Pregenerated sensors for HOXC13 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001655Ensembl transcript IDs: ENSMUST00000001700.7
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCCTTGGATTTCCTTAGGACTAAGAGTGCAAAGCAGAGGAGGCAGTaGGGTCAAAGGCACCTCCCGGGAATCATTTCTGGGTTAGGGTGT | + |
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Preference number: 1 (lower is better) Translates to: SLDFLRTKSAKQRRQ*GQRHLPGIISGLGC Trigger: ACACCCTAACCCAGAAATGATTCCCGGGAGGTGCCTTTGACCCCACTGCCTCCTCTGCTTTGCACTCTTAGTCCTAAGGAAATCCAAGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| 3UTR GCA 90 bp | AGCTGTTCTTCTTTCTCGGTAAGATTAAATAGTGGTCTGCGCCGGTaGAGCGTCCTTCGGGTGGATTCCGTTATGGTACAAAGCTGTGAC | + |
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Preference number: 1 (lower is better) Translates to: SCSSFSVRLNSGLRR*SVLRVDSVMVQSCD Trigger: GTCACAGCTTTGTACCATAACGGAATCCACCCGAAGGACGCTGCACCGGCGCAGACCACTATTTAATCTTACCGAGAAAGAAGAACAGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| 3UTR GCA 90 bp | GTGAAAAATGAAAGTGTGTGGTCTCTCCTCTCCACTATCTGCTACTaGTTATGTAGAGATAAGATTGAAGATCTTCTGAGGGACCCACCC | + |
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Preference number: 1 (lower is better) Translates to: VKNESVWSLLSTICY*LCRDKIEDLLRDPP Trigger: GGGTGGGTCCCTCAGAAGATCTTCAATCTTATCTCTACATAAGCAGTAGCAGATAGTGGAGAGGAGAGACCACACACTTTCATTTTTCAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| 3UTR TCA 90 bp | CCACTATCTGCTACTGCTTATGTAGAGATAAGATTGAAGATCTTCTaGGGGACCCACCCTCTATCTCCTTTAAAGAAGTTTATAAAAAGT | + |
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Preference number: 1 (lower is better) Translates to: PLSATAYVEIRLKIF*GTHPLSPLKKFIKS Trigger: ACTTTTTATAAACTTCTTTAAAGGAGATAGAGGGTGGGTCCCTCAGAAGATCTTCAATCTTATCTCTACATAAGCAGTAGCAGATAGTGG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| 3UTR-3UTR CCA 90 bp | TCTAAGCCTGGCCTAGTTCCCAACCTCACCTTGAGAGAGAAAGAGACAGAAGCCAAGCAGAGGAGGCAGTaGGGTCAAAGGCACCTCCCG | + |
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Preference number: 2 (lower is better) Translates to: SKPGLVPNLTLREKETEAKQRRQ*GQRHLP Trigger: CGGGAGGTGCCTTTGACCCCACTGCCTCCTCTGCTT...GGCTTCTGTCTCTTTCTCTCTCAAGGTGAGGTTGGGAACTAGGCCAGGCTTAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| 3UTR-3UTR CCA 90 bp | AAAAATGAAAGTGTGTGGTCTCTCCTCTCCACTATCTGCTACTGCTTATGTAGAGCAGCGTCCTTCGGGTaGATTCCGTTATGGTACAAA | + |
|
Preference number: 2 (lower is better) Translates to: KNESVWSLLSTICYCLCRAASFG*IPLWYK Trigger: TTTGTACCATAACGGAATCCACCCGAAGGACGCTGC...TCTACATAAGCAGTAGCAGATAGTGGAGAGGAGAGACCACACACTTTCATTTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| 3UTR-3UTR CCA 90 bp | AAAAATGAAAGTGTGTGGTCTCTCCTCTCCACTATCTGCTACTGCTTATGTAGATGTTTTTGTCCTCCTTaGATTTCCTTAGGACTAAGA | + |
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Preference number: 2 (lower is better) Translates to: KNESVWSLLSTICYCLCRCFCPP*ISLGLR Trigger: TCTTAGTCCTAAGGAAATCCAAGGAGGACAAAAACA...TCTACATAAGCAGTAGCAGATAGTGGAGAGGAGAGACCACACACTTTCATTTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| 3UTR CCA 72 bp | GTCACAAAGGCCAGGGGTTTAGAGACAGTCTTCCTCTaGTACCCCATTCGAACCCACCTCTACAGCTGCGGA | + |
