Pregenerated sensors for HOXB8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000056648Ensembl transcript IDs: ENSMUST00000052650.4, ENSMUST00000125410.2, ENSMUST00000168043.2
Found 83 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCTCACACACAGAAGCTATTACGAGATACTACCACTAGCGGGGACTaGCGCGGCGGGGGACGCTGCTGTGGGAGGCCCAGCTCCTGGCTC | + |
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Preference number: 1 (lower is better) Translates to: AHTQKLLRDTTTSGD*RGGGRCCGRPSSWL Trigger: GAGCCAGGAGCTGGGCCTCCCACAGCAGCGTCCCCCGCCGCGCCAGTCCCCGCTAGTGGTAGTATCTCGTAATAGCTTCTGTGTGTGAGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| 3UTR TCA 90 bp | GATGGGGACGCGGTGAGAGAAAGAGAGCGAGAGAAAGAGAGAAAGTaGGCGGGAGACAGAAAGAATTACGGCGTGAATAGGCAGTTTCAT | + |
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Preference number: 1 (lower is better) Translates to: DGDAVREREREKERK*AGDRKNYGVNRQFH Trigger: ATGAAACTGCCTATTCACGCCGTAATTCTTTCTGTCTCCCGCTCACTTTCTCTCTTTCTCTCGCTCTCTTTCTCTCACCGCGTCCCCATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052650.4 |
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| 3UTR-3UTR CCA 90 bp | GCGGGGGCGAGGGGGTTCTGCCAGGCCGCAGTCGATCACCCTCGCAGGACGAGGACCACTAGCGGGGACTaGCGCGGCGGGGGACGCTGC | + |
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Preference number: 2 (lower is better) Translates to: AGARGFCQAAVDHPRRTRTTSGD*RGGGRC Trigger: GCAGCGTCCCCCGCCGCGCCAGTCCCCGCTAGTGGT...CCTCGTCCTGCGAGGGTGATCGACTGCGGCCTGGCAGAACCCCCTCGCCCCCGC 74% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt. Matches the following 1 transcripts: ENSMUST00000052650.4 |
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| 3UTR GCA 72 bp | ACTACCACTAGCGGGGACTGGCGCGGCGGGGGACGCTaGTGTGGGAGGCCCAGCTCCTGGCTCCGCTCGCGG | + |
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Preference number: 3 (lower is better) Translates to: TTTSGDWRGGGR*CGRPSSWLRSR Trigger: CCGCGAGCGGAGCCAGGAGCTGGGCCTCCCACAGCAGCGTCCCCCGCCGCGCCAGTCCCCGCTAGTGGTAGT 75% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| 3UTR CCA 72 bp | CAGAAGCTATTACGAGATACTACCACTAGCGGGGACTaGCGCGGCGGGGGACGCTGCTGTGGGAGGCCCAGC | + |
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Preference number: 3 (lower is better) Translates to: QKLLRDTTTSGD*RGGGRCCGRPS Trigger: GCTGGGCCTCCCACAGCAGCGTCCCCCGCCGCGCCAGTCCCCGCTAGTGGTAGTATCTCGTAATAGCTTCTG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| 3UTR TCA 72 bp | AGAGAAAGTGAGCGGGAGACAGAAAGAATTACGGCGTaGATAGGCAGTTTCATGTTGTTGGGAAAACTTAGC | + |
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Preference number: 3 (lower is better) Translates to: RESERETERITA*IGSFMLLGKLS Trigger: GCTAAGTTTTCCCAACAACATGAAACTGCCTATTCACGCCGTAATTCTTTCTGTCTCCCGCTCACTTTCTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052650.4 |
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| CDS-3UTR GCA 90 bp | TGGGAGGCCCAGCTCCTGGCTCCGCTCGCGGGGCCGGAGCTCTCGGAGGCGGGGTGGCTGCCGCGAGCTTaGAGTCTGCGTACTGCACCA | + |
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Preference number: 4 (lower is better) Translates to: WEAQLLAPLAGPELSEAGWLPRA*SLRTAP Trigger: TGGTGCAGTACGCAGACTGCAAGCTCGCGGCAGCCA...CCCCGCCTCCGAGAGCTCCGGCCCCGCGAGCGGAGCCAGGAGCTGGGCCTCCCA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS-3UTR CCA 90 bp | TGGGAGGCCCAGCTCCTGGCTCCGCTCGCGGGGCCGGAGCTCTCGGAGGCGGGGATTTGCGAAGGGTGCTaGAAGCTGCCGCCGCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: WEAQLLAPLAGPELSEAGICEGC*KLPPLL Trigger: CAGCAGCGGCGGCAGCTTCCAGCACCCTTCGCAAAT...CCCCGCCTCCGAGAGCTCCGGCCCCGCGAGCGGAGCCAGGAGCTGGGCCTCCCA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS-3UTR GCA 90 bp | GGGGCGAGGGGGTTCTGCCAGGCCGCAGTCGATCACCCTCGCAGGACGAGGGAGAAGGGTGCTGGAAGCTaGCGCCGCTGCTGGGACCGT | + |
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Preference number: 4 (lower is better) Translates to: GARGFCQAAVDHPRRTREKGAGS*RRCWDR Trigger: ACGGTCCCAGCAGCGGCGGCAGCTTCCAGCACCCTT...CTCCCTCGTCCTGCGAGGGTGATCGACTGCGGCCTGGCAGAACCCCCTCGCCCC 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052650.4 |
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| CDS-3UTR GCA 90 bp | GCGGGGGCGAGGGGGTTCTGCCAGGCCGCAGTCGATCACCCTCGCAGGACGAGGCGCGAGCTTGCAGTCTaGGTACTGCACCAGGTCTGG | + |
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Preference number: 4 (lower is better) Translates to: AGARGFCQAAVDHPRRTRRELAV*VLHQVW Trigger: CCAGACCTGGTGCAGTACGCAGACTGCAAGCTCGCG...CCTCGTCCTGCGAGGGTGATCGACTGCGGCCTGGCAGAACCCCCTCGCCCCCGC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000052650.4 |
