Pregenerated sensors for HOXC11 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001656Ensembl transcript IDs: ENSMUST00000001701.4
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGGGAAGACTTGAGTTCAAGGATTGTTCGGCTCTGGCGCCCACTGTaGCCGCCCCTCCTCTCACCCAATCCGAGCAGCAAGACATTGTTG | + |
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Preference number: 1 (lower is better) Translates to: REDLSSRIVRLWRPL*PPLLSPNPSSKTLL Trigger: CAACAATGTCTTGCTGCTCGGATTGGGTGAGAGGAGGGGCGGTCACAGTGGGCGCCAGAGCCGAACAATCCTTGAACTCAAGTCTTCCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| 3UTR TCA 90 bp | GACAAGGTGGCTCAGTGGATCTTTTCACTTGGGCTAGGGAAGACTTaGGTTCAAGGATTGTTCGGCTCTGGCGCCCACTGTGACCGCCCC | + |
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Preference number: 1 (lower is better) Translates to: DKVAQWIFSLGLGKT*VQGLFGSGAHCDRP Trigger: GGGGCGGTCACAGTGGGCGCCAGAGCCGAACAATCCTTGAACTCAAGTCTTCCCTAGCCCAAGTGAAAAGATCCACTGAGCCACCTTGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| 3UTR GCA 90 bp | AGGCTCAGGCGGGGCCAGGCGCAGACGGAGGTAGGATTTGGACTTTaGACACCTAACACCAGGTCAAACGTACAGGGATTTCACAGCAAG | + |
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Preference number: 1 (lower is better) Translates to: RLRRGQAQTEVGFGL*TPNTRSNVQGFHSK Trigger: CTTGCTGTGAAATCCCTGTACGTTTGACCTGGTGTTAGGTGTGCAAAGTCCAAATCCTACCTCCGTCTGCGCCTGGCCCCGCCTGAGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| 3UTR CCA 90 bp | CCACTAACCACGGGTCAGACACTTCCCTCACCTCCTTTTCCAGGCTaGGTCTCTGTTCCCTACAGTGAATTAGACCCAAGGCCAAGGAGG | + |
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Preference number: 1 (lower is better) Translates to: PLTTGQTLPSPPFPG*VSVPYSELDPRPRR Trigger: CCTCCTTGGCCTTGGGTCTAATTCACTGTAGGGAACAGAGACCCAGCCTGGAAAAGGAGGTGAGGGAAGTGTCTGACCCGTGGTTAGTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| 3UTR TCA 90 bp | ACTTCCCTCACCTCCTTTTCCAGGCTGGGTCTCTGTTCCCTACAGTaGATTAGACCCAAGGCCAAGGAGGTTCTAGAAGGAAGTGCCAGT | + |
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Preference number: 1 (lower is better) Translates to: TSLTSFSRLGLCSLQ*IRPKAKEVLEGSAS Trigger: ACTGGCACTTCCTTCTAGAACCTCCTTGGCCTTGGGTCTAATTCACTGTAGGGAACAGAGACCCAGCCTGGAAAAGGAGGTGAGGGAAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| 3UTR-3UTR GCA 90 bp | GCTAGAGGGAGGTGCCCAACCCCATCTTCCTATGCCCCTTCCACCTCAATCCTGGTAGGATTTGGACTTTaGACACCTAACACCAGGTCA | + |
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Preference number: 2 (lower is better) Translates to: ARGRCPTPSSYAPSTSILVGFGL*TPNTRS Trigger: TGACCTGGTGTTAGGTGTGCAAAGTCCAAATCCTAC...CAGGATTGAGGTGGAAGGGGCATAGGAAGATGGGGTTGGGCACCTCCCTCTAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| 3UTR-3UTR TCA 90 bp | GGATTTGGACTTTGCACACCTAACACCAGGTCAAACGTACAGGGATTTCACAGCGGGCTAGGGAAGACTTaGGTTCAAGGATTGTTCGGC | + |
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Preference number: 2 (lower is better) Translates to: GFGLCTPNTRSNVQGFHSGLGKT*VQGLFG Trigger: GCCGAACAATCCTTGAACTCAAGTCTTCCCTAGCCC...GCTGTGAAATCCCTGTACGTTTGACCTGGTGTTAGGTGTGCAAAGTCCAAATCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| 3UTR TCA 72 bp | TTGAGTTCAAGGATTGTTCGGCTCTGGCGCCCACTGTaGCCGCCCCTCCTCTCACCCAATCCGAGCAGCAAG | + |
