Pregenerated sensors for HOXB7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038721Ensembl transcript IDs: ENSMUST00000049352.8
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | AAAGCCACAGAACAGGTAGATAATGTCCTTCCGATACTGTACAAAAACAGACAATTCAGTTCCCATAATTaGGTTCTCCCTCTCTTCGCT | + |
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Preference number: 2 (lower is better) Translates to: KATEQVDNVLPILYKNRQFSSHN*VLPLFA Trigger: AGCGAAGAGAGGGAGAACCCAATTATGGGAACTGAA...TTGTCTGTTTTTGTACAGTATCGGAAGGACATTATCTACCTGTTCTGTGGCTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049352.8 |
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| 3UTR-3UTR TCA 90 bp | CCTTCCGATACTGTACAAAAACAGACAACACACTTTCCCATAGGTAGTATATTTGTTTGCCCCTTTATTTaGGTTTCATGCTTCAGTTCC | + |
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Preference number: 2 (lower is better) Translates to: PSDTVQKQTTHFPIGSIFVCPFI*VSCFSS Trigger: GGAACTGAAGCATGAAACTCAAATAAAGGGGCAAAC...AAATATACTACCTATGGGAAAGTGTGTTGTCTGTTTTTGTACAGTATCGGAAGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049352.8 |
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| 3UTR TCA 72 bp | TATTTTCCATCCTTCAGATATACAGAAAGAGGCTCGTaGATAGGACCTAGAAACAGCAGCCAAAATGCACCA | + |
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Preference number: 3 (lower is better) Translates to: YFPSFRYTERGS*IGPRNSSQNAP Trigger: TGGTGCATTTTGGCTGCTGTTTCTAGGTCCTATTCACGAGCCTCTTTCTGTATATCTGAAGGATGGAAAATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049352.8 |
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| 3UTR-3UTR CAA 90 bp | AAAGCCACAGAACAGGTAGATAATGTCCTTCCGATACTGTACAAAAACAGACAAAGTTTGCCCCTTTATTaGAGTTTCATGCTTCAGTTC | + |
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Preference number: 3 (lower is better) Translates to: KATEQVDNVLPILYKNRQSLPLY*SFMLQF Trigger: GAACTGAAGCATGAAACTCAAATAAAGGGGCAAACT...TTGTCTGTTTTTGTACAGTATCGGAAGGACATTATCTACCTGTTCTGTGGCTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049352.8 |
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| CDS-3UTR GCA 90 bp | TCATGCTTCAGTTCCCATAATTGGGTTCTCCCTCTCTTCGCTTTCCTCCTCTTGAGGAGCGCCCGGACCTaGTCCATAGCCCGGGCGCTG | + |
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Preference number: 4 (lower is better) Translates to: SCFSSHNWVLPLFAFLLLRSART*SIARAL Trigger: CAGCGCCCGGGCTATGGAGCAGGTCCGGGCGCTCCT...CAAGAGGAGGAAAGCGAAGAGAGGGAGAACCCAATTATGGGAACTGAAGCATGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049352.8 |
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| CDS-3UTR GCA 90 bp | CATGCTTCAGTTCCCATAATTGGGTTCTCCCTCTCTTCGCTTTCCTCCTCTTGGAAGTCCGAGTCCCTCTaGTCCTTGGCGCCAGCCGCC | + |
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Preference number: 4 (lower is better) Translates to: HASVPIIGFSLSSLSSSWKSESL*SLAPAA Trigger: GGCGGCTGGCGCCAAGGAGCAGAGGGACTCGGACTT...CCAAGAGGAGGAAAGCGAAGAGAGGGAGAACCCAATTATGGGAACTGAAGCATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049352.8 |
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| CDS-3UTR CCA 90 bp | TCATGCTTCAGTTCCCATAATTGGGTTCTCCCTCTCTTCGCTTTCCTCCTCTTGGCTTCCGCCTTGTCCTaGCCGGTGGTTCCCGGTCCT | + |
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Preference number: 4 (lower is better) Translates to: SCFSSHNWVLPLFAFLLLASALS*PVVPGP Trigger: AGGACCGGGAACCACCGGCCAGGACAAGGCGGAAGC...CAAGAGGAGGAAAGCGAAGAGAGGGAGAACCCAATTATGGGAACTGAAGCATGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049352.8 |
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| CDS-3UTR CCA 90 bp | AAAGCCACAGAACAGGTAGATAATGTCCTTCCGATACTGTACAAAAACAGACAATGGCGCCAGCCGCCTTaGCGGGGTCGCCCGGACACA | + |
