Pregenerated sensors for HOXB3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048763Ensembl transcript IDs: ENSMUST00000055334.3, ENSMUST00000093944.10
Found 103 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCTGTCTTGGCTCCCTCTACCCGACTCCACGTCACCTCTCCAATCTaGAATTCCCACTTGGTAGTGCTGGAACCCTGGGAACCCTGGGAT | + |
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Preference number: 1 (lower is better) Translates to: PVLAPSTRLHVTSPI*NSHLVVLEPWEPWD Trigger: ATCCCAGGGTTCCCAGGGTTCCAGCACTACCAAGTGGGAATTTCAGATTGGAGAGGTGACGTGGAGTCGGGTAGAGGGAGCCAAGACAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
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| 3UTR GCA 90 bp | TGGAACCCTGGGAACCCTGGGATTGATGTGGTCCCGTCTCCAACCTaGTGTGGATTCCTTTCCAAGGGTTGTTGGCAGACAGATGGAACC | + |
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Preference number: 1 (lower is better) Translates to: WNPGNPGIDVVPSPT*CGFLSKGCWQTDGT Trigger: GGTTCCATCTGTCTGCCAACAACCCTTGGAAAGGAATCCACAGCAGGTTGGAGACGGGACCACATCAATCCCAGGGTTCCCAGGGTTCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
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| 3UTR CCA 90 bp | GTGGTCCCGTCTCCAACCTGCTGTGGATTCCTTTCCAAGGGTTGTTaGCAGACAGATGGAACCAGGCATGGAGGACTTAAAAGACAGCCC | + |
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Preference number: 1 (lower is better) Translates to: VVPSPTCCGFLSKGC*QTDGTRHGGLKRQP Trigger: GGGCTGTCTTTTAAGTCCTCCATGCCTGGTTCCATCTGTCTGCCAACAACCCTTGGAAAGGAATCCACAGCAGGTTGGAGACGGGACCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
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| 3UTR CCA 90 bp | TTCCCACTTGGTAGTGCTGGAACCCTGGGAACCCTGGGATTGATGTaGTCCCGTCTCCAACCTGCTGTGGATTCCTTTCCAAGGGTTGTT | + |
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Preference number: 1 (lower is better) Translates to: FPLGSAGTLGTLGLM*SRLQPAVDSFPRVV Trigger: AACAACCCTTGGAAAGGAATCCACAGCAGGTTGGAGACGGGACCACATCAATCCCAGGGTTCCCAGGGTTCCAGCACTACCAAGTGGGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
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| 3UTR GCA 90 bp | CAAGACTGTCCTGTCAGGAACTGGAGCAAGGTCCACAGGTCCAGCTaGAGCACCTGCCAGGACAGACAGTTTGTTCAAATATACCCTGTT | + |
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Preference number: 1 (lower is better) Translates to: QDCPVRNWSKVHRSS*STCQDRQFVQIYPV Trigger: AACAGGGTATATTTGAACAAACTGTCTGTCCTGGCAGGTGCTGCAGCTGGACCTGTGGACCTTGCTCCAGTTCCTGACAGGACAGTCTTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
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| 3UTR CAA 90 bp | CTGAAATTCCCACTTGGTAGTGCTGGAACCCTGGGAACCCTGGGATaGATGTGGTCCCGTCTCCAACCTGCTGTGGATTCCTTTCCAAGG | + |
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Preference number: 2 (lower is better) Translates to: LKFPLGSAGTLGTLG*MWSRLQPAVDSFPR Trigger: CCTTGGAAAGGAATCCACAGCAGGTTGGAGACGGGACCACATCAATCCCAGGGTTCCCAGGGTTCCAGCACTACCAAGTGGGAATTTCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
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| 3UTR-3UTR CCA 90 bp | GGACAGACAGTTTGTTCAAATATACCCTGTTTTCACGTTAAGTCAAGAGAAGAAGGGAGTGGGATGGGGTaGGAGCTGAGAGACTGGAGA | + |
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Preference number: 2 (lower is better) Translates to: GQTVCSNIPCFHVKSREEGSGMG*ELRDWR Trigger: TCTCCAGTCTCTCAGCTCCCACCCCATCCCACTCCC...TTCTTCTCTTGACTTAACGTGAAAACAGGGTATATTTGAACAAACTGTCTGTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
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| 3UTR-3UTR GCA 90 bp | GGACAGACAGTTTGTTCAAATATACCCTGTTTTCACGTTAAGTCAAGAGAAGAACTTCTCTGCCCTGCTTaGCTGTCTTGGCTCCCTCTA | + |
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Preference number: 2 (lower is better) Translates to: GQTVCSNIPCFHVKSREELLCPA*LSWLPL Trigger: TAGAGGGAGCCAAGACAGGCAAGCAGGGCAGAGAAG...TTCTTCTCTTGACTTAACGTGAAAACAGGGTATATTTGAACAAACTGTCTGTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
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| 3UTR-3UTR GCA 90 bp | AAGCTTCAGGGAAGTAGGAGAGAAACATACTTTGTGCCCTTCGATTTAAATGTATTGAATGTGCTTCTCTaGCCTGCTTGCCTGTCTTGG | + |
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Preference number: 2 (lower is better) Translates to: KLQGSRRETYFVPFDLNVLNVLL*PACLSW Trigger: CCAAGACAGGCAAGCAGGGCAGAGAAGCACATTCAA...TACATTTAAATCGAAGGGCACAAAGTATGTTTCTCTCCTACTTCCCTGAAGCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
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| 3UTR-3UTR CCA 90 bp | AAGCTTCAGGGAAGTAGGAGAGAAACATACTTTGTGCCCTTCGATTTAAATGTAGTCTCCAACCTGCTGTaGATTCCTTTCCAAGGGTTG | + |
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Preference number: 2 (lower is better) Translates to: KLQGSRRETYFVPFDLNVVSNLL*IPFQGL Trigger: CAACCCTTGGAAAGGAATCCACAGCAGGTTGGAGAC...TACATTTAAATCGAAGGGCACAAAGTATGTTTCTCTCCTACTTCCCTGAAGCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
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| 3UTR-3UTR GCA 90 bp | CAGTTTGTTCAAATATACCCTGTTTTCACGTTAAGTCAAGAGAAGAACAGAAGTGTCCCGTCTCCAACCTaGTGTGGATTCCTTTCCAAG | + |
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Preference number: 2 (lower is better) Translates to: QFVQIYPVFTLSQEKNRSVPSPT*CGFLSK Trigger: CTTGGAAAGGAATCCACAGCAGGTTGGAGACGGGAC...ACTTCTGTTCTTCTCTTGACTTAACGTGAAAACAGGGTATATTTGAACAAACTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
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| 3UTR-3UTR TCA 90 bp | GGACAGACAGTTTGTTCAAATATACCCTGTTTTCACGTTAAGTCAAGAGAAGAAGTCACCTCTCCAATCTaGAATTCCCACTTGGTAGTG | + |
