Pregenerated sensors for HOXC10 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022484Ensembl transcript IDs: ENSMUST00000001699.8
Found 90 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACTTTGCATGGAGAACAGAATGCTGTATGTGAGTGCATGGGTGACTaGAGAGTTGACACACACACCGGCCACACTACCACCCCATCTATG | + |
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Preference number: 1 (lower is better) Translates to: TLHGEQNAVCECMGD*RVDTHTGHTTTPSM Trigger: CATAGATGGGGTGGTAGTGTGGCCGGTGTGTGTGTCAACTCTTCAGTCACCCATGCACTCACATACAGCATTCTGTTCTCCATGCAAAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| 3UTR-3UTR GCA 90 bp | GGAAGCATCCTCGAAGCACGAACCATAGGTCCCTTGGAAGAAGAGTCTGAGGTCTTTTTGCAGGCGAGTTaGATTTATACTCAGGGAGGG | + |
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Preference number: 2 (lower is better) Translates to: GSILEARTIGPLEEESEVFLQAS*IYTQGG Trigger: CCCTCCCTGAGTATAAATGCAACTCGCCTGCAAAAA...GACCTCAGACTCTTCTTCCAAGGGACCTATGGTTCGTGCTTCGAGGATGCTTCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| 3UTR CAA 90 bp | GGAGCAATGCTAACTGTGCTCTACAAGGTTACAGACCCTCTCTGTTaGATTATCCCCCTTTCTTTCCCCTCTAATCGGGTGCATTTGACC | + |
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Preference number: 2 (lower is better) Translates to: GAMLTVLYKVTDPLC*IIPLSFPSNRVHLT Trigger: GGTCAAATGCACCCGATTAGAGGGGAAAGAAAGGGGGATAATCAAACAGAGAGGGTCTGTAACCTTGTAGAGCACAGTTAGCATTGCTCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| 3UTR-3UTR TCA 90 bp | AGCAAGGAAGGAGCAATGCTAACTGTGCTCTACAAGGTTACAGACCCTCTCTGTCTAATCGGGTGCATTTaGCCTCAACTTTGCATGGAG | + |
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Preference number: 2 (lower is better) Translates to: SKEGAMLTVLYKVTDPLCLIGCI*PQLCME Trigger: CTCCATGCAAAGTTGAGGTCAAATGCACCCGATTAG...ACAGAGAGGGTCTGTAACCTTGTAGAGCACAGTTAGCATTGCTCCTTCCTTGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| 3UTR-3UTR CCA 90 bp | AGCAAGGAAGGAGCAATGCTAACTGTGCTCTACAAGGTTACAGACCCTCTCTGTGACCTCAACTTTGCATaGAGAACAGAATGCTGTATG | + |
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Preference number: 2 (lower is better) Translates to: SKEGAMLTVLYKVTDPLCDLNFA*RTECCM Trigger: CATACAGCATTCTGTTCTCCATGCAAAGTTGAGGTC...ACAGAGAGGGTCTGTAACCTTGTAGAGCACAGTTAGCATTGCTCCTTCCTTGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| 3UTR-3UTR CCA 90 bp | ACAACATACAGAATATCTTTAAATAACACAACTCCCAGACAGGAGCAGGACAACCTGTATGTGAGTGCATaGGTGACTGAAGAGTTGACA | + |
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Preference number: 2 (lower is better) Translates to: TTYRISLNNTTPRQEQDNLYVSA*VTEELT Trigger: TGTCAACTCTTCAGTCACCCATGCACTCACATACAG...GTTGTCCTGCTCCTGTCTGGGAGTTGTGTTATTTAAAGATATTCTGTATGTTGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| 3UTR-3UTR CCA 90 bp | ACAACATACAGAATATCTTTAAATAACACAACTCCCAGACAGGAGCAGGACAACAGAGATATAGTGTGTTaGGAAGGGTGGGAGAAAAGC | + |
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Preference number: 2 (lower is better) Translates to: TTYRISLNNTTPRQEQDNRDIVC*EGWEKS Trigger: GCTTTTCTCCCACCCTTCCCAACACACTATATCTCT...GTTGTCCTGCTCCTGTCTGGGAGTTGTGTTATTTAAAGATATTCTGTATGTTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| 3UTR TCA 72 bp | GGAGAACAGAATGCTGTATGTGAGTGCATGGGTGACTaGAGAGTTGACACACACACCGGCCACACTACCACC | + |
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Preference number: 3 (lower is better) Translates to: GEQNAVCECMGD*RVDTHTGHTTT Trigger: GGTGGTAGTGTGGCCGGTGTGTGTGTCAACTCTTCAGTCACCCATGCACTCACATACAGCATTCTGTTCTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| 3UTR CCA 72 bp | CTTTGCATGGAGAACAGAATGCTGTATGTGAGTGCATaGGTGACTGAAGAGTTGACACACACACCGGCCACA | + |
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Preference number: 3 (lower is better) Translates to: LCMENRMLYVSA*VTEELTHTPAT Trigger: TGTGGCCGGTGTGTGTGTCAACTCTTCAGTCACCCATGCACTCACATACAGCATTCTGTTCTCCATGCAAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| 3UTR-3UTR CAA 90 bp | ACAACATACAGAATATCTTTAAATAACACAACTCCCAGACAGGAGCAGGACAACCGAACCATAGGTCCCTaGGAAGAAGAGTCTGAGGTC | + |
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Preference number: 3 (lower is better) Translates to: TTYRISLNNTTPRQEQDNRTIGP*EEESEV Trigger: GACCTCAGACTCTTCTTCCAAGGGACCTATGGTTCG...GTTGTCCTGCTCCTGTCTGGGAGTTGTGTTATTTAAAGATATTCTGTATGTTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| 3UTR TCA 72 bp | TTATCCCCCTTTCTTTCCCCTCTAATCGGGTGCATTTaGCCTCAACTTTGCATGGAGAACAGAATGCTGTAT | + |
