Pregenerated sensors for HOXB5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038700Ensembl transcript IDs: ENSMUST00000049272.5
Found 79 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCCCAGCGGGCAGCGGCAGTGCAGGGAAGATTGGAAGGGTCGAGCTaGGGTTGGTGCGGGCTCTCGGGCCGCCCAGGGCTCCTCCGGATG | + |
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Preference number: 1 (lower is better) Translates to: PQRAAAVQGRLEGSS*GWCGLSGRPGLLRM Trigger: CATCCGGAGGAGCCCTGGGCGGCCCGAGAGCCCGCACCAACCCCAGCTCGACCCTTCCAATCTTCCCTGCACTGCCGCTGCCCGCTGGGG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| 3UTR CCA 90 bp | TCGTGGGAACTGGTCCCCAGCGGGCAGCGGCAGTGCAGGGAAGATTaGAAGGGTCGAGCTGGGGTTGGTGCGGGCTCTCGGGCCGCCCAG | + |
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Preference number: 1 (lower is better) Translates to: SWELVPSGQRQCRED*KGRAGVGAGSRAAQ Trigger: CTGGGCGGCCCGAGAGCCCGCACCAACCCCAGCTCGACCCTTCCAATCTTCCCTGCACTGCCGCTGCCCGCTGGGGACCAGTTCCCACGA 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| 3UTR GCA 90 bp | GGTGTGACAGGCTCGTGGGAACTGGTCCCCAGCGGGCAGCGGCAGTaGAGGGAAGATTGGAAGGGTCGAGCTGGGGTTGGTGCGGGCTCT | + |
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Preference number: 1 (lower is better) Translates to: GVTGSWELVPSGQRQ*REDWKGRAGVGAGS Trigger: AGAGCCCGCACCAACCCCAGCTCGACCCTTCCAATCTTCCCTGCACTGCCGCTGCCCGCTGGGGACCAGTTCCCACGAGCCTGTCACACC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| 3UTR CCA 90 bp | GCCATGGGAAGACCTAAGACCAAACGAAAAATTGTAACACAGGACTaGGGTGTGACAGGCTCGTGGGAACTGGTCCCCAGCGGGCAGCGG | + |
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Preference number: 1 (lower is better) Translates to: AMGRPKTKRKIVTQD*GVTGSWELVPSGQR Trigger: CCGCTGCCCGCTGGGGACCAGTTCCCACGAGCCTGTCACACCCCAGTCCTGTGTTACAATTTTTCGTTTGGTCTTAGGTCTTCCCATGGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| 3UTR CCA 90 bp | AAAAGAGACACAGACAGTGGGCTCCATTTCCCAGGCCAGCTCAGCTaGGCCCAGCACTACCCAACCTCAACTGCTGCCCCTTATGGAAGT | + |
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Preference number: 1 (lower is better) Translates to: KRDTDSGLHFPGQLS*AQHYPTSTAAPYGS Trigger: ACTTCCATAAGGGGCAGCAGTTGAGGTTGGGTAGTGCTGGGCCCAGCTGAGCTGGCCTGGGAAATGGAGCCCACTGTCTGTGTCTCTTTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| 3UTR CCA 90 bp | ACTACAAATGGTCTTGGAAGCGAAATGGGTGAGAGAGGAAGTGATTaGCCTGACCCAGACTATCCCCATATTTACAGCATTGGGCCTTCT | + |
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Preference number: 1 (lower is better) Translates to: TTNGLGSEMGERGSD*PDPDYPHIYSIGPS Trigger: AGAAGGCCCAATGCTGTAAATATGGGGATAGTCTGGGTCAGGCCAATCACTTCCTCTCTCACCCATTTCGCTTCCAAGACCATTTGTAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| 3UTR CAA 90 bp | CTCGTGGGAACTGGTCCCCAGCGGGCAGCGGCAGTGCAGGGAAGATaGGAAGGGTCGAGCTGGGGTTGGTGCGGGCTCTCGGGCCGCCCA | + |
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Preference number: 2 (lower is better) Translates to: LVGTGPQRAAAVQGR*EGSSWGWCGLSGRP Trigger: TGGGCGGCCCGAGAGCCCGCACCAACCCCAGCTCGACCCTTCCAATCTTCCCTGCACTGCCGCTGCCCGCTGGGGACCAGTTCCCACGAG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| 3UTR-3UTR GCA 90 bp | TGGGAGAAAAGAGACACAGACAGTGGGCTCCATTTCCCAGGCCAGCTCAGCTGGTCGAGCTGGGGTTGGTaGGGGCTCTCGGGCCGCCCA | + |
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Preference number: 2 (lower is better) Translates to: WEKRDTDSGLHFPGQLSWSSWGW*GLSGRP Trigger: TGGGCGGCCCGAGAGCCCGCACCAACCCCAGCTCGA...CCAGCTGAGCTGGCCTGGGAAATGGAGCCCACTGTCTGTGTCTCTTTTCTCCCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| 3UTR-3UTR CCA 90 bp | ATTCCATACGCTTCCAGACTAGGCCTTGTGGGGCCTACCAGGCAGCAGGAGTTCCAGGCTCGTGGGAACTaGTCCCCAGCGGGCAGCGGC | + |
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Preference number: 2 (lower is better) Translates to: IPYASRLGLVGPTRQQEFQARGN*SPAGSG Trigger: GCCGCTGCCCGCTGGGGACCAGTTCCCACGAGCCTG...GAACTCCTGCTGCCTGGTAGGCCCCACAAGGCCTAGTCTGGAAGCGTATGGAAT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| 3UTR-3UTR CCA 90 bp | CCTTCCCTAGCTCCCTTCCCACCCCAAGGAACAAGCTACCTGAGCCTAGGGAGTGCGAGCCAAGAGAAGTaGGGAGCACGGAGGGGGAAA | + |