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Preference number: 4 (lower is better) Translates to: KATEQVDNVLPILYKNRQWRQPP*RGRPDT Trigger: TGTGTCCGGGCGACCCCGCCAAGGCGGCTGGCGCCA...TTGTCTGTTTTTGTACAGTATCGGAAGGACATTATCTACCTGTTCTGTGGCTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049352.8 |
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| CDS-3UTR TCA 90 bp | TTTGCCCCTTTATTTGAGTTTCATGCTTCAGTTCCCATAATTGGGTTCTCCCTCCTTTCGGTCAGGCCCTaGGCTTCGCATCCAGGGGTA | + |
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Preference number: 4 (lower is better) Translates to: FAPLFEFHASVPIIGFSLLSVRP*ASHPGV Trigger: TACCCCTGGATGCGAAGCTCAGGGCCTGACCGAAAG...GAGGGAGAACCCAATTATGGGAACTGAAGCATGAAACTCAAATAAAGGGGCAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049352.8 |
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| CDS-3UTR GCA 90 bp | ACAGCTTCAAAGAGGGCTTACAAAACAGCAAGATTTTACAAAGACCTTACTAGCACCCCGGAGAGGTTCTaGTCAAAGGGCGCGCAGTGC | + |
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Preference number: 4 (lower is better) Translates to: TASKRAYKTARFYKDLTSTPERF*SKGAQC Trigger: GCACTGCGCGCCCTTTGAGCAGAACCTCTCCGGGGT...GCTAGTAAGGTCTTTGTAAAATCTTGCTGTTTTGTAAGCCCTCTTTGAAGCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049352.8 |
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| CDS-3UTR CCA 90 bp | AAAGCCACAGAACAGGTAGATAATGTCCTTCCGATACTGTACAAAAACAGACAACCGGGCGCTGGGGGTTaGAAGCAAAGGCGCAAGAAG | + |
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Preference number: 4 (lower is better) Translates to: KATEQVDNVLPILYKNRQPGAGG*KQRRKK Trigger: CTTCTTGCGCCTTTGCTTCCAACCCCCAGCGCCCGG...TTGTCTGTTTTTGTACAGTATCGGAAGGACATTATCTACCTGTTCTGTGGCTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000049352.8 |
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| CDS-3UTR TCA 90 bp | CCTTCCGATACTGTACAAAAACAGACAACACACTTTCCCATAGGTAGTATATTTGCGCGCAGTGCATGTTaGAGGAACTCGGTTCGAGCC | + |
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Preference number: 4 (lower is better) Translates to: PSDTVQKQTTHFPIGSIFARSAC*RNSVRA Trigger: GGCTCGAACCGAGTTCCTTCAACATGCACTGCGCGC...AAATATACTACCTATGGGAAAGTGTGTTGTCTGTTTTTGTACAGTATCGGAAGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049352.8 |
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| CDS-3UTR GCA 90 bp | AAAGACAGCTTCAAAGAGGGCTTACAAAACAGCAAGATTTTACAAAGACCTTACTCAAAGGGCGCGCAGTaGATGTTGAAGGAACTCGGT | + |
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Preference number: 4 (lower is better) Translates to: KDSFKEGLQNSKILQRPYSKGAQ*MLKELG Trigger: ACCGAGTTCCTTCAACATGCACTGCGCGCCCTTTGA...GTAAGGTCTTTGTAAAATCTTGCTGTTTTGTAAGCCCTCTTTGAAGCTGTCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049352.8 |
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| CDS-3UTR GCA 90 bp | AAAGACAGCTTCAAAGAGGGCTTACAAAACAGCAAGATTTTACAAAGACCTTACAGCGAAAACCGAACTTaGGGCTGGATATTTAGAAAA | + |
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Preference number: 4 (lower is better) Translates to: KDSFKEGLQNSKILQRPYSENRT*GWIFRK Trigger: TTTTCTAAATATCCAGCCGCAAGTTCGGTTTTCGCT...GTAAGGTCTTTGTAAAATCTTGCTGTTTTGTAAGCCCTCTTTGAAGCTGTCTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049352.8 |
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| CDS GCA 90 bp | GGAGTACAGACCCTGCACCGAGGCGGAGAAAGGAGCGCCCGGACCTaGTCCATAGCCCGGGCGCTGGGGGTTGGAAGCAAAGGCGCAAGA | + |
