Pregenerated sensors for HOXB13 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000049604Ensembl transcript IDs: ENSMUST00000062709.4
Found 99 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CATCTCTTGGGGTCCCTCAGCCGAGTCCTCTGCCAGTCCTGGCCCTaGCAGGCTCCCAGTTCTCCAGGACAAGCCCTCTTCCCCTGCCCA | + |
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Preference number: 1 (lower is better) Translates to: HLLGSLSRVLCQSWP*QAPSSPGQALFPCP Trigger: TGGGCAGGGGAAGAGGGCTTGTCCTGGAGAACTGGGAGCCTGCCAGGGCCAGGACTGGCAGAGGACTCGGCTGAGGGACCCCAAGAGATG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| 3UTR CCA 90 bp | AGGTGTCATCTCTTGGGGTCCCTCAGCCGAGTCCTCTGCCAGTCCTaGCCCTGGCAGGCTCCCAGTTCTCCAGGACAAGCCCTCTTCCCC | + |
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Preference number: 1 (lower is better) Translates to: RCHLLGSLSRVLCQS*PWQAPSSPGQALFP Trigger: GGGGAAGAGGGCTTGTCCTGGAGAACTGGGAGCCTGCCAGGGCCAGGACTGGCAGAGGACTCGGCTGAGGGACCCCAAGAGATGACACCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| 3UTR CCA 90 bp | GAGGAACAGTCCAGAACTCAGAAGCCTGCTAAAGGTGTCATCTCTTaGGGTCCCTCAGCCGAGTCCTCTGCCAGTCCTGGCCCTGGCAGG | + |
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Preference number: 1 (lower is better) Translates to: EEQSRTQKPAKGVIS*GPSAESSASPGPGR Trigger: CCTGCCAGGGCCAGGACTGGCAGAGGACTCGGCTGAGGGACCCCAAGAGATGACACCTTTAGCAGGCTTCTGAGTTCTGGACTGTTCCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| 3UTR GCA 90 bp | AGGTTCTTCAGAACCGTGATGGAGGAGCCTCCCGCTCCCGGCACATaGAGGATAGCCCCGAGGAACAGTCCAGAACTCAGAAGCCTGCTA | + |
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Preference number: 1 (lower is better) Translates to: RFFRTVMEEPPAPGT*RIAPRNSPELRSLL Trigger: TAGCAGGCTTCTGAGTTCTGGACTGTTCCTCGGGGCTATCCTGCATGTGCCGGGAGCGGGAGGCTCCTCCATCACGGTTCTGAAGAACCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| 3UTR GCA 90 bp | AGGTGGGCAGGGAGGAGGGAGAAGCACTCTCTAACTGGTCTATCCTaGCCTGGTATCATCTCAGAAAAATGCCAAGTGGGTATGGGCACC | + |
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Preference number: 1 (lower is better) Translates to: RWAGRREKHSLTGLS*PGIISEKCQVGMGT Trigger: GGTGCCCATACCCACTTGGCATTTTTCTGAGATGATACCAGGGCAGGATAGACCAGTTAGAGAGTGCTTCTCCCTCCTCCCTGCCCACCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| 3UTR CCA 90 bp | GGCAGGGAGGAGGGAGAAGCACTCTCTAACTGGTCTATCCTGCCCTaGTATCATCTCAGAAAAATGCCAAGTGGGTATGGGCACCTTAGA | + |
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Preference number: 1 (lower is better) Translates to: GREEGEALSNWSILP*YHLRKMPSGYGHLR Trigger: TCTAAGGTGCCCATACCCACTTGGCATTTTTCTGAGATGATACCAGGGCAGGATAGACCAGTTAGAGAGTGCTTCTCCCTCCTCCCTGCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| 3UTR TCA 90 bp | ACTGGTTATGAGATTATCACCACGGTCCAGATGAATGATTATGACTaGTACAGGTTCTTCAGAACCGTGATGGAGGAGCCTCCCGCTCCC | + |
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Preference number: 1 (lower is better) Translates to: TGYEIITTVQMNDYD*YRFFRTVMEEPPAP Trigger: GGGAGCGGGAGGCTCCTCCATCACGGTTCTGAAGAACCTGTATCAGTCATAATCATTCATCTGGACCGTGGTGATAATCTCATAACCAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| 3UTR CCA 90 bp | TCAGGGCACTGGTTTCACTTCACTATAATATCTCAGCATTTGGGATaGGGGCTTCCCATTGTGTATAGCCTAGGAGGTTGTCCAGGAGGA | + |
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Preference number: 1 (lower is better) Translates to: SGHWFHFTIISQHLG*GLPIVYSLGGCPGG Trigger: TCCTCCTGGACAACCTCCTAGGCTATACACAATGGGAAGCCCCCATCCCAAATGCTGAGATATTATAGTGAAGTGAAACCAGTGCCCTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| 3UTR CCA 90 bp | TCCTTGGTATTCACTTCCTGGTGGGTTCTGACCCAATCAGGGCACTaGTTTCACTTCACTATAATATCTCAGCATTTGGGATGGGGGCTT | + |
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Preference number: 1 (lower is better) Translates to: SLVFTSWWVLTQSGH*FHFTIISQHLGWGL Trigger: AAGCCCCCATCCCAAATGCTGAGATATTATAGTGAAGTGAAACCAGTGCCCTGATTGGGTCAGAACCCACCAGGAAGTGAATACCAAGGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| 3UTR CCA 90 bp | AACTGTCTTGCCAAGTCTGTAAGTCCTTCCTTGGTATTCACTTCCTaGTGGGTTCTGACCCAATCAGGGCACTGGTTTCACTTCACTATA | + |
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Preference number: 1 (lower is better) Translates to: NCLAKSVSPSLVFTS*WVLTQSGHWFHFTI Trigger: TATAGTGAAGTGAAACCAGTGCCCTGATTGGGTCAGAACCCACCAGGAAGTGAATACCAAGGAAGGACTTACAGACTTGGCAAGACAGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| 3UTR-3UTR CCA 90 bp | CAAAAGCCCAAGGATAGGGTGCCCTCTTCTGTAACCACTGGGCCTGGAAGGAGTTGCCAGTCCTGGCCCTaGCAGGCTCCCAGTTCTCCA | + |
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Preference number: 2 (lower is better) Translates to: QKPKDRVPSSVTTGPGRSCQSWP*QAPSSP Trigger: TGGAGAACTGGGAGCCTGCCAGGGCCAGGACTGGCA...ACTCCTTCCAGGCCCAGTGGTTACAGAAGAGGGCACCCTATCCTTGGGCTTTTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| 3UTR-3UTR CCA 90 bp | CAAAAGCCCAAGGATAGGGTGCCCTCTTCTGTAACCACTGGGCCTGGAAGGAGTAAAGGTGTCATCTCTTaGGGTCCCTCAGCCGAGTCC | + |