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Preference number: 2 (lower is better) Translates to: PSLAPFPPQGTSYLSLGSASQEK*GARRGK Trigger: TTTCCCCCTCCGTGCTCCCCACTTCTCTTGGCTCGC...ACTCCCTAGGCTCAGGTAGCTTGTTCCTTGGGGTGGGAAGGGAGCTAGGGAAGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| 3UTR-3UTR CCA 90 bp | TGGGAGAAAAGAGACACAGACAGTGGGCTCCATTTCCCAGGCCAGCTCAGCTGGCAGTGCAGGGAAGATTaGAAGGGTCGAGCTGGGGTT | + |
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Preference number: 2 (lower is better) Translates to: WEKRDTDSGLHFPGQLSWQCRED*KGRAGV Trigger: AACCCCAGCTCGACCCTTCCAATCTTCCCTGCACTG...CCAGCTGAGCTGGCCTGGGAAATGGAGCCCACTGTCTGTGTCTCTTTTCTCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| 3UTR-3UTR CCA 90 bp | TTTTTCCTGGGGAAAGGAGCGCAACCACAGACACGAGGACATTCAGAAACACTGGGTGTGACAGGCTCGTaGGAACTGGTCCCCAGCGGG | + |
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Preference number: 2 (lower is better) Translates to: FFLGKGAQPQTRGHSETLGVTGS*ELVPSG Trigger: CCCGCTGGGGACCAGTTCCCACGAGCCTGTCACACC...CAGTGTTTCTGAATGTCCTCGTGTCTGTGGTTGCGCTCCTTTCCCCAGGAAAAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| 3UTR-3UTR CCA 90 bp | GAAGTGATTGGCCTGACCCAGACTATCCCCATATTTACAGCATTGGGCCTTCTACCAGGCCAGCTCAGCTaGGCCCAGCACTACCCAACC | + |
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Preference number: 2 (lower is better) Translates to: EVIGLTQTIPIFTALGLLPGQLS*AQHYPT Trigger: GGTTGGGTAGTGCTGGGCCCAGCTGAGCTGGCCTGG...TAGAAGGCCCAATGCTGTAAATATGGGGATAGTCTGGGTCAGGCCAATCACTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| 3UTR-3UTR GCA 90 bp | AGAGAGGAAGTGATTGGCCTGACCCAGACTATCCCCATATTTACAGCATTGGGCAGCGGGCAGCGGCAGTaGAGGGAAGATTGGAAGGGT | + |
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Preference number: 2 (lower is better) Translates to: REEVIGLTQTIPIFTALGSGQRQ*REDWKG Trigger: ACCCTTCCAATCTTCCCTGCACTGCCGCTGCCCGCT...GCCCAATGCTGTAAATATGGGGATAGTCTGGGTCAGGCCAATCACTTCCTCTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| 3UTR-3UTR TCA 90 bp | GGCCTGGCAAAGACAGATTTCACACGTAGCACAGCATCCACCCGCTCACTACAAGGGGCTGAAGAAGGATaGGGTGGGAGAAAAGAGACA | + |
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Preference number: 2 (lower is better) Translates to: GLAKTDFTRSTASTRSLQGAEEG*GGRKET Trigger: TGTCTCTTTTCTCCCACCTCATCCTTCTTCAGCCCC...TTGTAGTGAGCGGGTGGATGCTGTGCTACGTGTGAAATCTGTCTTTGCCAGGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| 3UTR-3UTR TCA 90 bp | CATATTTACAGCATTGGGCCTTCTAGCCAGACCCACGGATTCACAGAGAAAAATGGGGCTGGGTGGGGCTaGAGAAGGATGAGGTGGGAG | + |
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Preference number: 2 (lower is better) Translates to: HIYSIGPSSQTHGFTEKNGAGWG*RRMRWE Trigger: CTCCCACCTCATCCTTCTTCAGCCCCACCCAGCCCC...ATTTTTCTCTGTGAATCCGTGGGTCTGGCTAGAAGGCCCAATGCTGTAAATATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| 3UTR-3UTR CCA 90 bp | TTCCTGGGGAAAGGAGCGCAACCACAGACACGAGGACATTCAGAAACACTGGCAATTGTAACACAGGACTaGGGTGTGACAGGCTCGTGG | + |
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Preference number: 2 (lower is better) Translates to: FLGKGAQPQTRGHSETLAIVTQD*GVTGSW Trigger: CCACGAGCCTGTCACACCCCAGTCCTGTGTTACAAT...TGCCAGTGTTTCTGAATGTCCTCGTGTCTGTGGTTGCGCTCCTTTCCCCAGGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| 3UTR-3UTR CCA 90 bp | TCACTGAGACAGGCCTGGCAAAGACAGATTTCACACGTAGCACAGCATCCACCCGAGAGAGGAAGTGATTaGCCTGACCCAGACTATCCC | + |
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Preference number: 2 (lower is better) Translates to: SLRQAWQRQISHVAQHPPERGSD*PDPDYP Trigger: GGGATAGTCTGGGTCAGGCCAATCACTTCCTCTCTC...GGGTGGATGCTGTGCTACGTGTGAAATCTGTCTTTGCCAGGCCTGTCTCAGTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| 3UTR CAA 90 bp | GATTTCACACGTAGCACAGCATCCACCCGCTCACTACAAATGGTCTaGGAAGCGAAATGGGTGAGAGAGGAAGTGATTGGCCTGACCCAG | + |