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Preference number: 5 (lower is better) Translates to: GVQTLHRGGERSART*SIARALGVGSKGAR Trigger: TCTTGCGCCTTTGCTTCCAACCCCCAGCGCCCGGGCTATGGAGCAGGTCCGGGCGCTCCTTTCTCCGCCTCGGTGCAGGGTCTGTACTCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049352.8 |
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| CDS GCA 90 bp | CCAGCCGCCTTGGCGGGGTCGCCCGGACACACCCCGGAGAGGTTCTaGTCAAAGGGCGCGCAGTGCATGTTGAAGGAACTCGGTTCGAGC | + |
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Preference number: 5 (lower is better) Translates to: PAALAGSPGHTPERF*SKGAQCMLKELGSS Trigger: GCTCGAACCGAGTTCCTTCAACATGCACTGCGCGCCCTTTGAGCAGAACCTCTCCGGGGTGTGTCCGGGCGACCCCGCCAAGGCGGCTGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049352.8 |
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| CDS TCA 90 bp | GACACACCCCGGAGAGGTTCTGCTCAAAGGGCGCGCAGTGCATGTTaGAGGAACTCGGTTCGAGCCCGTAGCCGGCCGCATAGACGCCAG | + |
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Preference number: 5 (lower is better) Translates to: DTPRRGSAQRARSAC*RNSVRARSRPHRRQ Trigger: CTGGCGTCTATGCGGCCGGCTACGGGCTCGAACCGAGTTCCTTCAACATGCACTGCGCGCCCTTTGAGCAGAACCTCTCCGGGGTGTGTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049352.8 |
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| CDS CCA 90 bp | AGAAAGGAGCGCCCGGACCTGCTCCATAGCCCGGGCGCTGGGGGTTaGAAGCAAAGGCGCAAGAAGTTTGTTCGGGGAAGGCTCCTGGAG | + |
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Preference number: 5 (lower is better) Translates to: RKERPDLLHSPGAGG*KQRRKKFVRGRLLE Trigger: CTCCAGGAGCCTTCCCCGAACAAACTTCTTGCGCCTTTGCTTCCAACCCCCAGCGCCCGGGCTATGGAGCAGGTCCGGGCGCTCCTTTCT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049352.8 |
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| CDS-3UTR CAA 90 bp | TCATGCTTCAGTTCCCATAATTGGGTTCTCCCTCTCTTCGCTTTCCTCCTCTTGGAGTCCCTCTGCTCCTaGGCGCCAGCCGCCTTGGCG | + |
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Preference number: 5 (lower is better) Translates to: SCFSSHNWVLPLFAFLLLESLCS*APAALA Trigger: CGCCAAGGCGGCTGGCGCCAAGGAGCAGAGGGACTC...CAAGAGGAGGAAAGCGAAGAGAGGGAGAACCCAATTATGGGAACTGAAGCATGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049352.8 |
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| CDS-3UTR CAA 90 bp | TCATGCTTCAGTTCCCATAATTGGGTTCTCCCTCTCTTCGCTTTCCTCCTCTTGCCCGGGCGCTGGGGGTaGGAAGCAAAGGCGCAAGAA | + |
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Preference number: 5 (lower is better) Translates to: SCFSSHNWVLPLFAFLLLPGRWG*EAKAQE Trigger: TTCTTGCGCCTTTGCTTCCAACCCCCAGCGCCCGGG...CAAGAGGAGGAAAGCGAAGAGAGGGAGAACCCAATTATGGGAACTGAAGCATGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049352.8 |
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| CDS-3UTR CAA 90 bp | AAAGCCACAGAACAGGTAGATAATGTCCTTCCGATACTGTACAAAAACAGACAATTGGCGCCAGCCGCCTaGGCGGGGTCGCCCGGACAC | + |
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Preference number: 5 (lower is better) Translates to: KATEQVDNVLPILYKNRQLAPAA*AGSPGH Trigger: GTGTCCGGGCGACCCCGCCAAGGCGGCTGGCGCCAA...TTGTCTGTTTTTGTACAGTATCGGAAGGACATTATCTACCTGTTCTGTGGCTTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049352.8 |
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| CDS-3UTR CAA 90 bp | AAAGACAGCTTCAAAGAGGGCTTACAAAACAGCAAGATTTTACAAAGACCTTACTCCTCCGCTTCCGCCTaGTCCTGGCCGGTGGTTCCC | + |
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Preference number: 5 (lower is better) Translates to: KDSFKEGLQNSKILQRPYSSASA*SWPVVP Trigger: GGGAACCACCGGCCAGGACAAGGCGGAAGCGGAGGA...GTAAGGTCTTTGTAAAATCTTGCTGTTTTGTAAGCCCTCTTTGAAGCTGTCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049352.8 |
