Pregenerated sensors for HOXC4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000075394Ensembl transcript IDs: ENSMUST00000100164.5, ENSMUST00000165375.3
Found 108 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTTGCTGCTCCGGCGGCGTGGCGCTCTGGGAGTGGTCTTCAGAAGTaGCGGGGGTGGCTGCCGAGAGGGTGCTGGGCGCAGCGCCGGCCG | + |
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Preference number: 1 (lower is better) Translates to: VAAPAAWRSGSGLQK*RGWLPRGCWAQRRP Trigger: CGGCCGGCGCTGCGCCCAGCACCCTCTCGGCAGCCACCCCCGGCACTTCTGAAGACCACTCCCAGAGCGCCACGCCGCCGGAGCAGCAAC 74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| 3UTR CCA 90 bp | GGGAGTGGTCTTCAGAAGTGCCGGGGGTGGCTGCCGAGAGGGTGCTaGGCGCAGCGCCGGCCGGGGGCGCTGACCTCACTTTGGTGTTGG | + |
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Preference number: 1 (lower is better) Translates to: GSGLQKCRGWLPRGC*AQRRPGALTSLWCW Trigger: CCAACACCAAAGTGAGGTCAGCGCCCCCGGCCGGCGCTGCGCCCAGCACCCTCTCGGCAGCCACCCCCGGCACTTCTGAAGACCACTCCC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| 3UTR GCA 90 bp | TCTGGGAGTGGTCTTCAGAAGTGCCGGGGGTGGCTGCCGAGAGGGTaGTGGGCGCAGCGCCGGCCGGGGGCGCTGACCTCACTTTGGTGT | + |
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Preference number: 1 (lower is better) Translates to: SGSGLQKCRGWLPRG*WAQRRPGALTSLWC Trigger: ACACCAAAGTGAGGTCAGCGCCCCCGGCCGGCGCTGCGCCCAGCACCCTCTCGGCAGCCACCCCCGGCACTTCTGAAGACCACTCCCAGA 70% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| 3UTR CCA 90 bp | ATGTCCTCTGCCCGTTGCTGCTCCGGCGGCGTGGCGCTCTGGGAGTaGTCTTCAGAAGTGCCGGGGGTGGCTGCCGAGAGGGTGCTGGGC | + |
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Preference number: 1 (lower is better) Translates to: MSSARCCSGGVALWE*SSEVPGVAAERVLG Trigger: GCCCAGCACCCTCTCGGCAGCCACCCCCGGCACTTCTGAAGACCACTCCCAGAGCGCCACGCCGCCGGAGCAGCAACGGGCAGAGGACAT 70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| 3UTR CCA 90 bp | CTGGTGATGTCCTCTGCCCGTTGCTGCTCCGGCGGCGTGGCGCTCTaGGAGTGGTCTTCAGAAGTGCCGGGGGTGGCTGCCGAGAGGGTG | + |
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Preference number: 1 (lower is better) Translates to: LVMSSARCCSGGVAL*EWSSEVPGVAAERV Trigger: CACCCTCTCGGCAGCCACCCCCGGCACTTCTGAAGACCACTCCCAGAGCGCCACGCCGCCGGAGCAGCAACGGGCAGAGGACATCACCAG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| 3UTR-3UTR GCA 90 bp | ATGTCTTATAACCTGGTGATGTCCTCTGCCCGTTGCTGCTCCGGCGGCGTGGCGAGTGCCGGGGGTGGCTaGCGAGAGGGTGCTGGGCGC | + |
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Preference number: 2 (lower is better) Translates to: MSYNLVMSSARCCSGGVASAGGG*REGAGR Trigger: GCGCCCAGCACCCTCTCGGCAGCCACCCCCGGCACT...CGCCACGCCGCCGGAGCAGCAACGGGCAGAGGACATCACCAGGTTATAAGACAT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| 3UTR-3UTR CCA 90 bp | GTTGCTGCTCCGGCGGCGTGGCGCTCTGGGAGTGGTCTTCAGAAGTGCCGGGGGACCTCACTTTGGTGTTaGGGAGTCGGTGGTCCTTCT | + |
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Preference number: 2 (lower is better) Translates to: VAAPAAWRSGSGLQKCRGTSLWC*GVGGPS Trigger: AGAAGGACCACCGACTCCCCAACACCAAAGTGAGGT...CCCCCGGCACTTCTGAAGACCACTCCCAGAGCGCCACGCCGCCGGAGCAGCAAC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| 3UTR-3UTR TCA 90 bp | TCTGCCCGTTGCTGCTCCGGCGGCGTGGCGCTCTGGGAGTGGTCTTCAGAAGTGTTGTCTGTTTGGAACTaGCAAGGGAGGAGGCAAGAG | + |
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Preference number: 2 (lower is better) Translates to: SARCCSGGVALWEWSSEVLSVWN*QGRRQE Trigger: CTCTTGCCTCCTCCCTTGTCAGTTCCAAACAGACAA...CACTTCTGAAGACCACTCCCAGAGCGCCACGCCGCCGGAGCAGCAACGGGCAGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| 3UTR-3UTR CCA 90 bp | ATGTCTTATAACCTGGTGATGTCCTCTGCCCGTTGCTGCTCCGGCGGCGTGGCGGAGAGGCACAGCGAGTaGGCGATCTCGATCCTTCTC | + |
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Preference number: 2 (lower is better) Translates to: MSYNLVMSSARCCSGGVAERHSE*AISILL Trigger: GAGAAGGATCGAGATCGCCCACTCGCTGTGCCTCTC...CGCCACGCCGCCGGAGCAGCAACGGGCAGAGGACATCACCAGGTTATAAGACAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| 3UTR-3UTR CCA 90 bp | AACCTGGTGATGTCCTCTGCCCGTTGCTGCTCCGGCGGCGTGGCGCTCTGGGAGGTGTTGGGGAGTCGGTaGTCCTTCTTCCATTTCATA | + |
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Preference number: 2 (lower is better) Translates to: NLVMSSARCCSGGVALWEVLGSR*SFFHFI Trigger: TATGAAATGGAAGAAGGACCACCGACTCCCCAACAC...CTCCCAGAGCGCCACGCCGCCGGAGCAGCAACGGGCAGAGGACATCACCAGGTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| 3UTR-3UTR TCA 90 bp | ATGCTAAGACAACACCACATGCTTAAAGGGGTCTTTAACAGCAAGGGAAAAGGGGCCGGCCGGGGGCGCTaGCCTCACTTTGGTGTTGGG | + |
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Preference number: 2 (lower is better) Translates to: MLRQHHMLKGVFNSKGKGAGRGR*PHFGVG Trigger: CCCAACACCAAAGTGAGGTCAGCGCCCCCGGCCGGC...CCCTTTTCCCTTGCTGTTAAAGACCCCTTTAAGCATGTGGTGTTGTCTTAGCAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| 3UTR-3UTR CCA 90 bp | ATGCTAAGACAACACCACATGCTTAAAGGGGTCTTTAACAGCAAGGGAAAAGGGGTGGCGCTCTGGGAGTaGTCTTCAGAAGTGCCGGGG | + |
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Preference number: 2 (lower is better) Translates to: MLRQHHMLKGVFNSKGKGVALWE*SSEVPG Trigger: CCCCGGCACTTCTGAAGACCACTCCCAGAGCGCCAC...CCCTTTTCCCTTGCTGTTAAAGACCCCTTTAAGCATGTGGTGTTGTCTTAGCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| 3UTR-3UTR GCA 90 bp | ATGCTAAGACAACACCACATGCTTAAAGGGGTCTTTAACAGCAAGGGAAAAGGGAGTGGTCTTCAGAAGTaGCGGGGGTGGCTGCCGAGA | + |
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Preference number: 2 (lower is better) Translates to: MLRQHHMLKGVFNSKGKGSGLQK*RGWLPR Trigger: TCTCGGCAGCCACCCCCGGCACTTCTGAAGACCACT...CCCTTTTCCCTTGCTGTTAAAGACCCCTTTAAGCATGTGGTGTTGTCTTAGCAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| 3UTR-3UTR TCA 90 bp | AAAAACACAATAACCACGATGAGGGTAGGGGGAGCATCTACCTACAGACTGCCTTTGTCTGTTTGGAACTaGCAAGGGAGGAGGCAAGAG | + |
