Pregenerated sensors for HOXB4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038692Ensembl transcript IDs: ENSMUST00000049241.9
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCTGGCGTGATTAAAGATGAAGCCTGGATCCATCTTCACCAAAGCTaGAAACCAGGCGCAGCAGACTCCTCCATTTCTCTTCTGTCTTTT | + |
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Preference number: 1 (lower is better) Translates to: PGVIKDEAWIHLHQS*KPGAADSSISLLSF Trigger: AAAAGACAGAAGAGAAATGGAGGAGTCTGCTGCGCCTGGTTTTCAGCTTTGGTGAAGATGGATCCAGGCTTCATCTTTAATCACGCCAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049241.9 |
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| 3UTR-3UTR CCA 90 bp | GATTTGGGAACCCACGTTGTGCAGACTGCCCTTCAATTCCCTTCTGTTCCCCCTGGCAGCGGCCGAGCCTaGCCTCATTTGTTAGCCAAG | + |
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Preference number: 2 (lower is better) Translates to: DLGTHVVQTALQFPSVPPGSGRA*PHLLAK Trigger: CTTGGCTAACAAATGAGGCCAGGCTCGGCCGCTGCC...AGGGGGAACAGAAGGGAATTGAAGGGCAGTCTGCACAACGTGGGTTCCCAAATC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049241.9 |
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| 3UTR-3UTR TCA 90 bp | GATTTGGGAACCCACGTTGTGCAGACTGCCCTTCAATTCCCTTCTGTTCCCCCTCATCTTCACCAAAGCTaGAAACCAGGCGCAGCAGAC | + |
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Preference number: 2 (lower is better) Translates to: DLGTHVVQTALQFPSVPPHLHQS*KPGAAD Trigger: GTCTGCTGCGCCTGGTTTTCAGCTTTGGTGAAGATG...AGGGGGAACAGAAGGGAATTGAAGGGCAGTCTGCACAACGTGGGTTCCCAAATC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049241.9 |
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| 3UTR CAA 90 bp | ATAAACGATGCAACAATGATAACAACGGGAGAGGGTTCTGCAACATaGTCCTTCCAGAGTAGGAGGGCCACAGTATTTTATTTCCTAATT | + |
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Preference number: 2 (lower is better) Translates to: INDATMITTGEGSAT*SFQSRRATVFYFLI Trigger: AATTAGGAAATAAAATACTGTGGCCCTCCTACTCTGGAAGGACAATGTTGCAGAACCCTCTCCCGTTGTTATCATTGTTGCATCGTTTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049241.9 |
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| 3UTR CCA 72 bp | CCCTTCAATTCCCTTCTGTTCCCCCTTCTAAGTCTATaGTGGAAGGGAGTGAGCAGTCTTCCCACCCACCCC | + |
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Preference number: 3 (lower is better) Translates to: PFNSLLFPLLSL*WKGVSSLPTHP Trigger: GGGGTGGGTGGGAAGACTGCTCACTCCCTTCCACCATAGACTTAGAAGGGGGAACAGAAGGGAATTGAAGGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049241.9 |
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| 3UTR CCA 72 bp | TTCAATTCCCTTCTGTTCCCCCTTCTAAGTCTATGGTaGAAGGGAGTGAGCAGTCTTCCCACCCACCCCCAC | + |
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Preference number: 3 (lower is better) Translates to: FNSLLFPLLSLW*KGVSSLPTHPH Trigger: GTGGGGGTGGGTGGGAAGACTGCTCACTCCCTTCCACCATAGACTTAGAAGGGGGAACAGAAGGGAATTGAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000049241.9 |
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| 3UTR GCA 72 bp | TTTATTTCTTGGGCTCGGATTTGGGAACCCACGTTGTaGAGACTGCCCTTCAATTCCCTTCTGTTCCCCCTT | + |
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Preference number: 3 (lower is better) Translates to: FISWARIWEPTL*RLPFNSLLFPL Trigger: AAGGGGGAACAGAAGGGAATTGAAGGGCAGTCTGCACAACGTGGGTTCCCAAATCCGAGCCCAAGAAATAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049241.9 |
