Pregenerated sensors for HOXC12 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050328Ensembl transcript IDs: ENSMUST00000055562.3
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | CCCCTCTTGCTCCACCAAGGCAAGCTTAGTCTGGGGCTAGCACGCTTGTCCTGCGAAGCCGAGCGCAGGTaGCCCCGACGGCTCCAGCTG | + |
|
Preference number: 4 (lower is better) Translates to: PLLLHQGKLSLGLARLSCEAERR*PRRLQL Trigger: CAGCTGGAGCCGTCGGGGCCACCTGCGCTCGGCTTC...GCAGGACAAGCGTGCTAGCCCCAGACTAAGCTTGCCTTGGTGGAGCAAGAGGGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS-3UTR TCA 90 bp | CGCCCCCTCTTGCTCCACCAAGGCAAGCTTAGTCTGGGGCTAGCACGCTTGTCCCGGGAGTTGTGCCCCTaGCGCGCGGAAGTTGGGGAA | + |
|
Preference number: 4 (lower is better) Translates to: RPLLLHQGKLSLGLARLSRELCP*RAEVGE Trigger: TTCCCCAACTTCCGCGCGTCAGGGGCACAACTCCCG...GGACAAGCGTGCTAGCCCCAGACTAAGCTTGCCTTGGTGGAGCAAGAGGGGGCG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS-3UTR GCA 90 bp | CTCTTGCTCCACCAAGGCAAGCTTAGTCTGGGGCTAGCACGCTTGTCCTGCTCCCCCGACGGCTCCAGCTaGAGTAGCGCTGCCCCGGGT | + |
|
Preference number: 4 (lower is better) Translates to: LLLHQGKLSLGLARLSCSPDGSS*SSAAPG Trigger: ACCCGGGGCAGCGCTACTGCAGCTGGAGCCGTCGGG...GGAGCAGGACAAGCGTGCTAGCCCCAGACTAAGCTTGCCTTGGTGGAGCAAGAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS-3UTR GCA 90 bp | CTCTTGCTCCACCAAGGCAAGCTTAGTCTGGGGCTAGCACGCTTGTCCTGCTCCGCTGTGGGTAGCCATTaGACGGCTCGGCCGACGGCC | + |
|
Preference number: 4 (lower is better) Translates to: LLLHQGKLSLGLARLSCSAVGSH*TARPTA Trigger: GGCCGTCGGCCGAGCCGTGCAATGGCTACCCACAGC...GGAGCAGGACAAGCGTGCTAGCCCCAGACTAAGCTTGCCTTGGTGGAGCAAGAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS-3UTR TCA 90 bp | CGCCCCCTCTTGCTCCACCAAGGCAAGCTTAGTCTGGGGCTAGCACGCTTGTCCGGAGTCGGATTCCAGTaGCTGGCACGAGGGTGGATC | + |
|
Preference number: 4 (lower is better) Translates to: RPLLLHQGKLSLGLARLSGVGFQ*LARGWI Trigger: GATCCACCCTCGTGCCAGTCACTGGAATCCGACTCC...GGACAAGCGTGCTAGCCCCAGACTAAGCTTGCCTTGGTGGAGCAAGAGGGGGCG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS-3UTR CCA 90 bp | CTCTTGCTCCACCAAGGCAAGCTTAGTCTGGGGCTAGCACGCTTGTCCTGCTCCTTTCGCGAGCGGCTGTaGATCGGGTACCAGGGCGCG | + |
|
Preference number: 4 (lower is better) Translates to: LLLHQGKLSLGLARLSCSFRERL*IGYQGA Trigger: CGCGCCCTGGTACCCGATCCACAGCCGCTCGCGAAA...GGAGCAGGACAAGCGTGCTAGCCCCAGACTAAGCTTGCCTTGGTGGAGCAAGAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS-3UTR TCA 90 bp | CTCTTGCTCCACCAAGGCAAGCTTAGTCTGGGGCTAGCACGCTTGTCCTGCTCCCCGTGTAGTCGTACTTaGAGCCGAGCGCAGGTGGCC | + |
|