|
Preference number: 3 (lower is better) Translates to: LSPFLSPLIGCI*PQLCMENRMLY Trigger: ATACAGCATTCTGTTCTCCATGCAAAGTTGAGGTCAAATGCACCCGATTAGAGGGGAAAGAAAGGGGGATAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR CCA 90 bp | AGCAAGGAAGGAGCAATGCTAACTGTGCTCTACAAGGTTACAGACCCTCTCTGTCGCTCTCCGAGGGGCTaGCTTTTGGGCCCGCCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: SKEGAMLTVLYKVTDPLCRSPRG*LLGPPG Trigger: GCCTGGCGGGCCCAAAAGCCAGCCCCTCGGAGAGCG...ACAGAGAGGGTCTGTAACCTTGTAGAGCACAGTTAGCATTGCTCCTTCCTTGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR CCA 90 bp | AGCAAGGAAGGAGCAATGCTAACTGTGCTCTACAAGGTTACAGACCCTCTCTGTCTCCCTCGTCCCTCTTaGAGAGAGAGGGCGCGAGCC | + |
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Preference number: 4 (lower is better) Translates to: SKEGAMLTVLYKVTDPLCLPRPS*RERARA Trigger: GGCTCGCGCCCTCTCTCTCCAAGAGGGACGAGGGAG...ACAGAGAGGGTCTGTAACCTTGTAGAGCACAGTTAGCATTGCTCCTTCCTTGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR CCA 90 bp | CTTTGCATGGAGAACAGAATGCTGTATGTGAGTGCATGGGTGACTGAAGAGTTGGGCGGTAGGCGGCTTTaGGGTCGCCCCAGGAGTCCA | + |
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Preference number: 4 (lower is better) Translates to: LCMENRMLYVSAWVTEELGGRRL*GRPRSP Trigger: TGGACTCCTGGGGCGACCCCAAAGCCGCCTACCGCC...CAACTCTTCAGTCACCCATGCACTCACATACAGCATTCTGTTCTCCATGCAAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR CCA 90 bp | AGCAAGGAAGGAGCAATGCTAACTGTGCTCTACAAGGTTACAGACCCTCTCTGTCGAGGGGCTGGCTTTTaGGCCCGCCAGGCTTTGCTC | + |
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Preference number: 4 (lower is better) Translates to: SKEGAMLTVLYKVTDPLCRGAGF*ARQALL Trigger: GAGCAAAGCCTGGCGGGCCCAAAAGCCAGCCCCTCG...ACAGAGAGGGTCTGTAACCTTGTAGAGCACAGTTAGCATTGCTCCTTCCTTGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR GCA 90 bp | ATGCTGTATGTGAGTGCATGGGTGACTGAAGAGTTGACACACACACCGGCCACAGTGGGAGTAGAGAGCTaGCTCAGGGCCACTTTTCGC | + |
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Preference number: 4 (lower is better) Translates to: MLYVSAWVTEELTHTPATVGVES*LRATFR Trigger: GCGAAAAGTGGCCCTGAGGCAGCTCTCTACTCCCAC...TGTGGCCGGTGTGTGTGTCAACTCTTCAGTCACCCATGCACTCACATACAGCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR CCA 90 bp | AGACAGAGAGAGGGAGGGTTTAGTCTAGACACTGGGTACTATGACAAACACACAGGGCTTCGAACTCGTTaGCCCCAGCACAGTGGGGCG | + |
|
Preference number: 4 (lower is better) Translates to: RQREGGFSLDTGYYDKHTGLRTR*PQHSGA Trigger: CGCCCCACTGTGCTGGGGCCAACGAGTTCGAAGCCC...TGTGTGTTTGTCATAGTACCCAGTGTCTAGACTAAACCCTCCCTCTCTCTGTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR TCA 90 bp | ATGCTGTATGTGAGTGCATGGGTGACTGAAGAGTTGACACACACACCGGCCACAACTTTGCCCCCAAGCTaGGGCGATTCCAGATGTTCG | + |
|
Preference number: 4 (lower is better) Translates to: MLYVSAWVTEELTHTPATTLPPS*GDSRCS Trigger: CGAACATCTGGAATCGCCTCAGCTTGGGGGCAAAGT...TGTGGCCGGTGTGTGTGTCAACTCTTCAGTCACCCATGCACTCACATACAGCAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR GCA 90 bp | CTTTGCATGGAGAACAGAATGCTGTATGTGAGTGCATGGGTGACTGAAGAGTTGGGGCTAGGTTTGGGCTaGCTCCCTCGTCCCTCTTGG | + |
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Preference number: 4 (lower is better) Translates to: LCMENRMLYVSAWVTEELGLGLG*LPRPSW Trigger: CCAAGAGGGACGAGGGAGGCAGCCCAAACCTAGCCC...CAACTCTTCAGTCACCCATGCACTCACATACAGCATTCTGTTCTCCATGCAAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR CCA 90 bp | AGACAGAGAGAGGGAGGGTTTAGTCTAGACACTGGGTACTATGACAAACACACATTGGCCCCAGCACAGTaGGGCGTTTTGTCCAGCGCG | + |
|
Preference number: 4 (lower is better) Translates to: RQREGGFSLDTGYYDKHTLAPAQ*GVLSSA Trigger: CGCGCTGGACAAAACGCCCCACTGTGCTGGGGCCAA...TGTGTGTTTGTCATAGTACCCAGTGTCTAGACTAAACCCTCCCTCTCTCTGTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR TCA 90 bp | AGACAGAGAGAGGGAGGGTTTAGTCTAGACACTGGGTACTATGACAAACACACAAGGACGGGTAGGTGTTaGGGGCTAGGTTTGGGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: RQREGGFSLDTGYYDKHTRTGRC*GLGLGC Trigger: GCAGCCCAAACCTAGCCCTCAACACCTACCCGTCCT...TGTGTGTTTGTCATAGTACCCAGTGTCTAGACTAAACCCTCCCTCTCTCTGTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR GCA 90 bp | AGCAAGGAAGGAGCAATGCTAACTGTGCTCTACAAGGTTACAGACCCTCTCTGTAGGAGGACAGAGGCCTaGCAACAGGTTGTTCCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: SKEGAMLTVLYKVTDPLCRRTEA*QQVVPG Trigger: GCCTGGAACAACCTGTTGGCAGGCCTCTGTCCTCCT...ACAGAGAGGGTCTGTAACCTTGTAGAGCACAGTTAGCATTGCTCCTTCCTTGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR GCA 90 bp | AGCAAGGAAGGAGCAATGCTAACTGTGCTCTACAAGGTTACAGACCCTCTCTGTGGTACAGGTACCTCGTaGTCCCCAAGGCAAGACTCC | + |