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Preference number: 2 (lower is better) Translates to: QKPKDRVPSSVTTGPGRSKGVIS*GPSAES Trigger: GGACTCGGCTGAGGGACCCCAAGAGATGACACCTTT...ACTCCTTCCAGGCCCAGTGGTTACAGAAGAGGGCACCCTATCCTTGGGCTTTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| 3UTR-3UTR CCA 90 bp | GGCCACTTTGGCTTTGGGTGCCAGGAACCCCTCCAGGCTAATCCTGGGTCTCTTTCTCAGCATTTGGGATaGGGGCTTCCCATTGTGTAT | + |
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Preference number: 2 (lower is better) Translates to: GHFGFGCQEPLQANPGSLSQHLG*GLPIVY Trigger: ATACACAATGGGAAGCCCCCATCCCAAATGCTGAGA...AAGAGACCCAGGATTAGCCTGGAGGGGTTCCTGGCACCCAAAGCCAAAGTGGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| 3UTR-3UTR CCA 90 bp | CATCTCAGAAAAATGCCAAGTGGGTATGGGCACCTTAGAAGGATGAATCTACCTGTCCTCTGCCAGTCCTaGCCCTGGCAGGCTCCCAGT | + |
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Preference number: 2 (lower is better) Translates to: HLRKMPSGYGHLRRMNLPVLCQS*PWQAPS Trigger: ACTGGGAGCCTGCCAGGGCCAGGACTGGCAGAGGAC...AGGTAGATTCATCCTTCTAAGGTGCCCATACCCACTTGGCATTTTTCTGAGATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| 3UTR-3UTR GCA 90 bp | GAAAGGAATCTGAGAGGAAACTGTCCTACAAGATCGTCTTCCGAATTTATTCACCTCAGCCGAGTCCTCTaGCAGTCCTGGCCCTGGCAG | + |
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Preference number: 2 (lower is better) Translates to: ERNLRGNCPTRSSSEFIHLSRVL*QSWPWQ Trigger: CTGCCAGGGCCAGGACTGGCAGAGGACTCGGCTGAG...GTGAATAAATTCGGAAGACGATCTTGTAGGACAGTTTCCTCTCAGATTCCTTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| 3UTR-3UTR CCA 90 bp | GGCCACTTTGGCTTTGGGTGCCAGGAACCCCTCCAGGCTAATCCTGGGTCTCTTACCCAATCAGGGCACTaGTTTCACTTCACTATAATA | + |
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Preference number: 2 (lower is better) Translates to: GHFGFGCQEPLQANPGSLTQSGH*FHFTII Trigger: TATTATAGTGAAGTGAAACCAGTGCCCTGATTGGGT...AAGAGACCCAGGATTAGCCTGGAGGGGTTCCTGGCACCCAAAGCCAAAGTGGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| 3UTR-3UTR GCA 90 bp | CAAAAGCCCAAGGATAGGGTGCCCTCTTCTGTAACCACTGGGCCTGGAAGGAGTCAGAGTTTAAGAAAGTaGCCAAGTAACTGTCTTGCC | + |
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Preference number: 2 (lower is better) Translates to: QKPKDRVPSSVTTGPGRSQSLRK*PSNCLA Trigger: GGCAAGACAGTTACTTGGGCACTTTCTTAAACTCTG...ACTCCTTCCAGGCCCAGTGGTTACAGAAGAGGGCACCCTATCCTTGGGCTTTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| 3UTR-3UTR GCA 90 bp | TGGCATCCTCTTCTCCCAGGCCTCGAGGAGAGAGGTTCCTTCAGTGTTAAAGAACACGTGGCTCCTAAATaGCCAACAAACCCTAATCCA | + |
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Preference number: 2 (lower is better) Translates to: WHPLLPGLEERGSFSVKEHVAPK*PTNPNP Trigger: TGGATTAGGGTTTGTTGGGCATTTAGGAGCCACGTG...TTCTTTAACACTGAAGGAACCTCTCTCCTCGAGGCCTGGGAGAAGAGGATGCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| 3UTR-3UTR TCA 90 bp | ATTTGCCAAGAGAAGCAGAGTTTAAGAAAGTGCCCAAGTAACTGTCTTGCCAAGCTTCCTGGTGGGTTCTaGCCCAATCAGGGCACTGGT | + |
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Preference number: 2 (lower is better) Translates to: ICQEKQSLRKCPSNCLAKLPGGF*PNQGTG Trigger: ACCAGTGCCCTGATTGGGTCAGAACCCACCAGGAAG...CTTGGCAAGACAGTTACTTGGGCACTTTCTTAAACTCTGCTTCTCTTGGCAAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| 3UTR-3UTR TCA 90 bp | GTCTATCCTGCCCTGGTATCATCTCAGAAAAATGCCAAGTGGGTATGGGCACCTTCACCACGGTCCAGATaGATGATTATGACTGATACA | + |
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Preference number: 2 (lower is better) Translates to: VYPALVSSQKNAKWVWAPSPRSR*MIMTDT Trigger: TGTATCAGTCATAATCATTCATCTGGACCGTGGTGA...AGGTGCCCATACCCACTTGGCATTTTTCTGAGATGATACCAGGGCAGGATAGAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| 3UTR-3UTR TCA 90 bp | CCAAGTAACTGTCTTGCCAAGTCTGTAAGTCCTTCCTTGGTATTCACTTCCTGGACATGGAAAGGAATCTaGGAGGAAACTGTCCTACAA | + |
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Preference number: 2 (lower is better) Translates to: PSNCLAKSVSPSLVFTSWTWKGI*EETVLQ Trigger: TTGTAGGACAGTTTCCTCTCAGATTCCTTTCCATGT...CCAGGAAGTGAATACCAAGGAAGGACTTACAGACTTGGCAAGACAGTTACTTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| 3UTR-3UTR TCA 90 bp | GAAAGGAATCTGAGAGGAAACTGTCCTACAAGATCGTCTTCCGAATTTATTCACAATCAGCTCAACTCATaGAAGCGATTTCTAAGTGCT | + |
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Preference number: 2 (lower is better) Translates to: ERNLRGNCPTRSSSEFIHNQLNS*KRFLSA Trigger: AGCACTTAGAAATCGCTTTCATGAGTTGAGCTGATT...GTGAATAAATTCGGAAGACGATCTTGTAGGACAGTTTCCTCTCAGATTCCTTTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| 3UTR-3UTR TCA 90 bp | GAAAGGAATCTGAGAGGAAACTGTCCTACAAGATCGTCTTCCGAATTTATTCACATGAATGATTATGACTaGTACAGGTTCTTCAGAACC | + |
