Pregenerated sensors for HOXB1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000018973Ensembl transcript IDs: ENSMUST00000019117.3
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ACATTTCCCAACTCCTGCCCAGTTTCCTGGGCAGCTCTAAACTGGTaGCTCGGCCTTGAGGAGGGTCACCAAGGCTGTGAAGTTTGGGAA | + |
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Preference number: 1 (lower is better) Translates to: TFPNSCPVSWAALNW*LGLEEGHQGCEVWE Trigger: TTCCCAAACTTCACAGCCTTGGTGACCCTCCTCAAGGCCGAGGCACCAGTTTAGAGCTGCCCAGGAAACTGGGCAGGAGTTGGGAAATGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| 3UTR TCA 90 bp | AACTCAAGTGGCCTCTCTGCTGTCTCCGGGGTTTGGAGAAATGTCTaGAGAGACTGGAAACTCTGTCACCATTCCTGGGCCTCCCCAGAC | + |
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Preference number: 1 (lower is better) Translates to: NSSGLSAVSGVWRNV*RDWKLCHHSWASPD Trigger: GTCTGGGGAGGCCCAGGAATGGTGACAGAGTTTCCAGTCTCTTCAGACATTTCTCCAAACCCCGGAGACAGCAGAGAGGCCACTTGAGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| 3UTR CCA 90 bp | AATACATTTCCCAACTCCTGCCCAGTTTCCTGGGCAGCTCTAAACTaGTGCCTCGGCCTTGAGGAGGGTCACCAAGGCTGTGAAGTTTGG | + |
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Preference number: 1 (lower is better) Translates to: NTFPNSCPVSWAALN*CLGLEEGHQGCEVW Trigger: CCAAACTTCACAGCCTTGGTGACCCTCCTCAAGGCCGAGGCACCAGTTTAGAGCTGCCCAGGAAACTGGGCAGGAGTTGGGAAATGTATT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| 3UTR GCA 90 bp | TCCACCCCTAGATCTGAGAGAGAGAAAAATACATTTCCCAACTCCTaGCCAGTTTCCTGGGCAGCTCTAAACTGGTGCCTCGGCCTTGAG | + |
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Preference number: 1 (lower is better) Translates to: STPRSEREKNTFPNS*PVSWAALNWCLGLE Trigger: CTCAAGGCCGAGGCACCAGTTTAGAGCTGCCCAGGAAACTGGGCAGGAGTTGGGAAATGTATTTTTCTCTCTCTCAGATCTAGGGGTGGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| 3UTR CCA 90 bp | TCTGAGAGAGAGAAAAATACATTTCCCAACTCCTGCCCAGTTTCCTaGGCAGCTCTAAACTGGTGCCTCGGCCTTGAGGAGGGTCACCAA | + |
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Preference number: 1 (lower is better) Translates to: SEREKNTFPNSCPVS*AALNWCLGLEEGHQ Trigger: TTGGTGACCCTCCTCAAGGCCGAGGCACCAGTTTAGAGCTGCCCAGGAAACTGGGCAGGAGTTGGGAAATGTATTTTTCTCTCTCTCAGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| 3UTR GCA 90 bp | TCACAAGGCAGTCGGTGCTATTGTAAGGTCTGCTATTGTAAGGTCTaGGGTGAGTTGGCTGGATTAAGATTAAGGGTTGGTGGCGATTGG | + |
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Preference number: 1 (lower is better) Translates to: SQGSRCYCKVCYCKV*GELAGLRLRVGGDW Trigger: CCAATCGCCACCAACCCTTAATCTTAATCCAGCCAACTCACCGCAGACCTTACAATAGCAGACCTTACAATAGCACCGACTGCCTTGTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| 3UTR TCA 90 bp | CTAAGAATTCGAAAGAAGAACTCTCTAAGCTCAAAGGCACTGAACTaGGTTGGAAGGGAAAGGAGAAGCCCGAAAGGATGGGCTGACTCC | + |
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Preference number: 1 (lower is better) Translates to: LRIRKKNSLSSKALN*VGRERRSPKGWADS Trigger: GGAGTCAGCCCATCCTTTCGGGCTTCTCCTTTCCCTTCCAACTCAGTTCAGTGCCTTTGAGCTTAGAGAGTTCTTCTTTCGAATTCTTAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| 3UTR-3UTR GCA 90 bp | GAGCTTGGTTTTCTAGAAACTCAAGTGGCCTCTCTGCTGTCTCCGGGGTTTGGATGGGCCTCCCCAGACTaGCCCAGGGGTAGGGTGGTT | + |