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Preference number: 4 (lower is better) Translates to: SKEGAMLTVLYKVTDPLCGTGTS*SPRQDS Trigger: GGAGTCTTGCCTTGGGGAGCACGAGGTACCTGTACC...ACAGAGAGGGTCTGTAACCTTGTAGAGCACAGTTAGCATTGCTCCTTCCTTGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR GCA 90 bp | AGCAAGGAAGGAGCAATGCTAACTGTGCTCTACAAGGTTACAGACCCTCTCTGTGTCTGGACTGGAGTCTaGGGTCTTGGCCCGTTCCTT | + |
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Preference number: 4 (lower is better) Translates to: SKEGAMLTVLYKVTDPLCVWTGV*GLGPFL Trigger: AAGGAACGGGCCAAGACCGCAGACTCCAGTCCAGAC...ACAGAGAGGGTCTGTAACCTTGTAGAGCACAGTTAGCATTGCTCCTTCCTTGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR CCA 90 bp | AGACAGAGAGAGGGAGGGTTTAGTCTAGACACTGGGTACTATGACAAACACACACGGAGTAGCTCGGGCTaGCTCGGTAGTAGCTGGGTA | + |
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Preference number: 4 (lower is better) Translates to: RQREGGFSLDTGYYDKHTRSSSG*LGSSWV Trigger: TACCCAGCTACTACCGAGCCAGCCCGAGCTACTCCG...TGTGTGTTTGTCATAGTACCCAGTGTCTAGACTAAACCCTCCCTCTCTCTGTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR CCA 90 bp | GAAGGAGCAATGCTAACTGTGCTCTACAAGGTTACAGACCCTCTCTGTTTGATTCCGAGGTGTCTGGACTaGAGTCTGCGGTCTTGGCCC | + |
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Preference number: 4 (lower is better) Translates to: EGAMLTVLYKVTDPLCLIPRCLD*SLRSWP Trigger: GGGCCAAGACCGCAGACTCCAGTCCAGACACCTCGG...AATCAAACAGAGAGGGTCTGTAACCTTGTAGAGCACAGTTAGCATTGCTCCTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR GCA 90 bp | GGAAGCATCCTCGAAGCACGAACCATAGGTCCCTTGGAAGAAGAGTCTGAGGTCTCTCTGCACTGTACATaGAGCAGACATTCTCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: GSILEARTIGPLEEESEVSLHCT*SRHSPP Trigger: AGGAGGAGAATGTCTGCTGCATGTACAGTGCAGAGA...GACCTCAGACTCTTCTTCCAAGGGACCTATGGTTCGTGCTTCGAGGATGCTTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR GCA 90 bp | CTTTGCATGGAGAACAGAATGCTGTATGTGAGTGCATGGGTGACTGAAGAGTTGTTGAGACTGGCCCGCTaGTCAAAGGGGGCTTCGAAC | + |
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Preference number: 4 (lower is better) Translates to: LCMENRMLYVSAWVTEELLRLAR*SKGASN Trigger: GTTCGAAGCCCCCTTTGAGCAGCGGGCCAGTCTCAA...CAACTCTTCAGTCACCCATGCACTCACATACAGCATTCTGTTCTCCATGCAAAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| 3UTR CAA 72 bp | AGAATGCTGTATGTGAGTGCATGGGTGACTGAAGAGTaGACACACACACCGGCCACACTACCACCCCATCTA | + |
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Preference number: 4 (lower is better) Translates to: RMLYVSAWVTEE*THTPATLPPHL Trigger: TAGATGGGGTGGTAGTGTGGCCGGTGTGTGTGTCAACTCTTCAGTCACCCATGCACTCACATACAGCATTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR TCA 90 bp | AGCAAGGAAGGAGCAATGCTAACTGTGCTCTACAAGGTTACAGACCCTCTCTGTTCATCACCCCGCAGTTaGAGTCACTCCCAGATTGCA | + |
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Preference number: 4 (lower is better) Translates to: SKEGAMLTVLYKVTDPLCSSPRS*SHSQIA Trigger: TGCAATCTGGGAGTGACTTCAACTGCGGGGTGATGA...ACAGAGAGGGTCTGTAACCTTGTAGAGCACAGTTAGCATTGCTCCTTCCTTGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR TCA 90 bp | ACAACATACAGAATATCTTTAAATAACACAACTCCCAGACAGGAGCAGGACAACGTTCGGTGCGCGGGTTaGGACTGGCCCGCTGCTCAA | + |
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Preference number: 4 (lower is better) Translates to: TTYRISLNNTTPRQEQDNVRCAG*DWPAAQ Trigger: TTGAGCAGCGGGCCAGTCTCAACCCGCGCACCGAAC...GTTGTCCTGCTCCTGTCTGGGAGTTGTGTTATTTAAAGATATTCTGTATGTTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR GCA 90 bp | AGACAGAGAGAGGGAGGGTTTAGTCTAGACACTGGGTACTATGACAAACACACAGGGCCCGCCAGGCTTTaGTCTGTCTTGATCTCATTG | + |