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Preference number: 3 (lower is better) Translates to: VTKARGLETVFL*YPIRTHLYSCG Trigger: TCCGCAGCTGTAGAGGTGGGTTCGAATGGGGTACCAGAGGAAGACTGTCTCTAAACCCCTGGCCTTTGTGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| 3UTR CCA 72 bp | TTTGGAATTCCCCAGTCCTGCTTTGGTAGGAATGACTaGGCTCTCCAGGCCACTCGGCTTTCTAGTGGGACA | + |
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Preference number: 3 (lower is better) Translates to: FGIPQSCFGRND*ALQATRLSSGT Trigger: TGTCCCACTAGAAAGCCGAGTGGCCTGGAGAGCCCAGTCATTCCTACCAAAGCAGGACTGGGGAATTCCAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| 3UTR CCA 72 bp | TTCCTTAGGACTAAGAGTGCAAAGCAGAGGAGGCAGTaGGGTCAAAGGCACCTCCCGGGAATCATTTCTGGG | + |
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Preference number: 3 (lower is better) Translates to: FLRTKSAKQRRQ*GQRHLPGIISG Trigger: CCCAGAAATGATTCCCGGGAGGTGCCTTTGACCCCACTGCCTCCTCTGCTTTGCACTCTTAGTCCTAAGGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| 3UTR-3UTR CAA 90 bp | AGAAAAATCGTAACTGGGAAAACCTTGCCTACGGAGTTCAGTAATGACAGTAAAGCTGCGGATGCTGAGTaGGGTGCCATCTGGCAGGGG | + |
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Preference number: 3 (lower is better) Translates to: RKIVTGKTLPTEFSNDSKAADAE*GAIWQG Trigger: CCCCTGCCAGATGGCACCCAACTCAGCATCCGCAGC...TTTACTGTCATTACTGAACTCCGTAGGCAAGGTTTTCCCAGTTACGATTTTTCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| 3UTR GCA 72 bp | TCTTTCTCGGTAAGATTAAATAGTGGTCTGCGCCGGTaGAGCGTCCTTCGGGTGGATTCCGTTATGGTACAA | + |
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Preference number: 3 (lower is better) Translates to: SFSVRLNSGLRR*SVLRVDSVMVQ Trigger: TTGTACCATAACGGAATCCACCCGAAGGACGCTGCACCGGCGCAGACCACTATTTAATCTTACCGAGAAAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| 3UTR GCA 72 bp | GAAAGTGTGTGGTCTCTCCTCTCCACTATCTGCTACTaGTTATGTAGAGATAAGATTGAAGATCTTCTGAGG | + |
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Preference number: 3 (lower is better) Translates to: ESVWSLLSTICY*LCRDKIEDLLR Trigger: CCTCAGAAGATCTTCAATCTTATCTCTACATAAGCAGTAGCAGATAGTGGAGAGGAGAGACCACACACTTTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| 3UTR TCA 72 bp | AGAAAAGAAAATCTGATCTACAAGAACGGTTCCGTTTaGATTACATTACACTGCCAGGCCCTAAGGATTAGC | + |
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Preference number: 3 (lower is better) Translates to: RKENLIYKNGSV*ITLHCQALRIS Trigger: GCTAATCCTTAGGGCCTGGCAGTGTAATGTAATTCAAACGGAACCGTTCTTGTAGATCAGATTTTCTTTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| 3UTR TCA 72 bp | GCTACTGCTTATGTAGAGATAAGATTGAAGATCTTCTaGGGGACCCACCCTCTATCTCCTTTAAAGAAGTTT | + |