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Preference number: 2 (lower is better) Translates to: ELGFLETQVASLLSPGFGWASPD*PRGRVV Trigger: AACCACCCTACCCCTGGGGCAGTCTGGGGAGGCCCA...TCCAAACCCCGGAGACAGCAGAGAGGCCACTTGAGTTTCTAGAAAACCAAGCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| 3UTR-3UTR TCA 90 bp | CTCCGGGGTTTGGAGAAATGTCTGAAGAGACTGGAAACTCTGTCACCATTCCTGCTGGTGCCTCGGCCTTaGGGAGGGTCACCAAGGCTG | + |
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Preference number: 2 (lower is better) Translates to: LRGLEKCLKRLETLSPFLLVPRP*GGSPRL Trigger: CAGCCTTGGTGACCCTCCTCAAGGCCGAGGCACCAG...CAGGAATGGTGACAGAGTTTCCAGTCTCTTCAGACATTTCTCCAAACCCCGGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| 3UTR-3UTR GCA 90 bp | CTCCGGGGTTTGGAGAAATGTCTGAAGAGACTGGAAACTCTGTCACCATTCCTGGCAGCTCTAAACTGGTaGCTCGGCCTTGAGGAGGGT | + |
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Preference number: 2 (lower is better) Translates to: LRGLEKCLKRLETLSPFLAALNW*LGLEEG Trigger: ACCCTCCTCAAGGCCGAGGCACCAGTTTAGAGCTGC...CAGGAATGGTGACAGAGTTTCCAGTCTCTTCAGACATTTCTCCAAACCCCGGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| 3UTR-3UTR GCA 90 bp | CAAAGAGAACCTGGCTTGCTTGGAGCTTGGTTTTCTAGAAACTCAAGTGGCCTCACATTTCCCAACTCCTaGCCAGTTTCCTGGGCAGCT | + |
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Preference number: 2 (lower is better) Translates to: QREPGLLGAWFSRNSSGLTFPNS*PVSWAA Trigger: AGCTGCCCAGGAAACTGGGCAGGAGTTGGGAAATGT...GAGGCCACTTGAGTTTCTAGAAAACCAAGCTCCAAGCAAGCCAGGTTCTCTTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| 3UTR-3UTR CCA 90 bp | CTCCGGGGTTTGGAGAAATGTCTGAAGAGACTGGAAACTCTGTCACCATTCCTGAGAAGCCCGAAAGGATaGGCTGACTCCAGATCAAAG | + |
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Preference number: 2 (lower is better) Translates to: LRGLEKCLKRLETLSPFLRSPKG*ADSRSK Trigger: CTTTGATCTGGAGTCAGCCCATCCTTTCGGGCTTCT...CAGGAATGGTGACAGAGTTTCCAGTCTCTTCAGACATTTCTCCAAACCCCGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| 3UTR-3UTR CCA 90 bp | AACAGACTTTATTGCAATGAGGTAGTTGCAGATACAAAGAGAACCTGGCTTGCTCTCTGTCACCATTCCTaGGCCTCCCCAGACTGCCCC | + |
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Preference number: 2 (lower is better) Translates to: NRLYCNEVVADTKRTWLALCHHS*ASPDCP Trigger: GGGGCAGTCTGGGGAGGCCCAGGAATGGTGACAGAG...AGCAAGCCAGGTTCTCTTTGTATCTGCAACTACCTCATTGCAATAAAGTCTGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| 3UTR CAA 90 bp | AGTCGGTGCTATTGTAAGGTCTGCTATTGTAAGGTCTGCGGTGAGTaGGCTGGATTAAGATTAAGGGTTGGTGGCGATTGGGCTCACACT | + |
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Preference number: 2 (lower is better) Translates to: SRCYCKVCYCKVCGE*AGLRLRVGGDWAHT Trigger: AGTGTGAGCCCAATCGCCACCAACCCTTAATCTTAATCCAGCCAACTCACCGCAGACCTTACAATAGCAGACCTTACAATAGCACCGACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| 3UTR-3UTR GCA 90 bp | CTGAGGGCTGCATTAGTGCAAAAGACATGTGCCAGGAAAAGGGTTGTGGGATTATCACAAGGCAGTCGGTaGTATTGTAAGGTCTGCTAT | + |