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Preference number: 2 (lower is better) Translates to: KNTITTMRVGGASTYRLPLSVWN*QGRRQE Trigger: CTCTTGCCTCCTCCCTTGTCAGTTCCAAACAGACAA...AGGCAGTCTGTAGGTAGATGCTCCCCCTACCCTCATCGTGGTTATTGTGTTTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000100164.5 |
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| 3UTR-3UTR TCA 90 bp | AAAAACACAATAACCACGATGAGGGTAGGGGGAGCATCTACCTACAGACTGCCTTTTCCTCATTTCCCCTaGAATTCACCCAAACCAGAC | + |
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Preference number: 2 (lower is better) Translates to: KNTITTMRVGGASTYRLPFPHFP*NSPKPD Trigger: GTCTGGTTTGGGTGAATTTCAGGGGAAATGAGGAAA...AGGCAGTCTGTAGGTAGATGCTCCCCCTACCCTCATCGTGGTTATTGTGTTTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000100164.5 |
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| 3UTR-3UTR TCA 90 bp | ATGCTAAGACAACACCACATGCTTAAAGGGGTCTTTAACAGCAAGGGAAAAGGGGAGGAGGAGAGAGGATaGGACTCCACTTACAAATCT | + |
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Preference number: 2 (lower is better) Translates to: MLRQHHMLKGVFNSKGKGEEERG*DSTYKS Trigger: AGATTTGTAAGTGGAGTCTCATCCTCTCTCCTCCTC...CCCTTTTCCCTTGCTGTTAAAGACCCCTTTAAGCATGTGGTGTTGTCTTAGCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000100164.5 |
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| 3UTR-3UTR CCA 90 bp | AAATTCACCCAAACCAGACCATCACACCTTGCAATATATAATTTTTGCAGCTTTGCGCTGACCTCACTTTaGTGTTGGGGAGTCGGTGGT | + |
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Preference number: 2 (lower is better) Translates to: KFTQTRPSHLAIYNFCSFALTSL*CWGVGG Trigger: ACCACCGACTCCCCAACACCAAAGTGAGGTCAGCGC...AAAGCTGCAAAAATTATATATTGCAAGGTGTGATGGTCTGGTTTGGGTGAATTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| 3UTR-3UTR CCA 90 bp | AAATTCACCCAAACCAGACCATCACACCTTGCAATATATAATTTTTGCAGCTTTCCCCTCCGTTATAATTaGGGTTCACCATTCTCGCTC | + |
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Preference number: 2 (lower is better) Translates to: KFTQTRPSHLAIYNFCSFPLRYN*GSPFSL Trigger: GAGCGAGAATGGTGAACCCCAATTATAACGGAGGGG...AAAGCTGCAAAAATTATATATTGCAAGGTGTGATGGTCTGGTTTGGGTGAATTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| 3UTR GCA 72 bp | CCGGCGGCGTGGCGCTCTGGGAGTGGTCTTCAGAAGTaGCGGGGGTGGCTGCCGAGAGGGTGCTGGGCGCAG | + |
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Preference number: 3 (lower is better) Translates to: PAAWRSGSGLQK*RGWLPRGCWAQ Trigger: CTGCGCCCAGCACCCTCTCGGCAGCCACCCCCGGCACTTCTGAAGACCACTCCCAGAGCGCCACGCCGCCGG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| 3UTR CCA 72 bp | CTTCAGAAGTGCCGGGGGTGGCTGCCGAGAGGGTGCTaGGCGCAGCGCCGGCCGGGGGCGCTGACCTCACTT | + |
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Preference number: 3 (lower is better) Translates to: LQKCRGWLPRGC*AQRRPGALTSL Trigger: AAGTGAGGTCAGCGCCCCCGGCCGGCGCTGCGCCCAGCACCCTCTCGGCAGCCACCCCCGGCACTTCTGAAG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| 3UTR CCA 72 bp | TGGCGCTCTGGGAGTGGTCTTCAGAAGTGCCGGGGGTaGCTGCCGAGAGGGTGCTGGGCGCAGCGCCGGCCG | + |
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Preference number: 3 (lower is better) Translates to: WRSGSGLQKCRG*LPRGCWAQRRP Trigger: CGGCCGGCGCTGCGCCCAGCACCCTCTCGGCAGCCACCCCCGGCACTTCTGAAGACCACTCCCAGAGCGCCA 74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| 3UTR CCA 72 bp | GCCCGTTGCTGCTCCGGCGGCGTGGCGCTCTGGGAGTaGTCTTCAGAAGTGCCGGGGGTGGCTGCCGAGAGG | + |
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Preference number: 3 (lower is better) Translates to: ARCCSGGVALWE*SSEVPGVAAER Trigger: CCTCTCGGCAGCCACCCCCGGCACTTCTGAAGACCACTCCCAGAGCGCCACGCCGCCGGAGCAGCAACGGGC 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| 3UTR CCA 72 bp | TCCTCTGCCCGTTGCTGCTCCGGCGGCGTGGCGCTCTaGGAGTGGTCTTCAGAAGTGCCGGGGGTGGCTGCC | + |
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Preference number: 3 (lower is better) Translates to: SSARCCSGGVAL*EWSSEVPGVAA Trigger: GGCAGCCACCCCCGGCACTTCTGAAGACCACTCCCAGAGCGCCACGCCGCCGGAGCAGCAACGGGCAGAGGA 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| 3UTR-3UTR CAA 90 bp | CGGCGTGGCGCTCTGGGAGTGGTCTTCAGAAGTGCCGGGGGTGGCTGCCGAGAGGACCTCACTTTGGTGTaGGGGAGTCGGTGGTCCTTC | + |
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Preference number: 3 (lower is better) Translates to: RRGALGVVFRSAGGGCREDLTLV*GSRWSF Trigger: GAAGGACCACCGACTCCCCAACACCAAAGTGAGGTC...CTCTCGGCAGCCACCCCCGGCACTTCTGAAGACCACTCCCAGAGCGCCACGCCG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| 3UTR CCA 72 bp | TGGGCGCAGCGCCGGCCGGGGGCGCTGACCTCACTTTaGTGTTGGGGAGTCGGTGGTCCTTCTTCCATTTCA | + |
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Preference number: 3 (lower is better) Translates to: WAQRRPGALTSL*CWGVGGPSSIS Trigger: TGAAATGGAAGAAGGACCACCGACTCCCCAACACCAAAGTGAGGTCAGCGCCCCCGGCCGGCGCTGCGCCCA 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| 3UTR CCA 72 bp | CAGCGCCGGCCGGGGGCGCTGACCTCACTTTGGTGTTaGGGAGTCGGTGGTCCTTCTTCCATTTCATACGAC | + |
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Preference number: 3 (lower is better) Translates to: QRRPGALTSLWC*GVGGPSSISYD Trigger: GTCGTATGAAATGGAAGAAGGACCACCGACTCCCCAACACCAAAGTGAGGTCAGCGCCCCCGGCCGGCGCTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| 3UTR-3UTR CAA 90 bp | GTTGCTGCTCCGGCGGCGTGGCGCTCTGGGAGTGGTCTTCAGAAGTGCCGGGGGGGGCAAGGGGCTTGTTaGTTTATCTGTTTTGTCTGT | + |