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Preference number: 2 (lower is better) Translates to: DFTRSTASTRSLQMV*EAKWVREEVIGLTQ Trigger: CTGGGTCAGGCCAATCACTTCCTCTCTCACCCATTTCGCTTCCAAGACCATTTGTAGTGAGCGGGTGGATGCTGTGCTACGTGTGAAATC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| 3UTR-3UTR GCA 90 bp | GGCCTGGCAAAGACAGATTTCACACGTAGCACAGCATCCACCCGCTCACTACAACCCAACCTCAACTGCTaGCCCTTATGGAAGTTTCCA | + |
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Preference number: 2 (lower is better) Translates to: GLAKTDFTRSTASTRSLQPNLNC*PLWKFP Trigger: TGGAAACTTCCATAAGGGGCAGCAGTTGAGGTTGGG...TTGTAGTGAGCGGGTGGATGCTGTGCTACGTGTGAAATCTGTCTTTGCCAGGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| 3UTR-3UTR GCA 90 bp | TGGCAAAGACAGATTTCACACGTAGCACAGCATCCACCCGCTCACTACAAATGGCAGGAGTTCAGCTCTTaGTCCTTTCCTCTCCTCTTC | + |
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Preference number: 2 (lower is better) Translates to: WQRQISHVAQHPPAHYKWQEFSS*SFPLLF Trigger: GAAGAGGAGAGGAAAGGAGCAAGAGCTGAACTCCTG...CCATTTGTAGTGAGCGGGTGGATGCTGTGCTACGTGTGAAATCTGTCTTTGCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| 3UTR-3UTR CCA 90 bp | GCTCCTTTCCTCTCCTCTTCTCAATGTCCACACTTTGACCCTTCCCTAGCTCCCTTCTTTTCTTTTTCCTaGGGAAAGGAGCGCAACCAC | + |
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Preference number: 2 (lower is better) Translates to: APFLSSSQCPHFDPSLAPFFSFS*GKERNH Trigger: GTGGTTGCGCTCCTTTCCCCAGGAAAAAGAAAAGAA...GGGAGCTAGGGAAGGGTCAAAGTGTGGACATTGAGAAGAGGAGAGGAAAGGAGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| 3UTR CAA 90 bp | GAGGAAGTGATTGGCCTGACCCAGACTATCCCCATATTTACAGCATaGGGCCTTCTAGCCAGACCCACGGATTCACAGAGAAAAATCACA | + |
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Preference number: 2 (lower is better) Translates to: EEVIGLTQTIPIFTA*GLLARPTDSQRKIT Trigger: TGTGATTTTTCTCTGTGAATCCGTGGGTCTGGCTAGAAGGCCCAATGCTGTAAATATGGGGATAGTCTGGGTCAGGCCAATCACTTCCTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| 3UTR-3UTR GCA 90 bp | TGGCAAAGACAGATTTCACACGTAGCACAGCATCCACCCGCTCACTACAAATGGCTACCCAACCTCAACTaGTGCCCCTTATGGAAGTTT | + |
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Preference number: 2 (lower is better) Translates to: WQRQISHVAQHPPAHYKWLPNLN*CPLWKF Trigger: AAACTTCCATAAGGGGCAGCAGTTGAGGTTGGGTAG...CCATTTGTAGTGAGCGGGTGGATGCTGTGCTACGTGTGAAATCTGTCTTTGCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| 3UTR CCA 72 bp | CTGGTCCCCAGCGGGCAGCGGCAGTGCAGGGAAGATTaGAAGGGTCGAGCTGGGGTTGGTGCGGGCTCTCGG | + |
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Preference number: 3 (lower is better) Translates to: LVPSGQRQCRED*KGRAGVGAGSR Trigger: CCGAGAGCCCGCACCAACCCCAGCTCGACCCTTCCAATCTTCCCTGCACTGCCGCTGCCCGCTGGGGACCAG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| 3UTR CCA 72 bp | ACAGACAGTGGGCTCCATTTCCCAGGCCAGCTCAGCTaGGCCCAGCACTACCCAACCTCAACTGCTGCCCCT | + |
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Preference number: 3 (lower is better) Translates to: TDSGLHFPGQLS*AQHYPTSTAAP Trigger: AGGGGCAGCAGTTGAGGTTGGGTAGTGCTGGGCCCAGCTGAGCTGGCCTGGGAAATGGAGCCCACTGTCTGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| 3UTR-3UTR CAA 90 bp | TGGCAAAGACAGATTTCACACGTAGCACAGCATCCACCCGCTCACTACAAATGGAGGGTCGAGCTGGGGTaGGTGCGGGCTCTCGGGCCG | + |
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Preference number: 3 (lower is better) Translates to: WQRQISHVAQHPPAHYKWRVELG*VRALGP Trigger: CGGCCCGAGAGCCCGCACCAACCCCAGCTCGACCCT...CCATTTGTAGTGAGCGGGTGGATGCTGTGCTACGTGTGAAATCTGTCTTTGCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| 3UTR GCA 72 bp | GCTCAGCTGGGCCCAGCACTACCCAACCTCAACTGCTaGCCCTTATGGAAGTTTCCAGCAGAAACTCAAAAT | + |
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Preference number: 3 (lower is better) Translates to: AQLGPALPNLNC*PLWKFPAETQN Trigger: ATTTTGAGTTTCTGCTGGAAACTTCCATAAGGGGCAGCAGTTGAGGTTGGGTAGTGCTGGGCCCAGCTGAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| 3UTR CCA 72 bp | AGACCTAAGACCAAACGAAAAATTGTAACACAGGACTaGGGTGTGACAGGCTCGTGGGAACTGGTCCCCAGC | + |