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Preference number: 2 (lower is better) Translates to: GQTVCSNIPCFHVKSREEVTSPI*NSHLVV Trigger: CACTACCAAGTGGGAATTTCAGATTGGAGAGGTGAC...TTCTTCTCTTGACTTAACGTGAAAACAGGGTATATTTGAACAAACTGTCTGTCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
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| 3UTR TCA 72 bp | CACTTGGTAGTGCTGGAACCCTGGGAACCCTGGGATTaGTGTGGTCCCGTCTCCAACCTGCTGTGGATTCCT | + |
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Preference number: 3 (lower is better) Translates to: HLVVLEPWEPWD*CGPVSNLLWIP Trigger: AGGAATCCACAGCAGGTTGGAGACGGGACCACATCAATCCCAGGGTTCCCAGGGTTCCAGCACTACCAAGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
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| 3UTR CCA 72 bp | GGTAGTGCTGGAACCCTGGGAACCCTGGGATTGATGTaGTCCCGTCTCCAACCTGCTGTGGATTCCTTTCCA | + |
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Preference number: 3 (lower is better) Translates to: GSAGTLGTLGLM*SRLQPAVDSFP Trigger: TGGAAAGGAATCCACAGCAGGTTGGAGACGGGACCACATCAATCCCAGGGTTCCCAGGGTTCCAGCACTACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
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| 3UTR CCA 72 bp | GTGTTGAATGTGCTTCTCTGCCCTGCTTGCCTGTCTTaGCTCCCTCTACCCGACTCCACGTCACCTCTCCAA | + |
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Preference number: 3 (lower is better) Translates to: VLNVLLCPACLS*LPLPDSTSPLQ Trigger: TTGGAGAGGTGACGTGGAGTCGGGTAGAGGGAGCCAAGACAGGCAAGCAGGGCAGAGAAGCACATTCAACAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
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| 3UTR TCA 72 bp | GCTCCCTCTACCCGACTCCACGTCACCTCTCCAATCTaGAATTCCCACTTGGTAGTGCTGGAACCCTGGGAA | + |
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Preference number: 3 (lower is better) Translates to: APSTRLHVTSPI*NSHLVVLEPWE Trigger: TTCCCAGGGTTCCAGCACTACCAAGTGGGAATTTCAGATTGGAGAGGTGACGTGGAGTCGGGTAGAGGGAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
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| 3UTR GCA 72 bp | GGGAACCCTGGGATTGATGTGGTCCCGTCTCCAACCTaGTGTGGATTCCTTTCCAAGGGTTGTTGGCAGACA | + |
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Preference number: 3 (lower is better) Translates to: GNPGIDVVPSPT*CGFLSKGCWQT Trigger: TGTCTGCCAACAACCCTTGGAAAGGAATCCACAGCAGGTTGGAGACGGGACCACATCAATCCCAGGGTTCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
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| 3UTR CCA 72 bp | TCTCCAACCTGCTGTGGATTCCTTTCCAAGGGTTGTTaGCAGACAGATGGAACCAGGCATGGAGGACTTAAA | + |
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Preference number: 3 (lower is better) Translates to: SPTCCGFLSKGC*QTDGTRHGGLK Trigger: TTTAAGTCCTCCATGCCTGGTTCCATCTGTCTGCCAACAACCCTTGGAAAGGAATCCACAGCAGGTTGGAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
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| 3UTR CCA 72 bp | ATGATAGATATAGTAAGAAGCCTAACAGATGGGGGATaGGGGGAGTTGAAGCTTCAGGGAAGTAGGAGAGAA | + |
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Preference number: 3 (lower is better) Translates to: MIDIVRSLTDGG*GELKLQGSRRE Trigger: TTCTCTCCTACTTCCCTGAAGCTTCAACTCCCCCCATCCCCCATCTGTTAGGCTTCTTACTATATCTATCAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
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| 3UTR TCA 72 bp | ATATATATGAAAATGTTCACTAGAACACACGCTTTTTaGGCGAAGCTGGACTTTCTGCAGGCCCAGACATCT | + |
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Preference number: 3 (lower is better) Translates to: IYMKMFTRTHAF*AKLDFLQAQTS Trigger: AGATGTCTGGGCCTGCAGAAAGTCCAGCTTCGCTCAAAAAGCGTGTGTTCTAGTGAACATTTTCATATATAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
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| 3UTR TCA 72 bp | TTAACTTCTTATCTCTACAAATTCGGGACTATACAGTaGCATTTAGGAGCTGAGTTCATGCCTTTTAGAACT | + |
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Preference number: 3 (lower is better) Translates to: LTSYLYKFGTIQ*HLGAEFMPFRT Trigger: AGTTCTAAAAGGCATGAACTCAGCTCCTAAATGTCACTGTATAGTCCCGAATTTGTAGAGATAAGAAGTTAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
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| CDS-3UTR CCA 90 bp | CCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTAACCTCACCCCTCCCGACTGCCCTGCATGGTaGGCGTCCCGTAGGCGCCCC | + |
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Preference number: 4 (lower is better) Translates to: PRPSPKSAVSLALNLTPPDCPAW*ASRRRP Trigger: GGGGCGCCTACGGGACGCCCACCATGCAGGGCAGTC...GGGAGGGGTGAGGTTAAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGG 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
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| CDS-3UTR CCA 90 bp | CCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTAACCTCACCCCTCCCCCGGACTGCCCTGCATaGTGGGCGTCCCGTAGGCGC | + |
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Preference number: 4 (lower is better) Translates to: PRPSPKSAVSLALNLTPPPDCPA*WASRRR Trigger: GCGCCTACGGGACGCCCACCATGCAGGGCAGTCCGG...GGGAGGGGTGAGGTTAAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGG 72% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
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| CDS-3UTR GCA 90 bp | CCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTAACCTCACCCCTCCCGCGTTGCCCAGGGACTaGAGAGAACACGCTGAGCGC | + |
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Preference number: 4 (lower is better) Translates to: PRPSPKSAVSLALNLTPPALPRD*REHAER Trigger: GCGCTCAGCGTGTTCTCTGCAGTCCCTGGGCAACGC...GGGAGGGGTGAGGTTAAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
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| CDS-3UTR GCA 90 bp | CCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTAACCTCACCCCTCCCCCACATACACCGGACTaGCCTGCATGGTGGGCGTCC | + |