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Preference number: 2 (lower is better) Translates to: ERNLRGNCPTRSSSEFIHMNDYD*YRFFRT Trigger: GGTTCTGAAGAACCTGTATCAGTCATAATCATTCAT...GTGAATAAATTCGGAAGACGATCTTGTAGGACAGTTTCCTCTCAGATTCCTTTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| 3UTR CCA 72 bp | GGGTCCCTCAGCCGAGTCCTCTGCCAGTCCTGGCCCTaGCAGGCTCCCAGTTCTCCAGGACAAGCCCTCTTC | + |
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Preference number: 3 (lower is better) Translates to: GSLSRVLCQSWP*QAPSSPGQALF Trigger: GAAGAGGGCTTGTCCTGGAGAACTGGGAGCCTGCCAGGGCCAGGACTGGCAGAGGACTCGGCTGAGGGACCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| 3UTR CCA 72 bp | CTCTTGGGGTCCCTCAGCCGAGTCCTCTGCCAGTCCTaGCCCTGGCAGGCTCCCAGTTCTCCAGGACAAGCC | + |
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Preference number: 3 (lower is better) Translates to: LLGSLSRVLCQS*PWQAPSSPGQA Trigger: GGCTTGTCCTGGAGAACTGGGAGCCTGCCAGGGCCAGGACTGGCAGAGGACTCGGCTGAGGGACCCCAAGAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| 3UTR GCA 72 bp | AGAACCGTGATGGAGGAGCCTCCCGCTCCCGGCACATaGAGGATAGCCCCGAGGAACAGTCCAGAACTCAGA | + |
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Preference number: 3 (lower is better) Translates to: RTVMEEPPAPGT*RIAPRNSPELR Trigger: TCTGAGTTCTGGACTGTTCCTCGGGGCTATCCTGCATGTGCCGGGAGCGGGAGGCTCCTCCATCACGGTTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| 3UTR GCA 72 bp | GGGAGGAGGGAGAAGCACTCTCTAACTGGTCTATCCTaGCCTGGTATCATCTCAGAAAAATGCCAAGTGGGT | + |
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Preference number: 3 (lower is better) Translates to: GRREKHSLTGLS*PGIISEKCQVG Trigger: ACCCACTTGGCATTTTTCTGAGATGATACCAGGGCAGGATAGACCAGTTAGAGAGTGCTTCTCCCTCCTCCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| 3UTR CCA 72 bp | GCCAAGTCTGTAAGTCCTTCCTTGGTATTCACTTCCTaGTGGGTTCTGACCCAATCAGGGCACTGGTTTCAC | + |
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Preference number: 3 (lower is better) Translates to: AKSVSPSLVFTS*WVLTQSGHWFH Trigger: GTGAAACCAGTGCCCTGATTGGGTCAGAACCCACCAGGAAGTGAATACCAAGGAAGGACTTACAGACTTGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| 3UTR CCA 72 bp | GAGGGAGAAGCACTCTCTAACTGGTCTATCCTGCCCTaGTATCATCTCAGAAAAATGCCAAGTGGGTATGGG | + |
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Preference number: 3 (lower is better) Translates to: EGEALSNWSILP*YHLRKMPSGYG Trigger: CCCATACCCACTTGGCATTTTTCTGAGATGATACCAGGGCAGGATAGACCAGTTAGAGAGTGCTTCTCCCTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| 3UTR CCA 72 bp | AAGTCTGTAAGTCCTTCCTTGGTATTCACTTCCTGGTaGGTTCTGACCCAATCAGGGCACTGGTTTCACTTC | + |
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Preference number: 3 (lower is better) Translates to: KSVSPSLVFTSW*VLTQSGHWFHF Trigger: GAAGTGAAACCAGTGCCCTGATTGGGTCAGAACCCACCAGGAAGTGAATACCAAGGAAGGACTTACAGACTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| 3UTR TCA 72 bp | GAGATTATCACCACGGTCCAGATGAATGATTATGACTaGTACAGGTTCTTCAGAACCGTGATGGAGGAGCCT | + |
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Preference number: 3 (lower is better) Translates to: EIITTVQMNDYD*YRFFRTVMEEP Trigger: AGGCTCCTCCATCACGGTTCTGAAGAACCTGTATCAGTCATAATCATTCATCTGGACCGTGGTGATAATCTC 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| 3UTR CCA 72 bp | TTCACTTCCTGGTGGGTTCTGACCCAATCAGGGCACTaGTTTCACTTCACTATAATATCTCAGCATTTGGGA | + |
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Preference number: 3 (lower is better) Translates to: FTSWWVLTQSGH*FHFTIISQHLG Trigger: TCCCAAATGCTGAGATATTATAGTGAAGTGAAACCAGTGCCCTGATTGGGTCAGAACCCACCAGGAAGTGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| 3UTR CCA 72 bp | TGGTTTCACTTCACTATAATATCTCAGCATTTGGGATaGGGGCTTCCCATTGTGTATAGCCTAGGAGGTTGT | + |
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Preference number: 3 (lower is better) Translates to: WFHFTIISQHLG*GLPIVYSLGGC Trigger: ACAACCTCCTAGGCTATACACAATGGGAAGCCCCCATCCCAAATGCTGAGATATTATAGTGAAGTGAAACCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| 3UTR GCA 72 bp | TCGATCATTTGCCAAGAGAAGCAGAGTTTAAGAAAGTaGCCAAGTAACTGTCTTGCCAAGTCTGTAAGTCCT | + |
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Preference number: 3 (lower is better) Translates to: SIICQEKQSLRK*PSNCLAKSVSP Trigger: AGGACTTACAGACTTGGCAAGACAGTTACTTGGGCACTTTCTTAAACTCTGCTTCTCTTGGCAAATGATCGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| 3UTR TCA 72 bp | TCGTCTTCCGAATTTATTCACAATCAGCTCAACTCATaGAAGCGATTTCTAAGTGCTCAACAGAGCTCTAGA | + |
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Preference number: 3 (lower is better) Translates to: SSSEFIHNQLNS*KRFLSAQQSSR Trigger: TCTAGAGCTCTGTTGAGCACTTAGAAATCGCTTTCATGAGTTGAGCTGATTGTGAATAAATTCGGAAGACGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| CDS-3UTR CCA 90 bp | AGGGTGCCCTCTTCTGTAACCACTGGGCCTGGAAGGAGTCCTGACAAGGCCACAGCCAGGGCGGCCGTCTaGGCACAGGGTTTCAGGGAG | + |
