCLAQPAFLSPAG*PVCACS Trigger: GGAGCAGGCGCAGACAGGGCAGCCTGCCGGACTGAG...GAAGGCTGGTTGTGCCAGGCAGAGGCTATGACTAGCTAGAATCGGGGTGCTTTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| CDS-3UTR CCA 90 bp | CTACAAGAATGTGCCCCGGGCCTGGGGTGCTCAGCTGAGCTGAGGCAAGACAGGGGTAGCGCGTGTAACTaGTTCGGGACCGCTTGCCAT | + |
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Preference number: 4 (lower is better) Translates to: LQECAPGLGCSAELRQDRGSACN*FGTACH Trigger: ATGGCAAGCGGTCCCGAACCAGTTACACGCGCTACC...CCTGTCTTGCCTCAGCTCAGCTGAGCACCCCAGGCCCGGGGCACATTCTTGTAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| CDS-3UTR GCA 90 bp | GAAAGCACCCCGATTCTAGCTAGTCATAGCCTCTGCCTGGCACAACCAGCCTTCGAGCCGCTTCGTCTCTaGCCAGAGCGTGTCCCGGAG | + |
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Preference number: 4 (lower is better) Translates to: ESTPILASHSLCLAQPAFEPLRL*PERVPE Trigger: CTCCGGGACACGCTCTGGGCAGAGACGAAGCGGCTC...GAAGGCTGGTTGTGCCAGGCAGAGGCTATGACTAGCTAGAATCGGGGTGCTTTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| CDS-3UTR CCA 90 bp | CCTAGAAGACAGGGAGCAGTCTGTATGTTTTCTCTAAGGCAGGCACACACTGCACTGTGGCGGGGCCGGTaGCTGGCTCAGTCCGGCAGG | + |
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Preference number: 4 (lower is better) Translates to: PRRQGAVCMFSLRQAHTALWRGR*LAQSGR Trigger: CCTGCCGGACTGAGCCAGCCACCGGCCCCGCCACAG...TGCAGTGTGTGCCTGCCTTAGAGAAAACATACAGACTGCTCCCTGTCTTCTAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| CDS-3UTR CCA 90 bp | CACAGCAAGTGGAAACAACAGTACAGGAGTCCTCAAGTGTACTCCCCTTCACCCCCACGGGTAAATCTGTaGCGGGGCCGGTGGCTGGCT | + |
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Preference number: 4 (lower is better) Translates to: HSKWKQQYRSPQVYSPSPPRVNL*RGRWLA Trigger: AGCCAGCCACCGGCCCCGCCACAGATTTACCCGTGG...GGGTGAAGGGGAGTACACTTGAGGACTCCTGTACTGTTGTTTCCACTTGCTGTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR CAA 72 bp | GTCGATGGGGATTCGGAATGCCAAAGAAATGCGCTTTaGTCTGGGAGGCCCGGAGCCAGTGCTCTAGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: VDGDSECQRNAL*SGRPGASALAS Trigger: GGAGGCTAGAGCACTGGCTCCGGGCCTCCCAGACAAAAGCGCATTTCTTTGGCATTCCGAATCCCCATCGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| CDS-3UTR GCA 90 bp | CTGCGGAACCCTGGGTCGATGGGGATTCGGAATGCCAAAGAAATGCGCTTTTGTGCAGGCTGCCCTGTCTaGGCCTGCTCCTCTTTGATC | + |
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Preference number: 4 (lower is better) Translates to: LRNPGSMGIRNAKEMRFCAGCPV*ACSSLI Trigger: GATCAAAGAGGAGCAGGCGCAGACAGGGCAGCCTGC...ACAAAAGCGCATTTCTTTGGCATTCCGAATCCCCATCGACCCAGGGTTCCGCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| CDS-3UTR CCA 90 bp | GAAAGCACCCCGATTCTAGCTAGTCATAGCCTCTGCCTGGCACAACCAGCCTTCGCCATGTCTACCCCGTaGAGAGAGTTGGAAGGCGCA | + |
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Preference number: 4 (lower is better) Translates to: ESTPILASHSLCLAQPAFAMSTP*RELEGA Trigger: TGCGCCTTCCAACTCTCTCCACGGGGTAGACATGGC...GAAGGCTGGTTGTGCCAGGCAGAGGCTATGACTAGCTAGAATCGGGGTGCTTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| CDS-3UTR TCA 90 bp | CTGCATACCCTCTCCTATAGGGCACCCTCCCCCTGTATACAAAATCTCAGAGATGGGCGAGCCGCCTTCTaGCTGTACATCCCAGGGTTC | + |