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Preference number: 3 (lower is better) Translates to: VAAPAAWRSGSGLQKCRGGQGAC*FICFVC Trigger: ACAGACAAAACAGATAAACAAACAAGCCCCTTGCCC...CCCCCGGCACTTCTGAAGACCACTCCCAGAGCGCCACGCCGCCGGAGCAGCAAC 60% GC, longest homopolymer 8 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| 3UTR GCA 72 bp | ATGTCTTATAACCTGGTGATGTCCTCTGCCCGTTGCTaGTCCGGCGGCGTGGCGCTCTGGGAGTGGTCTTCA | + |
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Preference number: 3 (lower is better) Translates to: MSYNLVMSSARC*SGGVALWEWSS Trigger: TGAAGACCACTCCCAGAGCGCCACGCCGCCGGAGCAGCAACGGGCAGAGGACATCACCAGGTTATAAGACAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| 3UTR GCA 72 bp | GTTATGTCTTATAACCTGGTGATGTCCTCTGCCCGTTaGTGCTCCGGCGGCGTGGCGCTCTGGGAGTGGTCT | + |
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Preference number: 3 (lower is better) Translates to: VMSYNLVMSSAR*CSGGVALWEWS Trigger: AGACCACTCCCAGAGCGCCACGCCGCCGGAGCAGCAACGGGCAGAGGACATCACCAGGTTATAAGACATAAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| 3UTR-3UTR CAA 90 bp | TCTGCCCGTTGCTGCTCCGGCGGCGTGGCGCTCTGGGAGTGGTCTTCAGAAGTGATCTGTTTTGTCTGTTaGGAACTGACAAGGGAGGAG | + |
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Preference number: 3 (lower is better) Translates to: SARCCSGGVALWEWSSEVICFVC*ELTREE Trigger: CTCCTCCCTTGTCAGTTCCAAACAGACAAAACAGAT...CACTTCTGAAGACCACTCCCAGAGCGCCACGCCGCCGGAGCAGCAACGGGCAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| 3UTR-3UTR CAA 90 bp | ATGCTAAGACAACACCACATGCTTAAAGGGGTCTTTAACAGCAAGGGAAAAGGGGGCGCTGACCTCACTTaGGTGTTGGGGAGTCGGTGG | + |
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Preference number: 3 (lower is better) Translates to: MLRQHHMLKGVFNSKGKGGADLT*VLGSRW Trigger: CCACCGACTCCCCAACACCAAAGTGAGGTCAGCGCC...CCCTTTTCCCTTGCTGTTAAAGACCCCTTTAAGCATGTGGTGTTGTCTTAGCAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| 3UTR-3UTR CAA 90 bp | ATGCTAAGACAACACCACATGCTTAAAGGGGTCTTTAACAGCAAGGGAAAAGGGATCTGTTTTGTCTGTTaGGAACTGACAAGGGAGGAG | + |
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Preference number: 3 (lower is better) Translates to: MLRQHHMLKGVFNSKGKGICFVC*ELTREE Trigger: CTCCTCCCTTGTCAGTTCCAAACAGACAAAACAGAT...CCCTTTTCCCTTGCTGTTAAAGACCCCTTTAAGCATGTGGTGTTGTCTTAGCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000100164.5 ENSMUST00000165375.3 |
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| 3UTR-3UTR CAA 90 bp | ATGCTAAGACAACACCACATGCTTAAAGGGGTCTTTAACAGCAAGGGAAAAGGGGGGCAAGGGGCTTGTTaGTTTATCTGTTTTGTCTGT | + |
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Preference number: 3 (lower is better) Translates to: MLRQHHMLKGVFNSKGKGGQGAC*FICFVC Trigger: ACAGACAAAACAGATAAACAAACAAGCCCCTTGCCC...CCCTTTTCCCTTGCTGTTAAAGACCCCTTTAAGCATGTGGTGTTGTCTTAGCAT 44% GC, longest homopolymer 6 nt, total homopolymer stretches 22 nt. Matches the following 2 transcripts: ENSMUST00000100164.5 ENSMUST00000165375.3 |
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| CDS-3UTR CCA 90 bp | CGGCGTGGCGCTCTGGGAGTGGTCTTCAGAAGTGCCGGGGGTGGCTGCCGAGAGGCCTGGGCCGGCCCGTaGGCTCGCGAATTGCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: RRGALGVVFRSAGGGCREAWAGP*ARELPG Trigger: GCCTGGCAATTCGCGAGCCCACGGGCCGGCCCAGGC...CTCTCGGCAGCCACCCCCGGCACTTCTGAAGACCACTCCCAGAGCGCCACGCCG 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| CDS-3UTR CCA 90 bp | CGGCGTGGCGCTCTGGGAGTGGTCTTCAGAAGTGCCGGGGGTGGCTGCCGAGAGGCGGCGCTGGAGGGATaGTCAGGGGCTGGCTGGCTG | + |
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Preference number: 4 (lower is better) Translates to: RRGALGVVFRSAGGGCREAALEG*SGAGWL Trigger: CAGCCAGCCAGCCCCTGACCATCCCTCCAGCGCCGC...CTCTCGGCAGCCACCCCCGGCACTTCTGAAGACCACTCCCAGAGCGCCACGCCG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| CDS-3UTR TCA 90 bp | TGCCCGTTGCTGCTCCGGCGGCGTGGCGCTCTGGGAGTGGTCTTCAGAAGTGCCGGAGGCAGAGGTGCCTaGGAGAGGCGCCGGCTCGCA | + |
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Preference number: 4 (lower is better) Translates to: CPLLLRRRGALGVVFRSAGGRGA*ERRRLA Trigger: TGCGAGCCGGCGCCTCTCTCAGGCACCTCTGCCTCC...GGCACTTCTGAAGACCACTCCCAGAGCGCCACGCCGCCGGAGCAGCAACGGGCA 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| CDS-3UTR GCA 90 bp | CGGCGTGGCGCTCTGGGAGTGGTCTTCAGAAGTGCCGGGGGTGGCTGCCGAGAGCGTGGGCTCGCGAATTaGCAGGCCCCTGGAGACTGG | + |
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Preference number: 4 (lower is better) Translates to: RRGALGVVFRSAGGGCRERGLAN*QAPGDW Trigger: CCAGTCTCCAGGGGCCTGGCAATTCGCGAGCCCACG...CTCTCGGCAGCCACCCCCGGCACTTCTGAAGACCACTCCCAGAGCGCCACGCCG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| CDS-3UTR CCA 90 bp | TCTGCCCGTTGCTGCTCCGGCGGCGTGGCGCTCTGGGAGTGGTCTTCAGAAGTGGGGATGGTCAGGGGCTaGCTGGCTGCAGGCTGGCGG | + |
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Preference number: 4 (lower is better) Translates to: SARCCSGGVALWEWSSEVGMVRG*LAAGWR Trigger: CCGCCAGCCTGCAGCCAGCCAGCCCCTGACCATCCC...CACTTCTGAAGACCACTCCCAGAGCGCCACGCCGCCGGAGCAGCAACGGGCAGA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| 3UTR CAA 72 bp | CTGGGCGCAGCGCCGGCCGGGGGCGCTGACCTCACTTaGGTGTTGGGGAGTCGGTGGTCCTTCTTCCATTTC | + |
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Preference number: 4 (lower is better) Translates to: LGAAPAGGADLT*VLGSRWSFFHF Trigger: GAAATGGAAGAAGGACCACCGACTCCCCAACACCAAAGTGAGGTCAGCGCCCCCGGCCGGCGCTGCGCCCAG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| CDS-3UTR CCA 90 bp | ATGTCTTATAACCTGGTGATGTCCTCTGCCCGTTGCTGCTCCGGCGGCGTGGCGTGGTCAGGGGCTGGCTaGCTGCAGGCTGGCGGGGCT | + |
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Preference number: 4 (lower is better) Translates to: MSYNLVMSSARCCSGGVAWSGAG*LQAGGA Trigger: AGCCCCGCCAGCCTGCAGCCAGCCAGCCCCTGACCA...CGCCACGCCGCCGGAGCAGCAACGGGCAGAGGACATCACCAGGTTATAAGACAT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| CDS-3UTR CCA 90 bp | ATGTCTTATAACCTGGTGATGTCCTCTGCCCGTTGCTGCTCCGGCGGCGTGGCGAGGGCGCGGAGGCGGTaGTGGGTACAGCTCCTGGTG | + |