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Preference number: 4 (lower is better) Translates to: RVPSSVTTGPGRSPDKATARAAV*AQGFRE Trigger: CTCCCTGAAACCCTGTGCCCAGACGGCCGCCCTGGC...TGTGGCCTTGTCAGGACTCCTTCCAGGCCCAGTGGTTACAGAAGAGGGCACCCT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| CDS-3UTR GCA 90 bp | AGGGTGCCCTCTTCTGTAACCACTGGGCCTGGAAGGAGTCCTGACAAGGCCACACACAGGAGCTGGAGATaGCCCCTGAGGCACCCCAGG | + |
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Preference number: 4 (lower is better) Translates to: RVPSSVTTGPGRSPDKATHRSWR*PLRHPR Trigger: CCTGGGGTGCCTCAGGGGGCATCTCCAGCTCCTGTG...TGTGGCCTTGTCAGGACTCCTTCCAGGCCCAGTGGTTACAGAAGAGGGCACCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| CDS-3UTR CCA 90 bp | GGCCACTTTGGCTTTGGGTGCCAGGAACCCCTCCAGGCTAATCCTGGGTCTCTTGGCGTTCAGAGAGGCTaGTGGCTGCCGAGATCTTGC | + |
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Preference number: 4 (lower is better) Translates to: GHFGFGCQEPLQANPGSLGVQRG*WLPRSC Trigger: GCAAGATCTCGGCAGCCACCAGCCTCTCTGAACGCC...AAGAGACCCAGGATTAGCCTGGAGGGGTTCCTGGCACCCAAAGCCAAAGTGGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| CDS-3UTR GCA 90 bp | AGGGTGCCCTCTTCTGTAACCACTGGGCCTGGAAGGAGTCCTGACAAGGCCACACTGCTTTGGTGGCTCTaGAGAGCCTGGCAGATCCAG | + |
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Preference number: 4 (lower is better) Translates to: RVPSSVTTGPGRSPDKATLLWWL*RAWQIQ Trigger: CTGGATCTGCCAGGCTCTGCAGAGCCACCAAAGCAG...TGTGGCCTTGTCAGGACTCCTTCCAGGCCCAGTGGTTACAGAAGAGGGCACCCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| CDS-3UTR GCA 90 bp | CAAAAGCCCAAGGATAGGGTGCCCTCTTCTGTAACCACTGGGCCTGGAAGGAGTGGGGCTCCCAGGGTCTaGACCACAGACACATCCAGG | + |
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Preference number: 4 (lower is better) Translates to: QKPKDRVPSSVTTGPGRSGAPRV*TTDTSR Trigger: CCTGGATGTGTCTGTGGTGCAGACCCTGGGAGCCCC...ACTCCTTCCAGGCCCAGTGGTTACAGAAGAGGGCACCCTATCCTTGGGCTTTTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| CDS-3UTR CCA 90 bp | GGCCACTTTGGCTTTGGGTGCCAGGAACCCCTCCAGGCTAATCCTGGGTCTCTTATAAGGCACAGGAGCTaGAGATGCCCCCTGAGGCAC | + |
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Preference number: 4 (lower is better) Translates to: GHFGFGCQEPLQANPGSLIRHRS*RCPLRH Trigger: GTGCCTCAGGGGGCATCTCCAGCTCCTGTGCCTTAT...AAGAGACCCAGGATTAGCCTGGAGGGGTTCCTGGCACCCAAAGCCAAAGTGGCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| CDS-3UTR CCA 90 bp | TGGCATCCTCTTCTCCCAGGCCTCGAGGAGAGAGGTTCCTTCAGTGTTAAAGAAGTTGGAGCCGCGGGATaGCTAGCCAGTGGGGAGGAG | + |
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Preference number: 4 (lower is better) Translates to: WHPLLPGLEERGSFSVKEVGAAG*LASGEE Trigger: CTCCTCCCCACTGGCTAGCCATCCCGCGGCTCCAAC...TTCTTTAACACTGAAGGAACCTCTCTCCTCGAGGCCTGGGAGAAGAGGATGCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| CDS-3UTR TCA 90 bp | CCAAGTAACTGTCTTGCCAAGTCTGTAAGTCCTTCCTTGGTATTCACTTCCTGGGCTGGAGATGCCCCCTaGGGCACCCCAGGACAAGGG | + |
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Preference number: 4 (lower is better) Translates to: PSNCLAKSVSPSLVFTSWAGDAP*GTPGQG Trigger: CCCTTGTCCTGGGGTGCCTCAGGGGGCATCTCCAGC...CCAGGAAGTGAATACCAAGGAAGGACTTACAGACTTGGCAAGACAGTTACTTGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| CDS-3UTR GCA 90 bp | CAAAAGCCCAAGGATAGGGTGCCCTCTTCTGTAACCACTGGGCCTGGAAGGAGTGGGCTCTGCAAACGCTaGTTTCCAGAATGGACCTGG | + |
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Preference number: 4 (lower is better) Translates to: QKPKDRVPSSVTTGPGRSGLCKR*FPEWTW Trigger: CCAGGTCCATTCTGGAAAGCAGCGTTTGCAGAGCCC...ACTCCTTCCAGGCCCAGTGGTTACAGAAGAGGGCACCCTATCCTTGGGCTTTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| CDS-3UTR CCA 90 bp | GGCTTTGGGTGCCAGGAACCCCTCCAGGCTAATCCTGGGTCTCTTCAGTTTTTCAGCCTTCGATATCCTTaGCCCCGTCCAAGGTGGCAT | + |
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Preference number: 4 (lower is better) Translates to: GFGCQEPLQANPGSLQFFSLRYP*PRPRWH Trigger: ATGCCACCTTGGACGGGGCCAAGGATATCGAAGGCT...GAAAAACTGAAGAGACCCAGGATTAGCCTGGAGGGGTTCCTGGCACCCAAAGCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| CDS-3UTR CCA 90 bp | TGGCATCCTCTTCTCCCAGGCCTCGAGGAGAGAGGTTCCTTCAGTGTTAAAGAAGGCCATAGGCTGGTATaGTCCCGGGTAGCCCGGATA | + |
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Preference number: 4 (lower is better) Translates to: WHPLLPGLEERGSFSVKEGHRLV*SRVARI Trigger: TATCCGGGCTACCCGGGACCATACCAGCCTATGGCC...TTCTTTAACACTGAAGGAACCTCTCTCCTCGAGGCCTGGGAGAAGAGGATGCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| CDS-3UTR CCA 90 bp | GTCTATCCTGCCCTGGTATCATCTCAGAAAAATGCCAAGTGGGTATGGGCACCTCCTTGGCAACACATCTaGCTGTTCCAGCCACCGGCC | + |