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Preference number: 3 (lower is better) Translates to: LSSRIVRLWRPL*PPLLSPNPSSK Trigger: CTTGCTGCTCGGATTGGGTGAGAGGAGGGGCGGTCACAGTGGGCGCCAGAGCCGAACAATCCTTGAACTCAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| 3UTR TCA 72 bp | CATACACACGCACTCACGCACATGGATAGAGATGGGTaGTTAGAACCTCACTCCGGCTCAGCCTCCCCCTTC | + |
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Preference number: 3 (lower is better) Translates to: HTHALTHMDRDG*LEPHSGSASPF Trigger: GAAGGGGGAGGCTGAGCCGGAGTGAGGTTCTAATCACCCATCTCTATCCATGTGCGTGAGTGCGTGTGTATG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| 3UTR GCA 72 bp | CGGGGCCAGGCGCAGACGGAGGTAGGATTTGGACTTTaGACACCTAACACCAGGTCAAACGTACAGGGATTT | + |
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Preference number: 3 (lower is better) Translates to: RGQAQTEVGFGL*TPNTRSNVQGF Trigger: AAATCCCTGTACGTTTGACCTGGTGTTAGGTGTGCAAAGTCCAAATCCTACCTCCGTCTGCGCCTGGCCCCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| 3UTR CCA 72 bp | ACGGGTCAGACACTTCCCTCACCTCCTTTTCCAGGCTaGGTCTCTGTTCCCTACAGTGAATTAGACCCAAGG | + |
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Preference number: 3 (lower is better) Translates to: TGQTLPSPPFPG*VSVPYSELDPR Trigger: CCTTGGGTCTAATTCACTGTAGGGAACAGAGACCCAGCCTGGAAAAGGAGGTGAGGGAAGTGTCTGACCCGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| 3UTR TCA 72 bp | GCTCAGTGGATCTTTTCACTTGGGCTAGGGAAGACTTaGGTTCAAGGATTGTTCGGCTCTGGCGCCCACTGT | + |
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Preference number: 3 (lower is better) Translates to: AQWIFSLGLGKT*VQGLFGSGAHC Trigger: ACAGTGGGCGCCAGAGCCGAACAATCCTTGAACTCAAGTCTTCCCTAGCCCAAGTGAAAAGATCCACTGAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| 3UTR-3UTR CAA 90 bp | GGACTTTGCACACCTAACACCAGGTCAAACGTACAGGGATTTCACAGCAAGGCATGGGCTAGGGAAGACTaGAGTTCAAGGATTGTTCGG | + |
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Preference number: 3 (lower is better) Translates to: GLCTPNTRSNVQGFHSKAWARED*SSRIVR Trigger: CCGAACAATCCTTGAACTCAAGTCTTCCCTAGCCCA...TGCCTTGCTGTGAAATCCCTGTACGTTTGACCTGGTGTTAGGTGTGCAAAGTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| CDS-3UTR CCA 90 bp | GGCGCCACGGGGTCCACTAACCACGGGTCAGACACTTCCCTCACCTCCTTTTCCTGGGGGCGGCTCCCTTaGCCGGCTCCTTGGTCGCCG | + |
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Preference number: 4 (lower is better) Translates to: GATGSTNHGSDTSLTSFSWGRLP*PAPWSP Trigger: CGGCGACCAAGGAGCCGGCCAAGGGAGCCGCCCCCA...GGAAAAGGAGGTGAGGGAAGTGTCTGACCCGTGGTTAGTGGACCCCGTGGCGCC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| CDS-3UTR CCA 90 bp | GGCGCCACGGGGTCCACTAACCACGGGTCAGACACTTCCCTCACCTCCTTTTCCCCTCAGGCTCCCCCTTaGCCTCGCCCTTGCCGGAGC | + |