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Preference number: 3 (lower is better) Translates to: ATAYVEIRLKIF*GTHPLSPLKKF Trigger: AAACTTCTTTAAAGGAGATAGAGGGTGGGTCCCTCAGAAGATCTTCAATCTTATCTCTACATAAGCAGTAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| 3UTR GCA 72 bp | AAAAATGAAAGTGTGTGGTCTCTCCTCTCCACTATCTaGTACTGCTTATGTAGAGATAAGATTGAAGATCTT | + |
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Preference number: 3 (lower is better) Translates to: KNESVWSLLSTI*YCLCRDKIEDL Trigger: AAGATCTTCAATCTTATCTCTACATAAGCAGTAGCAGATAGTGGAGAGGAGAGACCACACACTTTCATTTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS-3UTR CCA 90 bp | ACAAAGGCCAGGGGTTTAGAGACAGTCTTCCTCTGGTACCCCATTCGAACCCACGGTCGCGGCAGTGGCTaGCCGGGCAGCTACCGCCCA | + |
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Preference number: 4 (lower is better) Translates to: TKARGLETVFLWYPIRTHGRGSG*PGSYRP Trigger: TGGGCGGTAGCTGCCCGGCCAGCCACTGCCGCGACC...GTGGGTTCGAATGGGGTACCAGAGGAAGACTGTCTCTAAACCCCTGGCCTTTGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| 3UTR CAA 72 bp | CCATTCGAACCCACCTCTACAGCTGCGGATGCTGAGTaGGGTGCCATCTGGCAGGGGGCGGTGAGATTAGGG | + |
|
Preference number: 4 (lower is better) Translates to: PFEPTSTAADAE*GAIWQGAVRLG Trigger: CCCTAATCTCACCGCCCCCTGCCAGATGGCACCCAACTCAGCATCCGCAGCTGTAGAGGTGGGTTCGAATGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS-3UTR GCA 90 bp | TTAGAGACAGTCTTCCTCTGGTACCCCATTCGAACCCACCTCTACAGCTGCGGATCCGGCCAGCGCGGGTaGAGGAGCAGCGAAGTCGTC | + |
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Preference number: 4 (lower is better) Translates to: LETVFLWYPIRTHLYSCGSGQRG*RSSEVV Trigger: GACGACTTCGCTGCTCCTGCACCCGCGCTGGCCGGA...TCCGCAGCTGTAGAGGTGGGTTCGAATGGGGTACCAGAGGAAGACTGTCTCTAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS-3UTR GCA 90 bp | TCCGTTATGGTACAAAGCTGTGACATAAATAGTCGGGACGGGCGGGGAGGGCGGCAGGTAGCCGGGCATTaGCTGGTAGGAGCTGGCGAA | + |
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Preference number: 4 (lower is better) Translates to: SVMVQSCDINSRDGRGGRQVAGH*LVGAGE Trigger: TTCGCCAGCTCCTACCAGGCAATGCCCGGCTACCTG...CCGCCCTCCCCGCCCGTCCCGACTATTTATGTCACAGCTTTGTACCATAACGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS-3UTR CCA 90 bp | ACAAAGGCCAGGGGTTTAGAGACAGTCTTCCTCTGGTACCCCATTCGAACCCACGCTCCGAGAGGTTCGTaGTGGCTGAGATGCGCCGGC | + |
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Preference number: 4 (lower is better) Translates to: TKARGLETVFLWYPIRTHAPRGS*WLRCAG Trigger: GCCGGCGCATCTCAGCCACCACGAACCTCTCGGAGC...GTGGGTTCGAATGGGGTACCAGAGGAAGACTGTCTCTAAACCCCTGGCCTTTGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS-3UTR CCA 90 bp | ACTCGGCTTTCTAGTGGGACAAGTCACAAAGGCCAGGGGTTTAGAGACAGTCTTCGCGCCCGACGGCTCTaGGTACTTGTCCCCCGGATG | + |
|
Preference number: 4 (lower is better) Translates to: TRLSSGTSHKGQGFRDSLRARRL*VLVPRM Trigger: CATCCGGGGGACAAGTACCCAGAGCCGTCGGGCGCG...AAGACTGTCTCTAAACCCCTGGCCTTTGTGACTTGTCCCACTAGAAAGCCGAGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS-3UTR TCA 90 bp | AGGGTAAGGCAGAGCTGTTCTTCTTTCTCGGTAAGATTAAATAGTGGTCTGCGCGCTCCGGGTGCCCGCTaGTCCCAGGCACCACCGACA | + |
|
