Pregenerated sensors for HOXB6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000000690Ensembl transcript IDs: ENSMUST00000000704.6, ENSMUST00000173432.3
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGCCAAGGTGGGTTCTTCGGGGGAGGGAGGAGGCGCTGGGGGTGCTaGGTGGGCATCCGCCAAGCGCCCAGGAAGAGCTCTGCAGAAGGG | + |
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Preference number: 1 (lower is better) Translates to: GQGGFFGGGRRRWGC*VGIRQAPRKSSAEG Trigger: CCCTTCTGCAGAGCTCTTCCTGGGCGCTTGGCGGATGCCCACCCAGCACCCCCAGCGCCTCCTCCCTCCCCCGAAGAACCCACCTTGGCC 70% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| 3UTR TCA 90 bp | AGGGAGTCTTTCAGGTCCCTGCTGAGGGGACAGCGAATCTACCATTaGACCGTGCACGGGGGACATGGACGAAATGAGACTCGACAAGGA | + |
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Preference number: 1 (lower is better) Translates to: RESFRSLLRGQRIYH*TVHGGHGRNETRQG Trigger: TCCTTGTCGAGTCTCATTTCGTCCATGTCCCCCGTGCACGGTTCAATGGTAGATTCGCTGTCCCCTCAGCAGGGACCTGAAAGACTCCCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| 3UTR CCA 90 bp | CTCCTCTTCTTCCTTCTAGGTAGTATGTGCTCCTTCCAGTGGCTTTaGGGAGGGGGTAGGAGAGACAAGTCTGGGGTCAGGGAGTCTTTC | + |
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Preference number: 1 (lower is better) Translates to: LLFFLLGSMCSFQWL*GGGRRDKSGVRESF Trigger: GAAAGACTCCCTGACCCCAGACTTGTCTCTCCTACCCCCTCCCCAAAGCCACTGGAAGGAGCACATACTACCTAGAAGGAAGAAGAGGAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| 3UTR TCA 90 bp | CGACAAGGACATGAGCATTCTGCTCTGCTTCCAGGAGACATCAAGTaGGTCCGATTCTCAGTTCTCACCAGAGAGCCTGATGAGGCCAAG | + |
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Preference number: 1 (lower is better) Translates to: RQGHEHSALLPGDIK*VRFSVLTREPDEAK Trigger: CTTGGCCTCATCAGGCTCTCTGGTGAGAACTGAGAATCGGACTCACTTGATGTCTCCTGGAAGCAGAGCAGAATGCTCATGTCCTTGTCG 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| 3UTR GCA 90 bp | GACATGGACGAAATGAGACTCGACAAGGACATGAGCATTCTGCTCTaGTTCCAGGAGACATCAAGTGAGTCCGATTCTCAGTTCTCACCA | + |
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Preference number: 1 (lower is better) Translates to: DMDEMRLDKDMSILL*FQETSSESDSQFSP Trigger: TGGTGAGAACTGAGAATCGGACTCACTTGATGTCTCCTGGAAGCAGAGCAGAATGCTCATGTCCTTGTCGAGTCTCATTTCGTCCATGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| 3UTR-3UTR CCA 90 bp | GTCTTTCAGGTCCCTGCTGAGGGGACAGCGAATCTACCATTGAACCGTGCACGGCTGATGAGGCCAAGGTaGGTTCTTCGGGGGAGGGAG | + |
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Preference number: 2 (lower is better) Translates to: VFQVPAEGTANLPLNRARLMRPR*VLRGRE Trigger: CTCCCTCCCCCGAAGAACCCACCTTGGCCTCATCAG...CCGTGCACGGTTCAATGGTAGATTCGCTGTCCCCTCAGCAGGGACCTGAAAGAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| 3UTR-3UTR GCA 90 bp | ACGGGGGACATGGACGAAATGAGACTCGACAAGGACATGAGCATTCTGCTCTGCGCCCAGGAAGAGCTCTaGAGAAGGGGGCATCCAGGC | + |