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Preference number: 3 (lower is better) Translates to: RPKTKRKIVTQD*GVTGSWELVPS Trigger: GCTGGGGACCAGTTCCCACGAGCCTGTCACACCCCAGTCCTGTGTTACAATTTTTCGTTTGGTCTTAGGTCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| 3UTR TCA 72 bp | CGGATTCACAGAGAAAAATCACAAGACATTTTACACTaGGGATTATTTCTGATTCCATACGCTTCCAGACTA | + |
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Preference number: 3 (lower is better) Translates to: RIHREKSQDILH*GLFLIPYASRL Trigger: TAGTCTGGAAGCGTATGGAATCAGAAATAATCCTCAGTGTAAAATGTCTTGTGATTTTTCTCTGTGAATCCG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS-3UTR CCA 90 bp | GACTGGGGTGTGACAGGCTCGTGGGAACTGGTCCCCAGCGGGCAGCGGCAGTGCCCCACCGCCCCAAAGTaGCTGGAGGAGGCCGAGGAG | + |
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Preference number: 4 (lower is better) Translates to: DWGVTGSWELVPSGQRQCPTAPK*LEEAEE Trigger: CTCCTCGGCCTCCTCCAGCCACTTTGGGGCGGTGGG...GCACTGCCGCTGCCCGCTGGGGACCAGTTCCCACGAGCCTGTCACACCCCAGTC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS-3UTR CCA 90 bp | GCGGGCAGCGGCAGTGCAGGGAAGATTGGAAGGGTCGAGCTGGGGTTGGTGCGGCTGAAGCGGGGTTCCTaGGCGGACGCGGGGAAGGCG | + |
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Preference number: 4 (lower is better) Translates to: AGSGSAGKIGRVELGLVRLKRGS*ADAGKA Trigger: CGCCTTCCCCGCGTCCGCCCAGGAACCCCGCTTCAG...CCGCACCAACCCCAGCTCGACCCTTCCAATCTTCCCTGCACTGCCGCTGCCCGC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS-3UTR GCA 90 bp | GACTGGGGTGTGACAGGCTCGTGGGAACTGGTCCCCAGCGGGCAGCGGCAGTGCCAGCTGGACGTCGCCTaGCTGAAGCGGGGTTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: DWGVTGSWELVPSGQRQCQLDVA*LKRGSW Trigger: CCAGGAACCCCGCTTCAGGCAGGCGACGTCCAGCTG...GCACTGCCGCTGCCCGCTGGGGACCAGTTCCCACGAGCCTGTCACACCCCAGTC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS-3UTR CCA 90 bp | GCGGGCAGCGGCAGTGCAGGGAAGATTGGAAGGGTCGAGCTGGGGTTGGTGCGGGGTGGCCATGGGCTCTaGCTGTGCTCGAGCCAAGCT | + |
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Preference number: 4 (lower is better) Translates to: AGSGSAGKIGRVELGLVRGGHGL*LCSSQA Trigger: AGCTTGGCTCGAGCACAGCCAGAGCCCATGGCCACC...CCGCACCAACCCCAGCTCGACCCTTCCAATCTTCCCTGCACTGCCGCTGCCCGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS-3UTR TCA 90 bp | CCCTTCCCTAGCTCCCTTCCCACCCCAAGGAACAAGCTACCTGAGCCTAGGGAGTGGACGTCGCCTGCCTaGAGCGGGGTTCCTGGGCGG | + |
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Preference number: 4 (lower is better) Translates to: PFPSSLPTPRNKLPEPREWTSPA*SGVPGR Trigger: CCGCCCAGGAACCCCGCTTCAGGCAGGCGACGTCCA...CTCCCTAGGCTCAGGTAGCTTGTTCCTTGGGGTGGGAAGGGAGCTAGGGAAGGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS-3UTR CCA 90 bp | ATTCCATACGCTTCCAGACTAGGCCTTGTGGGGCCTACCAGGCAGCAGGAGTTCGGCGCTGGAGCTGGCTaGGGTCGCCTGGTCGGAAGG | + |
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Preference number: 4 (lower is better) Translates to: IPYASRLGLVGPTRQQEFGAGAG*GRLVGR Trigger: CCTTCCGACCAGGCGACCCCAGCCAGCTCCAGCGCC...GAACTCCTGCTGCCTGGTAGGCCCCACAAGGCCTAGTCTGGAAGCGTATGGAAT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS-3UTR GCA 90 bp | GACTGGGGTGTGACAGGCTCGTGGGAACTGGTCCCCAGCGGGCAGCGGCAGTGCAGCCGCTCAGAGAGCTaGCACTGCCATAATTTAGCA | + |
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Preference number: 4 (lower is better) Translates to: DWGVTGSWELVPSGQRQCSRSES*HCHNLA Trigger: TGCTAAATTATGGCAGTGGCAGCTCTCTGAGCGGCT...GCACTGCCGCTGCCCGCTGGGGACCAGTTCCCACGAGCCTGTCACACCCCAGTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS-3UTR GCA 90 bp | GACCCTTCCCTAGCTCCCTTCCCACCCCAAGGAACAAGCTACCTGAGCCTAGGGAATATCTGTGGAGTCTaGCCCTCGGGCGCGGCCGTA | + |
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Preference number: 4 (lower is better) Translates to: DPSLAPFPPQGTSYLSLGNICGV*PSGAAV Trigger: TACGGCCGCGCCCGAGGGGCAGACTCCACAGATATT...CCCTAGGCTCAGGTAGCTTGTTCCTTGGGGTGGGAAGGGAGCTAGGGAAGGGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS-3UTR CCA 90 bp | CCTTCCCTAGCTCCCTTCCCACCCCAAGGAACAAGCTACCTGAGCCTAGGGAGTCCAGGGGAATATCTGTaGAGTCTGCCCCTCGGGCGC | + |