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Preference number: 4 (lower is better) Translates to: GATGSTNHGSDTSLTSFSPQAPP*PRPCRS Trigger: GCTCCGGCAAGGGCGAGGCCAAGGGGGAGCCTGAGG...GGAAAAGGAGGTGAGGGAAGTGTCTGACCCGTGGTTAGTGGACCCCGTGGCGCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| CDS-3UTR CCA 90 bp | GGGGAGCCTGGGAGGTCTTGCAGACAAGGTGGCTCAGTGGATCTTTTCACTTGGCCTTGGCCGGCTCCTTaGTCGCCGAGTGGGAAGAAC | + |
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Preference number: 4 (lower is better) Translates to: GEPGRSCRQGGSVDLFTWPWPAP*SPSGKN Trigger: GTTCTTCCCACTCGGCGACCAAGGAGCCGGCCAAGG...CCAAGTGAAAAGATCCACTGAGCCACCTTGTCTGCAAGACCTCCCAGGCTCCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| CDS-3UTR TCA 90 bp | AGACTTGAGTTCAAGGATTGTTCGGCTCTGGCGCCCACTGTGACCGCCCCTCCTCGGGGGCACTTGGGCTaGGTAGGGATAAGAAATCTG | + |
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Preference number: 4 (lower is better) Translates to: RLEFKDCSALAPTVTAPPRGHLG*VGIRNL Trigger: CAGATTTCTTATCCCTACTCAGCCCAAGTGCCCCCG...AGGAGGGGCGGTCACAGTGGGCGCCAGAGCCGAACAATCCTTGAACTCAAGTCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| CDS-3UTR GCA 90 bp | GGCGCCACGGGGTCCACTAACCACGGGTCAGACACTTCCCTCACCTCCTTTTCCCAGGCACGTAGTAAGTaGAACTGGGCAGATAGAGGT | + |
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Preference number: 4 (lower is better) Translates to: GATGSTNHGSDTSLTSFSQARSK*NWADRG Trigger: ACCTCTATCTGCCCAGTTGCACTTACTACGTGCCTG...GGAAAAGGAGGTGAGGGAAGTGTCTGACCCGTGGTTAGTGGACCCCGTGGCGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| CDS-3UTR CCA 90 bp | AGACTTGAGTTCAAGGATTGTTCGGCTCTGGCGCCCACTGTGACCGCCCCTCCTTGGGCAGATAGAGGTTaGAGGTGCAGCTCCCTCGTT | + |
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Preference number: 4 (lower is better) Translates to: RLEFKDCSALAPTVTAPPWADRG*RCSSLV Trigger: AACGAGGGAGCTGCACCTCCAACCTCTATCTGCCCA...AGGAGGGGCGGTCACAGTGGGCGCCAGAGCCGAACAATCCTTGAACTCAAGTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| CDS-3UTR GCA 90 bp | GGATTTGGACTTTGCACACCTAACACCAGGTCAAACGTACAGGGATTTCACAGCGGCAGGCACTCCCGGTaGATAAGCTCGTCGGCCGCC | + |
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Preference number: 4 (lower is better) Translates to: GFGLCTPNTRSNVQGFHSGRHSR*ISSSAA Trigger: GGCGGCCGACGAGCTTATGCACCGGGAGTGCCTGCC...GCTGTGAAATCCCTGTACGTTTGACCTGGTGTTAGGTGTGCAAAGTCCAAATCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| CDS-3UTR CCA 90 bp | GGGGAGCCTGGGAGGTCTTGCAGACAAGGTGGCTCAGTGGATCTTTTCACTTGGAAGAACCGGACGAGCTaGGATTCGTGTTCTCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: GEPGRSCRQGGSVDLFTWKNRTS*DSCSPP Trigger: AGGAGGAGAACACGAATCCCAGCTCGTCCGGTTCTT...CCAAGTGAAAAGATCCACTGAGCCACCTTGTCTGCAAGACCTCCCAGGCTCCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| CDS-3UTR CCA 90 bp | AGGTCTTGCAGACAAGGTGGCTCAGTGGATCTTTTCACTTGGGCTAGGGAAGACTCCTTGGTCGCCGAGTaGGAAGAACCGGACGAGCTG | + |
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Preference number: 4 (lower is better) Translates to: RSCRQGGSVDLFTWAREDSLVAE*EEPDEL Trigger: CAGCTCGTCCGGTTCTTCCCACTCGGCGACCAAGGA...GTCTTCCCTAGCCCAAGTGAAAAGATCCACTGAGCCACCTTGTCTGCAAGACCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| CDS-3UTR TCA 90 bp | CAGGTCAAACGTACAGGGATTTCACAGCAAGGCAGGATCACATTTAGCTGCCCCGCTGTTCTTGTTGACTaGGGAGTAGAAGCCGGCGGG | + |