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Preference number: 2 (lower is better) Translates to: TGDMDEMRLDKDMSILLCAQEEL*RRGHPG Trigger: GCCTGGATGCCCCCTTCTGCAGAGCTCTTCCTGGGC...GCAGAGCAGAATGCTCATGTCCTTGTCGAGTCTCATTTCGTCCATGTCCCCCGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| 3UTR GCA 72 bp | CTGGGTGGGCATCCGCCAAGCGCCCAGGAAGAGCTCTaGAGAAGGGGGCATCCAGGCAAGCACTGGGCCCTG | + |
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Preference number: 3 (lower is better) Translates to: LGGHPPSAQEEL*RRGHPGKHWAL Trigger: CAGGGCCCAGTGCTTGCCTGGATGCCCCCTTCTGCAGAGCTCTTCCTGGGCGCTTGGCGGATGCCCACCCAG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| 3UTR CCA 72 bp | CATCCAGGCAAGCACTGGGCCCTGCCCGTCGTGCTCTaGACAGCAAGTCCCCAGACTCCCCCGACCGCAGAG | + |
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Preference number: 3 (lower is better) Translates to: HPGKHWALPVVL*TASPQTPPTAE Trigger: CTCTGCGGTCGGGGGAGTCTGGGGACTTGCTGTCCAGAGCACGACGGGCAGGGCCCAGTGCTTGCCTGGATG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| 3UTR GCA 72 bp | TCTGCAGAAGGGGGCATCCAGGCAAGCACTGGGCCCTaGCCGTCGTGCTCTGGACAGCAAGTCCCCAGACTC | + |
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Preference number: 3 (lower is better) Translates to: SAEGGIQASTGP*PSCSGQQVPRL Trigger: GAGTCTGGGGACTTGCTGTCCAGAGCACGACGGGCAGGGCCCAGTGCTTGCCTGGATGCCCCCTTCTGCAGA 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| 3UTR CCA 72 bp | TCTCAGTTCTCACCAGAGAGCCTGATGAGGCCAAGGTaGGTTCTTCGGGGGAGGGAGGAGGCGCTGGGGGTG | + |
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Preference number: 3 (lower is better) Translates to: SQFSPESLMRPR*VLRGREEALGV Trigger: CACCCCCAGCGCCTCCTCCCTCCCCCGAAGAACCCACCTTGGCCTCATCAGGCTCTCTGGTGAGAACTGAGA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| 3UTR TCA 72 bp | TTCAGGTCCCTGCTGAGGGGACAGCGAATCTACCATTaGACCGTGCACGGGGGACATGGACGAAATGAGACT | + |
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Preference number: 3 (lower is better) Translates to: FRSLLRGQRIYH*TVHGGHGRNET Trigger: AGTCTCATTTCGTCCATGTCCCCCGTGCACGGTTCAATGGTAGATTCGCTGTCCCCTCAGCAGGGACCTGAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| 3UTR CCA 72 bp | TTCCTTCTAGGTAGTATGTGCTCCTTCCAGTGGCTTTaGGGAGGGGGTAGGAGAGACAAGTCTGGGGTCAGG | + |
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Preference number: 3 (lower is better) Translates to: FLLGSMCSFQWL*GGGRRDKSGVR Trigger: CCTGACCCCAGACTTGTCTCTCCTACCCCCTCCCCAAAGCCACTGGAAGGAGCACATACTACCTAGAAGGAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| 3UTR GCA 72 bp | CTTCTGAGGCTCCTCTTCTTCCTTCTAGGTAGTATGTaGTCCTTCCAGTGGCTTTGGGGAGGGGGTAGGAGA | + |
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Preference number: 3 (lower is better) Translates to: LLRLLFFLLGSM*SFQWLWGGGRR Trigger: TCTCCTACCCCCTCCCCAAAGCCACTGGAAGGAGCACATACTACCTAGAAGGAAGAAGAGGAGCCTCAGAAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| 3UTR TCA 72 bp | CATGAGCATTCTGCTCTGCTTCCAGGAGACATCAAGTaGGTCCGATTCTCAGTTCTCACCAGAGAGCCTGAT | + |