Preference number: 4 (lower is better) Translates to: LLLHQGKLSLGLARLSCSPCSRT*SRAQVA Trigger: GGCCACCTGCGCTCGGCTTCAAGTACGACTACACGG...GGAGCAGGACAAGCGTGCTAGCCCCAGACTAAGCTTGCCTTGGTGGAGCAAGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS-3UTR CCA 90 bp | CTCTTGCTCCACCAAGGCAAGCTTAGTCTGGGGCTAGCACGCTTGTCCTGCTCCCACGTTGTCGCGGCGTaGGTAGGACAGCGAAGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: LLLHQGKLSLGLARLSCSHVVAA*VGQRRQ Trigger: CTGCCTTCGCTGTCCTACCCACGCCGCGACAACGTG...GGAGCAGGACAAGCGTGCTAGCCCCAGACTAAGCTTGCCTTGGTGGAGCAAGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS-3UTR CCA 90 bp | CCCCTCTTGCTCCACCAAGGCAAGCTTAGTCTGGGGCTAGCACGCTTGTCCTGCGCCGAGATAGGGCTGTaGGTAGCCATTGCACGGCTC | + |
|
Preference number: 4 (lower is better) Translates to: PLLLHQGKLSLGLARLSCAEIGL*VAIARL Trigger: GAGCCGTGCAATGGCTACCCACAGCCCTATCTCGGC...GCAGGACAAGCGTGCTAGCCCCAGACTAAGCTTGCCTTGGTGGAGCAAGAGGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS-3UTR GCA 90 bp | CGCCCCCTCTTGCTCCACCAAGGCAAGCTTAGTCTGGGGCTAGCACGCTTGTCCCTCGGTAGTAACCCTTaGTATCCTCCACGCGAGCCA | + |
|
Preference number: 4 (lower is better) Translates to: RPLLLHQGKLSLGLARLSLGSNP*YPPREP Trigger: TGGCTCGCGTGGAGGATAGCAAGGGTTACTACCGAG...GGACAAGCGTGCTAGCCCCAGACTAAGCTTGCCTTGGTGGAGCAAGAGGGGGCG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS-3UTR CCA 90 bp | CGCCCCCTCTTGCTCCACCAAGGCAAGCTTAGTCTGGGGCTAGCACGCTTGTCCAGTTCCCTCCGACGCTaGCGTGTGATGAACTCGTTG | + |
|
Preference number: 4 (lower is better) Translates to: RPLLLHQGKLSLGLARLSSSLRR*RVMNSL Trigger: CAACGAGTTCATCACACGCCAGCGTCGGAGGGAACT...GGACAAGCGTGCTAGCCCCAGACTAAGCTTGCCTTGGTGGAGCAAGAGGGGGCG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS-3UTR GCA 90 bp | CGCCCCCTCTTGCTCCACCAAGGCAAGCTTAGTCTGGGGCTAGCACGCTTGTCCTCCAGCTCAGCCAGCTaGAACTTCGAATACGGCTTG | + |
|
Preference number: 4 (lower is better) Translates to: RPLLLHQGKLSLGLARLSSSSAS*NFEYGL Trigger: CAAGCCGTATTCGAAGTTGCAGCTGGCTGAGCTGGA...GGACAAGCGTGCTAGCCCCAGACTAAGCTTGCCTTGGTGGAGCAAGAGGGGGCG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS-3UTR CCA 90 bp | CTCTTGCTCCACCAAGGCAAGCTTAGTCTGGGGCTAGCACGCTTGTCCTGCTCCTCGGATTCCAGTGACTaGCACGAGGGTGGATCGTGG | + |
|
Preference number: 4 (lower is better) Translates to: LLLHQGKLSLGLARLSCSSDSSD*HEGGSW Trigger: CCACGATCCACCCTCGTGCCAGTCACTGGAATCCGA...GGAGCAGGACAAGCGTGCTAGCCCCAGACTAAGCTTGCCTTGGTGGAGCAAGAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS-3UTR CCA 90 bp | CTCTTGCTCCACCAAGGCAAGCTTAGTCTGGGGCTAGCACGCTTGTCCTGCTCCAAGGTGTCTCCTGTGTaGATATTCACCAGCGGCCCC | + |
|
Preference number: 4 (lower is better) Translates to: LLLHQGKLSLGLARLSCSKVSPV*IFTSGP Trigger: GGGGCCGCTGGTGAATATCCACACAGGAGACACCTT...GGAGCAGGACAAGCGTGCTAGCCCCAGACTAAGCTTGCCTTGGTGGAGCAAGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS-3UTR CCA 90 bp | CTCTTGCTCCACCAAGGCAAGCTTAGTCTGGGGCTAGCACGCTTGTCCTGCTCCCTGACGCGCGGAAGTTaGGGAAGTAGAAGGTGTCTC | + |
|