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| CDS-3UTR GCA 90 bp | GGGGCGAGGGGGTTCTGCCAGGCCGCAGTCGATCACCCTCGCAGGACGAGGGAGGTCAGTCCCAGCGCGTaGGATACCTCGATCCTCCGC | + |
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Preference number: 4 (lower is better) Translates to: GARGFCQAAVDHPRRTREVSPSA*DTSILR Trigger: GCGGAGGATCGAGGTATCGCACGCGCTGGGACTGAC...CTCCCTCGTCCTGCGAGGGTGATCGACTGCGGCCTGGCAGAACCCCCTCGCCCC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052650.4 |
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| CDS-3UTR GCA 90 bp | CACACACAGAAGCTATTACGAGATACTACCACTAGCGGGGACTGGCGCGGCGGGGCCCAGGCCGCTGGCTaGCGCGAGCTTGCAGTCTGC | + |
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Preference number: 4 (lower is better) Translates to: HTQKLLRDTTTSGDWRGGAQAAG*RELAVC Trigger: GCAGACTGCAAGCTCGCGGCAGCCAGCGGCCTGGGC...CCCGCCGCGCCAGTCCCCGCTAGTGGTAGTATCTCGTAATAGCTTCTGTGTGTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS-3UTR GCA 90 bp | CACACACAGAAGCTATTACGAGATACTACCACTAGCGGGGACTGGCGCGGCGGGGGAAGCTGCCGCCGCTaGTGGGACCGTACACCACGG | + |
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Preference number: 4 (lower is better) Translates to: HTQKLLRDTTTSGDWRGGGSCRR*WDRTPR Trigger: CCGTGGTGTACGGTCCCAGCAGCGGCGGCAGCTTCC...CCCGCCGCGCCAGTCCCCGCTAGTGGTAGTATCTCGTAATAGCTTCTGTGTGTG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS-3UTR GCA 90 bp | CTATTACGAGATACTACCACTAGCGGGGACTGGCGCGGCGGGGGACGCTGCTGTGTCAGTCCCAGCGCGTaGGATACCTCGATCCTCCGC | + |
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Preference number: 4 (lower is better) Translates to: LLRDTTTSGDWRGGGRCCVSPSA*DTSILR Trigger: GCGGAGGATCGAGGTATCGCACGCGCTGGGACTGAC...ACAGCAGCGTCCCCCGCCGCGCCAGTCCCCGCTAGTGGTAGTATCTCGTAATAG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS-3UTR GCA 90 bp | CACACACAGAAGCTATTACGAGATACTACCACTAGCGGGGACTGGCGCGGCGGGAAGGGTGCTGGAAGCTaGCGCCGCTGCTGGGACCGT | + |
|
Preference number: 4 (lower is better) Translates to: HTQKLLRDTTTSGDWRGGKGAGS*RRCWDR Trigger: ACGGTCCCAGCAGCGGCGGCAGCTTCCAGCACCCTT...CCCGCCGCGCCAGTCCCCGCTAGTGGTAGTATCTCGTAATAGCTTCTGTGTGTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS-3UTR CCA 90 bp | CTATTACGAGATACTACCACTAGCGGGGACTGGCGCGGCGGGGGACGCTGCTGTTGTGGACAGCGACGATaGCCCGTGGTAGAACTCCTG | + |
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Preference number: 4 (lower is better) Translates to: LLRDTTTSGDWRGGGRCCCGQRR*PVVELL Trigger: CAGGAGTTCTACCACGGGCCATCGTCGCTGTCCACA...ACAGCAGCGTCCCCCGCCGCGCCAGTCCCCGCTAGTGGTAGTATCTCGTAATAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS-3UTR CCA 90 bp | CACACACAGAAGCTATTACGAGATACTACCACTAGCGGGGACTGGCGCGGCGGGGCTGGTAGGGAGCTGTaGACAGCGACGATGGCCCGT | + |
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Preference number: 4 (lower is better) Translates to: HTQKLLRDTTTSGDWRGGAGREL*TATMAR Trigger: ACGGGCCATCGTCGCTGTCCACAGCTCCCTACCAGC...CCCGCCGCGCCAGTCCCCGCTAGTGGTAGTATCTCGTAATAGCTTCTGTGTGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS-3UTR CCA 90 bp | CTATTACGAGATACTACCACTAGCGGGGACTGGCGCGGCGGGGGACGCTGCTGTGTACTGCACCAGGTCTaGATCCTGCGCACCGAACAG | + |
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Preference number: 4 (lower is better) Translates to: LLRDTTTSGDWRGGGRCCVLHQV*ILRTEQ Trigger: CTGTTCGGTGCGCAGGATCCAGACCTGGTGCAGTAC...ACAGCAGCGTCCCCCGCCGCGCCAGTCCCCGCTAGTGGTAGTATCTCGTAATAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS-3UTR GCA 90 bp | TCCACGGTAGCTCACACACAGAAGCTATTACGAGATACTACCACTAGCGGGGACTCTGGCGGCCTCGCCTaGGTCCGGCGGCTGCTTGAG | + |
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Preference number: 4 (lower is better) Translates to: STVAHTQKLLRDTTTSGDSGGLA*VRRLLE Trigger: CTCAAGCAGCCGCCGGACGCAGGCGAGGCCGCCAGA...GTCCCCGCTAGTGGTAGTATCTCGTAATAGCTTCTGTGTGTGAGCTACCGTGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS-3UTR CCA 90 bp | GTAGCTCACACACAGAAGCTATTACGAGATACTACCACTAGCGGGGACTGGCGCGACCGTACACCACGGTaGGTCGGCCGCCCAGGTCCT | + |
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Preference number: 4 (lower is better) Translates to: VAHTQKLLRDTTTSGDWRDRTPR*VGRPGP Trigger: AGGACCTGGGCGGCCGACCCACCGTGGTGTACGGTC...GCGCCAGTCCCCGCTAGTGGTAGTATCTCGTAATAGCTTCTGTGTGTGAGCTAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS-3UTR CCA 90 bp | GTAGCTCACACACAGAAGCTATTACGAGATACTACCACTAGCGGGGACTGGCGCAGCTGCCGCCGCTGCTaGGACCGTACACCACGGTGG | + |