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Preference number: 2 (lower is better) Translates to: LRAALVQKTCARKRVVGLSQGSR*YCKVCY Trigger: ATAGCAGACCTTACAATAGCACCGACTGCCTTGTGA...TAATCCCACAACCCTTTTCCTGGCACATGTCTTTTGCACTAATGCAGCCCTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| 3UTR CCA 72 bp | CCCAACTCCTGCCCAGTTTCCTGGGCAGCTCTAAACTaGTGCCTCGGCCTTGAGGAGGGTCACCAAGGCTGT | + |
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Preference number: 3 (lower is better) Translates to: PNSCPVSWAALN*CLGLEEGHQGC Trigger: ACAGCCTTGGTGACCCTCCTCAAGGCCGAGGCACCAGTTTAGAGCTGCCCAGGAAACTGGGCAGGAGTTGGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| 3UTR TCA 72 bp | GGCCTCTCTGCTGTCTCCGGGGTTTGGAGAAATGTCTaGAGAGACTGGAAACTCTGTCACCATTCCTGGGCC | + |
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Preference number: 3 (lower is better) Translates to: GLSAVSGVWRNV*RDWKLCHHSWA Trigger: GGCCCAGGAATGGTGACAGAGTTTCCAGTCTCTTCAGACATTTCTCCAAACCCCGGAGACAGCAGAGAGGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| 3UTR-3UTR CAA 90 bp | CAAAGAGAACCTGGCTTGCTTGGAGCTTGGTTTTCTAGAAACTCAAGTGGCCTCACTGGTGCCTCGGCCTaGAGGAGGGTCACCAAGGCT | + |
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Preference number: 3 (lower is better) Translates to: QREPGLLGAWFSRNSSGLTGASA*RRVTKA Trigger: AGCCTTGGTGACCCTCCTCAAGGCCGAGGCACCAGT...GAGGCCACTTGAGTTTCTAGAAAACCAAGCTCCAAGCAAGCCAGGTTCTCTTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| 3UTR CCA 72 bp | CTCGGCCTTGAGGAGGGTCACCAAGGCTGTGAAGTTTaGGAAAGTCTTCGAGAGAACTGGTCAAGCGTTGGA | + |
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Preference number: 3 (lower is better) Translates to: LGLEEGHQGCEV*ESLRENWSSVG Trigger: TCCAACGCTTGACCAGTTCTCTCGAAGACTTTCCCAAACTTCACAGCCTTGGTGACCCTCCTCAAGGCCGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| 3UTR CCA 72 bp | GAGAAAAATACATTTCCCAACTCCTGCCCAGTTTCCTaGGCAGCTCTAAACTGGTGCCTCGGCCTTGAGGAG | + |
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Preference number: 3 (lower is better) Translates to: EKNTFPNSCPVS*AALNWCLGLEE Trigger: CTCCTCAAGGCCGAGGCACCAGTTTAGAGCTGCCCAGGAAACTGGGCAGGAGTTGGGAAATGTATTTTTCTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| 3UTR TCA 72 bp | CGAAAGAAGAACTCTCTAAGCTCAAAGGCACTGAACTaGGTTGGAAGGGAAAGGAGAAGCCCGAAAGGATGG | + |
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Preference number: 3 (lower is better) Translates to: RKKNSLSSKALN*VGRERRSPKGW Trigger: CCATCCTTTCGGGCTTCTCCTTTCCCTTCCAACTCAGTTCAGTGCCTTTGAGCTTAGAGAGTTCTTCTTTCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| 3UTR GCA 72 bp | AGATCTGAGAGAGAGAAAAATACATTTCCCAACTCCTaGCCAGTTTCCTGGGCAGCTCTAAACTGGTGCCTC | + |
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Preference number: 3 (lower is better) Translates to: RSEREKNTFPNS*PVSWAALNWCL Trigger: GAGGCACCAGTTTAGAGCTGCCCAGGAAACTGGGCAGGAGTTGGGAAATGTATTTTTCTCTCTCTCAGATCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| 3UTR GCA 72 bp | GGTATGTCACAAGGCAGTCGGTGCTATTGTAAGGTCTaGTATTGTAAGGTCTGCGGTGAGTTGGCTGGATTA | + |
