RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HOXB2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000075588

Ensembl transcript IDs: ENSMUST00000100523.7

Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp CCCTGCGCGGCCTCGGCGGGGTGGAAGCAGGCTTCCCGCAGCCGGTaGGTCGCGACGTCGCCCGGGCTGACCGTGGGTTCCTCGGCTGGC +
Preference number: 5 (lower is better)
Translates to: PCAASAGWKQASRSR*VATSPGLTVGSSAG
Trigger: GCCAGCCGAGGAACCCACGGTCAGCCCGGGCGACGTCGCGACTCACCGGCTGCGGGAAGCCTGCTTCCACCCCGCCGAGGCCGCGCAGGG
77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100523.7
CDS CCA 90 bp CCCGGGCTGACCGTGGGTTCCTCGGCTGGCTCTCCCGCGTCGTCCTaGGCGCTCGGCCCGCCTGGTTCTCCCTCGGGCGGCTCTCGATGC +
Preference number: 5 (lower is better)
Translates to: PGLTVGSSAGSPASS*ALGPPGSPSGGSRC
Trigger: GCATCGAGAGCCGCCCGAGGGAGAACCAGGCGGGCCGAGCGCCCAGGACGACGCGGGAGAGCCAGCCGAGGAACCCACGGTCAGCCCGGG
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100523.7
CDS CCA 90 bp CCGGTGAGTCGCGACGTCGCCCGGGCTGACCGTGGGTTCCTCGGCTaGCTCTCCCGCGTCGTCCTGGGCGCTCGGCCCGCCTGGTTCTCC +
Preference number: 5 (lower is better)
Translates to: PVSRDVARADRGFLG*LSRVVLGARPAWFS
Trigger: GGAGAACCAGGCGGGCCGAGCGCCCAGGACGACGCGGGAGAGCCAGCCGAGGAACCCACGGTCAGCCCGGGCGACGTCGCGACTCACCGG
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100523.7
CDS TCA 90 bp GGAAGCAGGCTTCCCGCAGCCGGTGAGTCGCGACGTCGCCCGGGCTaGCCGTGGGTTCCTCGGCTGGCTCTCCCGCGTCGTCCTGGGCGC +
Preference number: 5 (lower is better)
Translates to: GSRLPAAGESRRRPG*PWVPRLALPRRPGR
Trigger: GCGCCCAGGACGACGCGGGAGAGCCAGCCGAGGAACCCACGGTCAGCCCGGGCGACGTCGCGACTCACCGGCTGCGGGAAGCCTGCTTCC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100523.7
CDS CCA 90 bp TTCCTCGGCTGGCTCTCCCGCGTCGTCCTGGGCGCTCGGCCCGCCTaGTTCTCCCTCGGGCGGCTCTCGATGCTGCGTCTGCCGCTTGTG +
Preference number: 5 (lower is better)
Translates to: FLGWLSRVVLGARPA*FSLGRLSMLRLPLV
Trigger: CACAAGCGGCAGACGCAGCATCGAGAGCCGCCCGAGGGAGAACCAGGCGGGCCGAGCGCCCAGGACGACGCGGGAGAGCCAGCCGAGGAA
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100523.7
CDS GCA 90 bp GCAGTTGCGTGTTGGTGTAGGCCGTGCGCAGTCTGCGGGAGCCGCTaGCGCCGCATTCTGGCAATCCGGGGCCATCTGATGGTGATCCGA +
Preference number: 5 (lower is better)
Translates to: AVACWCRPCAVCGSR*RRILAIRGHLMVIR
Trigger: TCGGATCACCATCAGATGGCCCCGGATTGCCAGAATGCGGCGGCAGCGGCTCCCGCAGACTGCGCACGGCCTACACCAACACGCAACTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100523.7
CDS CCA 90 bp CTTCCTCGGAAAAGGGCACGGGGCTATCGAGAGAACCCTGCAGGCTaGGTGAAAGGCCTCCGGACATCTGGAGACAGGAGTCTGCAGCGA +
Preference number: 5 (lower is better)
Translates to: LPRKRARGYRENPAG*VKGLRTSGDRSLQR
Trigger: TCGCTGCAGACTCCTGTCTCCAGATGTCCGGAGGCCTTTCACCCAGCCTGCAGGGTTCTCTCGATAGCCCCGTGCCCTTTTCCGAGGAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100523.7
CDS TCA 90 bp CTCGGAAAAGGGCACGGGGCTATCGAGAGAACCCTGCAGGCTGGGTaGAAGGCCTCCGGACATCTGGAGACAGGAGTCTGCAGCGAAGAA +
Preference number: 5 (lower is better)
Translates to: LGKGHGAIERTLQAG*KASGHLETGVCSEE
Trigger: TTCTTCGCTGCAGACTCCTGTCTCCAGATGTCCGGAGGCCTTTCACCCAGCCTGCAGGGTTCTCTCGATAGCCCCGTGCCCTTTTCCGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100523.7