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Preference number: 4 (lower is better) Translates to: VYPALVSSQKNAKWVWAPPWQHI*LFQPPA Trigger: GGCCGGTGGCTGGAACAGCCAGATGTGTTGCCAAGG...AGGTGCCCATACCCACTTGGCATTTTTCTGAGATGATACCAGGGCAGGATAGAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| CDS-3UTR CCA 90 bp | TACATGGAAAGGAATCTGAGAGGAAACTGTCCTACAAGATCGTCTTCCGAATTTTGGCCCCGTCCAAGGTaGCATAATTGCCGGGCTCCA | + |
|
Preference number: 4 (lower is better) Translates to: YMERNLRGNCPTRSSSEFWPRPR*HNCRAP Trigger: TGGAGCCCGGCAATTATGCCACCTTGGACGGGGCCA...AAATTCGGAAGACGATCTTGTAGGACAGTTTCCTCTCAGATTCCTTTCCATGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| CDS-3UTR CCA 90 bp | TACATGGAAAGGAATCTGAGAGGAAACTGTCCTACAAGATCGTCTTCCGAATTTGCCAGTGGGGAGGAGTaGGAGACTAGATTCCGACCC | + |
|
Preference number: 4 (lower is better) Translates to: YMERNLRGNCPTRSSSEFASGEE*ETRFRP Trigger: GGGTCGGAATCTAGTCTCCCACTCCTCCCCACTGGC...AAATTCGGAAGACGATCTTGTAGGACAGTTTCCTCTCAGATTCCTTTCCATGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| CDS-3UTR CCA 90 bp | CATCTCAGAAAAATGCCAAGTGGGTATGGGCACCTTAGAAGGATGAATCTACCTGGCATAGTTGACAGTTaGCATCAGCGTTGGAGCCGC | + |
|
Preference number: 4 (lower is better) Translates to: HLRKMPSGYGHLRRMNLPGIVDS*HQRWSR Trigger: GCGGCTCCAACGCTGATGCCAACTGTCAACTATGCC...AGGTAGATTCATCCTTCTAAGGTGCCCATACCCACTTGGCATTTTTCTGAGATG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| CDS-3UTR CCA 90 bp | TACATGGAAAGGAATCTGAGAGGAAACTGTCCTACAAGATCGTCTTCCGAATTTGTTCAGAGAGGCTGGTaGCTGCCGAGATCTTGCGCC | + |
|
Preference number: 4 (lower is better) Translates to: YMERNLRGNCPTRSSSEFVQRGW*LPRSCA Trigger: GGCGCAAGATCTCGGCAGCCACCAGCCTCTCTGAAC...AAATTCGGAAGACGATCTTGTAGGACAGTTTCCTCTCAGATTCCTTTCCATGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| CDS-3UTR GCA 90 bp | CCAAGTAACTGTCTTGCCAAGTCTGTAAGTCCTTCCTTGGTATTCACTTCCTGGCCCGCAACTGCCCCTTaGTATAGGGAATGCGTTTTT | + |
|
Preference number: 4 (lower is better) Translates to: PSNCLAKSVSPSLVFTSWPATAP*YRECVF Trigger: AAAAACGCATTCCCTATAGCAAGGGGCAGTTGCGGG...CCAGGAAGTGAATACCAAGGAAGGACTTACAGACTTGGCAAGACAGTTACTTGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| CDS-3UTR GCA 90 bp | TACATGGAAAGGAATCTGAGAGGAAACTGTCCTACAAGATCGTCTTCCGAATTTAGAGAGGCTGGTGGCTaGCGAGATCTTGCGCCTCTT | + |
|
Preference number: 4 (lower is better) Translates to: YMERNLRGNCPTRSSSEFREAGG*RDLAPL Trigger: AAGAGGCGCAAGATCTCGGCAGCCACCAGCCTCTCT...AAATTCGGAAGACGATCTTGTAGGACAGTTTCCTCTCAGATTCCTTTCCATGTA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| CDS-3UTR CCA 90 bp | CCAAGTAACTGTCTTGCCAAGTCTGTAAGTCCTTCCTTGGTATTCACTTCCTGGGTTTCAGGGAGCTCCTaGATACTCGGCAAGAGTAGT | + |
|
Preference number: 4 (lower is better) Translates to: PSNCLAKSVSPSLVFTSWVSGSS*ILGKSS Trigger: ACTACTCTTGCCGAGTATCCAGGAGCTCCCTGAAAC...CCAGGAAGTGAATACCAAGGAAGGACTTACAGACTTGGCAAGACAGTTACTTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| CDS-3UTR GCA 90 bp | CCAAGTAACTGTCTTGCCAAGTCTGTAAGTCCTTCCTTGGTATTCACTTCCTGGGATAAACTTGTTGGCTaGATACTCCCGCTCCAACTC | + |
|
Preference number: 4 (lower is better) Translates to: PSNCLAKSVSPSLVFTSWDKLVG*ILPLQL Trigger: GAGTTGGAGCGGGAGTATGCAGCCAACAAGTTTATC...CCAGGAAGTGAATACCAAGGAAGGACTTACAGACTTGGCAAGACAGTTACTTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| CDS-3UTR CCA 90 bp | TACATGGAAAGGAATCTGAGAGGAAACTGTCCTACAAGATCGTCTTCCGAATTTAGAAGGCAAACTCGGTaGGACGGCTGGGATACTCCT | + |
|
Preference number: 4 (lower is better) Translates to: YMERNLRGNCPTRSSSEFRRQTR*DGWDTP Trigger: AGGAGTATCCCAGCCGTCCCACCGAGTTTGCCTTCT...AAATTCGGAAGACGATCTTGTAGGACAGTTTCCTCTCAGATTCCTTTCCATGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| CDS-3UTR CCA 90 bp | CATCTCAGAAAAATGCCAAGTGGGTATGGGCACCTTAGAAGGATGAATCTACCTGGGTTCTGTTCACCTTaGCAACACATCTGGCTGTTC | + |
|
Preference number: 4 (lower is better) Translates to: HLRKMPSGYGHLRRMNLPGFCSP*QHIWLF Trigger: GAACAGCCAGATGTGTTGCCAAGGTGAACAGAACCC...AGGTAGATTCATCCTTCTAAGGTGCCCATACCCACTTGGCATTTTTCTGAGATG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| 3UTR CAA 72 bp | GGGCACTGGTTTCACTTCACTATAATATCTCAGCATTaGGGATGGGGGCTTCCCATTGTGTATAGCCTAGGA | + |
|
Preference number: 4 (lower is better) Translates to: GHWFHFTIISQH*GWGLPIVYSLG Trigger: TCCTAGGCTATACACAATGGGAAGCCCCCATCCCAAATGCTGAGATATTATAGTGAAGTGAAACCAGTGCCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| CDS-3UTR CCA 90 bp | ATTTGCCAAGAGAAGCAGAGTTTAAGAAAGTGCCCAAGTAACTGTCTTGCCAAGTTTCCAGAATGGACCTaGTGGGTTCTGTTCACCTTG | + |
|
Preference number: 4 (lower is better) Translates to: ICQEKQSLRKCPSNCLAKFPEWT*WVLFTL Trigger: CAAGGTGAACAGAACCCACCAGGTCCATTCTGGAAA...CTTGGCAAGACAGTTACTTGGGCACTTTCTTAAACTCTGCTTCTCTTGGCAAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| CDS CCA 90 bp | GGCATCAGCGTTGGAGCCGCGGGATGGCTAGCCAGTGGGGAGGAGTaGGAGACTAGATTCCGACCCCCTCCAGCTCCCAGCAAGCCTTCG | + |