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Preference number: 4 (lower is better) Translates to: PRPSPKSAVSLALNLTPPPHTPD*PAWWAS Trigger: GGACGCCCACCATGCAGGGCAGTCCGGTGTATGTGG...GGGAGGGGTGAGGTTAAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
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| CDS-3UTR CCA 90 bp | CCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTAACCTCACCCCTCCCGCGCCCCCGTTAGCTTaGAGGACGTGGGGCTCATAC | + |
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Preference number: 4 (lower is better) Translates to: PRPSPKSAVSLALNLTPPAPPLA*RTWGSY Trigger: GTATGAGCCCCACGTCCTCCAAGCTAACGGGGGCGC...GGGAGGGGTGAGGTTAAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
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| CDS-3UTR CCA 90 bp | GACTCTAAACCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTAACCTCCCGGACTGCCCTGCATaGTGGGCGTCCCGTAGGCGC | + |
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Preference number: 4 (lower is better) Translates to: DSKPRPSPKSAVSLALNLPDCPA*WASRRR Trigger: GCGCCTACGGGACGCCCACCATGCAGGGCAGTCCGG...GAGGTTAAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGGTTTAGAGTC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
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| CDS-3UTR TCA 90 bp | CCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTAACCTCACCCCTCCCAGTGTAAGGCGTTCATaGAGCCGGCCGTGGACTGCA | + |
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Preference number: 4 (lower is better) Translates to: PRPSPKSAVSLALNLTPPSVRRS*SRPWTA Trigger: TGCAGTCCACGGCCGGCTTCATGAACGCCTTACACT...GGGAGGGGTGAGGTTAAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
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| CDS-3UTR GCA 90 bp | TTTCAGGACTCTAAACCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTCGCTTGTGTACGCCGTaGGCGCCCGCTTGGACGCGG | + |
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Preference number: 4 (lower is better) Translates to: FQDSKPRPSPKSAVSLALRLCTP*APAWTR Trigger: CCGCGTCCAAGCGGGCGCGCACGGCGTACACAAGCG...AAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGGTTTAGAGTCCTGAAA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
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| CDS-3UTR CCA 90 bp | CCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTAACCTCACCCCTCCCTTTGCCGAAAGCTGGTaGGGACGGGCTGTCGTAGCT | + |
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Preference number: 4 (lower is better) Translates to: PRPSPKSAVSLALNLTPPFAESW*GRAVVA Trigger: AGCTACGACAGCCCGTCCCCACCAGCTTTCGGCAAA...GGGAGGGGTGAGGTTAAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
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| CDS-3UTR GCA 90 bp | CCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTAACCTCACCCCTCCCTCCGAAGAGCGCAGCTaGGGTGTTGTCGTAGTAGGT | + |
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Preference number: 4 (lower is better) Translates to: PRPSPKSAVSLALNLTPPSEERS*GVVVVG Trigger: ACCTACTACGACAACACCGCAGCTGCGCTCTTCGGA...GGGAGGGGTGAGGTTAAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
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| CDS-3UTR GCA 90 bp | CCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTAACCTCACCCCTCCCAGCCGAAACCATTGCTaGCAGGGTACGAGGAGTAGC | + |
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Preference number: 4 (lower is better) Translates to: PRPSPKSAVSLALNLTPPSRNHC*QGTRSS Trigger: GCTACTCCTCGTACCCTGGCAGCAATGGTTTCGGCT...GGGAGGGGTGAGGTTAAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
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| CDS-3UTR TCA 90 bp | GACTCTAAACCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTAACCTCGGTGGGAAAGGTGATTaGGGCCGTAGAGGGAGGGGC | + |
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Preference number: 4 (lower is better) Translates to: DSKPRPSPKSAVSLALNLGGKGD*GRRGRG Trigger: GCCCCTCCCTCTACGGCCTCAATCACCTTTCCCACC...GAGGTTAAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGGTTTAGAGTC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
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| CDS-3UTR CCA 90 bp | CAGGACTCTAAACCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTAACCTTGCTCTTGGCATGTaGGGCGGCGTTGCCCAGGGA | + |
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Preference number: 4 (lower is better) Translates to: QDSKPRPSPKSAVSLALNLALGM*GGVAQG Trigger: TCCCTGGGCAACGCCGCCCCACATGCCAAGAGCAAG...GTTAAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGGTTTAGAGTCCTG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
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| CDS-3UTR GCA 90 bp | TTCAGGACTCTAAACCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTACATGTGGGGCGGCGTTaGCCAGGGACTGCAGAGAAC | + |
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Preference number: 4 (lower is better) Translates to: FRTLNRAHPPSPPSPWPLHVGRR*PGTAEN Trigger: GTTCTCTGCAGTCCCTGGGCAACGCCGCCCCACATG...TAAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGGTTTAGAGTCCTGAA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
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| CDS-3UTR CCA 90 bp | TTCAGGACTCTAAACCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTAGCGCCCCCGTTAGCTTaGAGGACGTGGGGCTCATAC | + |
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Preference number: 4 (lower is better) Translates to: FRTLNRAHPPSPPSPWPLAPPLA*RTWGSY Trigger: GTATGAGCCCCACGTCCTCCAAGCTAACGGGGGCGC...TAAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGGTTTAGAGTCCTGAA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