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Preference number: 4 (lower is better) Translates to: RQREGGFSLDTGYYDKHTGPARL*SVLISL Trigger: CAATGAGATCAAGACAGAGCAAAGCCTGGCGGGCCC...TGTGTGTTTGTCATAGTACCCAGTGTCTAGACTAAACCCTCCCTCTCTCTGTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR TCA 90 bp | GAAGGAGCAATGCTAACTGTGCTCTACAAGGTTACAGACCCTCTCTGTTTGATTGGCTTTGCTCTGTCTTaGTCTCATTGGGACTGGGGG | + |
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Preference number: 4 (lower is better) Translates to: EGAMLTVLYKVTDPLCLIGFALS*SHWDWG Trigger: CCCCCAGTCCCAATGAGATCAAGACAGAGCAAAGCC...AATCAAACAGAGAGGGTCTGTAACCTTGTAGAGCACAGTTAGCATTGCTCCTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR GCA 90 bp | GGAAGCATCCTCGAAGCACGAACCATAGGTCCCTTGGAAGAAGAGTCTGAGGTCTTGCATATACATTCCTaGGTTACGGTTATAGCGCTC | + |
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Preference number: 4 (lower is better) Translates to: GSILEARTIGPLEEESEVLHIHS*VTVIAL Trigger: GAGCGCTATAACCGTAACGCAGGAATGTATATGCAA...GACCTCAGACTCTTCTTCCAAGGGACCTATGGTTCGTGCTTCGAGGATGCTTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR GCA 90 bp | CTTTGCATGGAGAACAGAATGCTGTATGTGAGTGCATGGGTGACTGAAGAGTTGTTTCGCCCGCTTCTCTaGACTGTACATGCAGCAGAC | + |
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Preference number: 4 (lower is better) Translates to: LCMENRMLYVSAWVTEELFRPLL*TVHAAD Trigger: GTCTGCTGCATGTACAGTGCAGAGAAGCGGGCGAAA...CAACTCTTCAGTCACCCATGCACTCACATACAGCATTCTGTTCTCCATGCAAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR CCA 90 bp | CTTTGCATGGAGAACAGAATGCTGTATGTGAGTGCATGGGTGACTGAAGAGTTGCTCCTTGACACTAGGTaGGTAGGAACAGGAGGACAG | + |
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Preference number: 4 (lower is better) Translates to: LCMENRMLYVSAWVTEELLLDTR*VGTGGQ Trigger: CTGTCCTCCTGTTCCTACCCACCTAGTGTCAAGGAG...CAACTCTTCAGTCACCCATGCACTCACATACAGCATTCTGTTCTCCATGCAAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR GCA 90 bp | CTTTGCATGGAGAACAGAATGCTGTATGTGAGTGCATGGGTGACTGAAGAGTTGCAGGAAAACTCACTTTaGCCCCAAGCTGAGGCGATT | + |
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Preference number: 4 (lower is better) Translates to: LCMENRMLYVSAWVTEELQENSL*PQAEAI Trigger: AATCGCCTCAGCTTGGGGGCAAAGTGAGTTTTCCTG...CAACTCTTCAGTCACCCATGCACTCACATACAGCATTCTGTTCTCCATGCAAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR GCA 90 bp | AGCAAGGAAGGAGCAATGCTAACTGTGCTCTACAAGGTTACAGACCCTCTCTGTCTTCCTTCCGCTCTTTaGTGTCAGCCAATTTCCTGT | + |
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Preference number: 4 (lower is better) Translates to: SKEGAMLTVLYKVTDPLCLPSAL*CQPISC Trigger: ACAGGAAATTGGCTGACAGCAAAGAGCGGAAGGAAG...ACAGAGAGGGTCTGTAACCTTGTAGAGCACAGTTAGCATTGCTCCTTCCTTGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR CCA 90 bp | GAAGGAGCAATGCTAACTGTGCTCTACAAGGTTACAGACCCTCTCTGTTTGATTTCTGGCTGTCGGACTTaGGGGTCTCAGGAAAACTCA | + |
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Preference number: 4 (lower is better) Translates to: EGAMLTVLYKVTDPLCLISGCRT*GSQENS Trigger: TGAGTTTTCCTGAGACCCCCAAGTCCGACAGCCAGA...AATCAAACAGAGAGGGTCTGTAACCTTGTAGAGCACAGTTAGCATTGCTCCTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| 3UTR CAA 72 bp | CTAACTGTGCTCTACAAGGTTACAGACCCTCTCTGTTaGATTATCCCCCTTTCTTTCCCCTCTAATCGGGTG | + |
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Preference number: 4 (lower is better) Translates to: LTVLYKVTDPLC*IIPLSFPSNRV Trigger: CACCCGATTAGAGGGGAAAGAAAGGGGGATAATCAAACAGAGAGGGTCTGTAACCTTGTAGAGCACAGTTAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR CCA 90 bp | ACAACATACAGAATATCTTTAAATAACACAACTCCCAGACAGGAGCAGGACAACTGGCTCGGTAGTAGCTaGGTACAGGTACCTCGTGCT | + |
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Preference number: 4 (lower is better) Translates to: TTYRISLNNTTPRQEQDNWLGSS*VQVPRA Trigger: AGCACGAGGTACCTGTACCCAGCTACTACCGAGCCA...GTTGTCCTGCTCCTGTCTGGGAGTTGTGTTATTTAAAGATATTCTGTATGTTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| 3UTR CAA 72 bp | TCTTTCCCCTCTAATCGGGTGCATTTGACCTCAACTTaGCATGGAGAACAGAATGCTGTATGTGAGTGCATG | + |
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Preference number: 4 (lower is better) Translates to: SFPSNRVHLTST*HGEQNAVCECM Trigger: CATGCACTCACATACAGCATTCTGTTCTCCATGCAAAGTTGAGGTCAAATGCACCCGATTAGAGGGGAAAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR GCA 90 bp | AGCAAGGAAGGAGCAATGCTAACTGTGCTCTACAAGGTTACAGACCCTCTCTGTAAGTCACTCCCAGATTaGATATACATTCCTGCGTTA | + |