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Preference number: 4 (lower is better) Translates to: MSYNLVMSSARCCSGGVARARRR*WVQLLV Trigger: CACCAGGAGCTGTACCCACCACCGCCTCCGCGCCCT...CGCCACGCCGCCGGAGCAGCAACGGGCAGAGGACATCACCAGGTTATAAGACAT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| CDS-3UTR TCA 90 bp | AACCTGGTGATGTCCTCTGCCCGTTGCTGCTCCGGCGGCGTGGCGCTCTGGGAGTACAGCTCCTGGTGGTaGTGCTGGAATCCCGATTCC | + |
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Preference number: 4 (lower is better) Translates to: NLVMSSARCCSGGVALWEYSSWW*CWNPDS Trigger: GGAATCGGGATTCCAGCATCACCACCAGGAGCTGTA...CTCCCAGAGCGCCACGCCGCCGGAGCAGCAACGGGCAGAGGACATCACCAGGTT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| CDS-3UTR CCA 90 bp | AACCTGGTGATGTCCTCTGCCCGTTGCTGCTCCGGCGGCGTGGCGCTCTGGGAGGGAATCCCGATTCCCTaGTCCGGCCGTAATATTCCG | + |
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Preference number: 4 (lower is better) Translates to: NLVMSSARCCSGGVALWEGIPIP*SGRNIP Trigger: CGGAATATTACGGCCGGACCAGGGAATCGGGATTCC...CTCCCAGAGCGCCACGCCGCCGGAGCAGCAACGGGCAGAGGACATCACCAGGTT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| CDS-3UTR CCA 90 bp | TGCCCGTTGCTGCTCCGGCGGCGTGGCGCTCTGGGAGTGGTCTTCAGAAGTGCCGAATTGCCAGGCCCCTaGAGACTGGTGCAGCTATAC | + |
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Preference number: 4 (lower is better) Translates to: CPLLLRRRGALGVVFRSAELPGP*RLVQLY Trigger: GTATAGCTGCACCAGTCTCCAGGGGCCTGGCAATTC...GGCACTTCTGAAGACCACTCCCAGAGCGCCACGCCGCCGGAGCAGCAACGGGCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| CDS-3UTR CCA 90 bp | ATGTCTTATAACCTGGTGATGTCCTCTGCCCGTTGCTGCTCCGGCGGCGTGGCGTGCGATTTCTCAGGGTaGTGGTGGCCCGCCTGGGCC | + |
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Preference number: 4 (lower is better) Translates to: MSYNLVMSSARCCSGGVACDFSG*WWPAWA Trigger: GGCCCAGGCGGGCCACCACCACCCTGAGAAATCGCA...CGCCACGCCGCCGGAGCAGCAACGGGCAGAGGACATCACCAGGTTATAAGACAT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| 3UTR CAA 72 bp | GCAGCGCCGGCCGGGGGCGCTGACCTCACTTTGGTGTaGGGGAGTCGGTGGTCCTTCTTCCATTTCATACGA | + |
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Preference number: 4 (lower is better) Translates to: AAPAGGADLTLV*GSRWSFFHFIR Trigger: TCGTATGAAATGGAAGAAGGACCACCGACTCCCCAACACCAAAGTGAGGTCAGCGCCCCCGGCCGGCGCTGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
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| CDS-3UTR CCA 90 bp | ATGTCTTATAACCTGGTGATGTCCTCTGCCCGTTGCTGCTCCGGCGGCGTGGCGCAGGCCCCTGGAGACTaGTGCAGCTATACTGACGCT | + |
|
Preference number: 4 (lower is better) Translates to: MSYNLVMSSARCCSGGVAQAPGD*CSYTDA Trigger: AGCGTCAGTATAGCTGCACCAGTCTCCAGGGGCCTG...CGCCACGCCGCCGGAGCAGCAACGGGCAGAGGACATCACCAGGTTATAAGACAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
||
| CDS-3UTR CCA 90 bp | AAAAACACAATAACCACGATGAGGGTAGGGGGAGCATCTACCTACAGACTGCCTGCCTGGGCCGGCCCGTaGGCTCGCGAATTGCCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: KNTITTMRVGGASTYRLPAWAGP*ARELPG Trigger: GCCTGGCAATTCGCGAGCCCACGGGCCGGCCCAGGC...AGGCAGTCTGTAGGTAGATGCTCCCCCTACCCTCATCGTGGTTATTGTGTTTTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000100164.5 |
||
| CDS-3UTR CCA 90 bp | AAAAACACAATAACCACGATGAGGGTAGGGGGAGCATCTACCTACAGACTGCCTTTCTCAGGGTGGTGGTaGCCCGCCTGGGCCGGCCCG | + |
|
Preference number: 4 (lower is better) Translates to: KNTITTMRVGGASTYRLPFSGWW*PAWAGP Trigger: CGGGCCGGCCCAGGCGGGCCACCACCACCCTGAGAA...AGGCAGTCTGTAGGTAGATGCTCCCCCTACCCTCATCGTGGTTATTGTGTTTTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000100164.5 |
||
| CDS-3UTR TCA 90 bp | AAAAACACAATAACCACGATGAGGGTAGGGGGAGCATCTACCTACAGACTGCCTGGAGGCAGAGGTGCCTaGGAGAGGCGCCGGCTCGCA | + |
|
Preference number: 4 (lower is better) Translates to: KNTITTMRVGGASTYRLPGGRGA*ERRRLA Trigger: TGCGAGCCGGCGCCTCTCTCAGGCACCTCTGCCTCC...AGGCAGTCTGTAGGTAGATGCTCCCCCTACCCTCATCGTGGTTATTGTGTTTTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000100164.5 |
||
| CDS-3UTR TCA 90 bp | AAAAACACAATAACCACGATGAGGGTAGGGGGAGCATCTACCTACAGACTGCCTGCCGGCCGGGGGCGCTaGCCTCACTTTGGTGTTGGG | + |
|
Preference number: 4 (lower is better) Translates to: KNTITTMRVGGASTYRLPAGRGR*PHFGVG Trigger: CCCAACACCAAAGTGAGGTCAGCGCCCCCGGCCGGC...AGGCAGTCTGTAGGTAGATGCTCCCCCTACCCTCATCGTGGTTATTGTGTTTTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000100164.5 |
||
| CDS-3UTR CCA 90 bp | AAAAACACAATAACCACGATGAGGGTAGGGGGAGCATCTACCTACAGACTGCCTGGGATGGTCAGGGGCTaGCTGGCTGCAGGCTGGCGG | + |
|
Preference number: 4 (lower is better) Translates to: KNTITTMRVGGASTYRLPGMVRG*LAAGWR Trigger: CCGCCAGCCTGCAGCCAGCCAGCCCCTGACCATCCC...AGGCAGTCTGTAGGTAGATGCTCCCCCTACCCTCATCGTGGTTATTGTGTTTTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000100164.5 |
||
| CDS-3UTR CCA 90 bp | AAAAACACAATAACCACGATGAGGGTAGGGGGAGCATCTACCTACAGACTGCCTGCGGCGCTGGAGGGATaGTCAGGGGCTGGCTGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: KNTITTMRVGGASTYRLPAALEG*SGAGWL Trigger: CAGCCAGCCAGCCCCTGACCATCCCTCCAGCGCCGC...AGGCAGTCTGTAGGTAGATGCTCCCCCTACCCTCATCGTGGTTATTGTGTTTTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000100164.5 |
||
| CDS-3UTR GCA 90 bp | ATGCTAAGACAACACCACATGCTTAAAGGGGTCTTTAACAGCAAGGGAAAAGGGAGTGCCGGGGGTGGCTaGCGAGAGGGTGCTGGGCGC | + |
|
Preference number: 4 (lower is better) Translates to: MLRQHHMLKGVFNSKGKGSAGGG*REGAGR Trigger: GCGCCCAGCACCCTCTCGGCAGCCACCCCCGGCACT...CCCTTTTCCCTTGCTGTTAAAGACCCCTTTAAGCATGTGGTGTTGTCTTAGCAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000100164.5 |
||