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Preference number: 4 (lower is better) Translates to: PSLAPFPPQGTSYLSLGSPGEYL*SLPLGR Trigger: GCGCCCGAGGGGCAGACTCCACAGATATTCCCCTGG...ACTCCCTAGGCTCAGGTAGCTTGTTCCTTGGGGTGGGAAGGGAGCTAGGGAAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS-3UTR CCA 90 bp | GGCCTGGCAAAGACAGATTTCACACGTAGCACAGCATCCACCCGCTCACTACAACTGGGGCTGCTTAGCTaGCTCGCCGCTTCCTCGGGC | + |
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Preference number: 4 (lower is better) Translates to: GLAKTDFTRSTASTRSLQLGLLS*LAASSG Trigger: GCCCGAGGAAGCGGCGAGCCAGCTAAGCAGCCCCAG...TTGTAGTGAGCGGGTGGATGCTGTGCTACGTGTGAAATCTGTCTTTGCCAGGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS-3UTR CCA 90 bp | GGAGAAAAGAGACACAGACAGTGGGCTCCATTTCCCAGGCCAGCTCAGCTGGGCAAGAGCCGGTGTGCATaGCAGCGGGATCCCTGTAAG | + |
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Preference number: 4 (lower is better) Translates to: GEKRHRQWAPFPRPAQLGKSRCA*QRDPCK Trigger: CTTACAGGGATCCCGCTGCCATGCACACCGGCTCTT...GCCCAGCTGAGCTGGCCTGGGAAATGGAGCCCACTGTCTGTGTCTCTTTTCTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS-3UTR GCA 90 bp | TCACTGAGACAGGCCTGGCAAAGACAGATTTCACACGTAGCACAGCATCCACCCCATGGGCTCTGGCTGTaGTCGAGCCAAGCTGGGGCT | + |
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Preference number: 4 (lower is better) Translates to: SLRQAWQRQISHVAQHPPHGLWL*SSQAGA Trigger: AGCCCCAGCTTGGCTCGAGCACAGCCAGAGCCCATG...GGGTGGATGCTGTGCTACGTGTGAAATCTGTCTTTGCCAGGCCTGTCTCAGTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS-3UTR CCA 90 bp | GATTGGCCTGACCCAGACTATCCCCATATTTACAGCATTGGGCCTTCTAGCCAGGAGGGCTTGGCGCCGTaGCTGTCGCCGTTAGTGCAG | + |
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Preference number: 4 (lower is better) Translates to: DWPDPDYPHIYSIGPSSQEGLAP*LSPLVQ Trigger: CTGCACTAACGGCGACAGCCACGGCGCCAAGCCCTC...CTGGCTAGAAGGCCCAATGCTGTAAATATGGGGATAGTCTGGGTCAGGCCAATC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS-3UTR CCA 90 bp | GCTCCTTTCCTCTCCTCTTCTCAATGTCCACACTTTGACCCTTCCCTAGCTCCCGTGCTCGAGCCAAGCTaGGGCTGCTTAGCTGGCTCG | + |
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Preference number: 4 (lower is better) Translates to: APFLSSSQCPHFDPSLAPVLEPS*GCLAGS Trigger: CGAGCCAGCTAAGCAGCCCCAGCTTGGCTCGAGCAC...GGGAGCTAGGGAAGGGTCAAAGTGTGGACATTGAGAAGAGGAGAGGAAAGGAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS-3UTR CCA 90 bp | GAAGTGATTGGCCTGACCCAGACTATCCCCATATTTACAGCATTGGGCCTTCTAAATTGGCGCTGGAGCTaGCTGGGGTCGCCTGGTCGG | + |
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Preference number: 4 (lower is better) Translates to: EVIGLTQTIPIFTALGLLNWRWS*LGSPGR Trigger: CCGACCAGGCGACCCCAGCCAGCTCCAGCGCCAATT...TAGAAGGCCCAATGCTGTAAATATGGGGATAGTCTGGGTCAGGCCAATCACTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS-3UTR TCA 90 bp | GCTCCTTTCCTCTCCTCTTCTCAATGTCCACACTTTGACCCTTCCCTAGCTCCCCCTCGTCTATTTCGGTaGAATTGGCGCTGGAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: APFLSSSQCPHFDPSLAPPRLFR*NWRWSW Trigger: CCAGCTCCAGCGCCAATTTCACCGAAATAGACGAGG...GGGAGCTAGGGAAGGGTCAAAGTGTGGACATTGAGAAGAGGAGAGGAAAGGAGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS-3UTR CCA 90 bp | TTCCTGGGGAAAGGAGCGCAACCACAGACACGAGGACATTCAGAAACACTGGCAATAGTCCGGGCCATTTaGATAACGCCCCGAGAAGGA | + |
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Preference number: 4 (lower is better) Translates to: FLGKGAQPQTRGHSETLAIVRAI*ITPREG Trigger: TCCTTCTCGGGGCGTTATCCAAATGGCCCGGACTAT...TGCCAGTGTTTCTGAATGTCCTCGTGTCTGTGGTTGCGCTCCTTTCCCCAGGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS-3UTR CCA 90 bp | TACCCAACCTCAACTGCTGCCCCTTATGGAAGTTTCCAGCAGAAACTCAAAATACTGGCTGGGGTCGCCTaGTCGGAAGGGGACGAAGCA | + |
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Preference number: 4 (lower is better) Translates to: YPTSTAAPYGSFQQKLKILAGVA*SEGDEA Trigger: TGCTTCGTCCCCTTCCGACCAGGCGACCCCAGCCAG...TATTTTGAGTTTCTGCTGGAAACTTCCATAAGGGGCAGCAGTTGAGGTTGGGTA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| 3UTR CAA 72 bp | CGTAGCACAGCATCCACCCGCTCACTACAAATGGTCTaGGAAGCGAAATGGGTGAGAGAGGAAGTGATTGGC | + |