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Preference number: 4 (lower is better) Translates to: LHTLSYRAPSPCIQNLRDGRAAF*LYIPGF Trigger: GAACCCTGGGATGTACAGTCAGAAGGCGGCTCGCCC...ATCTCTGAGATTTTGTATACAGGGGGAGGGTGCCCTATAGGAGAGGGTATGCAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| CDS-3UTR GCA 90 bp | CTGCGGAACCCTGGGTCGATGGGGATTCGGAATGCCAAAGAAATGCGCTTTTGTCAGTACCTGGATGCCTaGACCTCTGAGGCCGATCCA | + |
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Preference number: 4 (lower is better) Translates to: LRNPGSMGIRNAKEMRFCQYLDA*TSEADP Trigger: TGGATCGGCCTCAGAGGTGCAGGCATCCAGGTACTG...ACAAAAGCGCATTTCTTTGGCATTCCGAATCCCCATCGACCCAGGGTTCCGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| CDS-3UTR GCA 90 bp | CTGCATACCCTCTCCTATAGGGCACCCTCCCCCTGTATACAAAATCTCAGAGATTGGTTCGGGACCGCTTaGCATCCGTCTCGTGGCTCA | + |
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Preference number: 4 (lower is better) Translates to: LHTLSYRAPSPCIQNLRDWFGTA*HPSRGS Trigger: TGAGCCACGAGACGGATGGCAAGCGGTCCCGAACCA...ATCTCTGAGATTTTGTATACAGGGGGAGGGTGCCCTATAGGAGAGGGTATGCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| CDS-3UTR CCA 90 bp | CTACAAGAATGTGCCCCGGGCCTGGGGTGCTCAGCTGAGCTGAGGCAAGACAGGTATAGGCAGGGATATTaGGGCTCTGCTTATAGAATG | + |
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Preference number: 4 (lower is better) Translates to: LQECAPGLGCSAELRQDRYRQGY*GSAYRM Trigger: CATTCTATAAGCAGAGCCCCAATATCCCTGCCTATA...CCTGTCTTGCCTCAGCTCAGCTGAGCACCCCAGGCCCGGGGCACATTCTTGTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| CDS-3UTR CCA 90 bp | AGGAAGGGCTTGGAGTCAATAAATAGTTGGGCAACTGCAATGGGGCAGGAAGGTCGCCGTAGCAGTACCTaGATGCCTGCACCTCTGAGG | + |
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Preference number: 4 (lower is better) Translates to: RKGLESINSWATAMGQEGRRSST*MPAPLR Trigger: CCTCAGAGGTGCAGGCATCCAGGTACTGCTACGGCG...ACCTTCCTGCCCCATTGCAGTTGCCCAACTATTTATTGACTCCAAGCCCTTCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| CDS-3UTR CCA 90 bp | CCCAATACATCTCAGAGCCTATTTAGACACATCAATTCAATGCATGCCCTAAACCCCCGTGGAGAGAGTTaGAAGGCGCAGGCGGTGGGA | + |
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Preference number: 4 (lower is better) Translates to: PNTSQSLFRHINSMHALNPRGES*KAQAVG Trigger: TCCCACCGCCTGCGCCTTCCAACTCTCTCCACGGGG...GTTTAGGGCATGCATTGAATTGATGTGTCTAAATAGGCTCTGAGATGTATTGGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| CDS-3UTR GCA 90 bp | ACCCTCTCCTATAGGGCACCCTCCCCCTGTATACAAAATCTCAGAGATATGATAGTCTCGTGGCTCATGTaGAGTTTGGTCATCCACGGG | + |
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Preference number: 4 (lower is better) Translates to: TLSYRAPSPCIQNLRDMIVSWLM*SLVIHG Trigger: CCCGTGGATGACCAAACTGCACATGAGCCACGAGAC...TATCATATCTCTGAGATTTTGTATACAGGGGGAGGGTGCCCTATAGGAGAGGGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| CDS-3UTR CCA 90 bp | CACAGCAAGTGGAAACAACAGTACAGGAGTCCTCAAGTGTACTCCCCTTCACCCGGCTCATGTGCAGTTTaGTCATCCACGGGTAAATCT | + |