Preference number: 4 (lower is better) Translates to: RVRQSCSSFSVRLNSGLRAPGAR*SQAPPT Trigger: TGTCGGTGGTGCCTGGGATCAGCGGGCACCCGGAGC...GCGCAGACCACTATTTAATCTTACCGAGAAAGAAGAACAGCTCTGCCTTACCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS-3UTR GCA 90 bp | AGGAAGAGGCAAGAACTGAGTAATTTGGAATTCCCCAGTCCTGCTTTGGTAGGACCATGCTCGGGGCTTTaGCGGGGCTCGCTCCGCTGC | + |
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Preference number: 4 (lower is better) Translates to: RKRQELSNLEFPSPALVGPCSGL*RGSLRC Trigger: GCAGCGGAGCGAGCCCCGGCAAAGCCCCGAGCATGG...TCCTACCAAAGCAGGACTGGGGAATTCCAAATTACTCAGTTCTTGCCTCTTCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS-3UTR GCA 90 bp | GGGTTTAGAGACAGTCTTCCTCTGGTACCCCATTCGAACCCACCTCTACAGCTGTCGTGGTGGCTGAGATaGGCCGGCGCTTCTCTTTGG | + |
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Preference number: 4 (lower is better) Translates to: GFRDSLPLVPHSNPPLQLSWWLR*AGASLW Trigger: CCAAAGAGAAGCGCCGGCGCATCTCAGCCACCACGA...CAGCTGTAGAGGTGGGTTCGAATGGGGTACCAGAGGAAGACTGTCTCTAAACCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS-3UTR CCA 90 bp | AGGAAGAGGCAAGAACTGAGTAATTTGGAATTCCCCAGTCCTGCTTTGGTAGGAAGCAGGTCGCGGCAGTaGCTGGCCGGGCAGCTACCG | + |
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Preference number: 4 (lower is better) Translates to: RKRQELSNLEFPSPALVGSRSRQ*LAGQLP Trigger: CGGTAGCTGCCCGGCCAGCCACTGCCGCGACCTGCT...TCCTACCAAAGCAGGACTGGGGAATTCCAAATTACTCAGTTCTTGCCTCTTCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS-3UTR CCA 90 bp | ACTCGGCTTTCTAGTGGGACAAGTCACAAAGGCCAGGGGTTTAGAGACAGTCTTAACCATAGCCCAGGGTaGCGCTGGACGAGGTGGGGG | + |
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Preference number: 4 (lower is better) Translates to: TRLSSGTSHKGQGFRDSLNHSPG*RWTRWG Trigger: CCCCCACCTCGTCCAGCGCCACCCTGGGCTATGGTT...AAGACTGTCTCTAAACCCCTGGCCTTTGTGACTTGTCCCACTAGAAAGCCGAGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS-3UTR TCA 90 bp | AAAAATGAAAGTGTGTGGTCTCTCCTCTCCACTATCTGCTACTGCTTATGTAGAGGGATGAGCGCGTCGTaGCGCGGCTCCGGGTGCCCG | + |
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Preference number: 4 (lower is better) Translates to: KNESVWSLLSTICYCLCRGMSAS*RGSGCP Trigger: CGGGCACCCGGAGCCGCGTCACGACGCGCTCATCCC...TCTACATAAGCAGTAGCAGATAGTGGAGAGGAGAGACCACACACTTTCATTTTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS-3UTR GCA 90 bp | GGGTTTAGAGACAGTCTTCCTCTGGTACCCCATTCGAACCCACCTCTACAGCTGGCGCAAGGCTTCTGCTaGAGGTTCACGTTGTGCGAC | + |
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Preference number: 4 (lower is better) Translates to: GFRDSLPLVPHSNPPLQLAQGFC*RFTLCD Trigger: GTCGCACAACGTGAACCTGCAGCAGAAGCCTTGCGC...CAGCTGTAGAGGTGGGTTCGAATGGGGTACCAGAGGAAGACTGTCTCTAAACCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS-3UTR GCA 90 bp | CACAAGCTGAGGCACAGGAAGAGGCAAGAACTGAGTAATTTGGAATTCCCCAGTCAGAGGTGGGCGGACTaGGACTGCTCCTTGGAGCAG | + |