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| CDS-3UTR GCA 90 bp | GGCGGCAGCGGCCGAGCCTGGCCTCATTTGTTAGCCAAGTGTCGAGGTAATGGTCGGCTGCGCCCGCGGTaGCACCCGAGCGGATCTTGG | + |
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Preference number: 4 (lower is better) Translates to: GGSGRAWPHLLAKCRGNGRLRPR*HPSGSW Trigger: CCAAGATCCGCTCGGGTGGCACCGCGGGCGCAGCCG...ACCATTACCTCGACACTTGGCTAACAAATGAGGCCAGGCTCGGCCGCTGCCGCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049241.9 |
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| CDS-3UTR CCA 90 bp | GATTTGGGAACCCACGTTGTGCAGACTGCCCTTCAATTCCCTTCTGTTCCCCCTGAGGGCCCCGGCTGTTaGCTGCACTGGAGCCCGAGG | + |
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Preference number: 4 (lower is better) Translates to: DLGTHVVQTALQFPSVPPEGPGC*LHWSPR Trigger: CCTCGGGCTCCAGTGCAGCCAACAGCCGGGGCCCTC...AGGGGGAACAGAAGGGAATTGAAGGGCAGTCTGCACAACGTGGGTTCCCAAATC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049241.9 |
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| CDS-3UTR CCA 90 bp | AGGAAGAAAGCAAGAGACTCGAATCTTGTCTCCGAAGGACTTTACCCGGCTCCCGGATGCAGGGGGTTCTaGGCGCAGGGAGGCGGCGGG | + |
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Preference number: 4 (lower is better) Translates to: RKKARDSNLVSEGLYPAPGCRGF*AQGGGG Trigger: CCCGCCGCCTCCCTGCGCCCAGAACCCCCTGCATCC...GGGAGCCGGGTAAAGTCCTTCGGAGACAAGATTCGAGTCTCTTGCTTTCTTCCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049241.9 |
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| CDS-3UTR CCA 90 bp | GGCGGCAGCGGCCGAGCCTGGCCTCATTTGTTAGCCAAGTGTCGAGGTAATGGTCCCCGCCGGCGTAATTaGGGTTTACCGTGCTCACGT | + |
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Preference number: 4 (lower is better) Translates to: GGSGRAWPHLLAKCRGNGPRRRN*GLPCSR Trigger: ACGTGAGCACGGTAAACCCCAATTACGCCGGCGGGG...ACCATTACCTCGACACTTGGCTAACAAATGAGGCCAGGCTCGGCCGCTGCCGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049241.9 |
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| CDS-3UTR GCA 90 bp | TCTTCACCAAAGCTGAAAACCAGGCGCAGCAGACTCCTCCATTTCTCTTCTGTCTGGGACGGGCTGGGATaGAGGGGGTTCTGGGCGCAG | + |
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Preference number: 4 (lower is better) Translates to: SSPKLKTRRSRLLHFSSVWDGLG*RGFWAQ Trigger: CTGCGCCCAGAACCCCCTGCATCCCAGCCCGTCCCA...GACAGAAGAGAAATGGAGGAGTCTGCTGCGCCTGGTTTTCAGCTTTGGTGAAGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049241.9 |
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| CDS-3UTR GCA 90 bp | CCGTCTTCTCCTCGGCAGAGTAAACAAGACAGATGGGCCCGGGCCTGGCGTGATTGCTCACGTGAACTTTaGGCATCCAGGGGTAGACGA | + |
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Preference number: 4 (lower is better) Translates to: PSSPRQSKQDRWARAWRDCSREL*ASRGRR Trigger: TCGTCTACCCCTGGATGCGCAAAGTTCACGTGAGCA...ATCACGCCAGGCCCGGGCCCATCTGTCTTGTTTACTCTGCCGAGGAGAAGACGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049241.9 |
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| CDS-3UTR TCA 90 bp | GATGGGCCCGGGCCTGGCGTGATTAAAGATGAAGCCTGGATCCATCTTCACCAATTTACCGTGCTCACGTaGACTTTGCGCATCCAGGGG | + |