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Preference number: 4 (lower is better) Translates to: HSKWKQQYRSPQVYSPSPGSCAV*SSTGKS Trigger: AGATTTACCCGTGGATGACCAAACTGCACATGAGCC...GGGTGAAGGGGAGTACACTTGAGGACTCCTGTACTGTTGTTTCCACTTGCTGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| CDS-3UTR TCA 90 bp | AGAACTCAGTTCCATTGTTCCCTATTCTTGCTGCTCCTAAAGGTGTTTAAAAATGGATGCCTGCACCTCTaGGGCCGATCCATAGTTCCC | + |
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Preference number: 4 (lower is better) Translates to: RTQFHCSLFLLLLKVFKNGCLHL*GRSIVP Trigger: GGGAACTATGGATCGGCCTCAGAGGTGCAGGCATCC...ATTTTTAAACACCTTTAGGAGCAGCAAGAATAGGGAACAATGGAACTGAGTTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| CDS-3UTR CCA 90 bp | CCCAATACATCTCAGAGCCTATTTAGACACATCAATTCAATGCATGCCCTAAACTTGCCATCCGTCTCGTaGCTCATGTGCAGTTTGGTC | + |
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Preference number: 4 (lower is better) Translates to: PNTSQSLFRHINSMHALNLPSVS*LMCSLV Trigger: GACCAAACTGCACATGAGCCACGAGACGGATGGCAA...GTTTAGGGCATGCATTGAATTGATGTGTCTAAATAGGCTCTGAGATGTATTGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| CDS-3UTR TCA 90 bp | AGAACTCAGTTCCATTGTTCCCTATTCTTGCTGCTCCTAAAGGTGTTTAAAAATCAGGCGGTGGGAAAGTaGTGCTTAAGTCCAATCCGC | + |
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Preference number: 4 (lower is better) Translates to: RTQFHCSLFLLLLKVFKNQAVGK*CLSPIR Trigger: GCGGATTGGACTTAAGCATCACTTTCCCACCGCCTG...ATTTTTAAACACCTTTAGGAGCAGCAAGAATAGGGAACAATGGAACTGAGTTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| CDS-3UTR TCA 90 bp | CCCAATACATCTCAGAGCCTATTTAGACACATCAATTCAATGCATGCCCTAAACGCTCTGCTTATAGAATaGATTGGCTACGTAGGAGCT | + |
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Preference number: 4 (lower is better) Translates to: PNTSQSLFRHINSMHALNALLIE*IGYVGA Trigger: AGCTCCTACGTAGCCAATTCATTCTATAAGCAGAGC...GTTTAGGGCATGCATTGAATTGATGTGTCTAAATAGGCTCTGAGATGTATTGGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| 3UTR CAA 72 bp | TTATTTGATATGACAAAATATAGTTTCAGGAAGGGCTaGGAGTCAATAAATAGTTGGGCAACTGCAATGGGG | + |
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Preference number: 4 (lower is better) Translates to: LFDMTKYSFRKG*ESINSWATAMG Trigger: CCCCATTGCAGTTGCCCAACTATTTATTGACTCCAAGCCCTTCCTGAAACTATATTTTGTCATATCAAATAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| CDS GCA 90 bp | CCTTCTGACTGTACATCCCAGGGTTCAGAGGAGCCGCTTCGTCTCTaGCCAGAGCGTGTCCCGGAGCGGCCGCGGCGCTGCAGGCGGGGC | + |
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Preference number: 5 (lower is better) Translates to: PSDCTSQGSEEPLRL*PERVPERPRRCRRG Trigger: GCCCCGCCTGCAGCGCCGCGGCCGCTCCGGGACACGCTCTGGGCAGAGACGAAGCGGCTCCTCTGAACCCTGGGATGTACAGTCAGAAGG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| CDS TCA 90 bp | CCACTGCTCTTAGCTCGCTCCTCCAGCGCCGGGCGAGCCGCCTTCTaGCTGTACATCCCAGGGTTCAGAGGAGCCGCTTCGTCTCTGCCC | + |
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Preference number: 5 (lower is better) Translates to: PLLLARSSSAGRAAF*LYIPGFRGAASSLP Trigger: GGGCAGAGACGAAGCGGCTCCTCTGAACCCTGGGATGTACAGTCAGAAGGCGGCTCGCCCGGCGCTGGAGGAGCGAGCTAAGAGCAGTGG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| CDS-3UTR CAA 90 bp | CTGCGGAACCCTGGGTCGATGGGGATTCGGAATGCCAAAGAAATGCGCTTTTGTCTGGTTCGGGACCGCTaGCCATCCGTCTCGTGGCTC | + |