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Preference number: 3 (lower is better) Translates to: HEHSALLPGDIK*VRFSVLTREPD Trigger: ATCAGGCTCTCTGGTGAGAACTGAGAATCGGACTCACTTGATGTCTCCTGGAAGCAGAGCAGAATGCTCATG 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| 3UTR GCA 72 bp | GAAATGAGACTCGACAAGGACATGAGCATTCTGCTCTaGTTCCAGGAGACATCAAGTGAGTCCGATTCTCAG | + |
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Preference number: 3 (lower is better) Translates to: EMRLDKDMSILL*FQETSSESDSQ Trigger: CTGAGAATCGGACTCACTTGATGTCTCCTGGAAGCAGAGCAGAATGCTCATGTCCTTGTCGAGTCTCATTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| CDS-3UTR CCA 90 bp | GCCCGTCGTGCTCTGGACAGCAAGTCCCCAGACTCCCCCGACCGCAGAGCCTTCTTGCGCGGCTCGGGGTaGAACGGGGGCGGCTCGTCG | + |
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Preference number: 4 (lower is better) Translates to: ARRALDSKSPDSPDRRAFLRGSG*NGGGSS Trigger: CGACGAGCCGCCCCCGTTCCACCCCGAGCCGCGCAA...GAAGGCTCTGCGGTCGGGGGAGTCTGGGGACTTGCTGTCCAGAGCACGACGGGC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| CDS-3UTR GCA 90 bp | GCCCGTCGTGCTCTGGACAGCAAGTCCCCAGACTCCCCCGACCGCAGAGCCTTCGTGCGCAGTCGGACTTaGGCGGCTCGGGGTGGAACG | + |
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Preference number: 4 (lower is better) Translates to: ARRALDSKSPDSPDRRAFVRSRT*AARGGT Trigger: CGTTCCACCCCGAGCCGCGCAAGTCCGACTGCGCAC...GAAGGCTCTGCGGTCGGGGGAGTCTGGGGACTTGCTGTCCAGAGCACGACGGGC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| CDS-3UTR GCA 90 bp | GCCCGTCGTGCTCTGGACAGCAAGTCCCCAGACTCCCCCGACCGCAGAGCCTTCCCCAGGAAGGACTCCTaGCCGCTGGCCAGAGTGACG | + |
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Preference number: 4 (lower is better) Translates to: ARRALDSKSPDSPDRRAFPRKDS*PLARVT Trigger: CGTCACTCTGGCCAGCGGGCAGGAGTCCTTCCTGGG...GAAGGCTCTGCGGTCGGGGGAGTCTGGGGACTTGCTGTCCAGAGCACGACGGGC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| CDS-3UTR GCA 90 bp | GCCCAGGAAGAGCTCTGCAGAAGGGGGCATCCAGGCAAGCACTGGGCCCTGCCCCCCAGGAAGGACTCCTaGCCGCTGGCCAGAGTGACG | + |
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Preference number: 4 (lower is better) Translates to: AQEELCRRGHPGKHWALPPRKDS*PLARVT Trigger: CGTCACTCTGGCCAGCGGGCAGGAGTCCTTCCTGGG...GGGCAGGGCCCAGTGCTTGCCTGGATGCCCCCTTCTGCAGAGCTCTTCCTGGGC 68% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| CDS-3UTR GCA 90 bp | GCAGAAGGGGGCATCCAGGCAAGCACTGGGCCCTGCCCGTCGTGCTCTGGACAGGTCAGGCACAGGGCGTaGGCGATCTCTATGCGCCGC | + |
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Preference number: 4 (lower is better) Translates to: AEGGIQASTGPCPSCSGQVRHRA*AISMRR Trigger: GCGGCGCATAGAGATCGCGCACGCCCTGTGCCTGAC...CTGTCCAGAGCACGACGGGCAGGGCCCAGTGCTTGCCTGGATGCCCCCTTCTGC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| CDS-3UTR GCA 90 bp | GCCAAGCGCCCAGGAAGAGCTCTGCAGAAGGGGGCATCCAGGCAAGCACTGGGCCACGCTCTTGTCCTGTaGGCAGTCGGACTTGCGCGG | + |