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Preference number: 4 (lower is better) Translates to: VAHTQKLLRDTTTSGDWRSCRRC*DRTPRW Trigger: CCACCGTGGTGTACGGTCCCAGCAGCGGCGGCAGCT...GCGCCAGTCCCCGCTAGTGGTAGTATCTCGTAATAGCTTCTGTGTGTGAGCTAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS-3UTR GCA 90 bp | GTAGCTCACACACAGAAGCTATTACGAGATACTACCACTAGCGGGGACTGGCGCCGTAGCCGTAGAAGTTaGCGGGGTCGCCGTGGCACG | + |
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Preference number: 4 (lower is better) Translates to: VAHTQKLLRDTTTSGDWRRSRRS*RGRRGT Trigger: CGTGCCACGGCGACCCCGGCAACTTCTACGGCTACG...GCGCCAGTCCCCGCTAGTGGTAGTATCTCGTAATAGCTTCTGTGTGTGAGCTAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS-3UTR GCA 90 bp | AGATCCACGGTAGCTCACACACAGAAGCTATTACGAGATACTACCACTAGCGGGGTGGGCGACGGGCTCTaGTCAGACCCCTCGGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: RSTVAHTQKLLRDTTTSGVGDGL*SDPSAS Trigger: GGAGGCCGAGGGGTCTGAGCAGAGCCCGTCGCCCAC...CCCGCTAGTGGTAGTATCTCGTAATAGCTTCTGTGTGTGAGCTACCGTGGATCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS-3UTR CCA 90 bp | TCCACGGTAGCTCACACACAGAAGCTATTACGAGATACTACCACTAGCGGGGACGACCGTACACCACGGTaGGTCGGCCGCCCAGGTCCT | + |
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Preference number: 4 (lower is better) Translates to: STVAHTQKLLRDTTTSGDDRTPR*VGRPGP Trigger: AGGACCTGGGCGGCCGACCCACCGTGGTGTACGGTC...GTCCCCGCTAGTGGTAGTATCTCGTAATAGCTTCTGTGTGTGAGCTACCGTGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS-3UTR GCA 90 bp | AGATCCACGGTAGCTCACACACAGAAGCTATTACGAGATACTACCACTAGCGGGGGAAGCTGCCGCCGCTaGTGGGACCGTACACCACGG | + |
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Preference number: 4 (lower is better) Translates to: RSTVAHTQKLLRDTTTSGGSCRR*WDRTPR Trigger: CCGTGGTGTACGGTCCCAGCAGCGGCGGCAGCTTCC...CCCGCTAGTGGTAGTATCTCGTAATAGCTTCTGTGTGTGAGCTACCGTGGATCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS-3UTR GCA 90 bp | AGGAGATCCACGGTAGCTCACACACAGAAGCTATTACGAGATACTACCACTAGCGCCCAGGCCGCTGGCTaGCGCGAGCTTGCAGTCTGC | + |
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Preference number: 4 (lower is better) Translates to: RRSTVAHTQKLLRDTTTSAQAAG*RELAVC Trigger: GCAGACTGCAAGCTCGCGGCAGCCAGCGGCCTGGGC...GCTAGTGGTAGTATCTCGTAATAGCTTCTGTGTGTGAGCTACCGTGGATCTCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS-3UTR GCA 90 bp | AGGAGATCCACGGTAGCTCACACACAGAAGCTATTACGAGATACTACCACTAGCGTGGGCGACGGGCTCTaGTCAGACCCCTCGGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: RRSTVAHTQKLLRDTTTSVGDGL*SDPSAS Trigger: GGAGGCCGAGGGGTCTGAGCAGAGCCCGTCGCCCAC...GCTAGTGGTAGTATCTCGTAATAGCTTCTGTGTGTGAGCTACCGTGGATCTCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS-3UTR CCA 90 bp | AGGAGATCCACGGTAGCTCACACACAGAAGCTATTACGAGATACTACCACTAGCCCTCGCCCAGGCCGCTaGCTGCCGCGAGCTTGCAGT | + |
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Preference number: 4 (lower is better) Translates to: RRSTVAHTQKLLRDTTTSPRPGR*LPRACS Trigger: ACTGCAAGCTCGCGGCAGCCAGCGGCCTGGGCGAGG...GCTAGTGGTAGTATCTCGTAATAGCTTCTGTGTGTGAGCTACCGTGGATCTCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS-3UTR GCA 90 bp | ACTCTTCCGCCCTTTTCAGGCGCAGACAACAGAACAAAGTATAGAGGAACAACATCTGGCGGCCTCGCCTaGGTCCGGCGGCTGCTTGAG | + |
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Preference number: 4 (lower is better) Translates to: TLPPFSGADNRTKYRGTTSGGLA*VRRLLE Trigger: CTCAAGCAGCCGCCGGACGCAGGCGAGGCCGCCAGA...TGTTGTTCCTCTATACTTTGTTCTGTTGTCTGCGCCTGAAAAGGGCGGAAGAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052650.4 |
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| CDS-3UTR GCA 90 bp | AGGAGATCCACGGTAGCTCACACACAGAAGCTATTACGAGATACTACCACTAGCCGTAGCCGTAGAAGTTaGCGGGGTCGCCGTGGCACG | + |
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Preference number: 4 (lower is better) Translates to: RRSTVAHTQKLLRDTTTSRSRRS*RGRRGT Trigger: CGTGCCACGGCGACCCCGGCAACTTCTACGGCTACG...GCTAGTGGTAGTATCTCGTAATAGCTTCTGTGTGTGAGCTACCGTGGATCTCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS-3UTR GCA 90 bp | CTATTACGAGATACTACCACTAGCGGGGACTGGCGCGGCGGGGGACGCTGCTGTCCTGCTCGCATTTACTaGTGGGAAACTTGTCTTTGT | + |
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Preference number: 4 (lower is better) Translates to: LLRDTTTSGDWRGGGRCCPARIY*WETCLC Trigger: ACAAAGACAAGTTTCCCAGCAGTAAATGCGAGCAGG...ACAGCAGCGTCCCCCGCCGCGCCAGTCCCCGCTAGTGGTAGTATCTCGTAATAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS-3UTR CCA 90 bp | GTAGCTCACACACAGAAGCTATTACGAGATACTACCACTAGCGGGGACTGGCGCCGCAGTCATAATAATTaGGGCGCAGGGACTCCCCGG | + |