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Preference number: 4 (lower is better) Translates to: SKEGAMLTVLYKVTDPLCKSLPD*IYIPAL Trigger: TAACGCAGGAATGTATATGCAATCTGGGAGTGACTT...ACAGAGAGGGTCTGTAACCTTGTAGAGCACAGTTAGCATTGCTCCTTCCTTGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| 3UTR CAA 72 bp | ATTATCCCCCTTTCTTTCCCCTCTAATCGGGTGCATTaGACCTCAACTTTGCATGGAGAACAGAATGCTGTA | + |
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Preference number: 4 (lower is better) Translates to: IIPLSFPSNRVH*TSTLHGEQNAV Trigger: TACAGCATTCTGTTCTCCATGCAAAGTTGAGGTCAAATGCACCCGATTAGAGGGGAAAGAAAGGGGGATAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS CCA 90 bp | AGGACAGAGGCCTGCCAACAGGTTGTTCCAGGCGGTAGGCGGCTTTaGGGTCGCCCCAGGAGTCCAGCTGCGAGAGGTAGGACGGGTAGG | + |
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Preference number: 5 (lower is better) Translates to: RTEACQQVVPGGRRL*GRPRSPAARGRTGR Trigger: CCTACCCGTCCTACCTCTCGCAGCTGGACTCCTGGGGCGACCCCAAAGCCGCCTACCGCCTGGAACAACCTGTTGGCAGGCCTCTGTCCT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS TCA 90 bp | GGTCGCCCCAGGAGTCCAGCTGCGAGAGGTAGGACGGGTAGGTGTTaGGGGCTAGGTTTGGGCTGCCTCCCTCGTCCCTCTTGGAGAGAG | + |
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Preference number: 5 (lower is better) Translates to: GRPRSPAARGRTGRC*GLGLGCLPRPSWRE Trigger: CTCTCTCCAAGAGGGACGAGGGAGGCAGCCCAAACCTAGCCCTCAACACCTACCCGTCCTACCTCTCGCAGCTGGACTCCTGGGGCGACC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS CCA 90 bp | GCGTTTTGTCCAGCGCGGAGTAGCTCGGGCTGGCTCGGTAGTAGCTaGGTACAGGTACCTCGTGCTCCCCAAGGCAAGACTCCGGCAGGG | + |
|
Preference number: 5 (lower is better) Translates to: AFCPARSSSGWLGSS*VQVPRAPQGKTPAG Trigger: CCCTGCCGGAGTCTTGCCTTGGGGAGCACGAGGTACCTGTACCCAGCTACTACCGAGCCAGCCCGAGCTACTCCGCGCTGGACAAAACGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS TCA 90 bp | CTTTGCCCCCAAGCTGAGGCGATTCCAGATGTTCGGTGCGCGGGTTaGGACTGGCCCGCTGCTCAAAGGGGGCTTCGAACTCGTTGGCCC | + |
|
Preference number: 5 (lower is better) Translates to: LCPQAEAIPDVRCAG*DWPAAQRGLRTRWP Trigger: GGGCCAACGAGTTCGAAGCCCCCTTTGAGCAGCGGGCCAGTCTCAACCCGCGCACCGAACATCTGGAATCGCCTCAGCTTGGGGGCAAAG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS CCA 90 bp | TGCGGTCTTGGCCCGTTCCTTCTCGCTCTCCGAGGGGCTGGCTTTTaGGCCCGCCAGGCTTTGCTCTGTCTTGATCTCATTGGGACTGGG | + |
|
Preference number: 5 (lower is better) Translates to: CGLGPFLLALRGAGF*ARQALLCLDLIGTG Trigger: CCCAGTCCCAATGAGATCAAGACAGAGCAAAGCCTGGCGGGCCCAAAAGCCAGCCCCTCGGAGAGCGAGAAGGAACGGGCCAAGACCGCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR CAA 90 bp | ATGCTGTATGTGAGTGCATGGGTGACTGAAGAGTTGACACACACACCGGCCACAAGGCCTGCCAACAGGTaGTTCCAGGCGGTAGGCGGC | + |
|
Preference number: 5 (lower is better) Translates to: MLYVSAWVTEELTHTPATRPANR*FQAVGG Trigger: GCCGCCTACCGCCTGGAACAACCTGTTGGCAGGCCT...TGTGGCCGGTGTGTGTGTCAACTCTTCAGTCACCCATGCACTCACATACAGCAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS TCA 90 bp | TGGAGAGAGAGGGCGCGAGCCCGCAGCCCCTCATCACCCCGCAGTTaGAGTCACTCCCAGATTGCATATACATTCCTGCGTTACGGTTAT | + |
|
Preference number: 5 (lower is better) Translates to: WRERARARSPSSPRS*SHSQIAYTFLRYGY Trigger: ATAACCGTAACGCAGGAATGTATATGCAATCTGGGAGTGACTTCAACTGCGGGGTGATGAGGGGCTGCGGGCTCGCGCCCTCTCTCTCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS GCA 90 bp | CATCACCCCGCAGTTGAAGTCACTCCCAGATTGCATATACATTCCTaGGTTACGGTTATAGCGCTCTCCTCCTCCCGGCGCAGCCAAGGG | + |
|
Preference number: 5 (lower is better) Translates to: HHPAVEVTPRLHIHS*VTVIALSSSRRSQG Trigger: CCCTTGGCTGCGCCGGGAGGAGGAGAGCGCTATAACCGTAACGCAGGAATGTATATGCAATCTGGGAGTGACTTCAACTGCGGGGTGATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS GCA 90 bp | GTGGGAGTAGAGAGCTGCCTCAGGGCCACTTTTCGCCCGCTTCTCTaGACTGTACATGCAGCAGACATTCTCCTCCTTGACACTAGGTGG | + |
|
Preference number: 5 (lower is better) Translates to: VGVESCLRATFRPLL*TVHAADILLLDTRW Trigger: CCACCTAGTGTCAAGGAGGAGAATGTCTGCTGCATGTACAGTGCAGAGAAGCGGGCGAAAAGTGGCCCTGAGGCAGCTCTCTACTCCCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS GCA 90 bp | TATCTCCTCTTTAGCTTCGTTATCCGAGGTGTCTGGACTGGAGTCTaGGGTCTTGGCCCGTTCCTTCTCGCTCTCCGAGGGGCTGGCTTT | + |