CDS GCA 90 bp TCCAGCTCTTCCTCGGAAAAGGGCACGGGGCTATCGAGAGAACCCTaGAGGCTGGGTGAAAGGCCTCCGGACATCTGGAGACAGGAGTCT +
Preference number: 5 (lower is better)
Translates to: SSSSSEKGTGLSREP*RLGERPPDIWRQES
Trigger: AGACTCCTGTCTCCAGATGTCCGGAGGCCTTTCACCCAGCCTGCAGGGTTCTCTCGATAGCCCCGTGCCCTTTTCCGAGGAAGAGCTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100523.7
CDS TCA 90 bp AAAGGCCTCCGGACATCTGGAGACAGGAGTCTGCAGCGAAGAAATTaGGGTCCGGTAGAAAAGGCGAATCCTGCCGCTCGGGGCAGGCGT +
Preference number: 5 (lower is better)
Translates to: KGLRTSGDRSLQRRN*GPVEKANPAARGRR
Trigger: ACGCCTGCCCCGAGCGGCAGGATTCGCCTTTTCTACCGGACCTCAATTTCTTCGCTGCAGACTCCTGTCTCCAGATGTCCGGAGGCCTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100523.7
CDS CCA 90 bp CTATCGAGAGAACCCTGCAGGCTGGGTGAAAGGCCTCCGGACATCTaGAGACAGGAGTCTGCAGCGAAGAAATTGAGGTCCGGTAGAAAA +
Preference number: 5 (lower is better)
Translates to: LSREPCRLGERPPDI*RQESAAKKLRSGRK
Trigger: TTTTCTACCGGACCTCAATTTCTTCGCTGCAGACTCCTGTCTCCAGATGTCCGGAGGCCTTTCACCCAGCCTGCAGGGTTCTCTCGATAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100523.7
CDS CCA 90 bp TGTCTCCAAGACAGCGGGGAAGGAAGTCAGACACTCGGCGAGCGATaGCTGGCTGTTTATAAACCCAATCTCCCTCTCAAATTCAAAATT +
Preference number: 5 (lower is better)
Translates to: CLQDSGEGSQTLGER*LAVYKPNLPLKFKI
Trigger: AATTTTGAATTTGAGAGGGAGATTGGGTTTATAAACAGCCAGCCATCGCTCGCCGAGTGTCTGACTTCCTTCCCCGCTGTCTTGGAGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100523.7
CDS CCA 72 bp CGCGACGTCGCCCGGGCTGACCGTGGGTTCCTCGGCTaGCTCTCCCGCGTCGTCCTGGGCGCTCGGCCCGCC +
Preference number: 6 (lower is better)
Translates to: RDVARADRGFLG*LSRVVLGARPA
Trigger: GGCGGGCCGAGCGCCCAGGACGACGCGGGAGAGCCAGCCGAGGAACCCACGGTCAGCCCGGGCGACGTCGCG
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100523.7
CDS TCA 72 bp GCCTCGGCGGGGTGGAAGCAGGCTTCCCGCAGCCGGTaGGTCGCGACGTCGCCCGGGCTGACCGTGGGTTCC +
Preference number: 6 (lower is better)
Translates to: ASAGWKQASRSR*VATSPGLTVGS
Trigger: GGAACCCACGGTCAGCCCGGGCGACGTCGCGACTCACCGGCTGCGGGAAGCCTGCTTCCACCCCGCCGAGGC
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100523.7
CDS TCA 72 bp CTTCCCGCAGCCGGTGAGTCGCGACGTCGCCCGGGCTaGCCGTGGGTTCCTCGGCTGGCTCTCCCGCGTCGT +
Preference number: 6 (lower is better)
Translates to: LPAAGESRRRPG*PWVPRLALPRR
Trigger: ACGACGCGGGAGAGCCAGCCGAGGAACCCACGGTCAGCCCGGGCGACGTCGCGACTCACCGGCTGCGGGAAG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100523.7
CDS CCA 72 bp TGGCTCTCCCGCGTCGTCCTGGGCGCTCGGCCCGCCTaGTTCTCCCTCGGGCGGCTCTCGATGCTGCGTCTG +
Preference number: 6 (lower is better)
Translates to: WLSRVVLGARPA*FSLGRLSMLRL
Trigger: CAGACGCAGCATCGAGAGCCGCCCGAGGGAGAACCAGGCGGGCCGAGCGCCCAGGACGACGCGGGAGAGCCA
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100523.7
CDS TCA 72 bp CTTCGGGTAGGGGCTCGCTCTGCCGGCCTCCGGCTCTaGGCATTGTGCAGCCGGGGCTCGATGCGCCCACAC +
Preference number: 6 (lower is better)
Translates to: LRVGARSAGLRL*ALCSRGSMRPH
Trigger: GTGTGGGCGCATCGAGCCCCGGCTGCACAATGCTCAGAGCCGGAGGCCGGCAGAGCGAGCCCCTACCCGAAG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100523.7
CDS GCA 72 bp GCCTCCGGCTCTGAGCATTGTGCAGCCGGGGCTCGATaGGCCCACACTCTCCAGGGTGGTGGCAGGCAGCGC +