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| CDS-3UTR TCA 90 bp | TTTCAGGACTCTAAACCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTCTGCAGAGAACACGCTaGGCGCTGGTAGTCACCCTC | + |
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Preference number: 4 (lower is better) Translates to: FQDSKPRPSPKSAVSLALLQRTR*ALVVTL Trigger: GAGGGTGACTACCAGCGCTCAGCGTGTTCTCTGCAG...AAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGGTTTAGAGTCCTGAAA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
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| CDS-3UTR TCA 90 bp | GACTCTAAACCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTAACCTCAGTGTAAGGCGTTCATaGAGCCGGCCGTGGACTGCA | + |
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Preference number: 4 (lower is better) Translates to: DSKPRPSPKSAVSLALNLSVRRS*SRPWTA Trigger: TGCAGTCCACGGCCGGCTTCATGAACGCCTTACACT...GAGGTTAAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGGTTTAGAGTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
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| CDS-3UTR GCA 90 bp | TTTCAGGACTCTAAACCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTTCTACCCTGAGGCGGTaGGTGGTGAGAGGAGAGGTC | + |
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Preference number: 4 (lower is better) Translates to: FQDSKPRPSPKSAVSLALSTLRR*VVRGEV Trigger: GACCTCTCCTCTCACCACGCACCGCCTCAGGGTAGA...AAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGGTTTAGAGTCCTGAAA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
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| CDS-3UTR CCA 90 bp | GACTCTAAACCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTAACCTCACGGGCTGTCGTAGCTaGGGGTCATGGAGTGTAAGG | + |
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Preference number: 4 (lower is better) Translates to: DSKPRPSPKSAVSLALNLTGCRS*GSWSVR Trigger: CCTTACACTCCATGACCCCCAGCTACGACAGCCCGT...GAGGTTAAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGGTTTAGAGTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
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| CDS-3UTR CCA 90 bp | GACTCTAAACCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTAACCTCTTTGCCGAAAGCTGGTaGGGACGGGCTGTCGTAGCT | + |
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Preference number: 4 (lower is better) Translates to: DSKPRPSPKSAVSLALNLFAESW*GRAVVA Trigger: AGCTACGACAGCCCGTCCCCACCAGCTTTCGGCAAA...GAGGTTAAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGGTTTAGAGTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
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| CDS-3UTR CCA 90 bp | TTTCAGGACTCTAAACCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTGCCTTTGCCGAAAGCTaGTGGGGACGGGCTGTCGTA | + |
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Preference number: 4 (lower is better) Translates to: FQDSKPRPSPKSAVSLALAFAES*WGRAVV Trigger: TACGACAGCCCGTCCCCACCAGCTTTCGGCAAAGGC...AAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGGTTTAGAGTCCTGAAA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
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| CDS-3UTR TCA 90 bp | CAGGACTCTAAACCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTAACGGAATATCTGTTTGGTaGGGGTGGAGTTGGAGCCGG | + |
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Preference number: 4 (lower is better) Translates to: QDSKPRPSPKSAVSLALNGISVW*GWSWSR Trigger: CCGGCTCCAACTCCACCCTCACCAAACAGATATTCC...GTTAAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGGTTTAGAGTCCTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
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| CDS-3UTR GCA 90 bp | GACTCTAAACCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTAACCTCAGCCGAAACCATTGCTaGCAGGGTACGAGGAGTAGC | + |
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Preference number: 4 (lower is better) Translates to: DSKPRPSPKSAVSLALNLSRNHC*QGTRSS Trigger: GCTACTCCTCGTACCCTGGCAGCAATGGTTTCGGCT...GAGGTTAAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGGTTTAGAGTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
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| CDS-3UTR GCA 90 bp | GACTCTAAACCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTAACCTCCGTAGCCGAAACCATTaGTGCCAGGGTACGAGGAGT | + |
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Preference number: 4 (lower is better) Translates to: DSKPRPSPKSAVSLALNLRSRNH*CQGTRS Trigger: ACTCCTCGTACCCTGGCAGCAATGGTTTCGGCTACG...GAGGTTAAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGGTTTAGAGTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
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| CDS-3UTR GCA 90 bp | TTTCAGGACTCTAAACCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTCATTCTGGTGGCCTTTaGCGAAAGCTGGTGGGGACG | + |
|
Preference number: 4 (lower is better) Translates to: FQDSKPRPSPKSAVSLALHSGGL*RKLVGT Trigger: CGTCCCCACCAGCTTTCGGCAAAGGCCACCAGAATG...AAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGGTTTAGAGTCCTGAAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
||
| CDS-3UTR CCA 90 bp | CCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTAACCTCACCCCTCCCAGCTGTTTTTCAGCTTaGACGTTTGCCTCGACTCTT | + |
|
Preference number: 4 (lower is better) Translates to: PRPSPKSAVSLALNLTPPSCFSA*TFASTL Trigger: AAGAGTCGAGGCAAACGTCCAAGCTGAAAAACAGCT...GGGAGGGGTGAGGTTAAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
||
| CDS-3UTR CCA 90 bp | TGTGCTTCTCTGCCCTGCTTGCCTGTCTTGGCTCCCTCTACCCGACTCCACGTCGCCTTTGCCGAAAGCTaGTGGGGACGGGCTGTCGTA | + |
|