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| CDS-3UTR CAA 90 bp | ACAGCTTCAAAGAGGGCTTACAAAACAGCAAGATTTTACAAAGACCTTACTAGCGGCGCGCAGTGCATGTaGAAGGAACTCGGTTCGAGC | + |
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Preference number: 5 (lower is better) Translates to: TASKRAYKTARFYKDLTSGAQCM*KELGSS Trigger: GCTCGAACCGAGTTCCTTCAACATGCACTGCGCGCC...GCTAGTAAGGTCTTTGTAAAATCTTGCTGTTTTGTAAGCCCTCTTTGAAGCTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049352.8 |
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| CDS GCA 72 bp | CGGAAGTTACTCTCGGCCGCCAAGTCCGAGTCCCTCTaGTCCTTGGCGCCAGCCGCCTTGGCGGGGTCGCCC | + |
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Preference number: 6 (lower is better) Translates to: RKLLSAAKSESL*SLAPAALAGSP Trigger: GGGCGACCCCGCCAAGGCGGCTGGCGCCAAGGAGCAGAGGGACTCGGACTTGGCGGCCGAGAGTAACTTCCG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049352.8 |
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| CDS CAA 90 bp | ATCCGGAAGTTACTCTCGGCCGCCAAGTCCGAGTCCCTCTGCTCCTaGGCGCCAGCCGCCTTGGCGGGGTCGCCCGGACACACCCCGGAG | + |
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Preference number: 6 (lower is better) Translates to: IRKLLSAAKSESLCS*APAALAGSPGHTPE Trigger: CTCCGGGGTGTGTCCGGGCGACCCCGCCAAGGCGGCTGGCGCCAAGGAGCAGAGGGACTCGGACTTGGCGGCCGAGAGTAACTTCCGGAT 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049352.8 |
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| CDS GCA 72 bp | ACCCTGCACCGAGGCGGAGAAAGGAGCGCCCGGACCTaGTCCATAGCCCGGGCGCTGGGGGTTGGAAGCAAA | + |
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Preference number: 6 (lower is better) Translates to: TLHRGGERSART*SIARALGVGSK Trigger: TTTGCTTCCAACCCCCAGCGCCCGGGCTATGGAGCAGGTCCGGGCGCTCCTTTCTCCGCCTCGGTGCAGGGT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049352.8 |
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| CDS CCA 72 bp | CGCCCGGACCTGCTCCATAGCCCGGGCGCTGGGGGTTaGAAGCAAAGGCGCAAGAAGTTTGTTCGGGGAAGG | + |
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Preference number: 6 (lower is better) Translates to: RPDLLHSPGAGG*KQRRKKFVRGR Trigger: CCTTCCCCGAACAAACTTCTTGCGCCTTTGCTTCCAACCCCCAGCGCCCGGGCTATGGAGCAGGTCCGGGCG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049352.8 |
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| CDS GCA 72 bp | TTGGCGGGGTCGCCCGGACACACCCCGGAGAGGTTCTaGTCAAAGGGCGCGCAGTGCATGTTGAAGGAACTC | + |
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Preference number: 6 (lower is better) Translates to: LAGSPGHTPERF*SKGAQCMLKEL Trigger: GAGTTCCTTCAACATGCACTGCGCGCCCTTTGAGCAGAACCTCTCCGGGGTGTGTCCGGGCGACCCCGCCAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049352.8 |
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| CDS TCA 72 bp | CGGAGAGGTTCTGCTCAAAGGGCGCGCAGTGCATGTTaGAGGAACTCGGTTCGAGCCCGTAGCCGGCCGCAT | + |
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Preference number: 6 (lower is better) Translates to: RRGSAQRARSAC*RNSVRARSRPH Trigger: ATGCGGCCGGCTACGGGCTCGAACCGAGTTCCTTCAACATGCACTGCGCGCCCTTTGAGCAGAACCTCTCCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049352.8 |
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| CDS CCA 72 bp | AGCAAAGGCGCAAGAAGTTTGTTCGGGGAAGGCTCCTaGAGCGAAAACCGAACTTGCGGCTGGATATTTAGA | + |
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Preference number: 6 (lower is better) Translates to: SKGARSLFGEGS*SENRTCGWIFR Trigger: TCTAAATATCCAGCCGCAAGTTCGGTTTTCGCTCCAGGAGCCTTCCCCGAACAAACTTCTTGCGCCTTTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049352.8 |
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