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Preference number: 3 (lower is better) Translates to: GMSQGSRCYCKV*YCKVCGELAGL Trigger: TAATCCAGCCAACTCACCGCAGACCTTACAATAGCAGACCTTACAATAGCACCGACTGCCTTGTGACATACC 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| 3UTR TCA 72 bp | TTCTTGGTTGAGGCTTGCTTGAGGCAGTCCTTGCAATaGTGCTCTGGAAATCTCCATAGTGCCAAGTTCCAA | + |
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Preference number: 3 (lower is better) Translates to: FLVEACLRQSLQ*CSGNLHSAKFQ Trigger: TTGGAACTTGGCACTATGGAGATTTCCAGAGCATCATTGCAAGGACTGCCTCAAGCAAGCCTCAACCAAGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| 3UTR GCA 72 bp | AGTCGGTGCTATTGTAAGGTCTGCTATTGTAAGGTCTaGGGTGAGTTGGCTGGATTAAGATTAAGGGTTGGT | + |
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Preference number: 3 (lower is better) Translates to: SRCYCKVCYCKV*GELAGLRLRVG Trigger: ACCAACCCTTAATCTTAATCCAGCCAACTCACCGCAGACCTTACAATAGCAGACCTTACAATAGCACCGACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| 3UTR CCA 72 bp | TCCCAGCCTAGACATCCCAGACCTAGAAAGAAGAGTTaGGCTAAGAATTCGAAAGAAGAACTCTCTAAGCTC | + |
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Preference number: 3 (lower is better) Translates to: SQPRHPRPRKKS*AKNSKEELSKL Trigger: GAGCTTAGAGAGTTCTTCTTTCGAATTCTTAGCCCAACTCTTCTTTCTAGGTCTGGGATGTCTAGGCTGGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| 3UTR-3UTR CAA 90 bp | AACAGACTTTATTGCAATGAGGTAGTTGCAGATACAAAGAGAACCTGGCTTGCTGTGCCAGGAAAAGGGTaGTGGGATTACTTGGGAGTA | + |
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Preference number: 3 (lower is better) Translates to: NRLYCNEVVADTKRTWLAVPGKG*WDYLGV Trigger: TACTCCCAAGTAATCCCACAACCCTTTTCCTGGCAC...AGCAAGCCAGGTTCTCTTTGTATCTGCAACTACCTCATTGCAATAAAGTCTGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| CDS-3UTR CCA 90 bp | CAAGGCAGTCGGTGCTATTGTAAGGTCTGCTATTGTAAGGTCTGCGGTGAGTTGGGGGTTGCAGGCGGCTaGGGCGTACCCCGAGGGAGC | + |
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Preference number: 4 (lower is better) Translates to: QGSRCYCKVCYCKVCGELGVAGG*GVPRGS Trigger: GCTCCCTCGGGGTACGCCCCAGCCGCCTGCAACCCC...CAACTCACCGCAGACCTTACAATAGCAGACCTTACAATAGCACCGACTGCCTTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| CDS-3UTR TCA 90 bp | CAAGGCAGTCGGTGCTATTGTAAGGTCTGCTATTGTAAGGTCTGCGGTGAGTTGCGGAGGATATGGCCCTaGGCCGACTCCACCCGCTCC | + |
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Preference number: 4 (lower is better) Translates to: QGSRCYCKVCYCKVCGELRRIWP*ADSTRS Trigger: GGAGCGGGTGGAGTCGGCTCAGGGCCATATCCTCCG...CAACTCACCGCAGACCTTACAATAGCAGACCTTACAATAGCACCGACTGCCTTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| CDS-3UTR TCA 90 bp | GAGCTTGGTTTTCTAGAAACTCAAGTGGCCTCTCTGCTGTCTCCGGGGTTTGGACGAAGGTCCGGGGAGTaGGAGTGCTGGGTTCTGACG | + |
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Preference number: 4 (lower is better) Translates to: ELGFLETQVASLLSPGFGRRSGE*ECWVLT Trigger: CGTCAGAACCCAGCACTCTCACTCCCCGGACCTTCG...TCCAAACCCCGGAGACAGCAGAGAGGCCACTTGAGTTTCTAGAAAACCAAGCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| CDS-3UTR CCA 90 bp | CAAGGCAGTCGGTGCTATTGTAAGGTCTGCTATTGTAAGGTCTGCGGTGAGTTGACTGGGCGAGGCTTCTaGGGAGGTGCACGCGGACTG | + |