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Preference number: 4 (lower is better) Translates to: HKLRHRKRQELSNLEFPSQRWAD*DCSLEQ Trigger: CTGCTCCAAGGAGCAGTCGCAGTCCGCCCACCTCTG...ACTGGGGAATTCCAAATTACTCAGTTCTTGCCTCTTCCTGTGCCTCAGCTTGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS-3UTR CCA 90 bp | ACAAAGGCCAGGGGTTTAGAGACAGTCTTCCTCTGGTACCCCATTCGAACCCACGACTGTCCCAGCCATTaGAAAGAGCCCAGTGCTGGT | + |
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Preference number: 4 (lower is better) Translates to: TKARGLETVFLWYPIRTHDCPSH*KEPSAG Trigger: ACCAGCACTGGGCTCTTTCCAATGGCTGGGACAGTC...GTGGGTTCGAATGGGGTACCAGAGGAAGACTGTCTCTAAACCCCTGGCCTTTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS-3UTR GCA 90 bp | AGAAAAATCGTAACTGGGAAAACCTTGCCTACGGAGTTCAGTAATGACAGTAAACGCCCAGCCCGTCCATaGTCGGGGCTTTGCCGGGGC | + |
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Preference number: 4 (lower is better) Translates to: RKIVTGKTLPTEFSNDSKRPARP*SGLCRG Trigger: GCCCCGGCAAAGCCCCGAGCATGGACGGGCTGGGCG...TTTACTGTCATTACTGAACTCCGTAGGCAAGGTTTTCCCAGTTACGATTTTTCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS-3UTR GCA 90 bp | ACTCGGCTTTCTAGTGGGACAAGTCACAAAGGCCAGGGGTTTAGAGACAGTCTTGGCAGCCGTAGTAGCTaGCCCCAAATGGGTAACCAT | + |
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Preference number: 4 (lower is better) Translates to: TRLSSGTSHKGQGFRDSLGSRSS*PQMGNH Trigger: ATGGTTACCCATTTGGGGGCAGCTACTACGGCTGCC...AAGACTGTCTCTAAACCCCTGGCCTTTGTGACTTGTCCCACTAGAAAGCCGAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS-3UTR GCA 90 bp | AGAAAAATCGTAACTGGGAAAACCTTGCCTACGGAGTTCAGTAATGACAGTAAAAGGGCACGCGCTTCTTaGGCCCGCGCCGGTAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: RKIVTGKTLPTEFSNDSKRARAS*ARAGSC Trigger: GCAGCTACCGGCGCGGGCGCAAGAAGCGCGTGCCCT...TTTACTGTCATTACTGAACTCCGTAGGCAAGGTTTTCCCAGTTACGATTTTTCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS-3UTR GCA 90 bp | ATTACATTACACTGCCAGGCCCTAAGGATTAGCATCAATATTCACACGACTTTTCGGGCCAATACAGGGTaGGGGAGCAGGTCGCGGCAG | + |
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Preference number: 4 (lower is better) Translates to: ITLHCQALRISINIHTTFRANTG*GSRSRQ Trigger: CTGCCGCGACCTGCTCCCGCACCCTGTATTGGCCCG...AAAAGTCGTGTGAATATTGATGCTAATCCTTAGGGCCTGGCAGTGTAATGTAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS-3UTR CCA 90 bp | AGGGTAAGGCAGAGCTGTTCTTCTTTCTCGGTAAGATTAAATAGTGGTCTGCGCAGGAGCTGGCGAAGCTaGGGTAGAAGGCGAACTCCT | + |
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Preference number: 4 (lower is better) Translates to: RVRQSCSSFSVRLNSGLRRSWRS*GRRRTP Trigger: AGGAGTTCGCCTTCTACCCCAGCTTCGCCAGCTCCT...GCGCAGACCACTATTTAATCTTACCGAGAAAGAAGAACAGCTCTGCCTTACCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS-3UTR TCA 90 bp | ATTACATTACACTGCCAGGCCCTAAGGATTAGCATCAATATTCACACGACTTTTGAGGTTCGTGGTGGCTaGGATGCGCCGGCGCTTCTC | + |
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Preference number: 4 (lower is better) Translates to: ITLHCQALRISINIHTTFEVRGG*DAPALL Trigger: GAGAAGCGCCGGCGCATCTCAGCCACCACGAACCTC...AAAAGTCGTGTGAATATTGATGCTAATCCTTAGGGCCTGGCAGTGTAATGTAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS-3UTR GCA 90 bp | GCTATGCTTAGGAAATCAGTGAAAAATGAAAGTGTGTGGTCTCTCCTCTCCACTTGGGCGGACTGCGACTaGTCCTTGGAGCAGTACACC | + |