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Preference number: 5 (lower is better) Translates to: LRNPGSMGIRNAKEMRFCLVRDR*PSVSWL Trigger: GAGCCACGAGACGGATGGCAAGCGGTCCCGAACCAG...ACAAAAGCGCATTTCTTTGGCATTCCGAATCCCCATCGACCCAGGGTTCCGCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| CDS TCA 90 bp | TGTCTACCCCGTGGAGAGAGTTGGAAGGCGCAGGCGGTGGGAAAGTaGTGCTTAAGTCCAATCCGCCGTAGCAGTACCTGGATGCCTGCA | + |
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Preference number: 5 (lower is better) Translates to: CLPRGESWKAQAVGK*CLSPIRRSSTWMPA Trigger: TGCAGGCATCCAGGTACTGCTACGGCGGATTGGACTTAAGCATCACTTTCCCACCGCCTGCGCCTTCCAACTCTCTCCACGGGGTAGACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| CDS-3UTR CAA 90 bp | CCTAGAAGACAGGGAGCAGTCTGTATGTTTTCTCTAAGGCAGGCACACACTGCAACCCCGTGGAGAGAGTaGGAAGGCGCAGGCGGTGGG | + |
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Preference number: 5 (lower is better) Translates to: PRRQGAVCMFSLRQAHTATPWRE*EGAGGG Trigger: CCCACCGCCTGCGCCTTCCAACTCTCTCCACGGGGT...TGCAGTGTGTGCCTGCCTTAGAGAAAACATACAGACTGCTCCCTGTCTTCTAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| CDS-3UTR CAA 90 bp | CCAAAGAAATGCGCTTTTGTCTGGGAGGCCCGGAGCCAGTGCTCTAGCCTCCGCTTGAGACACAAGTTGTaGGCAATCTCTATGCGCCTG | + |
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Preference number: 5 (lower is better) Translates to: PKKCAFVWEARSQCSSLRLRHKL*AISMRL Trigger: CAGGCGCATAGAGATTGCCAACAACTTGTGTCTCAA...GCGGAGGCTAGAGCACTGGCTCCGGGCCTCCCAGACAAAAGCGCATTTCTTTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| CDS-3UTR CAA 90 bp | CACAGCAAGTGGAAACAACAGTACAGGAGTCCTCAAGTGTACTCCCCTTCACCCTCGTTGAGACACAAGTaGTTGGCAATCTCTATGCGC | + |
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Preference number: 5 (lower is better) Translates to: HSKWKQQYRSPQVYSPSPSLRHK*LAISMR Trigger: GCGCATAGAGATTGCCAACAACTTGTGTCTCAACGA...GGGTGAAGGGGAGTACACTTGAGGACTCCTGTACTGTTGTTTCCACTTGCTGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| CDS-3UTR CAA 90 bp | CTGCGGAACCCTGGGTCGATGGGGATTCGGAATGCCAAAGAAATGCGCTTTTGTTTGATCTGTCTCTCGTaGAGACACAAGTTGTTGGCA | + |
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Preference number: 5 (lower is better) Translates to: LRNPGSMGIRNAKEMRFCLICLS*RHKLLA Trigger: TGCCAACAACTTGTGTCTCAACGAGAGACAGATCAA...ACAAAAGCGCATTTCTTTGGCATTCCGAATCCCCATCGACCCAGGGTTCCGCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| CDS-3UTR CAA 90 bp | CCCAATACATCTCAGAGCCTATTTAGACACATCAATTCAATGCATGCCCTAAACATAGTTCCCACAAGTTaGCATGTTATAGGCAGGGAT | + |
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Preference number: 5 (lower is better) Translates to: PNTSQSLFRHINSMHALNIVPTS*HVIGRD Trigger: ATCCCTGCCTATAACATGCAAACTTGTGGGAACTAT...GTTTAGGGCATGCATTGAATTGATGTGTCTAAATAGGCTCTGAGATGTATTGGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| CDS GCA 72 bp | TGTACATCCCAGGGTTCAGAGGAGCCGCTTCGTCTCTaGCCAGAGCGTGTCCCGGAGCGGCCGCGGCGCTGC | + |