Preference number: 4 (lower is better) Translates to: LLLHQGKLSLGLARLSCSLTRGS*GSRRCL Trigger: GAGACACCTTCTACTTCCCCAACTTCCGCGCGTCAG...GGAGCAGGACAAGCGTGCTAGCCCCAGACTAAGCTTGCCTTGGTGGAGCAAGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS-3UTR GCA 90 bp | CGCCCCCTCTTGCTCCACCAAGGCAAGCTTAGTCTGGGGCTAGCACGCTTGTCCAAGAAGGAGAGAGCTTaGTCCCTCAGCAGAAGTCTT | + |
|
Preference number: 4 (lower is better) Translates to: RPLLLHQGKLSLGLARLSKKERA*SLSRSL Trigger: AAGACTTCTGCTGAGGGAGCAAGCTCTCTCCTTCTT...GGACAAGCGTGCTAGCCCCAGACTAAGCTTGCCTTGGTGGAGCAAGAGGGGGCG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS-3UTR TCA 90 bp | CTCTTGCTCCACCAAGGCAAGCTTAGTCTGGGGCTAGCACGCTTGTCCTGCTCCTCTTATTGCCCTCGTTaGGTAGGGACGAACTGGAGT | + |
|
Preference number: 4 (lower is better) Translates to: LLLHQGKLSLGLARLSCSSYCPR*VGTNWS Trigger: ACTCCAGTTCGTCCCTACTCAACGAGGGCAATAAGA...GGAGCAGGACAAGCGTGCTAGCCCCAGACTAAGCTTGCCTTGGTGGAGCAAGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS-3UTR TCA 90 bp | CTCTTGCTCCACCAAGGCAAGCTTAGTCTGGGGCTAGCACGCTTGTCCTGCTCCCAAATCTTGACCTGCTaGTCACTAAGATTCAAGCGG | + |
|
Preference number: 4 (lower is better) Translates to: LLLHQGKLSLGLARLSCSQILTC*SLRFKR Trigger: CCGCTTGAATCTTAGTGATCAGCAGGTCAAGATTTG...GGAGCAGGACAAGCGTGCTAGCCCCAGACTAAGCTTGCCTTGGTGGAGCAAGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS CCA 90 bp | GCCGAAAGGCGGGTTGAGAGACACGGGACTGCCGAGATAGGGCTGTaGGTAGCCATTGCACGGCTCGGCCGACGGCCAAGGCAGCGAGCA | + |
|
Preference number: 5 (lower is better) Translates to: AERRVERHGTAEIGL*VAIARLGRRPRQRA Trigger: TGCTCGCTGCCTTGGCCGTCGGCCGAGCCGTGCAATGGCTACCCACAGCCCTATCTCGGCAGTCCCGTGTCTCTCAACCCGCCTTTCGGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS CCA 90 bp | AGCTGCAACTTCGAATACGGCTTGCGCTTCTTTCGCGAGCGGCTGTaGATCGGGTACCAGGGCGCGCCGCTGGCTGAGAGCCCGCCGCCT | + |
|
Preference number: 5 (lower is better) Translates to: SCNFEYGLRFFRERL*IGYQGAPLAESPPP Trigger: AGGCGGCGGGCTCTCAGCCAGCGGCGCGCCCTGGTACCCGATCCACAGCCGCTCGCGAAAGAAGCGCAAGCCGTATTCGAAGTTGCAGCT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS-3UTR CAA 90 bp | CGCCCCCTCTTGCTCCACCAAGGCAAGCTTAGTCTGGGGCTAGCACGCTTGTCCCGGCCGAAAGGCGGGTaGAGAGACACGGGACTGCCG | + |
|
Preference number: 5 (lower is better) Translates to: RPLLLHQGKLSLGLARLSRPKGG*RDTGLP Trigger: CGGCAGTCCCGTGTCTCTCAACCCGCCTTTCGGCCG...GGACAAGCGTGCTAGCCCCAGACTAAGCTTGCCTTGGTGGAGCAAGAGGGGGCG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS TCA 90 bp | TATCCTCCACGCGAGCCAACTCGCACGTGCGGCCGAAAGGCGGGTTaGGAGACACGGGACTGCCGAGATAGGGCTGTGGGTAGCCATTGC | + |
|
Preference number: 5 (lower is better) Translates to: YPPREPTRTCGRKAG*ETRDCRDRAVGSHC Trigger: GCAATGGCTACCCACAGCCCTATCTCGGCAGTCCCGTGTCTCTCAACCCGCCTTTCGGCCGCACGTGCGAGTTGGCTCGCGTGGAGGATA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS GCA 90 bp | GAAACTCGCCCTCCAGCTCAGCCAGCTGCAACTTCGAATACGGCTTaGGCTTCTTTCGCGAGCGGCTGTGGATCGGGTACCAGGGCGCGC | + |