|
Preference number: 5 (lower is better) Translates to: GISVGAAGWLASGEE*ETRFRPPPAPSKPS Trigger: CGAAGGCTTGCTGGGAGCTGGAGGGGGTCGGAATCTAGTCTCCCACTCCTCCCCACTGGCTAGCCATCCCGCGGCTCCAACGCTGATGCC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| CDS CCA 90 bp | GGCCTCGGCGGAAGGCACAGCCGTCGGGAGGAGGGTGCTGGACACTaGGCTCTGCAAACGCTGCTTTCCAGAATGGACCTGGTGGGTTCT | + |
|
Preference number: 5 (lower is better) Translates to: GLGGRHSRREEGAGH*ALQTLLSRMDLVGS Trigger: AGAACCCACCAGGTCCATTCTGGAAAGCAGCGTTTGCAGAGCCCAGTGTCCAGCACCCTCCTCCCGACGGCTGTGCCTTCCGCCGAGGCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| CDS GCA 90 bp | ATAGAAGGCAAACTCGGTGGGACGGCTGGGATACTCCTCCCCAGGTaGAGGAGTTTCCGAAGGGTAGGTAGCCAGGGCGGCCGTCTGGGC | + |
|
Preference number: 5 (lower is better) Translates to: IEGKLGGTAGILLPR*RSFRRVGSQGGRLG Trigger: GCCCAGACGGCCGCCCTGGCTACCTACCCTTCGGAAACTCCTGCACCTGGGGAGGAGTATCCCAGCCGTCCCACCGAGTTTGCCTTCTAT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| CDS GCA 90 bp | GCGGAAGGCACAGCCGTCGGGAGGAGGGTGCTGGACACTGGGCTCTaGAAACGCTGCTTTCCAGAATGGACCTGGTGGGTTCTGTTCACC | + |
|
Preference number: 5 (lower is better) Translates to: AEGTAVGRRVLDTGL*KRCFPEWTWWVLFT Trigger: GGTGAACAGAACCCACCAGGTCCATTCTGGAAAGCAGCGTTTGCAGAGCCCAGTGTCCAGCACCCTCCTCCCGACGGCTGTGCCTTCCGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| CDS GCA 90 bp | GTAGTACCCGCCTCCAAAGTAGCCATAAGGCACAGGAGCTGGAGATaGCCCCTGAGGCACCCCAGGACAAGGGTGGCACTGCTTTGGTGG | + |
|
Preference number: 5 (lower is better) Translates to: VVPASKVAIRHRSWR*PLRHPRTRVALLWW Trigger: CCACCAAAGCAGTGCCACCCTTGTCCTGGGGTGCCTCAGGGGGCATCTCCAGCTCCTGTGCCTTATGGCTACTTTGGAGGCGGGTACTAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| CDS CCA 90 bp | GCAAACGCTGCTTTCCAGAATGGACCTGGTGGGTTCTGTTCACCTTaGCAACACATCTGGCTGTTCCAGCCACCGGCCAGGGCCCAGGGC | + |
|
Preference number: 5 (lower is better) Translates to: ANAAFQNGPGGFCSP*QHIWLFQPPARAQG Trigger: GCCCTGGGCCCTGGCCGGTGGCTGGAACAGCCAGATGTGTTGCCAAGGTGAACAGAACCCACCAGGTCCATTCTGGAAAGCAGCGTTTGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| CDS CCA 90 bp | GCAAGAGTAGTACCCGCCTCCAAAGTAGCCATAAGGCACAGGAGCTaGAGATGCCCCCTGAGGCACCCCAGGACAAGGGTGGCACTGCTT | + |
|
Preference number: 5 (lower is better) Translates to: ARVVPASKVAIRHRS*RCPLRHPRTRVALL Trigger: AAGCAGTGCCACCCTTGTCCTGGGGTGCCTCAGGGGGCATCTCCAGCTCCTGTGCCTTATGGCTACTTTGGAGGCGGGTACTACTCTTGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| CDS CCA 90 bp | GGTCTGCACCACAGACACATCCAGGTAACTGGCCATAGGCTGGTATaGTCCCGGGTAGCCCGGATAGAAGGCAAACTCGGTGGGACGGCT | + |
|
Preference number: 5 (lower is better) Translates to: GLHHRHIQVTGHRLV*SRVARIEGKLGGTA Trigger: AGCCGTCCCACCGAGTTTGCCTTCTATCCGGGCTACCCGGGACCATACCAGCCTATGGCCAGTTACCTGGATGTGTCTGTGGTGCAGACC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| CDS GCA 90 bp | ACAGCCGTCGGGAGGAGGGTGCTGGACACTGGGCTCTGCAAACGCTaGTTTCCAGAATGGACCTGGTGGGTTCTGTTCACCTTGGCAACA | + |
|
Preference number: 5 (lower is better) Translates to: TAVGRRVLDTGLCKR*FPEWTWWVLFTLAT Trigger: TGTTGCCAAGGTGAACAGAACCCACCAGGTCCATTCTGGAAAGCAGCGTTTGCAGAGCCCAGTGTCCAGCACCCTCCTCCCGACGGCTGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| CDS CCA 90 bp | GTGCTGGACACTGGGCTCTGCAAACGCTGCTTTCCAGAATGGACCTaGTGGGTTCTGTTCACCTTGGCAACACATCTGGCTGTTCCAGCC | + |
|
Preference number: 5 (lower is better) Translates to: VLDTGLCKRCFPEWT*WVLFTLATHLAVPA Trigger: GGCTGGAACAGCCAGATGTGTTGCCAAGGTGAACAGAACCCACCAGGTCCATTCTGGAAAGCAGCGTTTGCAGAGCCCAGTGTCCAGCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| CDS CCA 90 bp | AGGAGGGTGCTGGACACTGGGCTCTGCAAACGCTGCTTTCCAGAATaGACCTGGTGGGTTCTGTTCACCTTGGCAACACATCTGGCTGTT | + |
|
Preference number: 5 (lower is better) Translates to: RRVLDTGLCKRCFPE*TWWVLFTLATHLAV Trigger: AACAGCCAGATGTGTTGCCAAGGTGAACAGAACCCACCAGGTCCATTCTGGAAAGCAGCGTTTGCAGAGCCCAGTGTCCAGCACCCTCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| CDS GCA 90 bp | TGCCGAGATCTTGCGCCTCTTGTCCTTAGTGATAAACTTGTTGGCTaGATACTCCCGCTCCAACTCCCGCAACTGCCCCTTGCTATAGGG | + |
|
Preference number: 5 (lower is better) Translates to: CRDLAPLVLSDKLVG*ILPLQLPQLPLAIG Trigger: CCCTATAGCAAGGGGCAGTTGCGGGAGTTGGAGCGGGAGTATGCAGCCAACAAGTTTATCACTAAGGACAAGAGGCGCAAGATCTCGGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| CDS-3UTR CAA 90 bp | GGCCACTTTGGCTTTGGGTGCCAGGAACCCCTCCAGGCTAATCCTGGGTCTCTTTCCTTAGTGATAAACTaGTTGGCTGCATACTCCCGC | + |
|
Preference number: 5 (lower is better) Translates to: GHFGFGCQEPLQANPGSLSLVIN*LAAYSR Trigger: GCGGGAGTATGCAGCCAACAAGTTTATCACTAAGGA...AAGAGACCCAGGATTAGCCTGGAGGGGTTCCTGGCACCCAAAGCCAAAGTGGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| CDS-3UTR CAA 90 bp | CAAAAGCCCAAGGATAGGGTGCCCTCTTCTGTAACCACTGGGCCTGGAAGGAGTGTGCTGGTCTTGACCTaGGCAAGAACCTTCTTCTCC | + |