|
Preference number: 5 (lower is better) Translates to: YLLFSFVIRGVWTGV*GLGPFLLALRGAGF Trigger: AAAGCCAGCCCCTCGGAGAGCGAGAAGGAACGGGCCAAGACCGCAGACTCCAGTCCAGACACCTCGGATAACGAAGCTAAAGAGGAGATA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR CAA 90 bp | AGCAAGGAAGGAGCAATGCTAACTGTGCTCTACAAGGTTACAGACCCTCTCTGTCCTCCCTCGTCCCTCTaGGAGAGAGAGGGCGCGAGC | + |
|
Preference number: 5 (lower is better) Translates to: SKEGAMLTVLYKVTDPLCPPSSL*EREGAS Trigger: GCTCGCGCCCTCTCTCTCCAAGAGGGACGAGGGAGG...ACAGAGAGGGTCTGTAACCTTGTAGAGCACAGTTAGCATTGCTCCTTCCTTGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR CAA 90 bp | AGCAAGGAAGGAGCAATGCTAACTGTGCTCTACAAGGTTACAGACCCTCTCTGTCCGAGGGGCTGGCTTTaGGGCCCGCCAGGCTTTGCT | + |
|
Preference number: 5 (lower is better) Translates to: SKEGAMLTVLYKVTDPLCPRGWL*GPPGFA Trigger: AGCAAAGCCTGGCGGGCCCAAAAGCCAGCCCCTCGG...ACAGAGAGGGTCTGTAACCTTGTAGAGCACAGTTAGCATTGCTCCTTCCTTGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS CCA 90 bp | CTCTGCACTGTACATGCAGCAGACATTCTCCTCCTTGACACTAGGTaGGTAGGAACAGGAGGACAGAGGCCTGCCAACAGGTTGTTCCAG | + |
|
Preference number: 5 (lower is better) Translates to: LCTVHAADILLLDTR*VGTGGQRPANRLFQ Trigger: CTGGAACAACCTGTTGGCAGGCCTCTGTCCTCCTGTTCCTACCCACCTAGTGTCAAGGAGGAGAATGTCTGCTGCATGTACAGTGCAGAG 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR CAA 90 bp | AGACAGAGAGAGGGAGGGTTTAGTCTAGACACTGGGTACTATGACAAACACACATGTTCGGTGCGCGGGTaGAGACTGGCCCGCTGCTCA | + |
|
Preference number: 5 (lower is better) Translates to: RQREGGFSLDTGYYDKHTCSVRG*RLARCS Trigger: TGAGCAGCGGGCCAGTCTCAACCCGCGCACCGAACA...TGTGTGTTTGTCATAGTACCCAGTGTCTAGACTAAACCCTCCCTCTCTCTGTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR CAA 90 bp | ATGCTGTATGTGAGTGCATGGGTGACTGAAGAGTTGACACACACACCGGCCACAGTCTGGCTGTCGGACTaGGGGGTCTCAGGAAAACTC | + |
|
Preference number: 5 (lower is better) Translates to: MLYVSAWVTEELTHTPATVWLSD*GVSGKL Trigger: GAGTTTTCCTGAGACCCCCAAGTCCGACAGCCAGAC...TGTGGCCGGTGTGTGTGTCAACTCTTCAGTCACCCATGCACTCACATACAGCAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS CCA 90 bp | GTTTTCTGCCTTTATCTCCTCTTTAGCTTCGTTATCCGAGGTGTCTaGACTGGAGTCTGCGGTCTTGGCCCGTTCCTTCTCGCTCTCCGA | + |
|
Preference number: 5 (lower is better) Translates to: VFCLYLLFSFVIRGV*TGVCGLGPFLLALR Trigger: TCGGAGAGCGAGAAGGAACGGGCCAAGACCGCAGACTCCAGTCCAGACACCTCGGATAACGAAGCTAAAGAGGAGATAAAGGCAGAAAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
||
| CDS-3UTR CAA 90 bp | ATGCTGTATGTGAGTGCATGGGTGACTGAAGAGTTGACACACACACCGGCCACATCTGTCTTGATCTCATaGGGACTGGGGGTCTGGCTG | + |
|
Preference number: 5 (lower is better) Translates to: MLYVSAWVTEELTHTPATSVLIS*GLGVWL Trigger: CAGCCAGACCCCCAGTCCCAATGAGATCAAGACAGA...TGTGGCCGGTGTGTGTGTCAACTCTTCAGTCACCCATGCACTCACATACAGCAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR CAA 90 bp | GGAAGCATCCTCGAAGCACGAACCATAGGTCCCTTGGAAGAAGAGTCTGAGGTCTCTTCCTTCCGCTCTTaGCTGTCAGCCAATTTCCTG | + |
|
Preference number: 5 (lower is better) Translates to: GSILEARTIGPLEEESEVSSFRS*LSANFL Trigger: CAGGAAATTGGCTGACAGCAAAGAGCGGAAGGAAGA...GACCTCAGACTCTTCTTCCAAGGGACCTATGGTTCGTGCTTCGAGGATGCTTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR CAA 90 bp | CTTTGCATGGAGAACAGAATGCTGTATGTGAGTGCATGGGTGACTGAAGAGTTGCTCATCACCCCGCAGTaGAAGTCACTCCCAGATTGC | + |
|
Preference number: 5 (lower is better) Translates to: LCMENRMLYVSAWVTEELLITPQ*KSLPDC Trigger: GCAATCTGGGAGTGACTTCAACTGCGGGGTGATGAG...CAACTCTTCAGTCACCCATGCACTCACATACAGCATTCTGTTCTCCATGCAAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR CAA 90 bp | AGACAGAGAGAGGGAGGGTTTAGTCTAGACACTGGGTACTATGACAAACACACAAGGCTTTGCTCTGTCTaGATCTCATTGGGACTGGGG | + |
|
Preference number: 5 (lower is better) Translates to: RQREGGFSLDTGYYDKHTRLCSV*ISLGLG Trigger: CCCCAGTCCCAATGAGATCAAGACAGAGCAAAGCCT...TGTGTGTTTGTCATAGTACCCAGTGTCTAGACTAAACCCTCCCTCTCTCTGTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR CAA 90 bp | GAAGGAGCAATGCTAACTGTGCTCTACAAGGTTACAGACCCTCTCTGTTTGATTTGGGCCCGCCAGGCTTaGCTCTGTCTTGATCTCATT | + |
|