|
Preference number: 5 (lower is better) Translates to: ETRPPAQPAATSNTA*ASFASGCGSGTRAR Trigger: GCGCGCCCTGGTACCCGATCCACAGCCGCTCGCGAAAGAAGCGCAAGCCGTATTCGAAGTTGCAGCTGGCTGAGCTGGAGGGCGAGTTTC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS CCA 90 bp | ACAGCGAAGGCAGCCCCGGGAGTTGTGCCCCTGACGCGCGGAAGTTaGGGAAGTAGAAGGTGTCTCCTGTGTGGATATTCACCAGCGGCC | + |
|
Preference number: 5 (lower is better) Translates to: TAKAAPGVVPLTRGS*GSRRCLLCGYSPAA Trigger: GGCCGCTGGTGAATATCCACACAGGAGACACCTTCTACTTCCCCAACTTCCGCGCGTCAGGGGCACAACTCCCGGGGCTGCCTTCGCTGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS TCA 90 bp | CCAGAGAGCCAGGGTCACCAGCGCTGGCGCTCTTATTGCCCTCGTTaGGTAGGGACGAACTGGAGTCGGATTCCAGTGACTGGCACGAGG | + |
|
Preference number: 5 (lower is better) Translates to: PESQGHQRWRSYCPR*VGTNWSRIPVTGTR Trigger: CCTCGTGCCAGTCACTGGAATCCGACTCCAGTTCGTCCCTACTCAACGAGGGCAATAAGAGCGCCAGCGCTGGTGACCCTGGCTCTCTGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS-3UTR CAA 90 bp | CCCCTCTTGCTCCACCAAGGCAAGCTTAGTCTGGGGCTAGCACGCTTGTCCTGCGCGCTGGCGCTCTTATaGCCCTCGTTGAGTAGGGAC | + |
|
Preference number: 5 (lower is better) Translates to: PLLLHQGKLSLGLARLSCALALL*PSLSRD Trigger: GTCCCTACTCAACGAGGGCAATAAGAGCGCCAGCGC...GCAGGACAAGCGTGCTAGCCCCAGACTAAGCTTGCCTTGGTGGAGCAAGAGGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS-3UTR CAA 90 bp | CGCCCCCTCTTGCTCCACCAAGGCAAGCTTAGTCTGGGGCTAGCACGCTTGTCCCTCTTATTGCCCTCGTaGAGTAGGGACGAACTGGAG | + |
|
Preference number: 5 (lower is better) Translates to: RPLLLHQGKLSLGLARLSLLLPS*SRDELE Trigger: CTCCAGTTCGTCCCTACTCAACGAGGGCAATAAGAG...GGACAAGCGTGCTAGCCCCAGACTAAGCTTGCCTTGGTGGAGCAAGAGGGGGCG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS-3UTR CAA 90 bp | CCCCTCTTGCTCCACCAAGGCAAGCTTAGTCTGGGGCTAGCACGCTTGTCCTGCAACTTCGAATACGGCTaGCGCTTCTTTCGCGAGCGG | + |
|
Preference number: 5 (lower is better) Translates to: PLLLHQGKLSLGLARLSCNFEYG*RFFRER Trigger: CCGCTCGCGAAAGAAGCGCAAGCCGTATTCGAAGTT...GCAGGACAAGCGTGCTAGCCCCAGACTAAGCTTGCCTTGGTGGAGCAAGAGGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS GCA 90 bp | GTGATGAACTCGTTGACCAGAAACTCGCCCTCCAGCTCAGCCAGCTaGAACTTCGAATACGGCTTGCGCTTCTTTCGCGAGCGGCTGTGG | + |
|
Preference number: 5 (lower is better) Translates to: VMNSLTRNSPSSSAS*NFEYGLRFFRERLW Trigger: CCACAGCCGCTCGCGAAAGAAGCGCAAGCCGTATTCGAAGTTGCAGCTGGCTGAGCTGGAGGGCGAGTTTCTGGTCAACGAGTTCATCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS-3UTR CAA 90 bp | CCCCTCTTGCTCCACCAAGGCAAGCTTAGTCTGGGGCTAGCACGCTTGTCCTGCGAAGAAGGAGAGAGCTaGCTCCCTCAGCAGAAGTCT | + |
|