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Preference number: 4 (lower is better) Translates to: DGPGPGVIKDEAWIHLHQFTVLT*TLRIQG Trigger: CCCCTGGATGCGCAAAGTTCACGTGAGCACGGTAAA...TTGGTGAAGATGGATCCAGGCTTCATCTTTAATCACGCCAGGCCCGGGCCCATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049241.9 |
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| CDS-3UTR CCA 90 bp | TCTTCACCAAAGCTGAAAACCAGGCGCAGCAGACTCCTCCATTTCTCTTCTGTCTCTTTGCACGCGGAGTaGGACGGGCTGGGATGCAGG | + |
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Preference number: 4 (lower is better) Translates to: SSPKLKTRRSRLLHFSSVSLHAE*DGLGCR Trigger: CCTGCATCCCAGCCCGTCCCACTCCGCGTGCAAAGA...GACAGAAGAGAAATGGAGGAGTCTGCTGCGCCTGGTTTTCAGCTTTGGTGAAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049241.9 |
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| CDS-3UTR TCA 90 bp | GGCGGCAGCGGCCGAGCCTGGCCTCATTTGTTAGCCAAGTGTCGAGGTAATGGTGGGGTCGACATAGTTTaGGTTGATCAAAAAGGAACT | + |
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Preference number: 4 (lower is better) Translates to: GGSGRAWPHLLAKCRGNGGVDIV*VDQKGT Trigger: AGTTCCTTTTTGATCAACTCAAACTATGTCGACCCC...ACCATTACCTCGACACTTGGCTAACAAATGAGGCCAGGCTCGGCCGCTGCCGCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049241.9 |
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| CDS-3UTR GCA 90 bp | AATAAACGATGCAACAATGATAACAACGGGAGAGGGTTCTGCAACATTGTCCTTGCCCCGGCTGTTGGCTaGACTGGAGCCCGAGGGGAC | + |
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Preference number: 4 (lower is better) Translates to: NKRCNNDNNGRGFCNIVLAPAVG*TGARGD Trigger: GTCCCCTCGGGCTCCAGTGCAGCCAACAGCCGGGGC...AAGGACAATGTTGCAGAACCCTCTCCCGTTGTTATCATTGTTGCATCGTTTATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049241.9 |
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| CDS-3UTR CCA 90 bp | TCTTGTCTCCGAAGGACTTTACCCGGCTCCCTTATTGTCCTTTCTATAAATAAGCGGAGTGGGACGGGCTaGGATGCAGGGGGTTCTGGG | + |
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Preference number: 4 (lower is better) Translates to: SCLRRTLPGSLIVLSINKRSGTG*DAGGSG Trigger: CCCAGAACCCCCTGCATCCCAGCCCGTCCCACTCCG...CTTATTTATAGAAAGGACAATAAGGGAGCCGGGTAAAGTCCTTCGGAGACAAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049241.9 |
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| CDS-3UTR GCA 90 bp | TTTCATTTTCATTTATTTCTTGGGCTCGGATTTGGGAACCCACGTTGTGCAGACAGACGACGGGCTCTTTaGACGCGGAGTGGGACGGGC | + |
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Preference number: 4 (lower is better) Translates to: FHFHLFLGLGFGNPRCADRRRAL*TRSGTG Trigger: GCCCGTCCCACTCCGCGTGCAAAGAGCCCGTCGTCT...GTCTGCACAACGTGGGTTCCCAAATCCGAGCCCAAGAAATAAATGAAAATGAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049241.9 |
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| CDS-3UTR CCA 90 bp | AATAAACGATGCAACAATGATAACAACGGGAGAGGGTTCTGCAACATTGTCCTTGGCTGTTGGCTGCACTaGAGCCCGAGGGGACAGCCC | + |
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Preference number: 4 (lower is better) Translates to: NKRCNNDNNGRGFCNIVLGCWLH*SPRGQP Trigger: GGGCTGTCCCCTCGGGCTCCAGTGCAGCCAACAGCC...AAGGACAATGTTGCAGAACCCTCTCCCGTTGTTATCATTGTTGCATCGTTTATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049241.9 |
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| CDS-3UTR CCA 90 bp | AATAAACGATGCAACAATGATAACAACGGGAGAGGGTTCTGCAACATTGTCCTTGACAGGCAGAGCGCGTaGGCGATCTCCACCCTCCGG | + |