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Preference number: 4 (lower is better) Translates to: AKRPGRALQKGASRQALGHALVL*AVGLAR Trigger: CCGCGCAAGTCCGACTGCGCACAGGACAAGAGCGTG...GCCCAGTGCTTGCCTGGATGCCCCCTTCTGCAGAGCTCTTCCTGGGCGCTTGGC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| CDS-3UTR GCA 90 bp | GTGGGCATCCGCCAAGCGCCCAGGAAGAGCTCTGCAGAAGGGGGCATCCAGGCAGGCGTGGAGCACTTCTaGTCCTCGGTCTCTCCGAAC | + |
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Preference number: 4 (lower is better) Translates to: VGIRQAPRKSSAEGGIQAGVEHF*SSVSPN Trigger: GTTCGGAGAGACCGAGGAGCAGAAGTGCTCCACGCC...TGCCTGGATGCCCCCTTCTGCAGAGCTCTTCCTGGGCGCTTGGCGGATGCCCAC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| CDS-3UTR GCA 90 bp | CAGGTCCCTGCTGAGGGGACAGCGAATCTACCATTGAACCGTGCACGGGGGACAGTCAGGCACAGGGCGTaGGCGATCTCTATGCGCCGC | + |
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Preference number: 4 (lower is better) Translates to: QVPAEGTANLPLNRARGTVRHRA*AISMRR Trigger: GCGGCGCATAGAGATCGCGCACGCCCTGTGCCTGAC...TGTCCCCCGTGCACGGTTCAATGGTAGATTCGCTGTCCCCTCAGCAGGGACCTG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| CDS-3UTR TCA 90 bp | TCTCAGTTCTCACCAGAGAGCCTGATGAGGCCAAGGTGGGTTCTTCGGGGGAGGGCCCGCTGGCCAGAGTaGCGGGGAAGGTGGAGTTCA | + |
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Preference number: 4 (lower is better) Translates to: SQFSPESLMRPRWVLRGRARWPE*RGRWSS Trigger: TGAACTCCACCTTCCCCGTCACTCTGGCCAGCGGGC...CCTCCCCCGAAGAACCCACCTTGGCCTCATCAGGCTCTCTGGTGAGAACTGAGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| CDS-3UTR GCA 90 bp | CAGGTCCCTGCTGAGGGGACAGCGAATCTACCATTGAACCGTGCACGGGGGACACACGCTCTTGTCCTGTaGGCAGTCGGACTTGCGCGG | + |
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Preference number: 4 (lower is better) Translates to: QVPAEGTANLPLNRARGTHALVL*AVGLAR Trigger: CCGCGCAAGTCCGACTGCGCACAGGACAAGAGCGTG...TGTCCCCCGTGCACGGTTCAATGGTAGATTCGCTGTCCCCTCAGCAGGGACCTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| CDS-3UTR CCA 90 bp | TCTCAGTTCTCACCAGAGAGCCTGATGAGGCCAAGGTGGGTTCTTCGGGGGAGGGTAGCCGCCGCCGGCTaGTGGGTAATAGGAGGACGC | + |
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Preference number: 4 (lower is better) Translates to: SQFSPESLMRPRWVLRGRVAAAG*WVIGGR Trigger: GCGTCCTCCTATTACCCACCAGCCGGCGGCGGCTAC...CCTCCCCCGAAGAACCCACCTTGGCCTCATCAGGCTCTCTGGTGAGAACTGAGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| CDS-3UTR CCA 90 bp | CAGGTCCCTGCTGAGGGGACAGCGAATCTACCATTGAACCGTGCACGGGGGACAACGGGTAGACGGGCGTaGAGCACTTCTGCTCCTCGG | + |
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Preference number: 4 (lower is better) Translates to: QVPAEGTANLPLNRARGTTGRRA*STSAPR Trigger: CCGAGGAGCAGAAGTGCTCCACGCCCGTCTACCCGT...TGTCCCCCGTGCACGGTTCAATGGTAGATTCGCTGTCCCCTCAGCAGGGACCTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| CDS-3UTR TCA 90 bp | GCTGAGGGGACAGCGAATCTACCATTGAACCGTGCACGGGGGACATGGACGAAAGCCCGCTGGCCAGAGTaGCGGGGAAGGTGGAGTTCA | + |