| CDS-3UTR CCA 90 bp | AACCTGGTGATGTCCTCTGCCCGTTGCTGCTCCGGCGGCGTGGCGCTCTGGGAGCGAATATTCTTCGCATaGAGGAAATTTCGGATCGAT | + |
|
Preference number: 4 (lower is better) Translates to: NLVMSSARCCSGGVALWERIFFA*RKFRID Trigger: ATCGATCCGAAATTTCCTCCATGCGAAGAATATTCG...CTCCCAGAGCGCCACGCCGCCGGAGCAGCAACGGGCAGAGGACATCACCAGGTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
||
| CDS-3UTR CCA 90 bp | ATGCTAAGACAACACCACATGCTTAAAGGGGTCTTTAACAGCAAGGGAAAAGGGTTCTCAGGGTGGTGGTaGCCCGCCTGGGCCGGCCCG | + |
|
Preference number: 4 (lower is better) Translates to: MLRQHHMLKGVFNSKGKGFSGWW*PAWAGP Trigger: CGGGCCGGCCCAGGCGGGCCACCACCACCCTGAGAA...CCCTTTTCCCTTGCTGTTAAAGACCCCTTTAAGCATGTGGTGTTGTCTTAGCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000100164.5 ENSMUST00000165375.3 |
||
| CDS-3UTR CCA 90 bp | AAAAACACAATAACCACGATGAGGGTAGGGGGAGCATCTACCTACAGACTGCCTGATTTCTCAGGGTGGTaGTGGCCCGCCTGGGCCGGC | + |
|
Preference number: 4 (lower is better) Translates to: KNTITTMRVGGASTYRLPDFSGW*WPAWAG Trigger: GCCGGCCCAGGCGGGCCACCACCACCCTGAGAAATC...AGGCAGTCTGTAGGTAGATGCTCCCCCTACCCTCATCGTGGTTATTGTGTTTTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000100164.5 |
||
| CDS-3UTR CCA 90 bp | AAAAACACAATAACCACGATGAGGGTAGGGGGAGCATCTACCTACAGACTGCCTTGCGATTTCTCAGGGTaGTGGTGGCCCGCCTGGGCC | + |
|
Preference number: 4 (lower is better) Translates to: KNTITTMRVGGASTYRLPCDFSG*WWPAWA Trigger: GGCCCAGGCGGGCCACCACCACCCTGAGAAATCGCA...AGGCAGTCTGTAGGTAGATGCTCCCCCTACCCTCATCGTGGTTATTGTGTTTTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000100164.5 |
||
| CDS-3UTR GCA 90 bp | ATGCTAAGACAACACCACATGCTTAAAGGGGTCTTTAACAGCAAGGGAAAAGGGATGTCCTCTGCCCGTTaGTGCTCCGGCGGCGTGGCG | + |
|
Preference number: 4 (lower is better) Translates to: MLRQHHMLKGVFNSKGKGMSSAR*CSGGVA Trigger: CGCCACGCCGCCGGAGCAGCAACGGGCAGAGGACAT...CCCTTTTCCCTTGCTGTTAAAGACCCCTTTAAGCATGTGGTGTTGTCTTAGCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100164.5 |
||
| CDS-3UTR CCA 90 bp | ATGCTAAGACAACACCACATGCTTAAAGGGGTCTTTAACAGCAAGGGAAAAGGGGCGCGGAGGCGGTGGTaGGTACAGCTCCTGGTGGTG | + |
|
Preference number: 4 (lower is better) Translates to: MLRQHHMLKGVFNSKGKGARRRW*VQLLVV Trigger: CACCACCAGGAGCTGTACCCACCACCGCCTCCGCGC...CCCTTTTCCCTTGCTGTTAAAGACCCCTTTAAGCATGTGGTGTTGTCTTAGCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000100164.5 ENSMUST00000165375.3 |
||
| CDS-3UTR CCA 90 bp | ATGCTAAGACAACACCACATGCTTAAAGGGGTCTTTAACAGCAAGGGAAAAGGGCAGAAGTGCCGGGGGTaGCTGCCGAGAGGGTGCTGG | + |
|
Preference number: 4 (lower is better) Translates to: MLRQHHMLKGVFNSKGKGQKCRG*LPRGCW Trigger: CCAGCACCCTCTCGGCAGCCACCCCCGGCACTTCTG...CCCTTTTCCCTTGCTGTTAAAGACCCCTTTAAGCATGTGGTGTTGTCTTAGCAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000100164.5 |
||
| CDS-3UTR GCA 90 bp | ATGCTAAGACAACACCACATGCTTAAAGGGGTCTTTAACAGCAAGGGAAAAGGGCCTGGTGATGTCCTCTaGCCGTTGCTGCTCCGGCGG | + |
|
Preference number: 4 (lower is better) Translates to: MLRQHHMLKGVFNSKGKGPGDVL*PLLLRR Trigger: CCGCCGGAGCAGCAACGGGCAGAGGACATCACCAGG...CCCTTTTCCCTTGCTGTTAAAGACCCCTTTAAGCATGTGGTGTTGTCTTAGCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100164.5 |
||
| CDS-3UTR GCA 90 bp | ATGCTAAGACAACACCACATGCTTAAAGGGGTCTTTAACAGCAAGGGAAAAGGGGGCTCGCAGAGCGGCTaGGATTTCTCAGGGTGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: MLRQHHMLKGVFNSKGKGGSQSG*DFSGWW Trigger: CCACCACCCTGAGAAATCGCAGCCGCTCTGCGAGCC...CCCTTTTCCCTTGCTGTTAAAGACCCCTTTAAGCATGTGGTGTTGTCTTAGCAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000100164.5 ENSMUST00000165375.3 |
||
| CDS-3UTR CCA 90 bp | AAAAACACAATAACCACGATGAGGGTAGGGGGAGCATCTACCTACAGACTGCCTCAGGCCCCTGGAGACTaGTGCAGCTATACTGACGCT | + |
|
Preference number: 4 (lower is better) Translates to: KNTITTMRVGGASTYRLPQAPGD*CSYTDA Trigger: AGCGTCAGTATAGCTGCACCAGTCTCCAGGGGCCTG...AGGCAGTCTGTAGGTAGATGCTCCCCCTACCCTCATCGTGGTTATTGTGTTTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000100164.5 |
||
| CDS-3UTR CCA 90 bp | ATGCTAAGACAACACCACATGCTTAAAGGGGTCTTTAACAGCAAGGGAAAAGGGGGCGGCGTGGCGCTCTaGGAGTGGTCTTCAGAAGTG | + |
|
Preference number: 4 (lower is better) Translates to: MLRQHHMLKGVFNSKGKGGGVAL*EWSSEV Trigger: CACTTCTGAAGACCACTCCCAGAGCGCCACGCCGCC...CCCTTTTCCCTTGCTGTTAAAGACCCCTTTAAGCATGTGGTGTTGTCTTAGCAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000100164.5 |
||
| CDS-3UTR CCA 90 bp | AAAAACACAATAACCACGATGAGGGTAGGGGGAGCATCTACCTACAGACTGCCTGAATTGCCAGGCCCCTaGAGACTGGTGCAGCTATAC | + |
|
Preference number: 4 (lower is better) Translates to: KNTITTMRVGGASTYRLPELPGP*RLVQLY Trigger: GTATAGCTGCACCAGTCTCCAGGGGCCTGGCAATTC...AGGCAGTCTGTAGGTAGATGCTCCCCCTACCCTCATCGTGGTTATTGTGTTTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000100164.5 |
||
| CDS-3UTR GCA 90 bp | ATGCTAAGACAACACCACATGCTTAAAGGGGTCTTTAACAGCAAGGGAAAAGGGGCCCCTGGAGACTGGTaGAGCTATACTGACGCTCAG | + |
|
Preference number: 4 (lower is better) Translates to: MLRQHHMLKGVFNSKGKGAPGDW*SYTDAQ Trigger: CTGAGCGTCAGTATAGCTGCACCAGTCTCCAGGGGC...CCCTTTTCCCTTGCTGTTAAAGACCCCTTTAAGCATGTGGTGTTGTCTTAGCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000100164.5 ENSMUST00000165375.3 |
||
| CDS-3UTR GCA 90 bp | AAATTCACCCAAACCAGACCATCACACCTTGCAATATATAATTTTTGCAGCTTTTCCTCTGCCCGTTGCTaGTCCGGCGGCGTGGCGCTC | + |
|
Preference number: 4 (lower is better) Translates to: KFTQTRPSHLAIYNFCSFSSARC*SGGVAL Trigger: GAGCGCCACGCCGCCGGAGCAGCAACGGGCAGAGGA...AAAGCTGCAAAAATTATATATTGCAAGGTGTGATGGTCTGGTTTGGGTGAATTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100164.5 |
||
| CDS-3UTR CCA 90 bp | AAATTCACCCAAACCAGACCATCACACCTTGCAATATATAATTTTTGCAGCTTTTGGTCAGGGGCTGGCTaGCTGCAGGCTGGCGGGGCT | + |
|