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Preference number: 4 (lower is better) Translates to: VAHTQKLLRDTTTSGDWRRSHNN*GAGTPR Trigger: CCGGGGAGTCCCTGCGCCCCAATTATTATGACTGCG...GCGCCAGTCCCCGCTAGTGGTAGTATCTCGTAATAGCTTCTGTGTGTGAGCTAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS-3UTR GCA 90 bp | AGATCCACGGTAGCTCACACACAGAAGCTATTACGAGATACTACCACTAGCGGGCGCGAGCTTGCAGTCTaGGTACTGCACCAGGTCTGG | + |
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Preference number: 4 (lower is better) Translates to: RSTVAHTQKLLRDTTTSGRELAV*VLHQVW Trigger: CCAGACCTGGTGCAGTACGCAGACTGCAAGCTCGCG...CCCGCTAGTGGTAGTATCTCGTAATAGCTTCTGTGTGTGAGCTACCGTGGATCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS-3UTR CCA 90 bp | AGATCCACGGTAGCTCACACACAGAAGCTATTACGAGATACTACCACTAGCGGGAGGGAAAGAGCTGTGTaGGCGACGGGCTCTGCTCAG | + |
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Preference number: 4 (lower is better) Translates to: RSTVAHTQKLLRDTTTSGRERAV*ATGSAQ Trigger: CTGAGCAGAGCCCGTCGCCCACACAGCTCTTTCCCT...CCCGCTAGTGGTAGTATCTCGTAATAGCTTCTGTGTGTGAGCTACCGTGGATCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS-3UTR GCA 90 bp | AGGAGATCCACGGTAGCTCACACACAGAAGCTATTACGAGATACTACCACTAGCTGGCTGCCGCGAGCTTaGAGTCTGCGTACTGCACCA | + |
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Preference number: 4 (lower is better) Translates to: RRSTVAHTQKLLRDTTTSWLPRA*SLRTAP Trigger: TGGTGCAGTACGCAGACTGCAAGCTCGCGGCAGCCA...GCTAGTGGTAGTATCTCGTAATAGCTTCTGTGTGTGAGCTACCGTGGATCTCCT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS-3UTR CCA 90 bp | GGAAGGAGATCCACGGTAGCTCACACACAGAAGCTATTACGAGATACTACCACTATTTGCGAAGGGTGCTaGAAGCTGCCGCCGCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: GRRSTVAHTQKLLRDTTTICEGC*KLPPLL Trigger: CAGCAGCGGCGGCAGCTTCCAGCACCCTTCGCAAAT...AGTGGTAGTATCTCGTAATAGCTTCTGTGTGTGAGCTACCGTGGATCTCCTTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS-3UTR CCA 90 bp | ACTCTTCCGCCCTTTTCAGGCGCAGACAACAGAACAAAGTATAGAGGAACAACAGCTGGTAGGGAGCTGTaGACAGCGACGATGGCCCGT | + |
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Preference number: 4 (lower is better) Translates to: TLPPFSGADNRTKYRGTTAGREL*TATMAR Trigger: ACGGGCCATCGTCGCTGTCCACAGCTCCCTACCAGC...TGTTGTTCCTCTATACTTTGTTCTGTTGTCTGCGCCTGAAAAGGGCGGAAGAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052650.4 |
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| CDS-3UTR CCA 90 bp | AGGAGATCCACGGTAGCTCACACACAGAAGCTATTACGAGATACTACCACTAGCAGGGAAAGAGCTGTGTaGGCGACGGGCTCTGCTCAG | + |
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Preference number: 4 (lower is better) Translates to: RRSTVAHTQKLLRDTTTSRERAV*ATGSAQ Trigger: CTGAGCAGAGCCCGTCGCCCACACAGCTCTTTCCCT...GCTAGTGGTAGTATCTCGTAATAGCTTCTGTGTGTGAGCTACCGTGGATCTCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS-3UTR GCA 90 bp | AGATCCACGGTAGCTCACACACAGAAGCTATTACGAGATACTACCACTAGCGGGTTGCAGTCTGCGTACTaGACCAGGTCTGGATCCTGC | + |
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Preference number: 4 (lower is better) Translates to: RSTVAHTQKLLRDTTTSGLQSAY*TRSGSC Trigger: GCAGGATCCAGACCTGGTGCAGTACGCAGACTGCAA...CCCGCTAGTGGTAGTATCTCGTAATAGCTTCTGTGTGTGAGCTACCGTGGATCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS-3UTR CCA 90 bp | AGGAGATCCACGGTAGCTCACACACAGAAGCTATTACGAGATACTACCACTAGCCGCAGTCATAATAATTaGGGCGCAGGGACTCCCCGG | + |
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Preference number: 4 (lower is better) Translates to: RRSTVAHTQKLLRDTTTSRSHNN*GAGTPR Trigger: CCGGGGAGTCCCTGCGCCCCAATTATTATGACTGCG...GCTAGTGGTAGTATCTCGTAATAGCTTCTGTGTGTGAGCTACCGTGGATCTCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS-3UTR GCA 90 bp | AAGGGAAGGAGATCCACGGTAGCTCACACACAGAAGCTATTACGAGATACTACCTTGCAGTCTGCGTACTaGACCAGGTCTGGATCCTGC | + |
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Preference number: 4 (lower is better) Translates to: KGRRSTVAHTQKLLRDTTLQSAY*TRSGSC Trigger: GCAGGATCCAGACCTGGTGCAGTACGCAGACTGCAA...GGTAGTATCTCGTAATAGCTTCTGTGTGTGAGCTACCGTGGATCTCCTTCCCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS-3UTR GCA 90 bp | AGGAGATCCACGGTAGCTCACACACAGAAGCTATTACGAGATACTACCACTAGCTTCTCCAGCTCCTCCTaGTCGCATTTACTGCTGGGA | + |