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Preference number: 4 (lower is better) Translates to: AEGTANLPLNRARGTWTKARWPE*RGRWSS Trigger: TGAACTCCACCTTCCCCGTCACTCTGGCCAGCGGGC...TTTCGTCCATGTCCCCCGTGCACGGTTCAATGGTAGATTCGCTGTCCCCTCAGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| CDS-3UTR TCA 90 bp | CAGGTCCCTGCTGAGGGGACAGCGAATCTACCATTGAACCGTGCACGGGGGACATCCTCCGCACTGAGCTaGGACGCACTGAGCAGTTTG | + |
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Preference number: 4 (lower is better) Translates to: QVPAEGTANLPLNRARGTSSALS*DALSSL Trigger: CAAACTGCTCAGTGCGTCTCAGCTCAGTGCGGAGGA...TGTCCCCCGTGCACGGTTCAATGGTAGATTCGCTGTCCCCTCAGCAGGGACCTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| CDS-3UTR CCA 90 bp | TTCTGCTCTGCTTCCAGGAGACATCAAGTGAGTCCGATTCTCAGTTCTCACCAGTTGCGCGGCTCGGGGTaGAACGGGGGCGGCTCGTCG | + |
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Preference number: 4 (lower is better) Translates to: FCSASRRHQVSPILSSHQLRGSG*NGGGSS Trigger: CGACGAGCCGCCCCCGTTCCACCCCGAGCCGCGCAA...CTGGTGAGAACTGAGAATCGGACTCACTTGATGTCTCCTGGAAGCAGAGCAGAA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| CDS-3UTR GCA 90 bp | GTCTTTCAGGTCCCTGCTGAGGGGACAGCGAATCTACCATTGAACCGTGCACGGGGCGTGGAGCACTTCTaGTCCTCGGTCTCTCCGAAC | + |
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Preference number: 4 (lower is better) Translates to: VFQVPAEGTANLPLNRARGVEHF*SSVSPN Trigger: GTTCGGAGAGACCGAGGAGCAGAAGTGCTCCACGCC...CCGTGCACGGTTCAATGGTAGATTCGCTGTCCCCTCAGCAGGGACCTGAAAGAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| CDS-3UTR CCA 90 bp | ACGGGGGACATGGACGAAATGAGACTCGACAAGGACATGAGCATTCTGCTCTGCGTAGCCGCCGCCGGCTaGTGGGTAATAGGAGGACGC | + |
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Preference number: 4 (lower is better) Translates to: TGDMDEMRLDKDMSILLCVAAAG*WVIGGR Trigger: GCGTCCTCCTATTACCCACCAGCCGGCGGCGGCTAC...GCAGAGCAGAATGCTCATGTCCTTGTCGAGTCTCATTTCGTCCATGTCCCCCGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| CDS-3UTR TCA 90 bp | GCTGAGGGGACAGCGAATCTACCATTGAACCGTGCACGGGGGACATGGACGAAATCCTCCGCACTGAGCTaGGACGCACTGAGCAGTTTG | + |
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Preference number: 4 (lower is better) Translates to: AEGTANLPLNRARGTWTKSSALS*DALSSL Trigger: CAAACTGCTCAGTGCGTCTCAGCTCAGTGCGGAGGA...TTTCGTCCATGTCCCCCGTGCACGGTTCAATGGTAGATTCGCTGTCCCCTCAGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| CDS-3UTR GCA 90 bp | TCTCAGTTCTCACCAGAGAGCCTGATGAGGCCAAGGTGGGTTCTTCGGGGGAGGTGTTGCACGAATTCATaGGCTGCATCCACGGGTAGA | + |
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Preference number: 4 (lower is better) Translates to: SQFSPESLMRPRWVLRGRCCTNS*AASTGR Trigger: TCTACCCGTGGATGCAGCGCATGAATTCGTGCAACA...CCTCCCCCGAAGAACCCACCTTGGCCTCATCAGGCTCTCTGGTGAGAACTGAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| CDS-3UTR GCA 90 bp | TCTACCATTGAACCGTGCACGGGGGACATGGACGAAATGAGACTCGACAAGGACTGTTGCACGAATTCATaGGCTGCATCCACGGGTAGA | + |