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Preference number: 4 (lower is better) Translates to: QVKRTGISQQGRITFSCPAVLVD*GVEAGG Trigger: CCCGCCGGCTTCTACTCCTCAGTCAACAAGAACAGC...GGGGCAGCTAAATGTGATCCTGCCTTGCTGTGAAATCCCTGTACGTTTGACCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| CDS-3UTR GCA 90 bp | GGATTTGGACTTTGCACACCTAACACCAGGTCAAACGTACAGGGATTTCACAGCCAGCGCCCCTCTCCTTaGGCGAAGGCGAGCAGAAGT | + |
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Preference number: 4 (lower is better) Translates to: GFGLCTPNTRSNVQGFHSQRPSP*AKASRS Trigger: ACTTCTGCTCGCCTTCGCGCAAGGAGAGGGGCGCTG...GCTGTGAAATCCCTGTACGTTTGACCTGGTGTTAGGTGTGCAAAGTCCAAATCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| 3UTR CAA 72 bp | GGCTCAGTGGATCTTTTCACTTGGGCTAGGGAAGACTaGAGTTCAAGGATTGTTCGGCTCTGGCGCCCACTG | + |
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Preference number: 4 (lower is better) Translates to: GSVDLFTWARED*SSRIVRLWRPL Trigger: CAGTGGGCGCCAGAGCCGAACAATCCTTGAACTCAAGTCTTCCCTAGCCCAAGTGAAAAGATCCACTGAGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| CDS-3UTR GCA 90 bp | GGACTTTGCACACCTAACACCAGGTCAAACGTACAGGGATTTCACAGCAAGGCAGATAGAGGTTGGAGGTaGAGCTCCCTCGTTCGCCGA | + |
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Preference number: 4 (lower is better) Translates to: GLCTPNTRSNVQGFHSKADRGWR*SSLVRR Trigger: TCGGCGAACGAGGGAGCTGCACCTCCAACCTCTATC...TGCCTTGCTGTGAAATCCCTGTACGTTTGACCTGGTGTTAGGTGTGCAAAGTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| CDS-3UTR TCA 90 bp | AGGTCTTGCAGACAAGGTGGCTCAGTGGATCTTTTCACTTGGGCTAGGGAAGACCAGCAGTGGATTTCCTaGAAAATACTGCAGCCGGTC | + |
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Preference number: 4 (lower is better) Translates to: RSCRQGGSVDLFTWAREDQQWIS*KILQPV Trigger: GACCGGCTGCAGTATTTTTCAGGAAATCCACTGCTG...GTCTTCCCTAGCCCAAGTGAAAAGATCCACTGAGCCACCTTGTCTGCAAGACCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| CDS-3UTR TCA 90 bp | GGATTTGGACTTTGCACACCTAACACCAGGTCAAACGTACAGGGATTTCACAGCAGACGCTGTTCTTGTTaGCTGAGGAGTAGAAGCCGG | + |
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Preference number: 4 (lower is better) Translates to: GFGLCTPNTRSNVQGFHSRRCSC*LRSRSR Trigger: CCGGCTTCTACTCCTCAGTCAACAAGAACAGCGTCT...GCTGTGAAATCCCTGTACGTTTGACCTGGTGTTAGGTGTGCAAAGTCCAAATCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| CDS-3UTR CCA 90 bp | GGACTTTGCACACCTAACACCAGGTCAAACGTACAGGGATTTCACAGCAAGGCACGTAGTAAGTGCAACTaGGCAGATAGAGGTTGGAGG | + |
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Preference number: 4 (lower is better) Translates to: GLCTPNTRSNVQGFHSKARSKCN*ADRGWR Trigger: CCTCCAACCTCTATCTGCCCAGTTGCACTTACTACG...TGCCTTGCTGTGAAATCCCTGTACGTTTGACCTGGTGTTAGGTGTGCAAAGTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| CDS-3UTR CCA 90 bp | GGATTTGGACTTTGCACACCTAACACCAGGTCAAACGTACAGGGATTTCACAGCAAGCGGTCGAAAGCTTaGGGCAAGACGCTGTTCTTG | + |