|
Preference number: 5 (lower is better) Translates to: QKPKDRVPSSVTTGPGRSVLVLT*ARTFFS Trigger: GGAGAAGAAGGTTCTTGCCAAGGTCAAGACCAGCAC...ACTCCTTCCAGGCCCAGTGGTTACAGAAGAGGGCACCCTATCCTTGGGCTTTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| CDS-3UTR CAA 90 bp | GTATTCACTTCCTGGTGGGTTCTGACCCAATCAGGGCACTGGTTTCACTTCACTAAGCCTTCGATATCCTaGGCCCCGTCCAAGGTGGCA | + |
|
Preference number: 5 (lower is better) Translates to: VFTSWWVLTQSGHWFHFTKPSIS*APSKVA Trigger: TGCCACCTTGGACGGGGCCAAGGATATCGAAGGCTT...AGTGAAGTGAAACCAGTGCCCTGATTGGGTCAGAACCCACCAGGAAGTGAATAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| CDS-3UTR CAA 90 bp | GTATTCACTTCCTGGTGGGTTCTGACCCAATCAGGGCACTGGTTTCACTTCACTGTGGCTGCCGAGATCTaGCGCCTCTTGTCCTTAGTG | + |
|
Preference number: 5 (lower is better) Translates to: VFTSWWVLTQSGHWFHFTVAAEI*RLLSLV Trigger: CACTAAGGACAAGAGGCGCAAGATCTCGGCAGCCAC...AGTGAAGTGAAACCAGTGCCCTGATTGGGTCAGAACCCACCAGGAAGTGAATAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| CDS-3UTR CAA 90 bp | TGCCCTGGTATCATCTCAGAAAAATGCCAAGTGGGTATGGGCACCTTAGAAGGAGGGGTAGTGCTGGTCTaGACCTTGGCAAGAACCTTC | + |
|
Preference number: 5 (lower is better) Translates to: CPGIISEKCQVGMGTLEGGVVLV*TLARTF Trigger: GAAGGTTCTTGCCAAGGTCAAGACCAGCACTACCCC...TCCTTCTAAGGTGCCCATACCCACTTGGCATTTTTCTGAGATGATACCAGGGCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| CDS-3UTR CAA 90 bp | TGCCCTGGTATCATCTCAGAAAAATGCCAAGTGGGTATGGGCACCTTAGAAGGATGGGTTCTGTTCACCTaGGCAACACATCTGGCTGTT | + |
|
Preference number: 5 (lower is better) Translates to: CPGIISEKCQVGMGTLEGWVLFT*ATHLAV Trigger: AACAGCCAGATGTGTTGCCAAGGTGAACAGAACCCA...TCCTTCTAAGGTGCCCATACCCACTTGGCATTTTTCTGAGATGATACCAGGGCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| CDS-3UTR CAA 90 bp | CATCTCAGAAAAATGCCAAGTGGGTATGGGCACCTTAGAAGGATGAATCTACCTTTAGTGATAAACTTGTaGGCTGCATACTCCCGCTCC | + |
|
Preference number: 5 (lower is better) Translates to: HLRKMPSGYGHLRRMNLPLVINL*AAYSRS Trigger: GGAGCGGGAGTATGCAGCCAACAAGTTTATCACTAA...AGGTAGATTCATCCTTCTAAGGTGCCCATACCCACTTGGCATTTTTCTGAGATG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| CDS-3UTR CAA 90 bp | ATTTGCCAAGAGAAGCAGAGTTTAAGAAAGTGCCCAAGTAACTGTCTTGCCAAGGAGATCTTGCGCCTCTaGTCCTTAGTGATAAACTTG | + |
|
Preference number: 5 (lower is better) Translates to: ICQEKQSLRKCPSNCLAKEILRL*SLVINL Trigger: CAAGTTTATCACTAAGGACAAGAGGCGCAAGATCTC...CTTGGCAAGACAGTTACTTGGGCACTTTCTTAAACTCTGCTTCTCTTGGCAAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| CDS GCA 72 bp | CGGCCTCGGCGGAAGGCACAGCCGTCGGGAGGAGGGTaGTGGACACTGGGCTCTGCAAACGCTGCTTTCCAG | + |
|
Preference number: 6 (lower is better) Translates to: RPRRKAQPSGGG*WTLGSANAAFQ Trigger: CTGGAAAGCAGCGTTTGCAGAGCCCAGTGTCCAGCACCCTCCTCCCGACGGCTGTGCCTTCCGCCGAGGCCG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| CDS CCA 72 bp | GTTGGAGCCGCGGGATGGCTAGCCAGTGGGGAGGAGTaGGAGACTAGATTCCGACCCCCTCCAGCTCCCAGC | + |
|
Preference number: 6 (lower is better) Translates to: VGAAGWLASGEE*ETRFRPPPAPS Trigger: GCTGGGAGCTGGAGGGGGTCGGAATCTAGTCTCCCACTCCTCCCCACTGGCTAGCCATCCCGCGGCTCCAAC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| CDS CCA 72 bp | CCTCGGCGGAAGGCACAGCCGTCGGGAGGAGGGTGCTaGACACTGGGCTCTGCAAACGCTGCTTTCCAGAAT | + |
|
Preference number: 6 (lower is better) Translates to: PRRKAQPSGGGC*TLGSANAAFQN Trigger: ATTCTGGAAAGCAGCGTTTGCAGAGCCCAGTGTCCAGCACCCTCCTCCCGACGGCTGTGCCTTCCGCCGAGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| CDS CCA 72 bp | GACCCCCTCCAGCTCCCAGCAAGCCTTCGATATCCTTaGCCCCGTCCAAGGTGGCATAATTGCCGGGCTCCA | + |
|
Preference number: 6 (lower is better) Translates to: DPLQLPASLRYP*PRPRWHNCRAP Trigger: TGGAGCCCGGCAATTATGCCACCTTGGACGGGGCCAAGGATATCGAAGGCTTGCTGGGAGCTGGAGGGGGTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| CDS CCA 72 bp | GGGCGGCCGTCTGGGCACAGGGTTTCAGGGAGCTCCTaGATACTCGGCAAGAGTAGTACCCGCCTCCAAAGT | + |
|
Preference number: 6 (lower is better) Translates to: GRPSGHRVSGSS*ILGKSSTRLQS Trigger: ACTTTGGAGGCGGGTACTACTCTTGCCGAGTATCCAGGAGCTCCCTGAAACCCTGTGCCCAGACGGCCGCCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| CDS CCA 72 bp | GGAAGGCACAGCCGTCGGGAGGAGGGTGCTGGACACTaGGCTCTGCAAACGCTGCTTTCCAGAATGGACCTG | + |
|
Preference number: 6 (lower is better) Translates to: GRHSRREEGAGH*ALQTLLSRMDL Trigger: CAGGTCCATTCTGGAAAGCAGCGTTTGCAGAGCCCAGTGTCCAGCACCCTCCTCCCGACGGCTGTGCCTTCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| CDS GCA 72 bp | ACAGCCGTCGGGAGGAGGGTGCTGGACACTGGGCTCTaGAAACGCTGCTTTCCAGAATGGACCTGGTGGGTT | + |
|
Preference number: 6 (lower is better) Translates to: TAVGRRVLDTGL*KRCFPEWTWWV Trigger: AACCCACCAGGTCCATTCTGGAAAGCAGCGTTTGCAGAGCCCAGTGTCCAGCACCCTCCTCCCGACGGCTGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| CDS CCA 72 bp | GGTAGCCCGGATAGAAGGCAAACTCGGTGGGACGGCTaGGATACTCCTCCCCAGGTGCAGGAGTTTCCGAAG | + |