Preference number: 5 (lower is better) Translates to: PLLLHQGKLSLGLARLSCEEGES*LPQQKS Trigger: AGACTTCTGCTGAGGGAGCAAGCTCTCTCCTTCTTC...GCAGGACAAGCGTGCTAGCCCCAGACTAAGCTTGCCTTGGTGGAGCAAGAGGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS TCA 72 bp | CGCGAGCCAACTCGCACGTGCGGCCGAAAGGCGGGTTaGGAGACACGGGACTGCCGAGATAGGGCTGTGGGT | + |
|
Preference number: 6 (lower is better) Translates to: REPTRTCGRKAG*ETRDCRDRAVG Trigger: ACCCACAGCCCTATCTCGGCAGTCCCGTGTCTCTCAACCCGCCTTTCGGCCGCACGTGCGAGTTGGCTCGCG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS GCA 72 bp | ACACGGGACTGCCGAGATAGGGCTGTGGGTAGCCATTaGACGGCTCGGCCGACGGCCAAGGCAGCGAGCACA | + |
|
Preference number: 6 (lower is better) Translates to: TRDCRDRAVGSH*TARPTAKAAST Trigger: TGTGCTCGCTGCCTTGGCCGTCGGCCGAGCCGTGCAATGGCTACCCACAGCCCTATCTCGGCAGTCCCGTGT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS GCA 72 bp | CGCCGCCCTCAGCGCAGGGTTCTCGGTAGTAACCCTTaGTATCCTCCACGCGAGCCAACTCGCACGTGCGGC | + |
|
Preference number: 6 (lower is better) Translates to: RRPQRRVLGSNP*YPPREPTRTCG Trigger: GCCGCACGTGCGAGTTGGCTCGCGTGGAGGATAGCAAGGGTTACTACCGAGAACCCTGCGCTGAGGGCGGCG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS CCA 72 bp | CGGGTTGAGAGACACGGGACTGCCGAGATAGGGCTGTaGGTAGCCATTGCACGGCTCGGCCGACGGCCAAGG | + |
|
Preference number: 6 (lower is better) Translates to: RVERHGTAEIGL*VAIARLGRRPR Trigger: CCTTGGCCGTCGGCCGAGCCGTGCAATGGCTACCCACAGCCCTATCTCGGCAGTCCCGTGTCTCTCAACCCG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS CCA 72 bp | TTCGAATACGGCTTGCGCTTCTTTCGCGAGCGGCTGTaGATCGGGTACCAGGGCGCGCCGCTGGCTGAGAGC | + |
|
Preference number: 6 (lower is better) Translates to: FEYGLRFFRERL*IGYQGAPLAES Trigger: GCTCTCAGCCAGCGGCGCGCCCTGGTACCCGATCCACAGCCGCTCGCGAAAGAAGCGCAAGCCGTATTCGAA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS CAA 90 bp | AGAAACTCGCCCTCCAGCTCAGCCAGCTGCAACTTCGAATACGGCTaGCGCTTCTTTCGCGAGCGGCTGTGGATCGGGTACCAGGGCGCG | + |
|
Preference number: 6 (lower is better) Translates to: RNSPSSSASCNFEYG*RFFRERLWIGYQGA Trigger: CGCGCCCTGGTACCCGATCCACAGCCGCTCGCGAAAGAAGCGCAAGCCGTATTCGAAGTTGCAGCTGGCTGAGCTGGAGGGCGAGTTTCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS GCA 72 bp | CCTCCAGCTCAGCCAGCTGCAACTTCGAATACGGCTTaGGCTTCTTTCGCGAGCGGCTGTGGATCGGGTACC | + |
|
Preference number: 6 (lower is better) Translates to: PPAQPAATSNTA*ASFASGCGSGT Trigger: GGTACCCGATCCACAGCCGCTCGCGAAAGAAGCGCAAGCCGTATTCGAAGTTGCAGCTGGCTGAGCTGGAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS CAA 72 bp | CCCTCCAGCTCAGCCAGCTGCAACTTCGAATACGGCTaGCGCTTCTTTCGCGAGCGGCTGTGGATCGGGTAC | + |
|