Preference number: 5 (lower is better) Translates to: EGAMLTVLYKVTDPLCLIWARQA*LCLDLI Trigger: AATGAGATCAAGACAGAGCAAAGCCTGGCGGGCCCA...AATCAAACAGAGAGGGTCTGTAACCTTGTAGAGCACAGTTAGCATTGCTCCTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR CAA 90 bp | AGCAAGGAAGGAGCAATGCTAACTGTGCTCTACAAGGTTACAGACCCTCTCTGTCAGGTGAAATTAAAATaGGAGGTCAGTTCCCGGATC | + |
|
Preference number: 5 (lower is better) Translates to: SKEGAMLTVLYKVTDPLCQVKLK*EVSSRI Trigger: GATCCGGGAACTGACCTCCAATTTTAATTTCACCTG...ACAGAGAGGGTCTGTAACCTTGTAGAGCACAGTTAGCATTGCTCCTTCCTTGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR CAA 90 bp | GAAGGAGCAATGCTAACTGTGCTCTACAAGGTTACAGACCCTCTCTGTTTGATTGAAGTCACTCCCAGATaGCATATACATTCCTGCGTT | + |
|
Preference number: 5 (lower is better) Translates to: EGAMLTVLYKVTDPLCLIEVTPR*HIHSCV Trigger: AACGCAGGAATGTATATGCAATCTGGGAGTGACTTC...AATCAAACAGAGAGGGTCTGTAACCTTGTAGAGCACAGTTAGCATTGCTCCTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS-3UTR CAA 90 bp | ACAACATACAGAATATCTTTAAATAACACAACTCCCAGACAGGAGCAGGACAACGTAAGGTTAATGGTCTaGCTAATCTCCAGGCGGCGC | + |
|
Preference number: 5 (lower is better) Translates to: TTYRISLNNTTPRQEQDNVRLMV*LISRRR Trigger: GCGCCGCCTGGAGATTAGCAAGACCATTAACCTTAC...GTTGTCCTGCTCCTGTCTGGGAGTTGTGTTATTTAAAGATATTCTGTATGTTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS CCA 72 bp | GCCTGCCAACAGGTTGTTCCAGGCGGTAGGCGGCTTTaGGGTCGCCCCAGGAGTCCAGCTGCGAGAGGTAGG | + |
|
Preference number: 6 (lower is better) Translates to: ACQQVVPGGRRL*GRPRSPAARGR Trigger: CCTACCTCTCGCAGCTGGACTCCTGGGGCGACCCCAAAGCCGCCTACCGCCTGGAACAACCTGTTGGCAGGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS GCA 72 bp | TCCAGATGTTCGGTGCGCGGGTTGAGACTGGCCCGCTaGTCAAAGGGGGCTTCGAACTCGTTGGCCCCAGCA | + |
|
Preference number: 6 (lower is better) Translates to: SRCSVRGLRLAR*SKGASNSLAPA Trigger: TGCTGGGGCCAACGAGTTCGAAGCCCCCTTTGAGCAGCGGGCCAGTCTCAACCCGCGCACCGAACATCTGGA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS CCA 72 bp | CCAGCGCGGAGTAGCTCGGGCTGGCTCGGTAGTAGCTaGGTACAGGTACCTCGTGCTCCCCAAGGCAAGACT | + |
|
Preference number: 6 (lower is better) Translates to: PARSSSGWLGSS*VQVPRAPQGKT Trigger: AGTCTTGCCTTGGGGAGCACGAGGTACCTGTACCCAGCTACTACCGAGCCAGCCCGAGCTACTCCGCGCTGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS CAA 72 bp | TGGGTAGGAACAGGAGGACAGAGGCCTGCCAACAGGTaGTTCCAGGCGGTAGGCGGCTTTGGGGTCGCCCCA | + |
|
Preference number: 6 (lower is better) Translates to: WVGTGGQRPANR*FQAVGGFGVAP Trigger: TGGGGCGACCCCAAAGCCGCCTACCGCCTGGAACAACCTGTTGGCAGGCCTCTGTCCTCCTGTTCCTACCCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS CAA 90 bp | GACACTAGGTGGGTAGGAACAGGAGGACAGAGGCCTGCCAACAGGTaGTTCCAGGCGGTAGGCGGCTTTGGGGTCGCCCCAGGAGTCCAG | + |
|
Preference number: 6 (lower is better) Translates to: DTRWVGTGGQRPANR*FQAVGGFGVAPGVQ Trigger: CTGGACTCCTGGGGCGACCCCAAAGCCGCCTACCGCCTGGAACAACCTGTTGGCAGGCCTCTGTCCTCCTGTTCCTACCCACCTAGTGTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS TCA 72 bp | AGGAGTCCAGCTGCGAGAGGTAGGACGGGTAGGTGTTaGGGGCTAGGTTTGGGCTGCCTCCCTCGTCCCTCT | + |
|
Preference number: 6 (lower is better) Translates to: RSPAARGRTGRC*GLGLGCLPRPS Trigger: AGAGGGACGAGGGAGGCAGCCCAAACCTAGCCCTCAACACCTACCCGTCCTACCTCTCGCAGCTGGACTCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS GCA 72 bp | AAGGCAAGACTCCGGCAGGGGGTGGGAGTAGAGAGCTaGCTCAGGGCCACTTTTCGCCCGCTTCTCTGCACT | + |
|
Preference number: 6 (lower is better) Translates to: KARLRQGVGVES*LRATFRPLLCT Trigger: AGTGCAGAGAAGCGGGCGAAAAGTGGCCCTGAGGCAGCTCTCTACTCCCACCCCCTGCCGGAGTCTTGCCTT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS CCA 72 bp | AGTGGGGCGTTTTGTCCAGCGCGGAGTAGCTCGGGCTaGCTCGGTAGTAGCTGGGTACAGGTACCTCGTGCT | + |
|
Preference number: 6 (lower is better) Translates to: SGAFCPARSSSG*LGSSWVQVPRA Trigger: AGCACGAGGTACCTGTACCCAGCTACTACCGAGCCAGCCCGAGCTACTCCGCGCTGGACAAAACGCCCCACT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
||
| CDS CCA 72 bp | CGTTATCCGAGGTGTCTGGACTGGAGTCTGCGGTCTTaGCCCGTTCCTTCTCGCTCTCCGAGGGGCTGGCTT | + |
|
Preference number: 6 (lower is better) Translates to: RYPRCLDWSLRS*PVPSRSPRGWL Trigger: AAGCCAGCCCCTCGGAGAGCGAGAAGGAACGGGCCAAGACCGCAGACTCCAGTCCAGACACCTCGGATAACG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS CAA 72 bp | GGGCTGGCTTTTGGGCCCGCCAGGCTTTGCTCTGTCTaGATCTCATTGGGACTGGGGGTCTGGCTGTCGGAC | + |
|