Preference number: 4 (lower is better) Translates to: KFTQTRPSHLAIYNFCSFWSGAG*LQAGGA Trigger: AGCCCCGCCAGCCTGCAGCCAGCCAGCCCCTGACCA...AAAGCTGCAAAAATTATATATTGCAAGGTGTGATGGTCTGGTTTGGGTGAATTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000100164.5 ENSMUST00000165375.3 |
||
| CDS-3UTR CCA 90 bp | ATGCTAAGACAACACCACATGCTTAAAGGGGTCTTTAACAGCAAGGGAAAAGGGGGAATCCCGATTCCCTaGTCCGGCCGTAATATTCCG | + |
|
Preference number: 4 (lower is better) Translates to: MLRQHHMLKGVFNSKGKGGIPIP*SGRNIP Trigger: CGGAATATTACGGCCGGACCAGGGAATCGGGATTCC...CCCTTTTCCCTTGCTGTTAAAGACCCCTTTAAGCATGTGGTGTTGTCTTAGCAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000100164.5 ENSMUST00000165375.3 |
||
| CDS-3UTR CCA 90 bp | AAATTCACCCAAACCAGACCATCACACCTTGCAATATATAATTTTTGCAGCTTTAGGGCGCGGAGGCGGTaGTGGGTACAGCTCCTGGTG | + |
|
Preference number: 4 (lower is better) Translates to: KFTQTRPSHLAIYNFCSFRARRR*WVQLLV Trigger: CACCAGGAGCTGTACCCACCACCGCCTCCGCGCCCT...AAAGCTGCAAAAATTATATATTGCAAGGTGTGATGGTCTGGTTTGGGTGAATTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000100164.5 ENSMUST00000165375.3 |
||
| CDS-3UTR CCA 90 bp | AAATTCACCCAAACCAGACCATCACACCTTGCAATATATAATTTTTGCAGCTTTGATTTCTCAGGGTGGTaGTGGCCCGCCTGGGCCGGC | + |
|
Preference number: 4 (lower is better) Translates to: KFTQTRPSHLAIYNFCSFDFSGW*WPAWAG Trigger: GCCGGCCCAGGCGGGCCACCACCACCCTGAGAAATC...AAAGCTGCAAAAATTATATATTGCAAGGTGTGATGGTCTGGTTTGGGTGAATTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000100164.5 ENSMUST00000165375.3 |
||
| CDS-3UTR CCA 90 bp | AAATTCACCCAAACCAGACCATCACACCTTGCAATATATAATTTTTGCAGCTTTGCTGCTCCGGCGGCGTaGCGCTCTGGGAGTGGTCTT | + |
|
Preference number: 4 (lower is better) Translates to: KFTQTRPSHLAIYNFCSFAAPAA*RSGSGL Trigger: AAGACCACTCCCAGAGCGCCACGCCGCCGGAGCAGC...AAAGCTGCAAAAATTATATATTGCAAGGTGTGATGGTCTGGTTTGGGTGAATTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100164.5 |
||
| CDS-3UTR GCA 90 bp | AAATTCACCCAAACCAGACCATCACACCTTGCAATATATAATTTTTGCAGCTTTCGTGGGCTCGCGAATTaGCAGGCCCCTGGAGACTGG | + |
|
Preference number: 4 (lower is better) Translates to: KFTQTRPSHLAIYNFCSFRGLAN*QAPGDW Trigger: CCAGTCTCCAGGGGCCTGGCAATTCGCGAGCCCACG...AAAGCTGCAAAAATTATATATTGCAAGGTGTGATGGTCTGGTTTGGGTGAATTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000100164.5 ENSMUST00000165375.3 |
||
| CDS-3UTR CCA 90 bp | AAAAACACAATAACCACGATGAGGGTAGGGGGAGCATCTACCTACAGACTGCCTGTGTTGGGGAGTCGGTaGTCCTTCTTCCATTTCATA | + |
|
Preference number: 4 (lower is better) Translates to: KNTITTMRVGGASTYRLPVLGSR*SFFHFI Trigger: TATGAAATGGAAGAAGGACCACCGACTCCCCAACAC...AGGCAGTCTGTAGGTAGATGCTCCCCCTACCCTCATCGTGGTTATTGTGTTTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000100164.5 |
||
| CDS-3UTR CCA 90 bp | AAATTCACCCAAACCAGACCATCACACCTTGCAATATATAATTTTTGCAGCTTTGTGGCGCTCTGGGAGTaGTCTTCAGAAGTGCCGGGG | + |
|
Preference number: 4 (lower is better) Translates to: KFTQTRPSHLAIYNFCSFVALWE*SSEVPG Trigger: CCCCGGCACTTCTGAAGACCACTCCCAGAGCGCCAC...AAAGCTGCAAAAATTATATATTGCAAGGTGTGATGGTCTGGTTTGGGTGAATTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100164.5 |
||
| CDS-3UTR GCA 90 bp | AAATTCACCCAAACCAGACCATCACACCTTGCAATATATAATTTTTGCAGCTTTAGTGGTCTTCAGAAGTaGCGGGGGTGGCTGCCGAGA | + |
|
Preference number: 4 (lower is better) Translates to: KFTQTRPSHLAIYNFCSFSGLQK*RGWLPR Trigger: TCTCGGCAGCCACCCCCGGCACTTCTGAAGACCACT...AAAGCTGCAAAAATTATATATTGCAAGGTGTGATGGTCTGGTTTGGGTGAATTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000100164.5 |
||
| CDS-3UTR GCA 90 bp | AAATTCACCCAAACCAGACCATCACACCTTGCAATATATAATTTTTGCAGCTTTGCCCCTGGAGACTGGTaGAGCTATACTGACGCTCAG | + |
|
Preference number: 4 (lower is better) Translates to: KFTQTRPSHLAIYNFCSFAPGDW*SYTDAQ Trigger: CTGAGCGTCAGTATAGCTGCACCAGTCTCCAGGGGC...AAAGCTGCAAAAATTATATATTGCAAGGTGTGATGGTCTGGTTTGGGTGAATTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000100164.5 ENSMUST00000165375.3 |
||
| CDS-3UTR CCA 90 bp | AAATTCACCCAAACCAGACCATCACACCTTGCAATATATAATTTTTGCAGCTTTGAGAGGCACAGCGAGTaGGCGATCTCGATCCTTCTC | + |
|
Preference number: 4 (lower is better) Translates to: KFTQTRPSHLAIYNFCSFERHSE*AISILL Trigger: GAGAAGGATCGAGATCGCCCACTCGCTGTGCCTCTC...AAAGCTGCAAAAATTATATATTGCAAGGTGTGATGGTCTGGTTTGGGTGAATTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100164.5 |
||
| CDS-3UTR TCA 90 bp | AAATTCACCCAAACCAGACCATCACACCTTGCAATATATAATTTTTGCAGCTTTTACAGCTCCTGGTGGTaGTGCTGGAATCCCGATTCC | + |
|
Preference number: 4 (lower is better) Translates to: KFTQTRPSHLAIYNFCSFYSSWW*CWNPDS Trigger: GGAATCGGGATTCCAGCATCACCACCAGGAGCTGTA...AAAGCTGCAAAAATTATATATTGCAAGGTGTGATGGTCTGGTTTGGGTGAATTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000100164.5 ENSMUST00000165375.3 |
||
| CDS-3UTR CCA 90 bp | AAATTCACCCAAACCAGACCATCACACCTTGCAATATATAATTTTTGCAGCTTTACCTCACTTTGGTGTTaGGGAGTCGGTGGTCCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: KFTQTRPSHLAIYNFCSFTSLWC*GVGGPS Trigger: AGAAGGACCACCGACTCCCCAACACCAAAGTGAGGT...AAAGCTGCAAAAATTATATATTGCAAGGTGTGATGGTCTGGTTTGGGTGAATTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100164.5 |
||
| CDS-3UTR CCA 90 bp | AAATTCACCCAAACCAGACCATCACACCTTGCAATATATAATTTTTGCAGCTTTCGAATATTCTTCGCATaGAGGAAATTTCGGATCGAT | + |
|
Preference number: 4 (lower is better) Translates to: KFTQTRPSHLAIYNFCSFRIFFA*RKFRID Trigger: ATCGATCCGAAATTTCCTCCATGCGAAGAATATTCG...AAAGCTGCAAAAATTATATATTGCAAGGTGTGATGGTCTGGTTTGGGTGAATTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000100164.5 ENSMUST00000165375.3 |
||
| CDS CCA 90 bp | AGAGGCGCCGGCTCGCAGAGCGGCTGCGATTTCTCAGGGTGGTGGTaGCCCGCCTGGGCCGGCCCGTGGGCTCGCGAATTGCCAGGCCCC | + |
|
Preference number: 5 (lower is better) Translates to: RGAGSQSGCDFSGWW*PAWAGPWARELPGP Trigger: GGGGCCTGGCAATTCGCGAGCCCACGGGCCGGCCCAGGCGGGCCACCACCACCCTGAGAAATCGCAGCCGCTCTGCGAGCCGGCGCCTCT 74% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100164.5 ENSMUST00000165375.3 |