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Preference number: 4 (lower is better) Translates to: AMLRKSVKNESVWSLLSTWADCD*SLEQYT Trigger: GGTGTACTGCTCCAAGGAGCAGTCGCAGTCCGCCCA...AGTGGAGAGGAGAGACCACACACTTTCATTTTTCACTGATTTCCTAAGCATAGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS-3UTR GCA 90 bp | AGAAAAATCGTAACTGGGAAAACCTTGCCTACGGAGTTCAGTAATGACAGTAAAGCCCGCGCCGGTAGCTaGTCACTTCGGGCTGTAGAG | + |
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Preference number: 4 (lower is better) Translates to: RKIVTGKTLPTEFSNDSKARAGS*SLRAVE Trigger: CTCTACAGCCCGAAGTGAGCAGCTACCGGCGCGGGC...TTTACTGTCATTACTGAACTCCGTAGGCAAGGTTTTCCCAGTTACGATTTTTCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS-3UTR CCA 90 bp | ATTACATTACACTGCCAGGCCCTAAGGATTAGCATCAATATTCACACGACTTTTCCGAGAGGTTCGTGGTaGCTGAGATGCGCCGGCGCT | + |
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Preference number: 4 (lower is better) Translates to: ITLHCQALRISINIHTTFPRGSW*LRCAGA Trigger: AGCGCCGGCGCATCTCAGCCACCACGAACCTCTCGG...AAAAGTCGTGTGAATATTGATGCTAATCCTTAGGGCCTGGCAGTGTAATGTAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS-3UTR TCA 90 bp | AGAAAAATCGTAACTGGGAAAACCTTGCCTACGGAGTTCAGTAATGACAGTAAAAGCCTTCAACAGGGATaGGCGCGTCGTGACGCGGCT | + |
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Preference number: 4 (lower is better) Translates to: RKIVTGKTLPTEFSNDSKSLQQG*ARRDAA Trigger: AGCCGCGTCACGACGCGCTCATCCCTGTTGAAGGCT...TTTACTGTCATTACTGAACTCCGTAGGCAAGGTTTTCCCAGTTACGATTTTTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS-3UTR TCA 90 bp | AGGAAGAGGCAAGAACTGAGTAATTTGGAATTCCCCAGTCCTGCTTTGGTAGGACAGGTGGAGTGGAGATaGGGCGCTTTAGATTTGCTG | + |
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Preference number: 4 (lower is better) Translates to: RKRQELSNLEFPSPALVGQVEWR*GALDLL Trigger: CAGCAAATCTAAAGCGCCTCATCTCCACTCCACCTG...TCCTACCAAAGCAGGACTGGGGAATTCCAAATTACTCAGTTCTTGCCTCTTCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS-3UTR CCA 90 bp | AGAAAAATCGTAACTGGGAAAACCTTGCCTACGGAGTTCAGTAATGACAGTAAATTGCCTGGTAGGAGCTaGCGAAGCTGGGGTAGAAGG | + |
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Preference number: 4 (lower is better) Translates to: RKIVTGKTLPTEFSNDSKLPGRS*RSWGRR Trigger: CCTTCTACCCCAGCTTCGCCAGCTCCTACCAGGCAA...TTTACTGTCATTACTGAACTCCGTAGGCAAGGTTTTCCCAGTTACGATTTTTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS-3UTR CCA 90 bp | AGAAAAATCGTAACTGGGAAAACCTTGCCTACGGAGTTCAGTAATGACAGTAAAGTAGCTGCCCCCAAATaGGTAACCATAGCCCAGGGT | + |
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Preference number: 4 (lower is better) Translates to: RKIVTGKTLPTEFSNDSKVAAPK*VTIAQG Trigger: ACCCTGGGCTATGGTTACCCATTTGGGGGCAGCTAC...TTTACTGTCATTACTGAACTCCGTAGGCAAGGTTTTCCCAGTTACGATTTTTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS CCA 90 bp | GCGGGCGGGCCAATACAGGGTGCGGGAGCAGGTCGCGGCAGTGGCTaGCCGGGCAGCTACCGCCCAGCCCGTCCATGCTCGGGGCTTTGC | + |