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Preference number: 4 (lower is better) Translates to: QGSRCYCKVCYCKVCGELTGRGF*GGARGL Trigger: CAGTCCGCGTGCACCTCCCCAGAAGCCTCGCCCAGT...CAACTCACCGCAGACCTTACAATAGCAGACCTTACAATAGCACCGACTGCCTTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| CDS-3UTR TCA 90 bp | CCTTGCAATGATGCTCTGGAAATCTCCATAGTGCCAAGTTCCAAAACACTTTGGGGACACCCCCAGGGATaGCGGCGGCTGCTGGACAGG | + |
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Preference number: 4 (lower is better) Translates to: PCNDALEISIVPSSKTLWGHPQG*RRLLDR Trigger: CCTGTCCAGCAGCCGCCGTCATCCCTGGGGGTGTCC...CCAAAGTGTTTTGGAACTTGGCACTATGGAGATTTCCAGAGCATCATTGCAAGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| CDS-3UTR TCA 90 bp | GAAAAATACATTTCCCAACTCCTGCCCAGTTTCCTGGGCAGCTCTAAACTGGTGTCAGCTGGCGCGTGGTaGAGTTTGTGCGGAGACCGC | + |
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Preference number: 4 (lower is better) Translates to: EKYISQLLPSFLGSSKLVSAGAW*SLCGDR Trigger: GCGGTCTCCGCACAAACTTCACCACGCGCCAGCTGA...CACCAGTTTAGAGCTGCCCAGGAAACTGGGCAGGAGTTGGGAAATGTATTTTTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| CDS-3UTR GCA 90 bp | GAAAAATACATTTCCCAACTCCTGCCCAGTTTCCTGGGCAGCTCTAAACTGGTGATAGCGGCTCTCCCCTaGGTAGCTGTCAACGGCCGG | + |
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Preference number: 4 (lower is better) Translates to: EKYISQLLPSFLGSSKLVIAALP*VAVNGR Trigger: CCGGCCGTTGACAGCTACGCAGGGGAGAGCCGCTAT...CACCAGTTTAGAGCTGCCCAGGAAACTGGGCAGGAGTTGGGAAATGTATTTTTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| CDS-3UTR GCA 90 bp | CCTTGCAATGATGCTCTGGAAATCTCCATAGTGCCAAGTTCCAAAACACTTTGGGGCCTGCAGGCATCCTaGCCCCCTCTCGCTCGCGTT | + |
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Preference number: 4 (lower is better) Translates to: PCNDALEISIVPSSKTLWGLQAS*PPLARV Trigger: AACGCGAGCGAGAGGGGGGCAGGATGCCTGCAGGCC...CCAAAGTGTTTTGGAACTTGGCACTATGGAGATTTCCAGAGCATCATTGCAAGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| CDS-3UTR GCA 90 bp | CTGAGGGCTGCATTAGTGCAAAAGACATGTGCCAGGAAAAGGGTTGTGGGATTAAGGCTTCTGGGGAGGTaGACGCGGACTGGTCAGAGG | + |
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Preference number: 4 (lower is better) Translates to: LRAALVQKTCARKRVVGLRLLGR*TRTGQR Trigger: CCTCTGACCAGTCCGCGTGCACCTCCCCAGAAGCCT...TAATCCCACAACCCTTTTCCTGGCACATGTCTTTTGCACTAATGCAGCCCTCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| CDS-3UTR CCA 90 bp | CAAAGAGAACCTGGCTTGCTTGGAGCTTGGTTTTCTAGAAACTCAAGTGGCCTCGAGGTGCACGCGGACTaGTCAGAGGCATCTCCAGCG | + |
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Preference number: 4 (lower is better) Translates to: QREPGLLGAWFSRNSSGLEVHAD*SEASPA Trigger: CGCTGGAGATGCCTCTGACCAGTCCGCGTGCACCTC...GAGGCCACTTGAGTTTCTAGAAAACCAAGCTCCAAGCAAGCCAGGTTCTCTTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| CDS-3UTR TCA 90 bp | CAAAGAGAACCTGGCTTGCTTGGAGCTTGGTTTTCTAGAAACTCAAGTGGCCTCTCACCTGCGTTTCATTaGGCTCCAGGGTGGCGGCGA | + |