||
| CDS CCA 90 bp | GAGAGAGGCGCCGGCTCGCAGAGCGGCTGCGATTTCTCAGGGTGGTaGTGGCCCGCCTGGGCCGGCCCGTGGGCTCGCGAATTGCCAGGC | + |
|
Preference number: 5 (lower is better) Translates to: ERGAGSQSGCDFSGW*WPAWAGPWARELPG Trigger: GCCTGGCAATTCGCGAGCCCACGGGCCGGCCCAGGCGGGCCACCACCACCCTGAGAAATCGCAGCCGCTCTGCGAGCCGGCGCCTCTCTC 73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100164.5 ENSMUST00000165375.3 |
||
| CDS CCA 90 bp | GGCTCGCAGAGCGGCTGCGATTTCTCAGGGTGGTGGTGGCCCGCCTaGGCCGGCCCGTGGGCTCGCGAATTGCCAGGCCCCTGGAGACTG | + |
|
Preference number: 5 (lower is better) Translates to: GSQSGCDFSGWWWPA*AGPWARELPGPWRL Trigger: CAGTCTCCAGGGGCCTGGCAATTCGCGAGCCCACGGGCCGGCCCAGGCGGGCCACCACCACCCTGAGAAATCGCAGCCGCTCTGCGAGCC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100164.5 ENSMUST00000165375.3 |
||
| CDS CCA 90 bp | CCTGAGAGAGGCGCCGGCTCGCAGAGCGGCTGCGATTTCTCAGGGTaGTGGTGGCCCGCCTGGGCCGGCCCGTGGGCTCGCGAATTGCCA | + |
|
Preference number: 5 (lower is better) Translates to: PERGAGSQSGCDFSG*WWPAWAGPWARELP Trigger: TGGCAATTCGCGAGCCCACGGGCCGGCCCAGGCGGGCCACCACCACCCTGAGAAATCGCAGCCGCTCTGCGAGCCGGCGCCTCTCTCAGG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100164.5 ENSMUST00000165375.3 |
||
| CDS GCA 90 bp | CAGGGTGGTGGTGGCCCGCCTGGGCCGGCCCGTGGGCTCGCGAATTaGCAGGCCCCTGGAGACTGGTGCAGCTATACTGACGCTCAGGGT | + |
|
Preference number: 5 (lower is better) Translates to: QGGGGPPGPARGLAN*QAPGDWCSYTDAQG Trigger: ACCCTGAGCGTCAGTATAGCTGCACCAGTCTCCAGGGGCCTGGCAATTCGCGAGCCCACGGGCCGGCCCAGGCGGGCCACCACCACCCTG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100164.5 ENSMUST00000165375.3 |
||
| CDS CCA 90 bp | GGCTGCGATTTCTCAGGGTGGTGGTGGCCCGCCTGGGCCGGCCCGTaGGCTCGCGAATTGCCAGGCCCCTGGAGACTGGTGCAGCTATAC | + |
|
Preference number: 5 (lower is better) Translates to: GCDFSGWWWPAWAGP*ARELPGPWRLVQLY Trigger: GTATAGCTGCACCAGTCTCCAGGGGCCTGGCAATTCGCGAGCCCACGGGCCGGCCCAGGCGGGCCACCACCACCCTGAGAAATCGCAGCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100164.5 ENSMUST00000165375.3 |
||
| CDS CCA 90 bp | GCAGCTATACTGACGCTCAGGGTAGCTAGGGCGCGGAGGCGGTGGTaGGTACAGCTCCTGGTGGTGATGCTGGAATCCCGATTCCCTGGT | + |
|
Preference number: 5 (lower is better) Translates to: AAILTLRVARARRRW*VQLLVVMLESRFPG Trigger: ACCAGGGAATCGGGATTCCAGCATCACCACCAGGAGCTGTACCCACCACCGCCTCCGCGCCCTAGCTACCCTGAGCGTCAGTATAGCTGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100164.5 ENSMUST00000165375.3 |
||
| CDS CCA 90 bp | GGTGCAGCTATACTGACGCTCAGGGTAGCTAGGGCGCGGAGGCGGTaGTGGGTACAGCTCCTGGTGGTGATGCTGGAATCCCGATTCCCT | + |
|
Preference number: 5 (lower is better) Translates to: GAAILTLRVARARRR*WVQLLVVMLESRFP Trigger: AGGGAATCGGGATTCCAGCATCACCACCAGGAGCTGTACCCACCACCGCCTCCGCGCCCTAGCTACCCTGAGCGTCAGTATAGCTGCACC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100164.5 ENSMUST00000165375.3 |
||
| CDS-3UTR CAA 90 bp | TGCCCGTTGCTGCTCCGGCGGCGTGGCGCTCTGGGAGTGGTCTTCAGAAGTGCCAGGGATGTAGCTATTTaGCGAATATTCTTCGCATGG | + |
|
Preference number: 5 (lower is better) Translates to: CPLLLRRRGALGVVFRSARDVAI*RIFFAW Trigger: CCATGCGAAGAATATTCGCAAAATAGCTACATCCCT...GGCACTTCTGAAGACCACTCCCAGAGCGCCACGCCGCCGGAGCAGCAACGGGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165375.3 |
||
| CDS CCA 90 bp | GTGGTGGGTACAGCTCCTGGTGGTGATGCTGGAATCCCGATTCCCTaGTCCGGCCGTAATATTCCGGACTGTGTTCAGGGATGTAGCTAT | + |
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Preference number: 5 (lower is better) Translates to: VVGTAPGGDAGIPIP*SGRNIPDCVQGCSY Trigger: ATAGCTACATCCCTGAACACAGTCCGGAATATTACGGCCGGACCAGGGAATCGGGATTCCAGCATCACCACCAGGAGCTGTACCCACCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100164.5 ENSMUST00000165375.3 |
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| CDS-3UTR CAA 90 bp | AAAAACACAATAACCACGATGAGGGTAGGGGGAGCATCTACCTACAGACTGCCTGGCGCTGACCTCACTTaGGTGTTGGGGAGTCGGTGG | + |
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Preference number: 5 (lower is better) Translates to: KNTITTMRVGGASTYRLPGADLT*VLGSRW Trigger: CCACCGACTCCCCAACACCAAAGTGAGGTCAGCGCC...AGGCAGTCTGTAGGTAGATGCTCCCCCTACCCTCATCGTGGTTATTGTGTTTTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000100164.5 |
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| CDS-3UTR CAA 90 bp | ATGCTAAGACAACACCACATGCTTAAAGGGGTCTTTAACAGCAAGGGAAAAGGGGACCTCACTTTGGTGTaGGGGAGTCGGTGGTCCTTC | + |
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Preference number: 5 (lower is better) Translates to: MLRQHHMLKGVFNSKGKGDLTLV*GSRWSF Trigger: GAAGGACCACCGACTCCCCAACACCAAAGTGAGGTC...CCCTTTTCCCTTGCTGTTAAAGACCCCTTTAAGCATGTGGTGTTGTCTTAGCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000100164.5 |
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| CDS-3UTR CAA 90 bp | AAATTCACCCAAACCAGACCATCACACCTTGCAATATATAATTTTTGCAGCTTTGATGTCCTCTGCCCGTaGCTGCTCCGGCGGCGTGGC | + |
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Preference number: 5 (lower is better) Translates to: KFTQTRPSHLAIYNFCSFDVLCP*LLRRRG Trigger: GCCACGCCGCCGGAGCAGCAACGGGCAGAGGACATC...AAAGCTGCAAAAATTATATATTGCAAGGTGTGATGGTCTGGTTTGGGTGAATTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100164.5 |
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| CDS-3UTR CAA 90 bp | AAATTCACCCAAACCAGACCATCACACCTTGCAATATATAATTTTTGCAGCTTTCCGTGGGCTCGCGAATaGCCAGGCCCCTGGAGACTG | + |
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Preference number: 5 (lower is better) Translates to: KFTQTRPSHLAIYNFCSFPWARE*PGPWRL Trigger: CAGTCTCCAGGGGCCTGGCAATTCGCGAGCCCACGG...AAAGCTGCAAAAATTATATATTGCAAGGTGTGATGGTCTGGTTTGGGTGAATTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000100164.5 ENSMUST00000165375.3 |