|
Preference number: 6 (lower is better) Translates to: GSPDRRQTRWDG*DTPPQVQEFPK Trigger: CTTCGGAAACTCCTGCACCTGGGGAGGAGTATCCCAGCCGTCCCACCGAGTTTGCCTTCTATCCGGGCTACC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| CDS CAA 90 bp | TGCAAACGCTGCTTTCCAGAATGGACCTGGTGGGTTCTGTTCACCTaGGCAACACATCTGGCTGTTCCAGCCACCGGCCAGGGCCCAGGG | + |
|
Preference number: 6 (lower is better) Translates to: CKRCFPEWTWWVLFT*ATHLAVPATGQGPG Trigger: CCCTGGGCCCTGGCCGGTGGCTGGAACAGCCAGATGTGTTGCCAAGGTGAACAGAACCCACCAGGTCCATTCTGGAAAGCAGCGTTTGCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| CDS CAA 90 bp | CTGGTGGCTGCCGAGATCTTGCGCCTCTTGTCCTTAGTGATAAACTaGTTGGCTGCATACTCCCGCTCCAACTCCCGCAACTGCCCCTTG | + |
|
Preference number: 6 (lower is better) Translates to: LVAAEILRLLSLVIN*LAAYSRSNSRNCPL Trigger: CAAGGGGCAGTTGCGGGAGTTGGAGCGGGAGTATGCAGCCAACAAGTTTATCACTAAGGACAAGAGGCGCAAGATCTCGGCAGCCACCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| CDS CCA 72 bp | CACAGACACATCCAGGTAACTGGCCATAGGCTGGTATaGTCCCGGGTAGCCCGGATAGAAGGCAAACTCGGT | + |
|
Preference number: 6 (lower is better) Translates to: HRHIQVTGHRLV*SRVARIEGKLG Trigger: ACCGAGTTTGCCTTCTATCCGGGCTACCCGGGACCATACCAGCCTATGGCCAGTTACCTGGATGTGTCTGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| CDS CAA 72 bp | TGCTTTCCAGAATGGACCTGGTGGGTTCTGTTCACCTaGGCAACACATCTGGCTGTTCCAGCCACCGGCCAG | + |
|
Preference number: 6 (lower is better) Translates to: CFPEWTWWVLFT*ATHLAVPATGQ Trigger: CTGGCCGGTGGCTGGAACAGCCAGATGTGTTGCCAAGGTGAACAGAACCCACCAGGTCCATTCTGGAAAGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| CDS CAA 90 bp | GTGGCTGCCGAGATCTTGCGCCTCTTGTCCTTAGTGATAAACTTGTaGGCTGCATACTCCCGCTCCAACTCCCGCAACTGCCCCTTGCTA | + |
|
Preference number: 6 (lower is better) Translates to: VAAEILRLLSLVINL*AAYSRSNSRNCPLL Trigger: TAGCAAGGGGCAGTTGCGGGAGTTGGAGCGGGAGTATGCAGCCAACAAGTTTATCACTAAGGACAAGAGGCGCAAGATCTCGGCAGCCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| CDS CAA 90 bp | ATCTGGCGTTCAGAGAGGCTGGTGGCTGCCGAGATCTTGCGCCTCTaGTCCTTAGTGATAAACTTGTTGGCTGCATACTCCCGCTCCAAC | + |
|
Preference number: 6 (lower is better) Translates to: IWRSERLVAAEILRL*SLVINLLAAYSRSN Trigger: GTTGGAGCGGGAGTATGCAGCCAACAAGTTTATCACTAAGGACAAGAGGCGCAAGATCTCGGCAGCCACCAGCCTCTCTGAACGCCAGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
||
| CDS GCA 72 bp | CTTGCGCCTCTTGTCCTTAGTGATAAACTTGTTGGCTaGATACTCCCGCTCCAACTCCCGCAACTGCCCCTT | + |
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Preference number: 6 (lower is better) Translates to: LAPLVLSDKLVG*ILPLQLPQLPL Trigger: AAGGGGCAGTTGCGGGAGTTGGAGCGGGAGTATGCAGCCAACAAGTTTATCACTAAGGACAAGAGGCGCAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| CDS CCA 72 bp | ACTGGGCTCTGCAAACGCTGCTTTCCAGAATGGACCTaGTGGGTTCTGTTCACCTTGGCAACACATCTGGCT | + |
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Preference number: 6 (lower is better) Translates to: TGLCKRCFPEWT*WVLFTLATHLA Trigger: AGCCAGATGTGTTGCCAAGGTGAACAGAACCCACCAGGTCCATTCTGGAAAGCAGCGTTTGCAGAGCCCAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| CDS CAA 72 bp | GCCGAGATCTTGCGCCTCTTGTCCTTAGTGATAAACTaGTTGGCTGCATACTCCCGCTCCAACTCCCGCAAC | + |
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Preference number: 6 (lower is better) Translates to: AEILRLLSLVIN*LAAYSRSNSRN Trigger: GTTGCGGGAGTTGGAGCGGGAGTATGCAGCCAACAAGTTTATCACTAAGGACAAGAGGCGCAAGATCTCGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| CDS GCA 72 bp | CCAGATGGTAATCTGGCGTTCAGAGAGGCTGGTGGCTaGCGAGATCTTGCGCCTCTTGTCCTTAGTGATAAA | + |
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Preference number: 6 (lower is better) Translates to: PDGNLAFREAGG*RDLAPLVLSDK Trigger: TTTATCACTAAGGACAAGAGGCGCAAGATCTCGGCAGCCACCAGCCTCTCTGAACGCCAGATTACCATCTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| CDS CAA 72 bp | GAGATCTTGCGCCTCTTGTCCTTAGTGATAAACTTGTaGGCTGCATACTCCCGCTCCAACTCCCGCAACTGC | + |
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Preference number: 6 (lower is better) Translates to: EILRLLSLVINL*AAYSRSNSRNC Trigger: GCAGTTGCGGGAGTTGGAGCGGGAGTATGCAGCCAACAAGTTTATCACTAAGGACAAGAGGCGCAAGATCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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| CDS CAA 72 bp | TCAGAGAGGCTGGTGGCTGCCGAGATCTTGCGCCTCTaGTCCTTAGTGATAAACTTGTTGGCTGCATACTCC | + |
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Preference number: 6 (lower is better) Translates to: SERLVAAEILRL*SLVINLLAAYS Trigger: GGAGTATGCAGCCAACAAGTTTATCACTAAGGACAAGAGGCGCAAGATCTCGGCAGCCACCAGCCTCTCTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062709.4 |
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