Preference number: 6 (lower is better) Translates to: GLAFGPARLCSV*ISLGLGVWLSD Trigger: GTCCGACAGCCAGACCCCCAGTCCCAATGAGATCAAGACAGAGCAAAGCCTGGCGGGCCCAAAAGCCAGCCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS CAA 72 bp | TCGTTATCCGAGGTGTCTGGACTGGAGTCTGCGGTCTaGGCCCGTTCCTTCTCGCTCTCCGAGGGGCTGGCT | + |
|
Preference number: 6 (lower is better) Translates to: SLSEVSGLESAV*ARSFSLSEGLA Trigger: AGCCAGCCCCTCGGAGAGCGAGAAGGAACGGGCCAAGACCGCAGACTCCAGTCCAGACACCTCGGATAACGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS TCA 72 bp | CAAGCTGAGGCGATTCCAGATGTTCGGTGCGCGGGTTaGGACTGGCCCGCTGCTCAAAGGGGGCTTCGAACT | + |
|
Preference number: 6 (lower is better) Translates to: QAEAIPDVRCAG*DWPAAQRGLRT Trigger: AGTTCGAAGCCCCCTTTGAGCAGCGGGCCAGTCTCAACCCGCGCACCGAACATCTGGAATCGCCTCAGCTTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS TCA 72 bp | GGCTGGCTTTTGGGCCCGCCAGGCTTTGCTCTGTCTTaGTCTCATTGGGACTGGGGGTCTGGCTGTCGGACT | + |
|
Preference number: 6 (lower is better) Translates to: GWLLGPPGFALS*SHWDWGSGCRT Trigger: AGTCCGACAGCCAGACCCCCAGTCCCAATGAGATCAAGACAGAGCAAAGCCTGGCGGGCCCAAAAGCCAGCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS CCA 72 bp | GGCCCGTTCCTTCTCGCTCTCCGAGGGGCTGGCTTTTaGGCCCGCCAGGCTTTGCTCTGTCTTGATCTCATT | + |
|
Preference number: 6 (lower is better) Translates to: GPFLLALRGAGF*ARQALLCLDLI Trigger: AATGAGATCAAGACAGAGCAAAGCCTGGCGGGCCCAAAAGCCAGCCCCTCGGAGAGCGAGAAGGAACGGGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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| CDS CAA 72 bp | GAGGGCGCGAGCCCGCAGCCCCTCATCACCCCGCAGTaGAAGTCACTCCCAGATTGCATATACATTCCTGCG | + |
|
Preference number: 6 (lower is better) Translates to: EGASPQPLITPQ*KSLPDCIYIPA Trigger: CGCAGGAATGTATATGCAATCTGGGAGTGACTTCAACTGCGGGGTGATGAGGGGCTGCGGGCTCGCGCCCTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
||
| CDS CAA 90 bp | TCTTTAGCTTCGTTATCCGAGGTGTCTGGACTGGAGTCTGCGGTCTaGGCCCGTTCCTTCTCGCTCTCCGAGGGGCTGGCTTTTGGGCCC | + |
|
Preference number: 6 (lower is better) Translates to: SLASLSEVSGLESAV*ARSFSLSEGLAFGP Trigger: GGGCCCAAAAGCCAGCCCCTCGGAGAGCGAGAAGGAACGGGCCAAGACCGCAGACTCCAGTCCAGACACCTCGGATAACGAAGCTAAAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
||
| CDS TCA 72 bp | AGGGCGCGAGCCCGCAGCCCCTCATCACCCCGCAGTTaGAGTCACTCCCAGATTGCATATACATTCCTGCGT | + |
|
Preference number: 6 (lower is better) Translates to: RARARSPSSPRS*SHSQIAYTFLR Trigger: ACGCAGGAATGTATATGCAATCTGGGAGTGACTTCAACTGCGGGGTGATGAGGGGCTGCGGGCTCGCGCCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
||
| CDS GCA 72 bp | TTTAGCTTCGTTATCCGAGGTGTCTGGACTGGAGTCTaGGGTCTTGGCCCGTTCCTTCTCGCTCTCCGAGGG | + |
|
Preference number: 6 (lower is better) Translates to: FSFVIRGVWTGV*GLGPFLLALRG Trigger: CCCTCGGAGAGCGAGAAGGAACGGGCCAAGACCGCAGACTCCAGTCCAGACACCTCGGATAACGAAGCTAAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
||
| CDS CAA 90 bp | TTGGAGAGAGAGGGCGCGAGCCCGCAGCCCCTCATCACCCCGCAGTaGAAGTCACTCCCAGATTGCATATACATTCCTGCGTTACGGTTA | + |
|
Preference number: 6 (lower is better) Translates to: LEREGASPQPLITPQ*KSLPDCIYIPALRL Trigger: TAACCGTAACGCAGGAATGTATATGCAATCTGGGAGTGACTTCAACTGCGGGGTGATGAGGGGCTGCGGGCTCGCGCCCTCTCTCTCCAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
||
| CDS GCA 72 bp | GAGAGCTGCCTCAGGGCCACTTTTCGCCCGCTTCTCTaGACTGTACATGCAGCAGACATTCTCCTCCTTGAC | + |
|
Preference number: 6 (lower is better) Translates to: ESCLRATFRPLL*TVHAADILLLD Trigger: GTCAAGGAGGAGAATGTCTGCTGCATGTACAGTGCAGAGAAGCGGGCGAAAAGTGGCCCTGAGGCAGCTCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
||
| CDS CCA 72 bp | GTACATGCAGCAGACATTCTCCTCCTTGACACTAGGTaGGTAGGAACAGGAGGACAGAGGCCTGCCAACAGG | + |
|
Preference number: 6 (lower is better) Translates to: VHAADILLLDTR*VGTGGQRPANR Trigger: CCTGTTGGCAGGCCTCTGTCCTCCTGTTCCTACCCACCTAGTGTCAAGGAGGAGAATGTCTGCTGCATGTAC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
||
| CDS GCA 72 bp | GCAGTTGAAGTCACTCCCAGATTGCATATACATTCCTaGGTTACGGTTATAGCGCTCTCCTCCTCCCGGCGC | + |
|
Preference number: 6 (lower is better) Translates to: AVEVTPRLHIHS*VTVIALSSSRR Trigger: GCGCCGGGAGGAGGAGAGCGCTATAACCGTAACGCAGGAATGTATATGCAATCTGGGAGTGACTTCAACTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001699.8 |
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