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Preference number: 4 (lower is better) Translates to: QREPGLLGAWFSRNSSGLSPAFH*APGWRR Trigger: TCGCCGCCACCCTGGAGCTCAATGAAACGCAGGTGA...GAGGCCACTTGAGTTTCTAGAAAACCAAGCTCCAAGCAAGCCAGGTTCTCTTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| CDS-3UTR CCA 90 bp | TATTGTAAGGTCTGCTATTGTAAGGTCTGCGGTGAGTTGGCTGGATTAAGATTACCGAGGGAGCGGGGCTaGGAAAGGACACCCCCAGGG | + |
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Preference number: 4 (lower is better) Translates to: YCKVCYCKVCGELAGLRLPRERG*ERTPPG Trigger: CCCTGGGGGTGTCCTTTCCCAGCCCCGCTCCCTCGG...TAATCTTAATCCAGCCAACTCACCGCAGACCTTACAATAGCAGACCTTACAATA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| CDS-3UTR CCA 90 bp | CCTTGCAATGATGCTCTGGAAATCTCCATAGTGCCAAGTTCCAAAACACTTTGGTTCCTTTGGGCAACCTaGGGGGCCTGCAGGCATCCT | + |
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Preference number: 4 (lower is better) Translates to: PCNDALEISIVPSSKTLWFLWAT*GACRHP Trigger: AGGATGCCTGCAGGCCCCCCAGGTTGCCCAAAGGAA...CCAAAGTGTTTTGGAACTTGGCACTATGGAGATTTCCAGAGCATCATTGCAAGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| CDS-3UTR TCA 90 bp | AAAGAGAACCTGGCTTGCTTGGAGCTTGGTTTTCTAGAAACTCAAGTGGCCTCTGAGAGTGCTGGGTTCTaGCGAGCAAGGCGATTCCTT | + |
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Preference number: 4 (lower is better) Translates to: KENLACLELGFLETQVASESAGF*RARRFL Trigger: AAGGAATCGCCTTGCTCGTCAGAACCCAGCACTCTC...AGAGGCCACTTGAGTTTCTAGAAAACCAAGCTCCAAGCAAGCCAGGTTCTCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| CDS-3UTR CCA 90 bp | AACAGACTTTATTGCAATGAGGTAGTTGCAGATACAAAGAGAACCTGGCTTGCTGGGCGCTGTAGGCGCTaGGTCCCCGGTTACAAAGTG | + |
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Preference number: 4 (lower is better) Translates to: NRLYCNEVVADTKRTWLAGRCRR*VPGYKV Trigger: CACTTTGTAACCGGGGACCCAGCGCCTACAGCGCCC...AGCAAGCCAGGTTCTCTTTGTATCTGCAACTACCTCATTGCAATAAAGTCTGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| 3UTR CAA 72 bp | TATTGTAAGGTCTGCTATTGTAAGGTCTGCGGTGAGTaGGCTGGATTAAGATTAAGGGTTGGTGGCGATTGG | + |
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Preference number: 4 (lower is better) Translates to: YCKVCYCKVCGE*AGLRLRVGGDW Trigger: CCAATCGCCACCAACCCTTAATCTTAATCCAGCCAACTCACCGCAGACCTTACAATAGCAGACCTTACAATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| CDS TCA 90 bp | GACCTTCATCCAGTCGAAGGTCCGGGGAGTGAGAGTGCTGGGTTCTaGCGAGCAAGGCGATTCCTTGTCCTCAGAGAGGAGGTCGTAGGC | + |
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Preference number: 5 (lower is better) Translates to: DLHPVEGPGSESAGF*RARRFLVLREEVVG Trigger: GCCTACGACCTCCTCTCTGAGGACAAGGAATCGCCTTGCTCGTCAGAACCCAGCACTCTCACTCCCCGGACCTTCGACTGGATGAAGGTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| CDS-3UTR CAA 90 bp | AAAGAGAACCTGGCTTGCTTGGAGCTTGGTTTTCTAGAAACTCAAGTGGCCTCTAGGCTGATGCAAAGGTaGCGGTCTGCTCAGTTCCGT | + |
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Preference number: 5 (lower is better) Translates to: KENLACLELGFLETQVASRLMQR*RSAQFR Trigger: ACGGAACTGAGCAGACCGCAACCTTTGCATCAGCCT...AGAGGCCACTTGAGTTTCTAGAAAACCAAGCTCCAAGCAAGCCAGGTTCTCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| CDS-3UTR CAA 90 bp | CTAGACATCCCAGACCTAGAAAGAAGAGTTGGGCTAAGAATTCGAAAGAAGAACTTCACCTGCGTTTCATaGAGCTCCAGGGTGGCGGCG | + |