Preference number: 6 (lower is better)
Translates to: ASGSEHCAAGAR*AHTLQGGGRQR
Trigger: GCGCTGCCTGCCACCACCCTGGAGAGTGTGGGCGCATCGAGCCCCGGCTGCACAATGCTCAGAGCCGGAGGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100523.7
CDS GCA 72 bp CCAGCAGTTGCGTGTTGGTGTAGGCCGTGCGCAGTCTaGGGGAGCCGCTGCCGCCGCATTCTGGCAATCCGG +
Preference number: 6 (lower is better)
Translates to: PAVACWCRPCAV*GSRCRRILAIR
Trigger: CCGGATTGCCAGAATGCGGCGGCAGCGGCTCCCGCAGACTGCGCACGGCCTACACCAACACGCAACTGCTGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100523.7
CDS CCA 72 bp CAGAGCAGGCCCATCTCCGGCTTGCTTTTGGCTCCCTaGTCTCTGAAGGGTGGAGGCGCCGAGCTGGAGGCT +
Preference number: 6 (lower is better)
Translates to: QSRPISGLLLAP*SLKGGGAELEA
Trigger: AGCCTCCAGCTCGGCGCCTCCACCCTTCAGAGACCAGGGAGCCAAAAGCAAGCCGGAGATGGGCCTGCTCTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100523.7
CDS GCA 72 bp TCCTCGGAAAAGGGCACGGGGCTATCGAGAGAACCCTaGAGGCTGGGTGAAAGGCCTCCGGACATCTGGAGA +
Preference number: 6 (lower is better)
Translates to: SSEKGTGLSREP*RLGERPPDIWR
Trigger: TCTCCAGATGTCCGGAGGCCTTTCACCCAGCCTGCAGGGTTCTCTCGATAGCCCCGTGCCCTTTTCCGAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100523.7
CDS CAA 90 bp GAAAGGCCTCCGGACATCTGGAGACAGGAGTCTGCAGCGAAGAAATaGAGGTCCGGTAGAAAAGGCGAATCCTGCCGCTCGGGGCAGGCG +
Preference number: 6 (lower is better)
Translates to: ERPPDIWRQESAAKK*RSGRKGESCRSGQA
Trigger: CGCCTGCCCCGAGCGGCAGGATTCGCCTTTTCTACCGGACCTCAATTTCTTCGCTGCAGACTCCTGTCTCCAGATGTCCGGAGGCCTTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100523.7
CDS CCA 72 bp AAAAGGGCACGGGGCTATCGAGAGAACCCTGCAGGCTaGGTGAAAGGCCTCCGGACATCTGGAGACAGGAGT +
Preference number: 6 (lower is better)
Translates to: KRARGYRENPAG*VKGLRTSGDRS
Trigger: ACTCCTGTCTCCAGATGTCCGGAGGCCTTTCACCCAGCCTGCAGGGTTCTCTCGATAGCCCCGTGCCCTTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100523.7
CDS CCA 72 bp GAACCCTGCAGGCTGGGTGAAAGGCCTCCGGACATCTaGAGACAGGAGTCTGCAGCGAAGAAATTGAGGTCC +
Preference number: 6 (lower is better)
Translates to: EPCRLGERPPDI*RQESAAKKLRS
Trigger: GGACCTCAATTTCTTCGCTGCAGACTCCTGTCTCCAGATGTCCGGAGGCCTTTCACCCAGCCTGCAGGGTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100523.7
CDS TCA 72 bp AGGGAAACTGCAAGTCGATGGCACAGAGCGTGCTGGTaGAGAAGTCCAGCTCTTCCTCGGAAAAGGGCACGG +
Preference number: 6 (lower is better)
Translates to: RETASRWHRACW*RSPALPRKRAR
Trigger: CCGTGCCCTTTTCCGAGGAAGAGCTGGACTTCTTCACCAGCACGCTCTGTGCCATCGACTTGCAGTTTCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100523.7
CDS CAA 72 bp CCGGACATCTGGAGACAGGAGTCTGCAGCGAAGAAATaGAGGTCCGGTAGAAAAGGCGAATCCTGCCGCTCG +
Preference number: 6 (lower is better)
Translates to: PDIWRQESAAKK*RSGRKGESCRS
Trigger: CGAGCGGCAGGATTCGCCTTTTCTACCGGACCTCAATTTCTTCGCTGCAGACTCCTGTCTCCAGATGTCCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100523.7
CDS CCA 72 bp GACAGCGGGGAAGGAAGTCAGACACTCGGCGAGCGATaGCTGGCTGTTTATAAACCCAATCTCCCTCTCAAA +
Preference number: 6 (lower is better)
Translates to: DSGEGSQTLGER*LAVYKPNLPLK
Trigger: TTTGAGAGGGAGATTGGGTTTATAAACAGCCAGCCATCGCTCGCCGAGTGTCTGACTTCCTTCCCCGCTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100523.7