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Preference number: 4 (lower is better) Translates to: RSTASTRSLQMV*EAKWVREEVIG Trigger: GCCAATCACTTCCTCTCTCACCCATTTCGCTTCCAAGACCATTTGTAGTGAGCGGGTGGATGCTGTGCTACG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS-3UTR TCA 90 bp | TGGCAAAGACAGATTTCACACGTAGCACAGCATCCACCCGCTCACTACAAATGGATATCGTGGCTGATGTaGAGCTTCCTCATCCAGGGG | + |
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Preference number: 4 (lower is better) Translates to: WQRQISHVAQHPPAHYKWISWLM*SFLIQG Trigger: CCCCTGGATGAGGAAGCTTCACATCAGCCACGATAT...CCATTTGTAGTGAGCGGGTGGATGCTGTGCTACGTGTGAAATCTGTCTTTGCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| 3UTR CAA 72 bp | ATTGGCCTGACCCAGACTATCCCCATATTTACAGCATaGGGCCTTCTAGCCAGACCCACGGATTCACAGAGA | + |
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Preference number: 4 (lower is better) Translates to: IGLTQTIPIFTA*GLLARPTDSQR Trigger: TCTCTGTGAATCCGTGGGTCTGGCTAGAAGGCCCAATGCTGTAAATATGGGGATAGTCTGGGTCAGGCCAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS-3UTR TCA 90 bp | TTTTTCCTGGGGAAAGGAGCGCAACCACAGACACGAGGACATTCAGAAACACTGCAGTCATATCGTGGCTaGTGTGAAGCTTCCTCATCC | + |
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Preference number: 4 (lower is better) Translates to: FFLGKGAQPQTRGHSETLQSYRG*CEASSS Trigger: GGATGAGGAAGCTTCACATCAGCCACGATATGACTG...CAGTGTTTCTGAATGTCCTCGTGTCTGTGGTTGCGCTCCTTTCCCCAGGAAAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS-3UTR GCA 90 bp | GAAGTGATTGGCCTGACCCAGACTATCCCCATATTTACAGCATTGGGCCTTCTATCAGAGAGCTGCCACTaGCATAATTTAGCAACTGAT | + |
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Preference number: 4 (lower is better) Translates to: EVIGLTQTIPIFTALGLLSESCH*HNLATD Trigger: ATCAGTTGCTAAATTATGGCAGTGGCAGCTCTCTGA...TAGAAGGCCCAATGCTGTAAATATGGGGATAGTCTGGGTCAGGCCAATCACTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS CCA 90 bp | GCGGACGCGGGGAAGGCGCGCGAGCTCTCGCCCACCGCCCCAAAGTaGCTGGAGGAGGCCGAGGAGCGGTTGACGCTGAGATCCATCCCA | + |
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Preference number: 5 (lower is better) Translates to: ADAGKARELSPTAPK*LEEAEERLTLRSIP Trigger: TGGGATGGATCTCAGCGTCAACCGCTCCTCGGCCTCCTCCAGCCACTTTGGGGCGGTGGGCGAGAGCTCGCGCGCCTTCCCCGCGTCCGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS CCA 90 bp | GGGGTCGCCTGGTCGGAAGGGGACGAAGCAGAGGGCTTGGCGCCGTaGCTGTCGCCGTTAGTGCAGGGCAGGGACTCGGGCGAGGACAGG | + |
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Preference number: 5 (lower is better) Translates to: GVAWSEGDEAEGLAP*LSPLVQGRDSGEDR Trigger: CCTGTCCTCGCCCGAGTCCCTGCCCTGCACTAACGGCGACAGCCACGGCGCCAAGCCCTCTGCTTCGTCCCCTTCCGACCAGGCGACCCC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS CCA 90 bp | GCCATGGGCTCTGGCTGTGCTCGAGCCAAGCTGGGGCTGCTTAGCTaGCTCGCCGCTTCCTCGGGCTCAGAGGACGCGCTGGCCTCGTCT | + |
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Preference number: 5 (lower is better) Translates to: AMGSGCARAKLGLLS*LAASSGSEDALASS Trigger: AGACGAGGCCAGCGCGTCCTCTGAGCCCGAGGAAGCGGCGAGCCAGCTAAGCAGCCCCAGCTTGGCTCGAGCACAGCCAGAGCCCATGGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS TCA 90 bp | CCGCTTCCTCGGGCTCAGAGGACGCGCTGGCCTCGTCTATTTCGGTaGAATTGGCGCTGGAGCTGGCTGGGGTCGCCTGGTCGGAAGGGG | + |
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Preference number: 5 (lower is better) Translates to: PLPRAQRTRWPRLFR*NWRWSWLGSPGRKG Trigger: CCCCTTCCGACCAGGCGACCCCAGCCAGCTCCAGCGCCAATTTCACCGAAATAGACGAGGCCAGCGCGTCCTCTGAGCCCGAGGAAGCGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS CCA 90 bp | CGCGCTGGCCTCGTCTATTTCGGTGAAATTGGCGCTGGAGCTGGCTaGGGTCGCCTGGTCGGAAGGGGACGAAGCAGAGGGCTTGGCGCC | + |
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Preference number: 5 (lower is better) Translates to: RAGLVYFGEIGAGAG*GRLVGRGRSRGLGA Trigger: GGCGCCAAGCCCTCTGCTTCGTCCCCTTCCGACCAGGCGACCCCAGCCAGCTCCAGCGCCAATTTCACCGAAATAGACGAGGCCAGCGCG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS-3UTR CAA 90 bp | CAGGCTCGTGGGAACTGGTCCCCAGCGGGCAGCGGCAGTGCAGGGAAGATTGGAGAGGCCGAGGAGCGGTaGACGCTGAGATCCATCCCA | + |