Preference number: 4 (lower is better) Translates to: CASLPCLPVLAPSTRLHVAFAES*WGRAVV Trigger: TACGACAGCCCGTCCCCACCAGCTTTCGGCAAAGGC...GACGTGGAGTCGGGTAGAGGGAGCCAAGACAGGCAAGCAGGGCAGAGAAGCACA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
||
| CDS-3UTR CCA 90 bp | TTCAGGACTCTAAACCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTATTAGCTTGGAGGACGTaGGGCTCATACTCCGACGCC | + |
|
Preference number: 4 (lower is better) Translates to: FRTLNRAHPPSPPSPWPLLAWRT*GSYSDA Trigger: GGCGTCGGAGTATGAGCCCCACGTCCTCCAAGCTAA...TAAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGGTTTAGAGTCCTGAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
||
| CDS-3UTR CCA 90 bp | TTCAGGACTCTAAACCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTAAGAGGTCTGTGTACGTaGGGTGAGGGTCACAGGGTC | + |
|
Preference number: 4 (lower is better) Translates to: FRTLNRAHPPSPPSPWPLRGLCT*GEGHRV Trigger: GACCCTGTGACCCTCACCCCACGTACACAGACCTCT...TAAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGGTTTAGAGTCCTGAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
||
| CDS-3UTR CCA 90 bp | TTTCAGGACTCTAAACCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTACGAGGCCAGCCCCTTaGCCTTCTGGTCTTTCTTGT | + |
|
Preference number: 4 (lower is better) Translates to: FQDSKPRPSPKSAVSLALTRPAP*PSGLSC Trigger: ACAAGAAAGACCAGAAGGCCAAGGGGCTGGCCTCGT...AAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGGTTTAGAGTCCTGAAA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
||
| CDS-3UTR TCA 90 bp | TTTCAGGACTCTAAACCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTTCATGCAGCTGCCATTaGGCTCCTTGCTCTTGGCAT | + |
|
Preference number: 4 (lower is better) Translates to: FQDSKPRPSPKSAVSLALSCSCH*APCSWH Trigger: ATGCCAAGAGCAAGGAGCTCAATGGCAGCTGCATGA...AAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGGTTTAGAGTCCTGAAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
||
| CDS-3UTR GCA 90 bp | TGTGCTTCTCTGCCCTGCTTGCCTGTCTTGGCTCCCTCTACCCGACTCCACGTCTCCGAAGAGCGCAGCTaGGGTGTTGTCGTAGTAGGT | + |
|
Preference number: 4 (lower is better) Translates to: CASLPCLPVLAPSTRLHVSEERS*GVVVVG Trigger: ACCTACTACGACAACACCGCAGCTGCGCTCTTCGGA...GACGTGGAGTCGGGTAGAGGGAGCCAAGACAGGCAAGCAGGGCAGAGAAGCACA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
||
| CDS-3UTR GCA 90 bp | GACTCTAAACCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTAACCTCTTCAGCTTGGACGTTTaGCTCGACTCTTTCATCCAG | + |
|
Preference number: 4 (lower is better) Translates to: DSKPRPSPKSAVSLALNLFSLDV*LDSFIQ Trigger: CTGGATGAAAGAGTCGAGGCAAACGTCCAAGCTGAA...GAGGTTAAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGGTTTAGAGTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
||
| CDS-3UTR CCA 90 bp | CAGGACTCTAAACCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTAACACAGGTGTGTCAGTTTaGGCGCTTCTTGGATTCTAC | + |
|
Preference number: 4 (lower is better) Translates to: QDSKPRPSPKSAVSLALNTGVSV*ALLGFY Trigger: GTAGAATCCAAGAAGCGCCCAAACTGACACACCTGT...GTTAAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGGTTTAGAGTCCTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
||
| CDS-3UTR CCA 90 bp | GACTCTAAACCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTAACCTCACAGGTGTGTCAGTTTaGGCGCTTCTTGGATTCTAC | + |
|
Preference number: 4 (lower is better) Translates to: DSKPRPSPKSAVSLALNLTGVSV*ALLGFY Trigger: GTAGAATCCAAGAAGCGCCCAAACTGACACACCTGT...GAGGTTAAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGGTTTAGAGTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
||
| CDS-3UTR GCA 90 bp | CTCCAACCTGCTGTGGATTCCTTTCCAAGGGTTGTTGGCAGACAGATGGAACCAGCGTTGCCCAGGGACTaGAGAGAACACGCTGAGCGC | + |
|
Preference number: 4 (lower is better) Translates to: LQPAVDSFPRVVGRQMEPALPRD*REHAER Trigger: GCGCTCAGCGTGTTCTCTGCAGTCCCTGGGCAACGC...TGGTTCCATCTGTCTGCCAACAACCCTTGGAAAGGAATCCACAGCAGGTTGGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
||
| CDS-3UTR GCA 90 bp | TTTCAGGACTCTAAACCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTTTCAGCTTGGACGTTTaGCTCGACTCTTTCATCCAG | + |
|
Preference number: 4 (lower is better) Translates to: FQDSKPRPSPKSAVSLALFSLDV*LDSFIQ Trigger: CTGGATGAAAGAGTCGAGGCAAACGTCCAAGCTGAA...AAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGGTTTAGAGTCCTGAAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
||
| 3UTR CAA 72 bp | AGTGTTGAATGTGCTTCTCTGCCCTGCTTGCCTGTCTaGGCTCCCTCTACCCGACTCCACGTCACCTCTCCA | + |
|
Preference number: 4 (lower is better) Translates to: SVECASLPCLPV*APSTRLHVTSP Trigger: TGGAGAGGTGACGTGGAGTCGGGTAGAGGGAGCCAAGACAGGCAAGCAGGGCAGAGAAGCACATTCAACACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
||
| 3UTR CAA 72 bp | CCCGTCTCCAACCTGCTGTGGATTCCTTTCCAAGGGTaGTTGGCAGACAGATGGAACCAGGCATGGAGGACT | + |
|
Preference number: 4 (lower is better) Translates to: PVSNLLWIPFQG*LADRWNQAWRT Trigger: AGTCCTCCATGCCTGGTTCCATCTGTCTGCCAACAACCCTTGGAAAGGAATCCACAGCAGGTTGGAGACGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
||
| CDS-3UTR GCA 90 bp | CTCCAACCTGCTGTGGATTCCTTTCCAAGGGTTGTTGGCAGACAGATGGAACCACATTCTGGTGGCCTTTaGCGAAAGCTGGTGGGGACG | + |
|
Preference number: 4 (lower is better) Translates to: LQPAVDSFPRVVGRQMEPHSGGL*RKLVGT Trigger: CGTCCCCACCAGCTTTCGGCAAAGGCCACCAGAATG...TGGTTCCATCTGTCTGCCAACAACCCTTGGAAAGGAATCCACAGCAGGTTGGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
||
| CDS-3UTR GCA 90 bp | CCAGCTGCAGCACCTGCCAGGACAGACAGTTTGTTCAAATATACCCTGTTTTCACCACATACACCGGACTaGCCTGCATGGTGGGCGTCC | + |
|
Preference number: 4 (lower is better) Translates to: PAAAPARTDSLFKYTLFSPHTPD*PAWWAS Trigger: GGACGCCCACCATGCAGGGCAGTCCGGTGTATGTGG...TGAAAACAGGGTATATTTGAACAAACTGTCTGTCCTGGCAGGTGCTGCAGCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
||
| CDS-3UTR CCA 90 bp | AACCTGCTGTGGATTCCTTTCCAAGGGTTGTTGGCAGACAGATGGAACCAGGCAACGAGGCCAGCCCCTTaGCCTTCTGGTCTTTCTTGT | + |