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Preference number: 4 (lower is better) Translates to: NKRCNNDNNGRGFCNIVLDRQSA*AISTLR Trigger: CCGGAGGGTGGAGATCGCCCACGCGCTCTGCCTGTC...AAGGACAATGTTGCAGAACCCTCTCCCGTTGTTATCATTGTTGCATCGTTTATT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049241.9 |
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| CDS-3UTR CCA 90 bp | GAAGAAAGCAAGAGACTCGAATCTTGTCTCCGAAGGACTTTACCCGGCTCCCTTCACCCGAGCGGATCTTaGTGTTGGGCAACTTGTGGT | + |
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Preference number: 4 (lower is better) Translates to: EESKRLESCLRRTLPGSLHPSGS*CWATCG Trigger: ACCACAAGTTGCCCAACACCAAGATCCGCTCGGGTG...AAGGGAGCCGGGTAAAGTCCTTCGGAGACAAGATTCGAGTCTCTTGCTTTCTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049241.9 |
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| 3UTR CAA 72 bp | TCATTTATTTCTTGGGCTCGGATTTGGGAACCCACGTaGTGCAGACTGCCCTTCAATTCCCTTCTGTTCCCC | + |
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Preference number: 4 (lower is better) Translates to: SFISWARIWEPT*CRLPFNSLLFP Trigger: GGGGAACAGAAGGGAATTGAAGGGCAGTCTGCACAACGTGGGTTCCCAAATCCGAGCCCAAGAAATAAATGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049241.9 |
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| CDS-3UTR GCA 90 bp | TCTTGTCTCCGAAGGACTTTACCCGGCTCCCTTATTGTCCTTTCTATAAATAAGAATTGGGGTTTACCGTaGTCACGTGAACTTTGCGCA | + |
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Preference number: 4 (lower is better) Translates to: SCLRRTLPGSLIVLSINKNWGLP*SRELCA Trigger: TGCGCAAAGTTCACGTGAGCACGGTAAACCCCAATT...CTTATTTATAGAAAGGACAATAAGGGAGCCGGGTAAAGTCCTTCGGAGACAAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049241.9 |
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| CDS-3UTR CAA 90 bp | CCGTCTTCTCCTCGGCAGAGTAAACAAGACAGATGGGCCCGGGCCTGGCGTGATGGAGGGCCCCGGCTGTaGGCTGCACTGGAGCCCGAG | + |
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Preference number: 5 (lower is better) Translates to: PSSPRQSKQDRWARAWRDGGPRL*AALEPE Trigger: CTCGGGCTCCAGTGCAGCCAACAGCCGGGGCCCTCC...ATCACGCCAGGCCCGGGCCCATCTGTCTTGTTTACTCTGCCGAGGAGAAGACGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049241.9 |
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| CDS-3UTR CAA 90 bp | GAAGAAAGCAAGAGACTCGAATCTTGTCTCCGAAGGACTTTACCCGGCTCCCTTCCACCCGAGCGGATCTaGGTGTTGGGCAACTTGTGG | + |
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Preference number: 5 (lower is better) Translates to: EESKRLESCLRRTLPGSLPPERI*VLGNLW Trigger: CCACAAGTTGCCCAACACCAAGATCCGCTCGGGTGG...AAGGGAGCCGGGTAAAGTCCTTCGGAGACAAGATTCGAGTCTCTTGCTTTCTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049241.9 |
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| CDS GCA 72 bp | GAACTTTGCGCATCCAGGGGTAGACGACGGGCTCTTTaGACGCGGAGTGGGACGGGCTGGGATGCAGGGGGT | + |
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Preference number: 6 (lower is better) Translates to: ELCASRGRRRAL*TRSGTGWDAGG Trigger: ACCCCCTGCATCCCAGCCCGTCCCACTCCGCGTGCAAAGAGCCCGTCGTCTACCCCTGGATGCGCAAAGTTC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049241.9 |
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