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Preference number: 5 (lower is better) Translates to: QARGNWSPAGSGSAGKIGEAEER*TLRSIP Trigger: TGGGATGGATCTCAGCGTCAACCGCTCCTCGGCCTC...TCCAATCTTCCCTGCACTGCCGCTGCCCGCTGGGGACCAGTTCCCACGAGCCTG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS CCA 90 bp | TCGTCTATTTCGGTGAAATTGGCGCTGGAGCTGGCTGGGGTCGCCTaGTCGGAAGGGGACGAAGCAGAGGGCTTGGCGCCGTGGCTGTCG | + |
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Preference number: 5 (lower is better) Translates to: SSISVKLALELAGVA*SEGDEAEGLAPWLS Trigger: CGACAGCCACGGCGCCAAGCCCTCTGCTTCGTCCCCTTCCGACCAGGCGACCCCAGCCAGCTCCAGCGCCAATTTCACCGAAATAGACGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS CCA 90 bp | CATATCGTGGCTGATGTGAAGCTTCCTCATCCAGGGGAATATCTGTaGAGTCTGCCCCTCGGGCGCGGCCGTAGAGGTGGCCATGGGCTC | + |
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Preference number: 5 (lower is better) Translates to: HIVADVKLPHPGEYL*SLPLGRGRRGGHGL Trigger: GAGCCCATGGCCACCTCTACGGCCGCGCCCGAGGGGCAGACTCCACAGATATTCCCCTGGATGAGGAAGCTTCACATCAGCCACGATATG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS-3UTR CAA 90 bp | TGGGAGAAAAGAGACACAGACAGTGGGCTCCATTTCCCAGGCCAGCTCAGCTGGTCTATTTCGGTGAAATaGGCGCTGGAGCTGGCTGGG | + |
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Preference number: 5 (lower is better) Translates to: WEKRDTDSGLHFPGQLSWSISVK*ALELAG Trigger: CCCAGCCAGCTCCAGCGCCAATTTCACCGAAATAGA...CCAGCTGAGCTGGCCTGGGAAATGGAGCCCACTGTCTGTGTCTCTTTTCTCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS-3UTR CAA 90 bp | ATAAATAAGTTAGAACACAGACGGGGAGGGGAAGTCACATTAAACATGCGAATTGATAGTCCGGGCCATTaGGATAACGCCCCGAGAAGG | + |
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Preference number: 5 (lower is better) Translates to: INKLEHRRGGEVTLNMRIDSPGH*DNAPRR Trigger: CCTTCTCGGGGCGTTATCCAAATGGCCCGGACTATC...AATTCGCATGTTTAATGTGACTTCCCCTCCCCGTCTGTGTTCTAACTTATTTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS CCA 72 bp | GAGCAGCTGGACGTCGCCTGCCTGAAGCGGGGTTCCTaGGCGGACGCGGGGAAGGCGCGCGAGCTCTCGCCC | + |
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Preference number: 6 (lower is better) Translates to: EQLDVACLKRGS*ADAGKARELSP Trigger: GGGCGAGAGCTCGCGCGCCTTCCCCGCGTCCGCCCAGGAACCCCGCTTCAGGCAGGCGACGTCCAGCTGCTC 75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS CAA 90 bp | GAGCTGGCTGGGGTCGCCTGGTCGGAAGGGGACGAAGCAGAGGGCTaGGCGCCGTGGCTGTCGCCGTTAGTGCAGGGCAGGGACTCGGGC | + |
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Preference number: 6 (lower is better) Translates to: ELAGVAWSEGDEAEG*APWLSPLVQGRDSG Trigger: GCCCGAGTCCCTGCCCTGCACTAACGGCGACAGCCACGGCGCCAAGCCCTCTGCTTCGTCCCCTTCCGACCAGGCGACCCCAGCCAGCTC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS CCA 72 bp | GGGAAGGCGCGCGAGCTCTCGCCCACCGCCCCAAAGTaGCTGGAGGAGGCCGAGGAGCGGTTGACGCTGAGA | + |
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Preference number: 6 (lower is better) Translates to: GKARELSPTAPK*LEEAEERLTLR Trigger: TCTCAGCGTCAACCGCTCCTCGGCCTCCTCCAGCCACTTTGGGGCGGTGGGCGAGAGCTCGCGCGCCTTCCC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS CAA 72 bp | GGGGTCGCCTGGTCGGAAGGGGACGAAGCAGAGGGCTaGGCGCCGTGGCTGTCGCCGTTAGTGCAGGGCAGG | + |
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Preference number: 6 (lower is better) Translates to: GVAWSEGDEAEG*APWLSPLVQGR Trigger: CCTGCCCTGCACTAACGGCGACAGCCACGGCGCCAAGCCCTCTGCTTCGTCCCCTTCCGACCAGGCGACCCC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS CCA 72 bp | TGGTCGGAAGGGGACGAAGCAGAGGGCTTGGCGCCGTaGCTGTCGCCGTTAGTGCAGGGCAGGGACTCGGGC | + |
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Preference number: 6 (lower is better) Translates to: WSEGDEAEGLAP*LSPLVQGRDSG Trigger: GCCCGAGTCCCTGCCCTGCACTAACGGCGACAGCCACGGCGCCAAGCCCTCTGCTTCGTCCCCTTCCGACCA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS GCA 72 bp | CCATGGGCTCTGGCTGTGCTCGAGCCAAGCTGGGGCTaGTTAGCTGGCTCGCCGCTTCCTCGGGCTCAGAGG | + |