Preference number: 6 (lower is better) Translates to: PSSSASCNFEYG*RFFRERLWIGY Trigger: GTACCCGATCCACAGCCGCTCGCGAAAGAAGCGCAAGCCGTATTCGAAGTTGCAGCTGGCTGAGCTGGAGGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS CAA 90 bp | ACCAGAGAGCCAGGGTCACCAGCGCTGGCGCTCTTATTGCCCTCGTaGAGTAGGGACGAACTGGAGTCGGATTCCAGTGACTGGCACGAG | + |
|
Preference number: 6 (lower is better) Translates to: TREPGSPALALLLPS*SRDELESDSSDWHE Trigger: CTCGTGCCAGTCACTGGAATCCGACTCCAGTTCGTCCCTACTCAACGAGGGCAATAAGAGCGCCAGCGCTGGTGACCCTGGCTCTCTGGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS CCA 72 bp | GCAGCCCCGGGAGTTGTGCCCCTGACGCGCGGAAGTTaGGGAAGTAGAAGGTGTCTCCTGTGTGGATATTCA | + |
|
Preference number: 6 (lower is better) Translates to: AAPGVVPLTRGS*GSRRCLLCGYS Trigger: TGAATATCCACACAGGAGACACCTTCTACTTCCCCAACTTCCGCGCGTCAGGGGCACAACTCCCGGGGCTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS CAA 72 bp | CCAGGGTCACCAGCGCTGGCGCTCTTATTGCCCTCGTaGAGTAGGGACGAACTGGAGTCGGATTCCAGTGAC | + |
|
Preference number: 6 (lower is better) Translates to: PGSPALALLLPS*SRDELESDSSD Trigger: GTCACTGGAATCCGACTCCAGTTCGTCCCTACTCAACGAGGGCAATAAGAGCGCCAGCGCTGGTGACCCTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS CAA 72 bp | ACCAGAGAGCCAGGGTCACCAGCGCTGGCGCTCTTATaGCCCTCGTTGAGTAGGGACGAACTGGAGTCGGAT | + |
|
Preference number: 6 (lower is better) Translates to: TREPGSPALALL*PSLSRDELESD Trigger: ATCCGACTCCAGTTCGTCCCTACTCAACGAGGGCAATAAGAGCGCCAGCGCTGGTGACCCTGGCTCTCTGGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS CAA 90 bp | AACGGCGAAACCAGAGAGCCAGGGTCACCAGCGCTGGCGCTCTTATaGCCCTCGTTGAGTAGGGACGAACTGGAGTCGGATTCCAGTGAC | + |
|
Preference number: 6 (lower is better) Translates to: NGETREPGSPALALL*PSLSRDELESDSSD Trigger: GTCACTGGAATCCGACTCCAGTTCGTCCCTACTCAACGAGGGCAATAAGAGCGCCAGCGCTGGTGACCCTGGCTCTCTGGTTTCGCCGTT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS TCA 72 bp | CAGGGTCACCAGCGCTGGCGCTCTTATTGCCCTCGTTaGGTAGGGACGAACTGGAGTCGGATTCCAGTGACT | + |
|
Preference number: 6 (lower is better) Translates to: QGHQRWRSYCPR*VGTNWSRIPVT Trigger: AGTCACTGGAATCCGACTCCAGTTCGTCCCTACTCAACGAGGGCAATAAGAGCGCCAGCGCTGGTGACCCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS GCA 72 bp | TCGTTGACCAGAAACTCGCCCTCCAGCTCAGCCAGCTaGAACTTCGAATACGGCTTGCGCTTCTTTCGCGAG | + |
|
Preference number: 6 (lower is better) Translates to: SLTRNSPSSSAS*NFEYGLRFFRE Trigger: CTCGCGAAAGAAGCGCAAGCCGTATTCGAAGTTGCAGCTGGCTGAGCTGGAGGGCGAGTTTCTGGTCAACGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||
| CDS CCA 72 bp | CTAAGATTCAAGCGGTCCGAGAGTTCCCTCCGACGCTaGCGTGTGATGAACTCGTTGACCAGAAACTCGCCC | + |
|
Preference number: 6 (lower is better) Translates to: LRFKRSESSLRR*RVMNSLTRNSP Trigger: GGGCGAGTTTCTGGTCAACGAGTTCATCACACGCCAGCGTCGGAGGGAACTCTCGGACCGCTTGAATCTTAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055562.3 |
||