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Preference number: 4 (lower is better) Translates to: GFGLCTPNTRSNVQGFHSKRSKA*GKTLFL Trigger: CAAGAACAGCGTCTTGCCCCAAGCTTTCGACCGCTT...GCTGTGAAATCCCTGTACGTTTGACCTGGTGTTAGGTGTGCAAAGTCCAAATCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| CDS CCA 90 bp | GGGGCGTTGGGGGCGGCTCCCTTGGCCGGCTCCTTGGTCGCCGAGTaGGAAGAACCGGACGAGCTGGGATTCGTGTTCTCCTCCTCGGCC | + |
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Preference number: 5 (lower is better) Translates to: GALGAAPLAGSLVAE*EEPDELGFVFSSSA Trigger: GGCCGAGGAGGAGAACACGAATCCCAGCTCGTCCGGTTCTTCCCACTCGGCGACCAAGGAGCCGGCCAAGGGAGCCGCCCCCAACGCCCC 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| CDS CCA 90 bp | CCTTGGCCGGCTCCTTGGTCGCCGAGTGGGAAGAACCGGACGAGCTaGGATTCGTGTTCTCCTCCTCGGCCTCGGCCTCAGCACCGGCCT | + |
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Preference number: 5 (lower is better) Translates to: PWPAPWSPSGKNRTS*DSCSPPRPRPQHRP Trigger: AGGCCGGTGCTGAGGCCGAGGCCGAGGAGGAGAACACGAATCCCAGCTCGTCCGGTTCTTCCCACTCGGCGACCAAGGAGCCGGCCAAGG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| CDS-3UTR CAA 90 bp | AGACTTGAGTTCAAGGATTGTTCGGCTCTGGCGCCCACTGTGACCGCCCCTCCTGAAGCGGTCGAAAGCTaGGGGCAAGACGCTGTTCTT | + |
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Preference number: 5 (lower is better) Translates to: RLEFKDCSALAPTVTAPPEAVES*GQDAVL Trigger: AAGAACAGCGTCTTGCCCCAAGCTTTCGACCGCTTC...AGGAGGGGCGGTCACAGTGGGCGCCAGAGCCGAACAATCCTTGAACTCAAGTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| CDS-3UTR CAA 90 bp | GGACTTTGCACACCTAACACCAGGTCAAACGTACAGGGATTTCACAGCAAGGCATCAGCGCCCCTCTCCTaGCGCGAAGGCGAGCAGAAG | + |
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Preference number: 5 (lower is better) Translates to: GLCTPNTRSNVQGFHSKASAPLS*REGEQK Trigger: CTTCTGCTCGCCTTCGCGCAAGGAGAGGGGCGCTGA...TGCCTTGCTGTGAAATCCCTGTACGTTTGACCTGGTGTTAGGTGTGCAAAGTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| CDS-3UTR CAA 90 bp | GGCGCCACGGGGTCCACTAACCACGGGTCAGACACTTCCCTCACCTCCTTTTCCTGCAGCCGCTTCTCTTaGTTGATGTACACGTTGAAG | + |
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Preference number: 5 (lower is better) Translates to: GATGSTNHGSDTSLTSFSCSRFS*LMYTLK Trigger: CTTCAACGTGTACATCAACAAAGAGAAGCGGCTGCA...GGAAAAGGAGGTGAGGGAAGTGTCTGACCCGTGGTTAGTGGACCCCGTGGCGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| CDS-3UTR CAA 90 bp | GGATTTGGACTTTGCACACCTAACACCAGGTCAAACGTACAGGGATTTCACAGCGAAGGCGAGCAGAAGTaGCCCAGGTTGACCGAGTTA | + |
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Preference number: 5 (lower is better) Translates to: GFGLCTPNTRSNVQGFHSEGEQK*PRLTEL Trigger: TAACTCGGTCAACCTGGGCAACTTCTGCTCGCCTTC...GCTGTGAAATCCCTGTACGTTTGACCTGGTGTTAGGTGTGCAAAGTCCAAATCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| CDS-3UTR CAA 90 bp | GGGGAGCCTGGGAGGTCTTGCAGACAAGGTGGCTCAGTGGATCTTTTCACTTGGAAACCAAATTTTCACTaGTCGGTCTGTCAGGTTCAG | + |