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Preference number: 5 (lower is better) Translates to: AGGPIQGAGAGRGSG*PGSYRPARPCSGLC Trigger: GCAAAGCCCCGAGCATGGACGGGCTGGGCGGTAGCTGCCCGGCCAGCCACTGCCGCGACCTGCTCCCGCACCCTGTATTGGCCCGCCCGC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS CCA 90 bp | AGCCCTGGAGGACAGGTCGTCACCAGGCAGCGCGCCCGACGGCTCTaGGTACTTGTCCCCCGGATGGTAGGCGCAAGGCTTCTGCTGCAG | + |
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Preference number: 5 (lower is better) Translates to: SPGGQVVTRQRARRL*VLVPRMVGARLLLQ Trigger: CTGCAGCAGAAGCCTTGCGCCTACCATCCGGGGGACAAGTACCCAGAGCCGTCGGGCGCGCTGCCTGGTGACGACCTGTCCTCCAGGGCT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS GCA 90 bp | TCTGCTGCAGGTTCACGTTGTGCGACAGGCGGCAGCCGTAGTAGCTaGCCCCAAATGGGTAACCATAGCCCAGGGTGGCGCTGGACGAGG | + |
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Preference number: 5 (lower is better) Translates to: SAAGSRCATGGSRSS*PQMGNHSPGWRWTR Trigger: CCTCGTCCAGCGCCACCCTGGGCTATGGTTACCCATTTGGGGGCAGCTACTACGGCTGCCGCCTGTCGCACAACGTGAACCTGCAGCAGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS-3UTR CAA 90 bp | ACTCGGCTTTCTAGTGGGACAAGTCACAAAGGCCAGGGGTTTAGAGACAGTCTTTGCTGCAGGTTCACGTaGTGCGACAGGCGGCAGCCG | + |
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Preference number: 5 (lower is better) Translates to: TRLSSGTSHKGQGFRDSLCCRFT*CDRRQP Trigger: CGGCTGCCGCCTGTCGCACAACGTGAACCTGCAGCA...AAGACTGTCTCTAAACCCCTGGCCTTTGTGACTTGTCCCACTAGAAAGCCGAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS-3UTR CAA 90 bp | GCTATGCTTAGGAAATCAGTGAAAAATGAAAGTGTGTGGTCTCTCCTCTCCACTTCCATGCTCGGGGCTTaGCCGGGGCTCGCTCCGCTG | + |
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Preference number: 5 (lower is better) Translates to: AMLRKSVKNESVWSLLSTSMLGA*PGLAPL Trigger: CAGCGGAGCGAGCCCCGGCAAAGCCCCGAGCATGGA...AGTGGAGAGGAGAGACCACACACTTTCATTTTTCACTGATTTCCTAAGCATAGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS-3UTR CAA 90 bp | CCTGCTTTGGTAGGAATGACTGGGCTCTCCAGGCCACTCGGCTTTCTAGTGGGATCTTTGGTGATGAATTaGCTGGCTGCGTACTCCTTC | + |
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Preference number: 5 (lower is better) Translates to: PALVGMTGLSRPLGFLVGSLVMN*LAAYSF Trigger: GAAGGAGTACGCAGCCAGCAAATTCATCACCAAAGA...TCCCACTAGAAAGCCGAGTGGCCTGGAGAGCCCAGTCATTCCTACCAAAGCAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS-3UTR CAA 90 bp | ATTACATTACACTGCCAGGCCCTAAGGATTAGCATCAATATTCACACGACTTTTCCAGGTAGCCGGGCATaGCCTGGTAGGAGCTGGCGA | + |
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Preference number: 5 (lower is better) Translates to: ITLHCQALRISINIHTTFPGSRA*PGRSWR Trigger: TCGCCAGCTCCTACCAGGCAATGCCCGGCTACCTGG...AAAAGTCGTGTGAATATTGATGCTAATCCTTAGGGCCTGGCAGTGTAATGTAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS-3UTR CAA 90 bp | AGGGTAAGGCAGAGCTGTTCTTCTTTCTCGGTAAGATTAAATAGTGGTCTGCGCCGCCGGCGCTTCTCTTaGGTGATGAATTTGCTGGCT | + |