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| CDS-3UTR CAA 90 bp | ATGCTAAGACAACACCACATGCTTAAAGGGGTCTTTAACAGCAAGGGAAAAGGGAGGGATGTAGCTATTTaGCGAATATTCTTCGCATGG | + |
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Preference number: 5 (lower is better) Translates to: MLRQHHMLKGVFNSKGKGRDVAI*RIFFAW Trigger: CCATGCGAAGAATATTCGCAAAATAGCTACATCCCT...CCCTTTTCCCTTGCTGTTAAAGACCCCTTTAAGCATGTGGTGTTGTCTTAGCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000100164.5 ENSMUST00000165375.3 |
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| CDS CCA 72 bp | GGCGCCGGCTCGCAGAGCGGCTGCGATTTCTCAGGGTaGTGGTGGCCCGCCTGGGCCGGCCCGTGGGCTCGC | + |
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Preference number: 6 (lower is better) Translates to: GAGSQSGCDFSG*WWPAWAGPWAR Trigger: GCGAGCCCACGGGCCGGCCCAGGCGGGCCACCACCACCCTGAGAAATCGCAGCCGCTCTGCGAGCCGGCGCC 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100164.5 ENSMUST00000165375.3 |
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| CDS CCA 72 bp | GCCGGCTCGCAGAGCGGCTGCGATTTCTCAGGGTGGTaGTGGCCCGCCTGGGCCGGCCCGTGGGCTCGCGAA | + |
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Preference number: 6 (lower is better) Translates to: AGSQSGCDFSGW*WPAWAGPWARE Trigger: TTCGCGAGCCCACGGGCCGGCCCAGGCGGGCCACCACCACCCTGAGAAATCGCAGCCGCTCTGCGAGCCGGC 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100164.5 ENSMUST00000165375.3 |
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| CDS CCA 72 bp | AGCGGCTGCGATTTCTCAGGGTGGTGGTGGCCCGCCTaGGCCGGCCCGTGGGCTCGCGAATTGCCAGGCCCC | + |
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Preference number: 6 (lower is better) Translates to: SGCDFSGWWWPA*AGPWARELPGP Trigger: GGGGCCTGGCAATTCGCGAGCCCACGGGCCGGCCCAGGCGGGCCACCACCACCCTGAGAAATCGCAGCCGCT 74% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100164.5 ENSMUST00000165375.3 |
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| CDS GCA 72 bp | GAGGTGCCTGAGAGAGGCGCCGGCTCGCAGAGCGGCTaGGATTTCTCAGGGTGGTGGTGGCCCGCCTGGGCC | + |
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Preference number: 6 (lower is better) Translates to: EVPERGAGSQSG*DFSGWWWPAWA Trigger: GGCCCAGGCGGGCCACCACCACCCTGAGAAATCGCAGCCGCTCTGCGAGCCGGCGCCTCTCTCAGGCACCTC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100164.5 ENSMUST00000165375.3 |
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| CDS CCA 72 bp | TTCTCAGGGTGGTGGTGGCCCGCCTGGGCCGGCCCGTaGGCTCGCGAATTGCCAGGCCCCTGGAGACTGGTG | + |
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Preference number: 6 (lower is better) Translates to: FSGWWWPAWAGP*ARELPGPWRLV Trigger: CACCAGTCTCCAGGGGCCTGGCAATTCGCGAGCCCACGGGCCGGCCCAGGCGGGCCACCACCACCCTGAGAA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100164.5 ENSMUST00000165375.3 |
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| CDS CCA 72 bp | GGCTCGCAGAGCGGCTGCGATTTCTCAGGGTGGTGGTaGCCCGCCTGGGCCGGCCCGTGGGCTCGCGAATTG | + |
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Preference number: 6 (lower is better) Translates to: GSQSGCDFSGWW*PAWAGPWAREL Trigger: CAATTCGCGAGCCCACGGGCCGGCCCAGGCGGGCCACCACCACCCTGAGAAATCGCAGCCGCTCTGCGAGCC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100164.5 ENSMUST00000165375.3 |
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| CDS GCA 72 bp | GGTGGCCCGCCTGGGCCGGCCCGTGGGCTCGCGAATTaGCAGGCCCCTGGAGACTGGTGCAGCTATACTGAC | + |
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Preference number: 6 (lower is better) Translates to: GGPPGPARGLAN*QAPGDWCSYTD Trigger: GTCAGTATAGCTGCACCAGTCTCCAGGGGCCTGGCAATTCGCGAGCCCACGGGCCGGCCCAGGCGGGCCACC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100164.5 ENSMUST00000165375.3 |
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| CDS CCA 72 bp | CTGACGCTCAGGGTAGCTAGGGCGCGGAGGCGGTGGTaGGTACAGCTCCTGGTGGTGATGCTGGAATCCCGA | + |
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Preference number: 6 (lower is better) Translates to: LTLRVARARRRW*VQLLVVMLESR Trigger: TCGGGATTCCAGCATCACCACCAGGAGCTGTACCCACCACCGCCTCCGCGCCCTAGCTACCCTGAGCGTCAG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100164.5 ENSMUST00000165375.3 |
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| CDS CCA 72 bp | ACAGCTCCTGGTGGTGATGCTGGAATCCCGATTCCCTaGTCCGGCCGTAATATTCCGGACTGTGTTCAGGGA | + |
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Preference number: 6 (lower is better) Translates to: TAPGGDAGIPIP*SGRNIPDCVQG Trigger: TCCCTGAACACAGTCCGGAATATTACGGCCGGACCAGGGAATCGGGATTCCAGCATCACCACCAGGAGCTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100164.5 ENSMUST00000165375.3 |
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| CDS CAA 72 bp | GTAATATTCCGGACTGTGTTCAGGGATGTAGCTATTTaGCGAATATTCTTCGCATGGAGGAAATTTCGGATC | + |
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Preference number: 6 (lower is better) Translates to: VIFRTVFRDVAI*RIFFAWRKFRI Trigger: GATCCGAAATTTCCTCCATGCGAAGAATATTCGCAAAATAGCTACATCCCTGAACACAGTCCGGAATATTAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100164.5 ENSMUST00000165375.3 |
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| CDS CCA 72 bp | TTCAGGGATGTAGCTATTTTGCGAATATTCTTCGCATaGAGGAAATTTCGGATCGATGTAGTTAGAGTCCAT | + |
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Preference number: 6 (lower is better) Translates to: FRDVAILRIFFA*RKFRIDVVRVH Trigger: ATGGACTCTAACTACATCGATCCGAAATTTCCTCCATGCGAAGAATATTCGCAAAATAGCTACATCCCTGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100164.5 ENSMUST00000165375.3 |
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