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Preference number: 5 (lower is better) Translates to: GEPGRSCRQGGSVDLFTWKPNFH*SVCQVQ Trigger: CTGAACCTGACAGACCGACAAGTGAAAATTTGGTTT...CCAAGTGAAAAGATCCACTGAGCCACCTTGTCTGCAAGACCTCCCAGGCTCCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| CDS CCA 72 bp | GGGGCGGCTCCCTTGGCCGGCTCCTTGGTCGCCGAGTaGGAAGAACCGGACGAGCTGGGATTCGTGTTCTCC | + |
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Preference number: 6 (lower is better) Translates to: GAAPLAGSLVAE*EEPDELGFVFS Trigger: GGAGAACACGAATCCCAGCTCGTCCGGTTCTTCCCACTCGGCGACCAAGGAGCCGGCCAAGGGAGCCGCCCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| CDS CCA 72 bp | GCTCCTTGGTCGCCGAGTGGGAAGAACCGGACGAGCTaGGATTCGTGTTCTCCTCCTCGGCCTCGGCCTCAG | + |
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Preference number: 6 (lower is better) Translates to: APWSPSGKNRTS*DSCSPPRPRPQ Trigger: CTGAGGCCGAGGCCGAGGAGGAGAACACGAATCCCAGCTCGTCCGGTTCTTCCCACTCGGCGACCAAGGAGC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| CDS CAA 72 bp | CAGCTCCCTCGTTCGCCGAAGTCAGCGCCCCTCTCCTaGCGCGAAGGCGAGCAGAAGTTGCCCAGGTTGACC | + |
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Preference number: 6 (lower is better) Translates to: QLPRSPKSAPLS*REGEQKLPRLT Trigger: GGTCAACCTGGGCAACTTCTGCTCGCCTTCGCGCAAGGAGAGGGGCGCTGACTTCGGCGAACGAGGGAGCTG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| CDS TCA 72 bp | AGCGGTCGAAAGCTTGGGGCAAGACGCTGTTCTTGTTaGCTGAGGAGTAGAAGCCGGCGGGGGCCGCGTGCG | + |
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Preference number: 6 (lower is better) Translates to: SGRKLGARRCSC*LRSRSRRGPRA Trigger: CGCACGCGGCCCCCGCCGGCTTCTACTCCTCAGTCAACAAGAACAGCGTCTTGCCCCAAGCTTTCGACCGCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| CDS TCA 72 bp | GCCGTAGGAGACCTCCCGGACCGGGGGCACTTGGGCTaGGTAGGGATAAGAAATCTGACGAGAGGGAGCCTG | + |
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Preference number: 6 (lower is better) Translates to: AVGDLPDRGHLG*VGIRNLTRGSL Trigger: CAGGCTCCCTCTCGTCAGATTTCTTATCCCTACTCAGCCCAAGTGCCCCCGGTCCGGGAGGTCTCCTACGGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| CDS CAA 90 bp | TTGGAGGTGCAGCTCCCTCGTTCGCCGAAGTCAGCGCCCCTCTCCTaGCGCGAAGGCGAGCAGAAGTTGCCCAGGTTGACCGAGTTAAAC | + |
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Preference number: 6 (lower is better) Translates to: LEVQLPRSPKSAPLS*REGEQKLPRLTELN Trigger: GTTTAACTCGGTCAACCTGGGCAACTTCTGCTCGCCTTCGCGCAAGGAGAGGGGCGCTGACTTCGGCGAACGAGGGAGCTGCACCTCCAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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| CDS GCA 72 bp | CGTAGTAAGTGCAACTGGGCAGATAGAGGTTGGAGGTaGAGCTCCCTCGTTCGCCGAAGTCAGCGCCCCTCT | + |
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Preference number: 6 (lower is better) Translates to: RSKCNWADRGWR*SSLVRRSQRPS Trigger: AGAGGGGCGCTGACTTCGGCGAACGAGGGAGCTGCACCTCCAACCTCTATCTGCCCAGTTGCACTTACTACG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001701.4 |
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