|
Preference number: 4 (lower is better) Translates to: NLLWIPFQGLLADRWNQATRPAP*PSGLSC Trigger: ACAAGAAAGACCAGAAGGCCAAGGGGCTGGCCTCGT...TGCCTGGTTCCATCTGTCTGCCAACAACCCTTGGAAAGGAATCCACAGCAGGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
||
| CDS-3UTR CCA 90 bp | GGACAGACAGTTTGTTCAAATATACCCTGTTTTCACGTTAAGTCAAGAGAAGAAGACTGCCCTGCATGGTaGGCGTCCCGTAGGCGCCCC | + |
|
Preference number: 4 (lower is better) Translates to: GQTVCSNIPCFHVKSREEDCPAW*ASRRRP Trigger: GGGGCGCCTACGGGACGCCCACCATGCAGGGCAGTC...TTCTTCTCTTGACTTAACGTGAAAACAGGGTATATTTGAACAAACTGTCTGTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
||
| CDS-3UTR CCA 90 bp | AAGCTTCAGGGAAGTAGGAGAGAAACATACTTTGTGCCCTTCGATTTAAATGTACTTGCTCTTGGCATGTaGGGCGGCGTTGCCCAGGGA | + |
|
Preference number: 4 (lower is better) Translates to: KLQGSRRETYFVPFDLNVLALGM*GGVAQG Trigger: TCCCTGGGCAACGCCGCCCCACATGCCAAGAGCAAG...TACATTTAAATCGAAGGGCACAAAGTATGTTTCTCTCCTACTTCCCTGAAGCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
||
| CDS-3UTR GCA 90 bp | GGACAGACAGTTTGTTCAAATATACCCTGTTTTCACGTTAAGTCAAGAGAAGAACATGTGGGGCGGCGTTaGCCAGGGACTGCAGAGAAC | + |
|
Preference number: 4 (lower is better) Translates to: GQTVCSNIPCFHVKSREEHVGRR*PGTAEN Trigger: GTTCTCTGCAGTCCCTGGGCAACGCCGCCCCACATG...TTCTTCTCTTGACTTAACGTGAAAACAGGGTATATTTGAACAAACTGTCTGTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
||
| CDS-3UTR CCA 90 bp | AAGCTTCAGGGAAGTAGGAGAGAAACATACTTTGTGCCCTTCGATTTAAATGTATTAGCTTGGAGGACGTaGGGCTCATACTCCGACGCC | + |
|
Preference number: 4 (lower is better) Translates to: KLQGSRRETYFVPFDLNVLAWRT*GSYSDA Trigger: GGCGTCGGAGTATGAGCCCCACGTCCTCCAAGCTAA...TACATTTAAATCGAAGGGCACAAAGTATGTTTCTCTCCTACTTCCCTGAAGCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
||
| CDS-3UTR TCA 90 bp | CAGTTTGTTCAAATATACCCTGTTTTCACGTTAAGTCAAGAGAAGAACAGAAGTCTGCAGAGAACACGCTaGGCGCTGGTAGTCACCCTC | + |
|
Preference number: 4 (lower is better) Translates to: QFVQIYPVFTLSQEKNRSLQRTR*ALVVTL Trigger: GAGGGTGACTACCAGCGCTCAGCGTGTTCTCTGCAG...ACTTCTGTTCTTCTCTTGACTTAACGTGAAAACAGGGTATATTTGAACAAACTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
||
| CDS-3UTR CCA 90 bp | CAGTTTGTTCAAATATACCCTGTTTTCACGTTAAGTCAAGAGAAGAACAGAAGTAGAGGTCTGTGTACGTaGGGTGAGGGTCACAGGGTC | + |
|
Preference number: 4 (lower is better) Translates to: QFVQIYPVFTLSQEKNRSRGLCT*GEGHRV Trigger: GACCCTGTGACCCTCACCCCACGTACACAGACCTCT...ACTTCTGTTCTTCTCTTGACTTAACGTGAAAACAGGGTATATTTGAACAAACTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
||
| CDS-3UTR TCA 90 bp | CAGTTTGTTCAAATATACCCTGTTTTCACGTTAAGTCAAGAGAAGAACAGAAGTTCATGCAGCTGCCATTaGGCTCCTTGCTCTTGGCAT | + |
|
Preference number: 4 (lower is better) Translates to: QFVQIYPVFTLSQEKNRSSCSCH*APCSWH Trigger: ATGCCAAGAGCAAGGAGCTCAATGGCAGCTGCATGA...ACTTCTGTTCTTCTCTTGACTTAACGTGAAAACAGGGTATATTTGAACAAACTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
||
| CDS-3UTR CAA 90 bp | CCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTAACCTCACCCCTCCCGCATGTGGGGCGGCGTaGCCCAGGGACTGCAGAGAA | + |
|
Preference number: 5 (lower is better) Translates to: PRPSPKSAVSLALNLTPPACGAA*PRDCRE Trigger: TTCTCTGCAGTCCCTGGGCAACGCCGCCCCACATGC...GGGAGGGGTGAGGTTAAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGG 70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
||
| CDS GCA 90 bp | GCCGCCGCCGCCGCCACCACCGCCGCCGCCACCACCACAACCTTCTaGTGTGCCGGGGGAGCTGTTTTTCAGCTTGGACGTTTGCCTCGA | + |
|
Preference number: 5 (lower is better) Translates to: AAAAATTAAATTTTF*CAGGAVFQLGRLPR Trigger: TCGAGGCAAACGTCCAAGCTGAAAAACAGCTCCCCCGGCACAGCAGAAGGTTGTGGTGGTGGCGGCGGCGGTGGTGGCGGCGGCGGCGGC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
||
| CDS-3UTR CAA 90 bp | CCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTAACCTCACCCCTCCCTTGGTGAGGGTGGAGTaGGAGCCGGCACCGCACTTG | + |
|
Preference number: 5 (lower is better) Translates to: PRPSPKSAVSLALNLTPPLVRVE*EPAPHL Trigger: CAAGTGCGGTGCCGGCTCCAACTCCACCCTCACCAA...GGGAGGGGTGAGGTTAAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
||
| CDS-3UTR CAA 90 bp | CCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTAACCTCACCCCTCCCGACGAGGCCAGCCCCTaGGCCTTCTGGTCTTTCTTG | + |
|
Preference number: 5 (lower is better) Translates to: PRPSPKSAVSLALNLTPPDEASP*AFWSFL Trigger: CAAGAAAGACCAGAAGGCCAAGGGGCTGGCCTCGTC...GGGAGGGGTGAGGTTAAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
||
| CDS TCA 90 bp | CTTGGCATGTGGGGCGGCGTTGCCCAGGGACTGCAGAGAACACGCTaGGCGCTGGTAGTCACCCTCCAGGTGCGTGGCGGCCTGAAAGGG | + |
|
Preference number: 5 (lower is better) Translates to: LGMWGGVAQGLQRTR*ALVVTLQVRGGLKG Trigger: CCCTTTCAGGCCGCCACGCACCTGGAGGGTGACTACCAGCGCTCAGCGTGTTCTCTGCAGTCCCTGGGCAACGCCGCCCCACATGCCAAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
||
| CDS-3UTR CAA 90 bp | CCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTAACCTCACCCCTCCCCAGTTTGGGCGCTTCTaGGATTCTACCCTGAGGCGG | + |
|
Preference number: 5 (lower is better) Translates to: PRPSPKSAVSLALNLTPPQFGRF*DSTLRR Trigger: CCGCCTCAGGGTAGAATCCAAGAAGCGCCCAAACTG...GGGAGGGGTGAGGTTAAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
||
| CDS GCA 90 bp | CGCCGCCGCCACCACCGCCGCCGCCACCACCACAACCTTCTGCTGTaGCGGGGGAGCTGTTTTTCAGCTTGGACGTTTGCCTCGACTCTT | + |
|
Preference number: 5 (lower is better) Translates to: RRRHHRRRHHHNLLL*RGSCFSAWTFASTL Trigger: AAGAGTCGAGGCAAACGTCCAAGCTGAAAAACAGCTCCCCCGGCACAGCAGAAGGTTGTGGTGGTGGCGGCGGCGGTGGTGGCGGCGGCG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
||
| CDS-3UTR CAA 90 bp | GACTCTAAACCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTAACCTCTTGGTGAGGGTGGAGTaGGAGCCGGCACCGCACTTG | + |
|