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Preference number: 4 (lower is better) Translates to: RRSTVAHTQKLLRDTTTSFSSSS*SHLLLG Trigger: TCCCAGCAGTAAATGCGAGCAGGAGGAGCTGGAGAA...GCTAGTGGTAGTATCTCGTAATAGCTTCTGTGTGTGAGCTACCGTGGATCTCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS-3UTR GCA 90 bp | TCCACGGTAGCTCACACACAGAAGCTATTACGAGATACTACCACTAGCGGGGACCCTGCTCGCATTTACTaGTGGGAAACTTGTCTTTGT | + |
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Preference number: 4 (lower is better) Translates to: STVAHTQKLLRDTTTSGDPARIY*WETCLC Trigger: ACAAAGACAAGTTTCCCAGCAGTAAATGCGAGCAGG...GTCCCCGCTAGTGGTAGTATCTCGTAATAGCTTCTGTGTGTGAGCTACCGTGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS-3UTR GCA 90 bp | AACCTAAGAACACTTTTAACAATGCTCACAGCGCGCATGCTAACTAAAGTAATCTGGATTTGCGAAGGGTaGTGGAAGCTGCCGCCGCTG | + |
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Preference number: 4 (lower is better) Translates to: NLRTLLTMLTARMLTKVIWICEG*WKLPPL Trigger: CAGCGGCGGCAGCTTCCAGCACCCTTCGCAAATCCA...GATTACTTTAGTTAGCATGCGCGCTGTGAGCATTGTTAAAAGTGTTCTTAGGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052650.4 |
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| CDS-3UTR CCA 90 bp | ATTCTCTTCACAGTAAACCTAAGAACACTTTTAACAATGCTCACAGCGCGCATGGTACTGCACCAGGTCTaGATCCTGCGCACCGAACAG | + |
|
Preference number: 4 (lower is better) Translates to: ILFTVNLRTLLTMLTARMVLHQV*ILRTEQ Trigger: CTGTTCGGTGCGCAGGATCCAGACCTGGTGCAGTAC...CATGCGCGCTGTGAGCATTGTTAAAAGTGTTCTTAGGTTTACTGTGAAGAGAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052650.4 |
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| CDS-3UTR GCA 90 bp | ATTCTCTTCACAGTAAACCTAAGAACACTTTTAACAATGCTCACAGCGCGCATGTTCTCCAGCTCCTCCTaGTCGCATTTACTGCTGGGA | + |
|
Preference number: 4 (lower is better) Translates to: ILFTVNLRTLLTMLTARMFSSSS*SHLLLG Trigger: TCCCAGCAGTAAATGCGAGCAGGAGGAGCTGGAGAA...CATGCGCGCTGTGAGCATTGTTAAAAGTGTTCTTAGGTTTACTGTGAAGAGAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052650.4 |
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| CDS CCA 90 bp | GCCTGCGTCCGGCGGCTTGAGGGCGCATCCAGGGAAAGAGCTGTGTaGGCGACGGGCTCTGCTCAGACCCCTCGGCCTCCTCGCCCAGGC | + |
|
Preference number: 5 (lower is better) Translates to: ACVRRLEGASRERAV*ATGSAQTPRPPRPG Trigger: GCCTGGGCGAGGAGGCCGAGGGGTCTGAGCAGAGCCCGTCGCCCACACAGCTCTTTCCCTGGATGCGCCCTCAAGCCGCCGGACGCAGGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125410.2 |
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| CDS CCA 90 bp | TGCGTCCGGCGGCTGCTTGAGGGCGCATCCAGGGAAAGAGCTGTGTaGGCGACGGGCTCTGCTCAGACCCCTCGGCCTCCTCGCCCAGGC | + |
|
Preference number: 5 (lower is better) Translates to: CVRRLLEGASRERAV*ATGSAQTPRPPRPG Trigger: GCCTGGGCGAGGAGGCCGAGGGGTCTGAGCAGAGCCCGTCGCCCACACAGCTCTTTCCCTGGATGCGCCCTCAAGCAGCCGCCGGACGCA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS GCA 90 bp | CGGGCTCTGCTCAGACCCCTCGGCCTCCTCGCCCAGGCCGCTGGCTaGCGCGAGCTTGCAGTCTGCGTACTGCACCAGGTCTGGATCCTG | + |
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Preference number: 5 (lower is better) Translates to: RALLRPLGLLAQAAG*RELAVCVLHQVWIL Trigger: CAGGATCCAGACCTGGTGCAGTACGCAGACTGCAAGCTCGCGGCAGCCAGCGGCCTGGGCGAGGAGGCCGAGGGGTCTGAGCAGAGCCCG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000052650.4 ENSMUST00000125410.2 ENSMUST00000168043.2 |
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| CDS CCA 90 bp | GCGACGGGCTCTGCTCAGACCCCTCGGCCTCCTCGCCCAGGCCGCTaGCTGCCGCGAGCTTGCAGTCTGCGTACTGCACCAGGTCTGGAT | + |
|
Preference number: 5 (lower is better) Translates to: ATGSAQTPRPPRPGR*LPRACSLRTAPGLD Trigger: ATCCAGACCTGGTGCAGTACGCAGACTGCAAGCTCGCGGCAGCCAGCGGCCTGGGCGAGGAGGCCGAGGGGTCTGAGCAGAGCCCGTCGC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000052650.4 ENSMUST00000125410.2 ENSMUST00000168043.2 |
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| CDS GCA 90 bp | TCCTCGCCCAGGCCGCTGGCTGCCGCGAGCTTGCAGTCTGCGTACTaGACCAGGTCTGGATCCTGCGCACCGAACAGGCTCTGGCGCTGC | + |
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Preference number: 5 (lower is better) Translates to: SSPRPLAAASLQSAY*TRSGSCAPNRLWRC Trigger: GCAGCGCCAGAGCCTGTTCGGTGCGCAGGATCCAGACCTGGTGCAGTACGCAGACTGCAAGCTCGCGGCAGCCAGCGGCCTGGGCGAGGA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000052650.4 ENSMUST00000125410.2 ENSMUST00000168043.2 |
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| CDS GCA 90 bp | CTCGGCCTCCTCGCCCAGGCCGCTGGCTGCCGCGAGCTTGCAGTCTaGGTACTGCACCAGGTCTGGATCCTGCGCACCGAACAGGCTCTG | + |
|