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Preference number: 5 (lower is better) Translates to: LDIPDLERRVGLRIRKKNFTCVS*SSRVAA Trigger: CGCCGCCACCCTGGAGCTCAATGAAACGCAGGTGAA...GTTCTTCTTTCGAATTCTTAGCCCAACTCTTCTTTCTAGGTCTGGGATGTCTAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| CDS TCA 72 bp | AGTTCCGTATGGGGGCTGCGGCGGAGGATATGGCCCTaGGCCGACTCCACCCGCTCCATAGCTGTCGGGCAA | + |
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Preference number: 6 (lower is better) Translates to: SSVWGLRRRIWP*ADSTRSIAVGQ Trigger: TTGCCCGACAGCTATGGAGCGGGTGGAGTCGGCTCAGGGCCATATCCTCCGCCGCAGCCCCCATACGGAACT 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| CDS GCA 72 bp | GCAAAGGTTGCGGTCTGCTCAGTTCCGTATGGGGGCTaGGGCGGAGGATATGGCCCTGAGCCGACTCCACCC | + |
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Preference number: 6 (lower is better) Translates to: AKVAVCSVPYGG*GGGYGPEPTPP Trigger: GGGTGGAGTCGGCTCAGGGCCATATCCTCCGCCGCAGCCCCCATACGGAACTGAGCAGACCGCAACCTTTGC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| CDS CCA 72 bp | ACTGACCCACAGAATAATACTGAGAAGGCCCATAGCTaGGGTTGCAGGCGGCTGGGGCGTACCCCGAGGGAG | + |
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Preference number: 6 (lower is better) Translates to: TDPQNNTEKAHS*GCRRLGRTPRE Trigger: CTCCCTCGGGGTACGCCCCAGCCGCCTGCAACCCCAGCTATGGGCCTTCTCAGTATTATTCTGTGGGTCAGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| CDS CAA 72 bp | TGTCCTCAGAGAGGAGGTCGTAGGCTGATGCAAAGGTaGCGGTCTGCTCAGTTCCGTATGGGGGCTGCGGCG | + |
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Preference number: 6 (lower is better) Translates to: CPQRGGRRLMQR*RSAQFRMGAAA Trigger: CGCCGCAGCCCCCATACGGAACTGAGCAGACCGCAACCTTTGCATCAGCCTACGACCTCCTCTCTGAGGACA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| CDS TCA 72 bp | CCAGTCGAAGGTCCGGGGAGTGAGAGTGCTGGGTTCTaGCGAGCAAGGCGATTCCTTGTCCTCAGAGAGGAG | + |
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Preference number: 6 (lower is better) Translates to: PVEGPGSESAGF*RARRFLVLREE Trigger: CTCCTCTCTGAGGACAAGGAATCGCCTTGCTCGTCAGAACCCAGCACTCTCACTCCCCGGACCTTCGACTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| CDS CAA 90 bp | GCGATTCCTTGTCCTCAGAGAGGAGGTCGTAGGCTGATGCAAAGGTaGCGGTCTGCTCAGTTCCGTATGGGGGCTGCGGCGGAGGATATG | + |
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Preference number: 6 (lower is better) Translates to: AIPCPQRGGRRLMQR*RSAQFRMGAAAEDM Trigger: CATATCCTCCGCCGCAGCCCCCATACGGAACTGAGCAGACCGCAACCTTTGCATCAGCCTACGACCTCCTCTCTGAGGACAAGGAATCGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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| CDS TCA 72 bp | AGGCGATTCCTTGTCCTCAGAGAGGAGGTCGTAGGCTaGTGCAAAGGTTGCGGTCTGCTCAGTTCCGTATGG | + |
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Preference number: 6 (lower is better) Translates to: RRFLVLREEVVG*CKGCGLLSSVW Trigger: CCATACGGAACTGAGCAGACCGCAACCTTTGCATCAGCCTACGACCTCCTCTCTGAGGACAAGGAATCGCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019117.3 |
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