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Preference number: 5 (lower is better) Translates to: RVRQSCSSFSVRLNSGLRRRRFS*VMNLLA Trigger: AGCCAGCAAATTCATCACCAAAGAGAAGCGCCGGCG...GCGCAGACCACTATTTAATCTTACCGAGAAAGAAGAACAGCTCTGCCTTACCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS GCA 72 bp | GCACCCAGAGGAGCCGGCGGGCGGGCCAATACAGGGTaGGGGAGCAGGTCGCGGCAGTGGCTGGCCGGGCAG | + |
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Preference number: 6 (lower is better) Translates to: APRGAGGRANTG*GSRSRQWLAGQ Trigger: CTGCCCGGCCAGCCACTGCCGCGACCTGCTCCCGCACCCTGTATTGGCCCGCCCGCCGGCTCCTCTGGGTGC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS GCA 72 bp | AGTGGCTGGCCGGGCAGCTACCGCCCAGCCCGTCCATaGTCGGGGCTTTGCCGGGGCTCGCTCCGCTGCAGC | + |
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Preference number: 6 (lower is better) Translates to: SGWPGSYRPARP*SGLCRGSLRCS Trigger: GCTGCAGCGGAGCGAGCCCCGGCAAAGCCCCGAGCATGGACGGGCTGGGCGGTAGCTGCCCGGCCAGCCACT 75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS CCA 72 bp | CCAATACAGGGTGCGGGAGCAGGTCGCGGCAGTGGCTaGCCGGGCAGCTACCGCCCAGCCCGTCCATGCTCG | + |
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Preference number: 6 (lower is better) Translates to: PIQGAGAGRGSG*PGSYRPARPCS Trigger: CGAGCATGGACGGGCTGGGCGGTAGCTGCCCGGCCAGCCACTGCCGCGACCTGCTCCCGCACCCTGTATTGG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS CCA 72 bp | GGACAGGTCGTCACCAGGCAGCGCGCCCGACGGCTCTaGGTACTTGTCCCCCGGATGGTAGGCGCAAGGCTT | + |
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Preference number: 6 (lower is better) Translates to: GQVVTRQRARRL*VLVPRMVGARL Trigger: AAGCCTTGCGCCTACCATCCGGGGGACAAGTACCCAGAGCCGTCGGGCGCGCTGCCTGGTGACGACCTGTCC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS CCA 72 bp | GTGCGACAGGCGGCAGCCGTAGTAGCTGCCCCCAAATaGGTAACCATAGCCCAGGGTGGCGCTGGACGAGGT | + |
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Preference number: 6 (lower is better) Translates to: VRQAAAVVAAPK*VTIAQGGAGRG Trigger: ACCTCGTCCAGCGCCACCCTGGGCTATGGTTACCCATTTGGGGGCAGCTACTACGGCTGCCGCCTGTCGCAC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS GCA 72 bp | GGTTCACGTTGTGCGACAGGCGGCAGCCGTAGTAGCTaGCCCCAAATGGGTAACCATAGCCCAGGGTGGCGC | + |
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Preference number: 6 (lower is better) Translates to: GSRCATGGSRSS*PQMGNHSPGWR Trigger: GCGCCACCCTGGGCTATGGTTACCCATTTGGGGGCAGCTACTACGGCTGCCGCCTGTCGCACAACGTGAACC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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| CDS GCA 72 bp | TATAGGGCACGCGCTTCTTGCGCCCGCGCCGGTAGCTaGTCACTTCGGGCTGTAGAGGAACCACGTCTGGGA | + |
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Preference number: 6 (lower is better) Translates to: YRARASCARAGS*SLRAVEEPRLG Trigger: TCCCAGACGTGGTTCCTCTACAGCCCGAAGTGAGCAGCTACCGGCGCGGGCGCAAGAAGCGCGTGCCCTATA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001700.7 |
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