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Preference number: 4 (lower is better) Translates to: STIEPCTGDMDEMRLDKDCCTNS*AASTGR Trigger: TCTACCCGTGGATGCAGCGCATGAATTCGTGCAACA...GTCCTTGTCGAGTCTCATTTCGTCCATGTCCCCCGTGCACGGTTCAATGGTAGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| CDS CCA 90 bp | AACACGCTCTTGTCCTGTGCGCAGTCGGACTTGCGCGGCTCGGGGTaGAACGGGGGCGGCTCGTCGGCGCCGGAGAGAGCGCAGGCCGCG | + |
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Preference number: 5 (lower is better) Translates to: NTLLSCAQSDLRGSG*NGGGSSAPERAQAA Trigger: CGCGGCCTGCGCTCTCTCCGGCGCCGACGAGCCGCCCCCGTTCCACCCCGAGCCGCGCAAGTCCGACTGCGCACAGGACAAGAGCGTGTT 73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| CDS CCA 90 bp | CGGCCCATAATCACAGGGCGCCGCCCGGCCGTAGCCGCCGCCGGCTaGTGGGTAATAGGAGGACGCCGCAAAGCCCTTGTCCTGGCCGGG | + |
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Preference number: 5 (lower is better) Translates to: RPIITGRRPAVAAAG*WVIGGRRKALVLAG Trigger: CCCGGCCAGGACAAGGGCTTTGCGGCGTCCTCCTATTACCCACCAGCCGGCGGCGGCTACGGCCGGGCGGCGCCCTGTGATTATGGGCCG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| CDS GCA 90 bp | CCTCGGTCTCTCCGAACACGCTCTTGTCCTGTGCGCAGTCGGACTTaGGCGGCTCGGGGTGGAACGGGGGCGGCTCGTCGGCGCCGGAGA | + |
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Preference number: 5 (lower is better) Translates to: PRSLRTRSCPVRSRT*AARGGTGAARRRRR Trigger: TCTCCGGCGCCGACGAGCCGCCCCCGTTCCACCCCGAGCCGCGCAAGTCCGACTGCGCACAGGACAAGAGCGTGTTCGGAGAGACCGAGG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| CDS GCA 90 bp | GGAGCACTTCTGCTCCTCGGTCTCTCCGAACACGCTCTTGTCCTGTaGGCAGTCGGACTTGCGCGGCTCGGGGTGGAACGGGGGCGGCTC | + |
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Preference number: 5 (lower is better) Translates to: GALLLLGLSEHALVL*AVGLARLGVERGRL Trigger: GAGCCGCCCCCGTTCCACCCCGAGCCGCGCAAGTCCGACTGCGCACAGGACAAGAGCGTGTTCGGAGAGACCGAGGAGCAGAAGTGCTCC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| CDS-3UTR CAA 90 bp | CAGGTCCCTGCTGAGGGGACAGCGAATCTACCATTGAACCGTGCACGGGGGACATGTGCGCAGTCGGACTaGCGCGGCTCGGGGTGGAAC | + |
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Preference number: 5 (lower is better) Translates to: QVPAEGTANLPLNRARGTCAQSD*RGSGWN Trigger: GTTCCACCCCGAGCCGCGCAAGTCCGACTGCGCACA...TGTCCCCCGTGCACGGTTCAATGGTAGATTCGCTGTCCCCTCAGCAGGGACCTG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| CDS-3UTR CAA 90 bp | TTCCAGGAGACATCAAGTGAGTCCGATTCTCAGTTCTCACCAGAGAGCCTGATGTGTGCGCAGTCGGACTaGCGCGGCTCGGGGTGGAAC | + |