Preference number: 5 (lower is better) Translates to: LGLLAQAAGCRELAV*VLHQVWILRTEQAL Trigger: CAGAGCCTGTTCGGTGCGCAGGATCCAGACCTGGTGCAGTACGCAGACTGCAAGCTCGCGGCAGCCAGCGGCCTGGGCGAGGAGGCCGAG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000052650.4 ENSMUST00000125410.2 ENSMUST00000168043.2 |
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| CDS GCA 90 bp | CAGACCCCTCGGCCTCCTCGCCCAGGCCGCTGGCTGCCGCGAGCTTaGAGTCTGCGTACTGCACCAGGTCTGGATCCTGCGCACCGAACA | + |
|
Preference number: 5 (lower is better) Translates to: QTPRPPRPGRWLPRA*SLRTAPGLDPAHRT Trigger: TGTTCGGTGCGCAGGATCCAGACCTGGTGCAGTACGCAGACTGCAAGCTCGCGGCAGCCAGCGGCCTGGGCGAGGAGGCCGAGGGGTCTG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000052650.4 ENSMUST00000125410.2 ENSMUST00000168043.2 |
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| CDS GCA 90 bp | GGTAGAACTCCTGGATTTGCGAAGGGTGCTGGAAGCTGCCGCCGCTaGTGGGACCGTACACCACGGTGGGTCGGCCGCCCAGGTCCTGGG | + |
|
Preference number: 5 (lower is better) Translates to: GRTPGFAKGAGSCRR*WDRTPRWVGRPGPG Trigger: CCCAGGACCTGGGCGGCCGACCCACCGTGGTGTACGGTCCCAGCAGCGGCGGCAGCTTCCAGCACCCTTCGCAAATCCAGGAGTTCTACC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000052650.4 ENSMUST00000125410.2 ENSMUST00000168043.2 |
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| CDS CCA 90 bp | AGAACTCCTGGATTTGCGAAGGGTGCTGGAAGCTGCCGCCGCTGCTaGGACCGTACACCACGGTGGGTCGGCCGCCCAGGTCCTGGGCGA | + |
|
Preference number: 5 (lower is better) Translates to: RTPGFAKGAGSCRRC*DRTPRWVGRPGPGR Trigger: TCGCCCAGGACCTGGGCGGCCGACCCACCGTGGTGTACGGTCCCAGCAGCGGCGGCAGCTTCCAGCACCCTTCGCAAATCCAGGAGTTCT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000052650.4 ENSMUST00000125410.2 ENSMUST00000168043.2 |
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| CDS CCA 90 bp | GCCGCTGGCTGCCGCGAGCTTGCAGTCTGCGTACTGCACCAGGTCTaGATCCTGCGCACCGAACAGGCTCTGGCGCTGCAGAGGGTCGTA | + |
|
Preference number: 5 (lower is better) Translates to: AAGCRELAVCVLHQV*ILRTEQALALQRVV Trigger: TACGACCCTCTGCAGCGCCAGAGCCTGTTCGGTGCGCAGGATCCAGACCTGGTGCAGTACGCAGACTGCAAGCTCGCGGCAGCCAGCGGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000052650.4 ENSMUST00000125410.2 ENSMUST00000168043.2 |
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| CDS CCA 90 bp | CGCCGTGGCACGCCACGGCGCACGGGTTCTGCTGGTAGGGAGCTGTaGACAGCGACGATGGCCCGTGGTAGAACTCCTGGATTTGCGAAG | + |
|
Preference number: 5 (lower is better) Translates to: RRGTPRRTGSAGREL*TATMARGRTPGFAK Trigger: CTTCGCAAATCCAGGAGTTCTACCACGGGCCATCGTCGCTGTCCACAGCTCCCTACCAGCAGAACCCGTGCGCCGTGGCGTGCCACGGCG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000052650.4 ENSMUST00000125410.2 ENSMUST00000168043.2 |
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| CDS-3UTR CAA 90 bp | TGGGAGGCCCAGCTCCTGGCTCCGCTCGCGGGGCCGGAGCTCTCGGAGGCGGGGCTGGGAAACTTGTCTTaGTTGTTCTCCTTTTTCCAC | + |
|
Preference number: 5 (lower is better) Translates to: WEAQLLAPLAGPELSEAGLGNLS*LFSFFH Trigger: GTGGAAAAAGGAGAACAACAAAGACAAGTTTCCCAG...CCCCGCCTCCGAGAGCTCCGGCCCCGCGAGCGGAGCCAGGAGCTGGGCCTCCCA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS CCA 90 bp | CACGGCGCACGGGTTCTGCTGGTAGGGAGCTGTGGACAGCGACGATaGCCCGTGGTAGAACTCCTGGATTTGCGAAGGGTGCTGGAAGCT | + |
|
Preference number: 5 (lower is better) Translates to: HGARVLLVGSCGQRR*PVVELLDLRRVLEA Trigger: AGCTTCCAGCACCCTTCGCAAATCCAGGAGTTCTACCACGGGCCATCGTCGCTGTCCACAGCTCCCTACCAGCAGAACCCGTGCGCCGTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000052650.4 ENSMUST00000125410.2 ENSMUST00000168043.2 |
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| CDS-3UTR CAA 90 bp | AGGAGATCCACGGTAGCTCACACACAGAAGCTATTACGAGATACTACCACTAGCCTGGCTGCCGCGAGCTaGCAGTCTGCGTACTGCACC | + |
|
Preference number: 5 (lower is better) Translates to: RRSTVAHTQKLLRDTTTSLAAAS*QSAYCT Trigger: GGTGCAGTACGCAGACTGCAAGCTCGCGGCAGCCAG...GCTAGTGGTAGTATCTCGTAATAGCTTCTGTGTGTGAGCTACCGTGGATCTCCT 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS GCA 90 bp | GCGGTCTCTGGTGCCCGCTCCAGCTTCTCTTTCTCCAGCTCCTCCTaGTCGCATTTACTGCTGGGAAACTTGTCTTTGTTGTTCTCCTTT | + |
|
Preference number: 5 (lower is better) Translates to: AVSGARSSFSFSSSS*SHLLLGNLSLLFSF Trigger: AAAGGAGAACAACAAAGACAAGTTTCCCAGCAGTAAATGCGAGCAGGAGGAGCTGGAGAAAGAGAAGCTGGAGCGGGCACCAGAGACCGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS-3UTR CAA 90 bp | GTAGCTCACACACAGAAGCTATTACGAGATACTACCACTAGCGGGGACTGGCGCGTAGAACTCCTGGATTaGCGAAGGGTGCTGGAAGCT | + |
|