Preference number: 5 (lower is better) Translates to: DSKPRPSPKSAVSLALNLLVRVE*EPAPHL Trigger: CAAGTGCGGTGCCGGCTCCAACTCCACCCTCACCAA...GAGGTTAAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGGTTTAGAGTC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
||
| CDS-3UTR CAA 90 bp | TTCAGGACTCTAAACCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTAGGCGCCCCCGTTAGCTaGGAGGACGTGGGGCTCATA | + |
|
Preference number: 5 (lower is better) Translates to: FRTLNRAHPPSPPSPWPLGAPVS*EDVGLI Trigger: TATGAGCCCCACGTCCTCCAAGCTAACGGGGGCGCC...TAAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGGTTTAGAGTCCTGAA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
||
| CDS-3UTR CAA 90 bp | GACTCTAAACCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTAACCTCCTGCCATTGAGCTCCTaGCTCTTGGCATGTGGGGCG | + |
|
Preference number: 5 (lower is better) Translates to: DSKPRPSPKSAVSLALNLLPLSS*LLACGA Trigger: CGCCCCACATGCCAAGAGCAAGGAGCTCAATGGCAG...GAGGTTAAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGGTTTAGAGTC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
||
| CDS-3UTR CAA 90 bp | TTCAGGACTCTAAACCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTACTGCCATTGAGCTCCTaGCTCTTGGCATGTGGGGCG | + |
|
Preference number: 5 (lower is better) Translates to: FRTLNRAHPPSPPSPWPLLPLSS*LLACGA Trigger: CGCCCCACATGCCAAGAGCAAGGAGCTCAATGGCAG...TAAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGGTTTAGAGTCCTGAA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
||
| CDS-3UTR CAA 90 bp | GACTCTAAACCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTAACCTCGGCCCACCCCCGTTATaGCTGTTGCTAGTGGTACTG | + |
|
Preference number: 5 (lower is better) Translates to: DSKPRPSPKSAVSLALNLGPPPL*LLLVVL Trigger: CAGTACCACTAGCAACAGCAATAACGGGGGTGGGCC...GAGGTTAAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGGTTTAGAGTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
||
| CDS-3UTR CAA 90 bp | CAGGACTCTAAACCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTAACCTCATGCAGCTGCCATaGAGCTCCTTGCTCTTGGCA | + |
|
Preference number: 5 (lower is better) Translates to: QDSKPRPSPKSAVSLALNLMQLP*SSLLLA Trigger: TGCCAAGAGCAAGGAGCTCAATGGCAGCTGCATGAG...GTTAAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGGTTTAGAGTCCTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
||
| CDS-3UTR CAA 90 bp | TTTCAGGACTCTAAACCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTGGCCCACCCCCGTTATaGCTGTTGCTAGTGGTACTG | + |
|
Preference number: 5 (lower is better) Translates to: FQDSKPRPSPKSAVSLALGPPPL*LLLVVL Trigger: CAGTACCACTAGCAACAGCAATAACGGGGGTGGGCC...AAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGGTTTAGAGTCCTGAAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
||
| CDS-3UTR CAA 90 bp | CAGGACTCTAAACCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTAACCAGGGGAATATCTGTTaGGTGAGGGTGGAGTTGGAG | + |
|
Preference number: 5 (lower is better) Translates to: QDSKPRPSPKSAVSLALNQGNIC*VRVELE Trigger: CTCCAACTCCACCCTCACCAAACAGATATTCCCCTG...GTTAAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGGTTTAGAGTCCTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
||
| CDS-3UTR CAA 90 bp | TTCAGGACTCTAAACCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTACCCCCGTTATTGCTGTaGCTAGTGGTACTGGTAGGT | + |
|
Preference number: 5 (lower is better) Translates to: FRTLNRAHPPSPPSPWPLPPLLL*LVVLVG Trigger: ACCTACCAGTACCACTAGCAACAGCAATAACGGGGG...TAAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGGTTTAGAGTCCTGAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
||
| CDS-3UTR CAA 90 bp | TTTCAGGACTCTAAACCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTGAGCTGTTTTTCAGCTaGGACGTTTGCCTCGACTCT | + |
|
Preference number: 5 (lower is better) Translates to: FQDSKPRPSPKSAVSLALELFFS*DVCLDS Trigger: AGAGTCGAGGCAAACGTCCAAGCTGAAAAACAGCTC...AAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGGTTTAGAGTCCTGAAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
||
| CDS-3UTR CAA 90 bp | TTCAGGACTCTAAACCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTACACAGGTGTGTCAGTTaGGGCGCTTCTTGGATTCTA | + |
|
Preference number: 5 (lower is better) Translates to: FRTLNRAHPPSPPSPWPLHRCVS*GASWIL Trigger: TAGAATCCAAGAAGCGCCCAAACTGACACACCTGTG...TAAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGGTTTAGAGTCCTGAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
||
| CDS-3UTR CAA 90 bp | TTTCAGGACTCTAAACCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTTTTCAGCTTGGACGTTaGCCTCGACTCTTTCATCCA | + |
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Preference number: 5 (lower is better) Translates to: FQDSKPRPSPKSAVSLALFQLGR*PRLFHP Trigger: TGGATGAAAGAGTCGAGGCAAACGTCCAAGCTGAAA...AAGGGCCAGGGAGACGGCGGACTTGGGGGATGGGCGCGGTTTAGAGTCCTGAAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
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| CDS-3UTR CAA 90 bp | CTCTACCCGACTCCACGTCACCTCTCCAATCTGAAATTCCCACTTGGTAGTGCTGACGAGGCCAGCCCCTaGGCCTTCTGGTCTTTCTTG | + |
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Preference number: 5 (lower is better) Translates to: LYPTPRHLSNLKFPLGSADEASP*AFWSFL Trigger: CAAGAAAGACCAGAAGGCCAAGGGGCTGGCCTCGTC...AGCACTACCAAGTGGGAATTTCAGATTGGAGAGGTGACGTGGAGTCGGGTAGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
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| CDS-3UTR CAA 90 bp | CTCTACCCGACTCCACGTCACCTCTCCAATCTGAAATTCCCACTTGGTAGTGCTCAGTTTGGGCGCTTCTaGGATTCTACCCTGAGGCGG | + |
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Preference number: 5 (lower is better) Translates to: LYPTPRHLSNLKFPLGSAQFGRF*DSTLRR Trigger: CCGCCTCAGGGTAGAATCCAAGAAGCGCCCAAACTG...AGCACTACCAAGTGGGAATTTCAGATTGGAGAGGTGACGTGGAGTCGGGTAGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