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Preference number: 6 (lower is better) Translates to: CTSQGSEEPLRL*PERVPERPRRC Trigger: GCAGCGCCGCGGCCGCTCCGGGACACGCTCTGGGCAGAGACGAAGCGGCTCCTCTGAACCCTGGGATGTACA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| CDS GCA 72 bp | TGTGGCGGGGCCGGTGGCTGGCTCAGTCCGGCAGGCTaGCCTGTCTGCGCCTGCTCCTCTTTGATCTCCCCA | + |
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Preference number: 6 (lower is better) Translates to: CGGAGGWLSPAG*PVCACSSLISP Trigger: TGGGGAGATCAAAGAGGAGCAGGCGCAGACAGGGCAGCCTGCCGGACTGAGCCAGCCACCGGCCCCGCCACA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| CDS TCA 72 bp | TTAGCTCGCTCCTCCAGCGCCGGGCGAGCCGCCTTCTaGCTGTACATCCCAGGGTTCAGAGGAGCCGCTTCG | + |
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Preference number: 6 (lower is better) Translates to: LARSSSAGRAAF*LYIPGFRGAAS Trigger: CGAAGCGGCTCCTCTGAACCCTGGGATGTACAGTCAGAAGGCGGCTCGCCCGGCGCTGGAGGAGCGAGCTAA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| CDS CCA 72 bp | GCTCATGTGCAGTTTGGTCATCCACGGGTAAATCTGTaGCGGGGCCGGTGGCTGGCTCAGTCCGGCAGGCTG | + |
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Preference number: 6 (lower is better) Translates to: AHVQFGHPRVNL*RGRWLAQSGRL Trigger: CAGCCTGCCGGACTGAGCCAGCCACCGGCCCCGCCACAGATTTACCCGTGGATGACCAAACTGCACATGAGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| CDS CCA 72 bp | ACCGCTTGCCATCCGTCTCGTGGCTCATGTGCAGTTTaGTCATCCACGGGTAAATCTGTGGCGGGGCCGGTG | + |
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Preference number: 6 (lower is better) Translates to: TACHPSRGSCAV*SSTGKSVAGPV Trigger: CACCGGCCCCGCCACAGATTTACCCGTGGATGACCAAACTGCACATGAGCCACGAGACGGATGGCAAGCGGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| CDS GCA 72 bp | GGGTCTGGTAGCGCGTGTAACTGGTTCGGGACCGCTTaGCATCCGTCTCGTGGCTCATGTGCAGTTTGGTCA | + |
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Preference number: 6 (lower is better) Translates to: GSGSACNWFGTA*HPSRGSCAVWS Trigger: TGACCAAACTGCACATGAGCCACGAGACGGATGGCAAGCGGTCCCGAACCAGTTACACGCGCTACCAGACCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| CDS TCA 72 bp | CGTGGAGAGAGTTGGAAGGCGCAGGCGGTGGGAAAGTaGTGCTTAAGTCCAATCCGCCGTAGCAGTACCTGG | + |
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Preference number: 6 (lower is better) Translates to: RGESWKAQAVGK*CLSPIRRSSTW Trigger: CCAGGTACTGCTACGGCGGATTGGACTTAAGCATCACTTTCCCACCGCCTGCGCCTTCCAACTCTCTCCACG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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| CDS TCA 72 bp | CAATCCGCCGTAGCAGTACCTGGATGCCTGCACCTCTaGGGCCGATCCATAGTTCCCACAAGTTTGCATGTT | + |
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Preference number: 6 (lower is better) Translates to: QSAVAVPGCLHL*GRSIVPTSLHV Trigger: AACATGCAAACTTGTGGGAACTATGGATCGGCCTCAGAGGTGCAGGCATCCAGGTACTGCTACGGCGGATTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001709.3 |
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