Preference number: 5 (lower is better) Translates to: VAHTQKLLRDTTTSGDWRVELLD*RRVLEA Trigger: AGCTTCCAGCACCCTTCGCAAATCCAGGAGTTCTAC...GCGCCAGTCCCCGCTAGTGGTAGTATCTCGTAATAGCTTCTGTGTGTGAGCTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS-3UTR CAA 90 bp | TCCACGGTAGCTCACACACAGAAGCTATTACGAGATACTACCACTAGCGGGGACTCCCCGGTTTTGTATTaGGAGAACAGTGAGTTGACG | + |
|
Preference number: 5 (lower is better) Translates to: STVAHTQKLLRDTTTSGDSPVLY*ENSELT Trigger: CGTCAACTCACTGTTCTCCAAATACAAAACCGGGGA...GTCCCCGCTAGTGGTAGTATCTCGTAATAGCTTCTGTGTGTGAGCTACCGTGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS-3UTR CAA 90 bp | GGAAGGAGATCCACGGTAGCTCACACACAGAAGCTATTACGAGATACTACCACTGTAGAACTCCTGGATTaGCGAAGGGTGCTGGAAGCT | + |
|
Preference number: 5 (lower is better) Translates to: GRRSTVAHTQKLLRDTTTVELLD*RRVLEA Trigger: AGCTTCCAGCACCCTTCGCAAATCCAGGAGTTCTAC...AGTGGTAGTATCTCGTAATAGCTTCTGTGTGTGAGCTACCGTGGATCTCCTTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS-3UTR CAA 90 bp | AACCTAAGAACACTTTTAACAATGCTCACAGCGCGCATGCTAACTAAAGTAATCCTGGCTGCCGCGAGCTaGCAGTCTGCGTACTGCACC | + |
|
Preference number: 5 (lower is better) Translates to: NLRTLLTMLTARMLTKVILAAAS*QSAYCT Trigger: GGTGCAGTACGCAGACTGCAAGCTCGCGGCAGCCAG...GATTACTTTAGTTAGCATGCGCGCTGTGAGCATTGTTAAAAGTGTTCTTAGGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052650.4 |
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| CDS-3UTR CAA 90 bp | TCCACGGTAGCTCACACACAGAAGCTATTACGAGATACTACCACTAGCGGGGACCTGGGAAACTTGTCTTaGTTGTTCTCCTTTTTCCAC | + |
|
Preference number: 5 (lower is better) Translates to: STVAHTQKLLRDTTTSGDLGNLS*LFSFFH Trigger: GTGGAAAAAGGAGAACAACAAAGACAAGTTTCCCAG...GTCCCCGCTAGTGGTAGTATCTCGTAATAGCTTCTGTGTGTGAGCTACCGTGGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS CCA 72 bp | GGAAGCTGCCGCCGCTGCTGGGACCGTACACCACGGTaGGTCGGCCGCCCAGGTCCTGGGCGAAGCCGCAGT | + |
|
Preference number: 6 (lower is better) Translates to: GSCRRCWDRTPR*VGRPGPGRSRS Trigger: ACTGCGGCTTCGCCCAGGACCTGGGCGGCCGACCCACCGTGGTGTACGGTCCCAGCAGCGGCGGCAGCTTCC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000052650.4 ENSMUST00000125410.2 ENSMUST00000168043.2 |
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| CDS GCA 72 bp | GGCTCTGGCGCTGCAGAGGGTCGTAGCCGTAGAAGTTaGCGGGGTCGCCGTGGCACGCCACGGCGCACGGGT | + |
|
Preference number: 6 (lower is better) Translates to: GSGAAEGRSRRS*RGRRGTPRRTG Trigger: ACCCGTGCGCCGTGGCGTGCCACGGCGACCCCGGCAACTTCTACGGCTACGACCCTCTGCAGCGCCAGAGCC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000052650.4 ENSMUST00000125410.2 ENSMUST00000168043.2 |
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| CDS GCA 72 bp | CGGCCTCCTCGCCCAGGCCGCTGGCTGCCGCGAGCTTaGAGTCTGCGTACTGCACCAGGTCTGGATCCTGCG | + |
|
Preference number: 6 (lower is better) Translates to: RPPRPGRWLPRA*SLRTAPGLDPA Trigger: CGCAGGATCCAGACCTGGTGCAGTACGCAGACTGCAAGCTCGCGGCAGCCAGCGGCCTGGGCGAGGAGGCCG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000052650.4 ENSMUST00000125410.2 ENSMUST00000168043.2 |
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| CDS GCA 72 bp | CTCAGACCCCTCGGCCTCCTCGCCCAGGCCGCTGGCTaGCGCGAGCTTGCAGTCTGCGTACTGCACCAGGTC | + |
|
Preference number: 6 (lower is better) Translates to: LRPLGLLAQAAG*RELAVCVLHQV Trigger: GACCTGGTGCAGTACGCAGACTGCAAGCTCGCGGCAGCCAGCGGCCTGGGCGAGGAGGCCGAGGGGTCTGAG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000052650.4 ENSMUST00000125410.2 ENSMUST00000168043.2 |
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| CDS GCA 72 bp | CGCATCCAGGGAAAGAGCTGTGTGGGCGACGGGCTCTaGTCAGACCCCTCGGCCTCCTCGCCCAGGCCGCTG | + |
|
Preference number: 6 (lower is better) Translates to: RIQGKSCVGDGL*SDPSASSPRPL Trigger: CAGCGGCCTGGGCGAGGAGGCCGAGGGGTCTGAGCAGAGCCCGTCGCCCACACAGCTCTTTCCCTGGATGCG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000052650.4 ENSMUST00000125410.2 ENSMUST00000168043.2 |
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| CDS CAA 90 bp | TCAGACCCCTCGGCCTCCTCGCCCAGGCCGCTGGCTGCCGCGAGCTaGCAGTCTGCGTACTGCACCAGGTCTGGATCCTGCGCACCGAAC | + |
|
Preference number: 6 (lower is better) Translates to: SDPSASSPRPLAAAS*QSAYCTRSGSCAPN Trigger: GTTCGGTGCGCAGGATCCAGACCTGGTGCAGTACGCAGACTGCAAGCTCGCGGCAGCCAGCGGCCTGGGCGAGGAGGCCGAGGGGTCTGA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000052650.4 ENSMUST00000125410.2 ENSMUST00000168043.2 |
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| CDS GCA 72 bp | CCTGGATTTGCGAAGGGTGCTGGAAGCTGCCGCCGCTaGTGGGACCGTACACCACGGTGGGTCGGCCGCCCA | + |
|