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| CDS-3UTR CAA 90 bp | CCCAGGCCTGTTCTGTTTCTGGAAACCTGGCGACAACCCCATCCCACACCTCTTCACAGGTGTGTCAGTTaGGGCGCTTCTTGGATTCTA | + |
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Preference number: 5 (lower is better) Translates to: PRPVLFLETWRQPHPTPLHRCVS*GASWIL Trigger: TAGAATCCAAGAAGCGCCCAAACTGACACACCTGTG...AAGAGGTGTGGGATGGGGTTGTCGCCAGGTTTCCAGAAACAGAACAGGCCTGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
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| CDS-3UTR CAA 90 bp | CTCTACCCGACTCCACGTCACCTCTCCAATCTGAAATTCCCACTTGGTAGTGCTCTCATGCAGCTGCCATaGAGCTCCTTGCTCTTGGCA | + |
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Preference number: 5 (lower is better) Translates to: LYPTPRHLSNLKFPLGSALMQLP*SSLLLA Trigger: TGCCAAGAGCAAGGAGCTCAATGGCAGCTGCATGAG...AGCACTACCAAGTGGGAATTTCAGATTGGAGAGGTGACGTGGAGTCGGGTAGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
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| CDS-3UTR CAA 90 bp | CCCAGGCCTGTTCTGTTTCTGGAAACCTGGCGACAACCCCATCCCACACCTCTTTTTCAGCTTGGACGTTaGCCTCGACTCTTTCATCCA | + |
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Preference number: 5 (lower is better) Translates to: PRPVLFLETWRQPHPTPLFQLGR*PRLFHP Trigger: TGGATGAAAGAGTCGAGGCAAACGTCCAAGCTGAAA...AAGAGGTGTGGGATGGGGTTGTCGCCAGGTTTCCAGAAACAGAACAGGCCTGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
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| CDS-3UTR CAA 90 bp | CCAGCTGCAGCACCTGCCAGGACAGACAGTTTGTTCAAATATACCCTGTTTTCACAGGGGAATATCTGTTaGGTGAGGGTGGAGTTGGAG | + |
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Preference number: 5 (lower is better) Translates to: PAAAPARTDSLFKYTLFSQGNIC*VRVELE Trigger: CTCCAACTCCACCCTCACCAAACAGATATTCCCCTG...TGAAAACAGGGTATATTTGAACAAACTGTCTGTCCTGGCAGGTGCTGCAGCTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
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| CDS-3UTR CAA 90 bp | GGACAGACAGTTTGTTCAAATATACCCTGTTTTCACGTTAAGTCAAGAGAAGAAGGCGCCCCCGTTAGCTaGGAGGACGTGGGGCTCATA | + |
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Preference number: 5 (lower is better) Translates to: GQTVCSNIPCFHVKSREEGAPVS*EDVGLI Trigger: TATGAGCCCCACGTCCTCCAAGCTAACGGGGGCGCC...TTCTTCTCTTGACTTAACGTGAAAACAGGGTATATTTGAACAAACTGTCTGTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
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| CDS-3UTR CAA 90 bp | AAGCTTCAGGGAAGTAGGAGAGAAACATACTTTGTGCCCTTCGATTTAAATGTACCCCCGTTATTGCTGTaGCTAGTGGTACTGGTAGGT | + |
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Preference number: 5 (lower is better) Translates to: KLQGSRRETYFVPFDLNVPPLLL*LVVLVG Trigger: ACCTACCAGTACCACTAGCAACAGCAATAACGGGGG...TACATTTAAATCGAAGGGCACAAAGTATGTTTCTCTCCTACTTCCCTGAAGCTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
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| CDS-3UTR CAA 90 bp | CAGTTTGTTCAAATATACCCTGTTTTCACGTTAAGTCAAGAGAAGAACAGAAGTGAGCTGTTTTTCAGCTaGGACGTTTGCCTCGACTCT | + |
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Preference number: 5 (lower is better) Translates to: QFVQIYPVFTLSQEKNRSELFFS*DVCLDS Trigger: AGAGTCGAGGCAAACGTCCAAGCTGAAAAACAGCTC...ACTTCTGTTCTTCTCTTGACTTAACGTGAAAACAGGGTATATTTGAACAAACTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000093944.10 |
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| CDS TCA 72 bp | TGGGGCGGCGTTGCCCAGGGACTGCAGAGAACACGCTaGGCGCTGGTAGTCACCCTCCAGGTGCGTGGCGGC | + |
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Preference number: 6 (lower is better) Translates to: WGGVAQGLQRTR*ALVVTLQVRGG Trigger: GCCGCCACGCACCTGGAGGGTGACTACCAGCGCTCAGCGTGTTCTCTGCAGTCCCTGGGCAACGCCGCCCCA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
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| CDS GCA 72 bp | GGGGCTGGGGAGGCCCGTCGTAGCCGAAACCATTGCTaGCAGGGTACGAGGAGTAGCCTCCGAAGAGCGCAG | + |
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Preference number: 6 (lower is better) Translates to: GAGEARRSRNHC*QGTRSSLRRAQ Trigger: CTGCGCTCTTCGGAGGCTACTCCTCGTACCCTGGCAGCAATGGTTTCGGCTACGACGGGCCTCCCCAGCCCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
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| CDS CAA 72 bp | GGGCCGCTTTTGCTGGGCCCACCCCCGTTATTGCTGTaGCTAGTGGTACTGGTAGGTGCGGCGCTGGGTGGG | + |
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Preference number: 6 (lower is better) Translates to: GPLLLGPPPLLL*LVVLVGAALGG Trigger: CCCACCCAGCGCCGCACCTACCAGTACCACTAGCAACAGCAATAACGGGGGTGGGCCCAGCAAAAGCGGCCC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
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| CDS CAA 72 bp | CCATTGAGCTCCTTGCTCTTGGCATGTGGGGCGGCGTaGCCCAGGGACTGCAGAGAACACGCTGAGCGCTGG | + |
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Preference number: 6 (lower is better) Translates to: PLSSLLLACGAA*PRDCREHAERW Trigger: CCAGCGCTCAGCGTGTTCTCTGCAGTCCCTGGGCAACGCCGCCCCACATGCCAAGAGCAAGGAGCTCAATGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
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| CDS CCA 72 bp | CATGCAGCTGCCATTGAGCTCCTTGCTCTTGGCATGTaGGGCGGCGTTGCCCAGGGACTGCAGAGAACACGC | + |
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Preference number: 6 (lower is better) Translates to: HAAAIELLALGM*GGVAQGLQRTR Trigger: GCGTGTTCTCTGCAGTCCCTGGGCAACGCCGCCCCACATGCCAAGAGCAAGGAGCTCAATGGCAGCTGCATG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055334.3 ENSMUST00000093944.10 |
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