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Preference number: 6 (lower is better) Translates to: PWALAVLEPSWG*LAGSPLPRAQR Trigger: CCTCTGAGCCCGAGGAAGCGGCGAGCCAGCTAAGCAGCCCCAGCTTGGCTCGAGCACAGCCAGAGCCCATGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS CCA 72 bp | TCGGTGAAATTGGCGCTGGAGCTGGCTGGGGTCGCCTaGTCGGAAGGGGACGAAGCAGAGGGCTTGGCGCCG | + |
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Preference number: 6 (lower is better) Translates to: SVKLALELAGVA*SEGDEAEGLAP Trigger: CGGCGCCAAGCCCTCTGCTTCGTCCCCTTCCGACCAGGCGACCCCAGCCAGCTCCAGCGCCAATTTCACCGA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS CCA 72 bp | TCTGGCTGTGCTCGAGCCAAGCTGGGGCTGCTTAGCTaGCTCGCCGCTTCCTCGGGCTCAGAGGACGCGCTG | + |
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Preference number: 6 (lower is better) Translates to: SGCARAKLGLLS*LAASSGSEDAL Trigger: CAGCGCGTCCTCTGAGCCCGAGGAAGCGGCGAGCCAGCTAAGCAGCCCCAGCTTGGCTCGAGCACAGCCAGA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS CCA 72 bp | AGGTGGCCATGGGCTCTGGCTGTGCTCGAGCCAAGCTaGGGCTGCTTAGCTGGCTCGCCGCTTCCTCGGGCT | + |
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Preference number: 6 (lower is better) Translates to: RWPWALAVLEPS*GCLAGSPLPRA Trigger: AGCCCGAGGAAGCGGCGAGCCAGCTAAGCAGCCCCAGCTTGGCTCGAGCACAGCCAGAGCCCATGGCCACCT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS TCA 72 bp | CGGGCTCAGAGGACGCGCTGGCCTCGTCTATTTCGGTaGAATTGGCGCTGGAGCTGGCTGGGGTCGCCTGGT | + |
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Preference number: 6 (lower is better) Translates to: RAQRTRWPRLFR*NWRWSWLGSPG Trigger: ACCAGGCGACCCCAGCCAGCTCCAGCGCCAATTTCACCGAAATAGACGAGGCCAGCGCGTCCTCTGAGCCCG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS CAA 90 bp | TCCTCGGGCTCAGAGGACGCGCTGGCCTCGTCTATTTCGGTGAAATaGGCGCTGGAGCTGGCTGGGGTCGCCTGGTCGGAAGGGGACGAA | + |
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Preference number: 6 (lower is better) Translates to: SSGSEDALASSISVK*ALELAGVAWSEGDE Trigger: TTCGTCCCCTTCCGACCAGGCGACCCCAGCCAGCTCCAGCGCCAATTTCACCGAAATAGACGAGGCCAGCGCGTCCTCTGAGCCCGAGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS CCA 72 bp | CTCGTCTATTTCGGTGAAATTGGCGCTGGAGCTGGCTaGGGTCGCCTGGTCGGAAGGGGACGAAGCAGAGGG | + |
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Preference number: 6 (lower is better) Translates to: LVYFGEIGAGAG*GRLVGRGRSRG Trigger: CCCTCTGCTTCGTCCCCTTCCGACCAGGCGACCCCAGCCAGCTCCAGCGCCAATTTCACCGAAATAGACGAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS CAA 72 bp | TCAGAGGACGCGCTGGCCTCGTCTATTTCGGTGAAATaGGCGCTGGAGCTGGCTGGGGTCGCCTGGTCGGAA | + |
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Preference number: 6 (lower is better) Translates to: SEDALASSISVK*ALELAGVAWSE Trigger: TTCCGACCAGGCGACCCCAGCCAGCTCCAGCGCCAATTTCACCGAAATAGACGAGGCCAGCGCGTCCTCTGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS CCA 72 bp | TCCCATTGTAATTGTAGCCGTAAGAGCCGGTGTGCATaGCAGCGGGATCCCTGTAAGAGCCGCTCAGAGAGC | + |
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Preference number: 6 (lower is better) Translates to: SHCNCSRKSRCA*QRDPCKSRSES Trigger: GCTCTCTGAGCGGCTCTTACAGGGATCCCGCTGCCATGCACACCGGCTCTTACGGCTACAATTACAATGGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS TCA 72 bp | GGGCCCTTTTTCCGTCTGGCCCAGTCATATCGTGGCTaGTGTGAAGCTTCCTCATCCAGGGGAATATCTGTG | + |
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Preference number: 6 (lower is better) Translates to: GPFFRLAQSYRG*CEASSSRGISV Trigger: CACAGATATTCCCCTGGATGAGGAAGCTTCACATCAGCCACGATATGACTGGGCCAGACGGAAAAAGGGCCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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| CDS TCA 72 bp | CTTTTTCCGTCTGGCCCAGTCATATCGTGGCTGATGTaGAGCTTCCTCATCCAGGGGAATATCTGTGGAGTC | + |
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Preference number: 6 (lower is better) Translates to: LFPSGPVISWLM*SFLIQGNICGV Trigger: GACTCCACAGATATTCCCCTGGATGAGGAAGCTTCACATCAGCCACGATATGACTGGGCCAGACGGAAAAAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049272.5 |
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