Preference number: 6 (lower is better) Translates to: PGFAKGAGSCRR*WDRTPRWVGRP Trigger: TGGGCGGCCGACCCACCGTGGTGTACGGTCCCAGCAGCGGCGGCAGCTTCCAGCACCCTTCGCAAATCCAGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000052650.4 ENSMUST00000125410.2 ENSMUST00000168043.2 |
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| CDS CCA 72 bp | TCTGCTCAGACCCCTCGGCCTCCTCGCCCAGGCCGCTaGCTGCCGCGAGCTTGCAGTCTGCGTACTGCACCA | + |
|
Preference number: 6 (lower is better) Translates to: SAQTPRPPRPGR*LPRACSLRTAP Trigger: TGGTGCAGTACGCAGACTGCAAGCTCGCGGCAGCCAGCGGCCTGGGCGAGGAGGCCGAGGGGTCTGAGCAGA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000052650.4 ENSMUST00000125410.2 ENSMUST00000168043.2 |
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| CDS CCA 72 bp | CGGCGGCTTGAGGGCGCATCCAGGGAAAGAGCTGTGTaGGCGACGGGCTCTGCTCAGACCCCTCGGCCTCCT | + |
|
Preference number: 6 (lower is better) Translates to: RRLEGASRERAV*ATGSAQTPRPP Trigger: AGGAGGCCGAGGGGTCTGAGCAGAGCCCGTCGCCCACACAGCTCTTTCCCTGGATGCGCCCTCAAGCCGCCG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125410.2 |
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| CDS CAA 72 bp | TCGGCCTCCTCGCCCAGGCCGCTGGCTGCCGCGAGCTaGCAGTCTGCGTACTGCACCAGGTCTGGATCCTGC | + |
|
Preference number: 6 (lower is better) Translates to: SASSPRPLAAAS*QSAYCTRSGSC Trigger: GCAGGATCCAGACCTGGTGCAGTACGCAGACTGCAAGCTCGCGGCAGCCAGCGGCCTGGGCGAGGAGGCCGA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000052650.4 ENSMUST00000125410.2 ENSMUST00000168043.2 |
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| CDS GCA 72 bp | CTCGCCCAGGCCGCTGGCTGCCGCGAGCTTGCAGTCTaGGTACTGCACCAGGTCTGGATCCTGCGCACCGAA | + |
|
Preference number: 6 (lower is better) Translates to: LAQAAGCRELAV*VLHQVWILRTE Trigger: TTCGGTGCGCAGGATCCAGACCTGGTGCAGTACGCAGACTGCAAGCTCGCGGCAGCCAGCGGCCTGGGCGAG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000052650.4 ENSMUST00000125410.2 ENSMUST00000168043.2 |
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| CDS CCA 72 bp | CGGCTGCTTGAGGGCGCATCCAGGGAAAGAGCTGTGTaGGCGACGGGCTCTGCTCAGACCCCTCGGCCTCCT | + |
|
Preference number: 6 (lower is better) Translates to: RLLEGASRERAV*ATGSAQTPRPP Trigger: AGGAGGCCGAGGGGTCTGAGCAGAGCCCGTCGCCCACACAGCTCTTTCCCTGGATGCGCCCTCAAGCAGCCG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052650.4 ENSMUST00000168043.2 |
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| CDS GCA 72 bp | AGGCCGCTGGCTGCCGCGAGCTTGCAGTCTGCGTACTaGACCAGGTCTGGATCCTGCGCACCGAACAGGCTC | + |
|
Preference number: 6 (lower is better) Translates to: RPLAAASLQSAY*TRSGSCAPNRL Trigger: GAGCCTGTTCGGTGCGCAGGATCCAGACCTGGTGCAGTACGCAGACTGCAAGCTCGCGGCAGCCAGCGGCCT 67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000052650.4 ENSMUST00000125410.2 ENSMUST00000168043.2 |
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| CDS CCA 72 bp | ACGCCACGGCGCACGGGTTCTGCTGGTAGGGAGCTGTaGACAGCGACGATGGCCCGTGGTAGAACTCCTGGA | + |
|
Preference number: 6 (lower is better) Translates to: TPRRTGSAGREL*TATMARGRTPG Trigger: TCCAGGAGTTCTACCACGGGCCATCGTCGCTGTCCACAGCTCCCTACCAGCAGAACCCGTGCGCCGTGGCGT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000052650.4 ENSMUST00000125410.2 ENSMUST00000168043.2 |
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| CDS CCA 72 bp | TGCCGCGAGCTTGCAGTCTGCGTACTGCACCAGGTCTaGATCCTGCGCACCGAACAGGCTCTGGCGCTGCAG | + |
|
Preference number: 6 (lower is better) Translates to: CRELAVCVLHQV*ILRTEQALALQ Trigger: CTGCAGCGCCAGAGCCTGTTCGGTGCGCAGGATCCAGACCTGGTGCAGTACGCAGACTGCAAGCTCGCGGCA 65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000052650.4 ENSMUST00000125410.2 ENSMUST00000168043.2 |
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| CDS GCA 72 bp | AGCTTGCAGTCTGCGTACTGCACCAGGTCTGGATCCTaGGCACCGAACAGGCTCTGGCGCTGCAGAGGGTCG | + |
|
Preference number: 6 (lower is better) Translates to: SLQSAYCTRSGS*APNRLWRCRGS Trigger: CGACCCTCTGCAGCGCCAGAGCCTGTTCGGTGCGCAGGATCCAGACCTGGTGCAGTACGCAGACTGCAAGCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000052650.4 ENSMUST00000125410.2 ENSMUST00000168043.2 |
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| CDS CCA 72 bp | CGGGTTCTGCTGGTAGGGAGCTGTGGACAGCGACGATaGCCCGTGGTAGAACTCCTGGATTTGCGAAGGGTG | + |
|
Preference number: 6 (lower is better) Translates to: RVLLVGSCGQRR*PVVELLDLRRV Trigger: CACCCTTCGCAAATCCAGGAGTTCTACCACGGGCCATCGTCGCTGTCCACAGCTCCCTACCAGCAGAACCCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000052650.4 ENSMUST00000125410.2 ENSMUST00000168043.2 |
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