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Preference number: 5 (lower is better) Translates to: FQETSSESDSQFSPESLMCAQSD*RGSGWN Trigger: GTTCCACCCCGAGCCGCGCAAGTCCGACTGCGCACA...CATCAGGCTCTCTGGTGAGAACTGAGAATCGGACTCACTTGATGTCTCCTGGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| CDS-3UTR CAA 90 bp | TCTACCATTGAACCGTGCACGGGGGACATGGACGAAATGAGACTCGACAAGGACTCTCCGAACACGCTCTaGTCCTGTGCGCAGTCGGAC | + |
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Preference number: 5 (lower is better) Translates to: STIEPCTGDMDEMRLDKDSPNTL*SCAQSD Trigger: GTCCGACTGCGCACAGGACAAGAGCGTGTTCGGAGA...GTCCTTGTCGAGTCTCATTTCGTCCATGTCCCCCGTGCACGGTTCAATGGTAGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| CDS-3UTR CAA 90 bp | CAGGTCCCTGCTGAGGGGACAGCGAATCTACCATTGAACCGTGCACGGGGGACAGACGCACTGAGCAGTTaGCTCTCCTTTTTCCACTTC | + |
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Preference number: 5 (lower is better) Translates to: QVPAEGTANLPLNRARGTDALSS*LSFFHF Trigger: GAAGTGGAAAAAGGAGAGCAAACTGCTCAGTGCGTC...TGTCCCCCGTGCACGGTTCAATGGTAGATTCGCTGTCCCCTCAGCAGGGACCTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| CDS-3UTR CAA 90 bp | TTCTGCTCTGCTTCCAGGAGACATCAAGTGAGTCCGATTCTCAGTTCTCACCAGTCTCCGAACACGCTCTaGTCCTGTGCGCAGTCGGAC | + |
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Preference number: 5 (lower is better) Translates to: FCSASRRHQVSPILSSHQSPNTL*SCAQSD Trigger: GTCCGACTGCGCACAGGACAAGAGCGTGTTCGGAGA...CTGGTGAGAACTGAGAATCGGACTCACTTGATGTCTCCTGGAAGCAGAGCAGAA 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| CDS-3UTR CAA 90 bp | TCTACCATTGAACCGTGCACGGGGGACATGGACGAAATGAGACTCGACAAGGACGACGCACTGAGCAGTTaGCTCTCCTTTTTCCACTTC | + |
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Preference number: 5 (lower is better) Translates to: STIEPCTGDMDEMRLDKDDALSS*LSFFHF Trigger: GAAGTGGAAAAAGGAGAGCAAACTGCTCAGTGCGTC...GTCCTTGTCGAGTCTCATTTCGTCCATGTCCCCCGTGCACGGTTCAATGGTAGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| CDS-3UTR CAA 90 bp | TTCCAGGAGACATCAAGTGAGTCCGATTCTCAGTTCTCACCAGAGAGCCTGATGCCAAAAGAGGAACTGTaGCACGAATTCATGCGCTGC | + |
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Preference number: 5 (lower is better) Translates to: FQETSSESDSQFSPESLMPKEEL*HEFMRC Trigger: GCAGCGCATGAATTCGTGCAACAGTTCCTCTTTTGG...CATCAGGCTCTCTGGTGAGAACTGAGAATCGGACTCACTTGATGTCTCCTGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| CDS CCA 72 bp | TTGTCCTGTGCGCAGTCGGACTTGCGCGGCTCGGGGTaGAACGGGGGCGGCTCGTCGGCGCCGGAGAGAGCG | + |
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Preference number: 6 (lower is better) Translates to: LSCAQSDLRGSG*NGGGSSAPERA Trigger: CGCTCTCTCCGGCGCCGACGAGCCGCCCCCGTTCCACCCCGAGCCGCGCAAGTCCGACTGCGCACAGGACAA 74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| CDS CAA 90 bp | TCCTCGGTCTCTCCGAACACGCTCTTGTCCTGTGCGCAGTCGGACTaGCGCGGCTCGGGGTGGAACGGGGGCGGCTCGTCGGCGCCGGAG | + |
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Preference number: 6 (lower is better) Translates to: SSVSPNTLLSCAQSD*RGSGWNGGGSSAPE Trigger: CTCCGGCGCCGACGAGCCGCCCCCGTTCCACCCCGAGCCGCGCAAGTCCGACTGCGCACAGGACAAGAGCGTGTTCGGAGAGACCGAGGA 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| CDS GCA 72 bp | CTCCGAACACGCTCTTGTCCTGTGCGCAGTCGGACTTaGGCGGCTCGGGGTGGAACGGGGGCGGCTCGTCGG | + |
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Preference number: 6 (lower is better) Translates to: LRTRSCPVRSRT*AARGGTGAARR Trigger: CCGACGAGCCGCCCCCGTTCCACCCCGAGCCGCGCAAGTCCGACTGCGCACAGGACAAGAGCGTGTTCGGAG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| CDS CCA 72 bp | ATCACAGGGCGCCGCCCGGCCGTAGCCGCCGCCGGCTaGTGGGTAATAGGAGGACGCCGCAAAGCCCTTGTC | + |
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Preference number: 6 (lower is better) Translates to: ITGRRPAVAAAG*WVIGGRRKALV Trigger: GACAAGGGCTTTGCGGCGTCCTCCTATTACCCACCAGCCGGCGGCGGCTACGGCCGGGCGGCGCCCTGTGAT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| CDS CAA 72 bp | TCTCCGAACACGCTCTTGTCCTGTGCGCAGTCGGACTaGCGCGGCTCGGGGTGGAACGGGGGCGGCTCGTCG | + |
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Preference number: 6 (lower is better) Translates to: SPNTLLSCAQSD*RGSGWNGGGSS Trigger: CGACGAGCCGCCCCCGTTCCACCCCGAGCCGCGCAAGTCCGACTGCGCACAGGACAAGAGCGTGTTCGGAGA 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| CDS CAA 90 bp | ACGGGCGTGGAGCACTTCTGCTCCTCGGTCTCTCCGAACACGCTCTaGTCCTGTGCGCAGTCGGACTTGCGCGGCTCGGGGTGGAACGGG | + |
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Preference number: 6 (lower is better) Translates to: TGVEHFCSSVSPNTL*SCAQSDLRGSGWNG Trigger: CCCGTTCCACCCCGAGCCGCGCAAGTCCGACTGCGCACAGGACAAGAGCGTGTTCGGAGAGACCGAGGAGCAGAAGTGCTCCACGCCCGT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| CDS GCA 72 bp | CTGCTCCTCGGTCTCTCCGAACACGCTCTTGTCCTGTaGGCAGTCGGACTTGCGCGGCTCGGGGTGGAACGG | + |
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Preference number: 6 (lower is better) Translates to: LLLGLSEHALVL*AVGLARLGVER Trigger: CCGTTCCACCCCGAGCCGCGCAAGTCCGACTGCGCACAGGACAAGAGCGTGTTCGGAGAGACCGAGGAGCAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| CDS CAA 72 bp | GAGCACTTCTGCTCCTCGGTCTCTCCGAACACGCTCTaGTCCTGTGCGCAGTCGGACTTGCGCGGCTCGGGG | + |
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Preference number: 6 (lower is better) Translates to: EHFCSSVSPNTL*SCAQSDLRGSG Trigger: CCCCGAGCCGCGCAAGTCCGACTGCGCACAGGACAAGAGCGTGTTCGGAGAGACCGAGGAGCAGAAGTGCTC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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| CDS GCA 72 bp | CGCTGGGCCCAAAAGAGGAACTGTTGCACGAATTCATaGGCTGCATCCACGGGTAGACGGGCGTGGAGCACT | + |
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Preference number: 6 (lower is better) Translates to: RWAQKRNCCTNS*AASTGRRAWST Trigger: AGTGCTCCACGCCCGTCTACCCGTGGATGCAGCGCATGAATTCGTGCAACAGTTCCTCTTTTGGGCCCAGCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000704.6 ENSMUST00000173432.3 |
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