Pregenerated sensors for HOXA9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038227Ensembl transcript IDs: ENSMUST00000048680.8, ENSMUST00000114425.3
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CGCAGGCCTAAGAGCCAGCCTGAGCACGGACTGCCAGTGGGGAGATaGGGCCTGGGATTTAGAGCCCCTTTGTGCGGGTGGAGGCTGGGT | + |
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Preference number: 1 (lower is better) Translates to: RRPKSQPEHGLPVGR*GLGFRAPLCGWRLG Trigger: ACCCAGCCTCCACCCGCACAAAGGGGCTCTAAATCCCAGGCCTCATCTCCCCACTGGCAGTCCGTGCTCAGGCTGGCTCTTAGGCCTGCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048680.8 |
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| 3UTR CCA 90 bp | ATCAAAGCCGCAGGCCTAAGAGCCAGCCTGAGCACGGACTGCCAGTaGGGAGATGAGGCCTGGGATTTAGAGCCCCTTTGTGCGGGTGGA | + |
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Preference number: 1 (lower is better) Translates to: IKAAGLRASLSTDCQ*GDEAWDLEPLCAGG Trigger: TCCACCCGCACAAAGGGGCTCTAAATCCCAGGCCTCATCTCCCCACTGGCAGTCCGTGCTCAGGCTGGCTCTTAGGCCTGCGGCTTTGAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048680.8 |
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| 3UTR TCA 90 bp | GAACGTAAAGATGAAGAAGCCCACATTTCAAAAGTAGATAAATCATaGATCTATGCATCCCGGAGAACTATCTCTCTTTTCTTTCCAAAT | + |
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Preference number: 1 (lower is better) Translates to: ERKDEEAHISKVDKS*IYASRRTISLFFPN Trigger: ATTTGGAAAGAAAAGAGAGATAGTTCTCCGGGATGCATAGATTCATGATTTATCTACTTTTGAAATGTGGGCTTCTTCATCTTTACGTTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048680.8 |
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| 3UTR-3UTR CCA 90 bp | AAGCGTAAACCCATAGGTAGCAACCCTCTGCACACACGTATAGCTCCGAATTTCTGTGCGGGTGGAGGCTaGGTTTGGGGGAGAGGAGAC | + |
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Preference number: 2 (lower is better) Translates to: KRKPIGSNPLHTRIAPNFCAGGG*VWGRGD Trigger: GTCTCCTCTCCCCCAAACCCAGCCTCCACCCGCACA...GAAATTCGGAGCTATACGTGTGTGCAGAGGGTTGCTACCTATGGGTTTACGCTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048680.8 |
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| 3UTR-3UTR GCA 90 bp | AAGCGTAAACCCATAGGTAGCAACCCTCTGCACACACGTATAGCTCCGAATTTCTTTAGAGCCCCTTTGTaGGGGTGGAGGCTGGGTTTG | + |
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Preference number: 2 (lower is better) Translates to: KRKPIGSNPLHTRIAPNFFRAPL*GWRLGL Trigger: CAAACCCAGCCTCCACCCGCACAAAGGGGCTCTAAA...GAAATTCGGAGCTATACGTGTGTGCAGAGGGTTGCTACCTATGGGTTTACGCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048680.8 |
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| 3UTR-3UTR CCA 90 bp | AGCTCCGAATTTCCTCACTTCTCCTCTGGTGCAAAAACAATATTCAAGCTTTCTGCCCCTTTGTGCGGGTaGAGGCTGGGTTTGGGGGAG | + |
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Preference number: 2 (lower is better) Translates to: SSEFPHFSSGAKTIFKLSAPLCG*RLGLGE Trigger: CTCCCCCAAACCCAGCCTCCACCCGCACAAAGGGGC...AGAAAGCTTGAATATTGTTTTTGCACCAGAGGAGAAGTGAGGAAATTCGGAGCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000048680.8 |
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| 3UTR-3UTR CCA 90 bp | ATGTTCAATCCGATGGGAACCCCAAATTCACCAAGGATACAAATCTACAGTAGCAGCACGGACTGCCAGTaGGGAGATGAGGCCTGGGAT | + |
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Preference number: 2 (lower is better) Translates to: MFNPMGTPNSPRIQIYSSSTDCQ*GDEAWD Trigger: ATCCCAGGCCTCATCTCCCCACTGGCAGTCCGTGCT...GCTACTGTAGATTTGTATCCTTGGTGAATTTGGGGTTCCCATCGGATTGAACAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048680.8 |
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| 3UTR-3UTR GCA 90 bp | TTTTGGCAGAATGATCTGCCACACGAAGAGCAAATTAAATTAGCTACAGAGACTAGCCTGAGCACGGACTaGCAGTGGGGAGATGAGGCC | + |
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Preference number: 2 (lower is better) Translates to: FWQNDLPHEEQIKLATETSLSTD*QWGDEA Trigger: GGCCTCATCTCCCCACTGGCAGTCCGTGCTCAGGCT...AGTCTCTGTAGCTAATTTAATTTGCTCTTCGTGTGGCAGATCATTCTGCCAAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048680.8 |
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| 3UTR-3UTR TCA 90 bp | AAGCGTAAACCCATAGGTAGCAACCCTCTGCACACACGTATAGCTCCGAATTTCAAAGTAGATAAATCATaGATCTATGCATCCCGGAGA | + |
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Preference number: 2 (lower is better) Translates to: KRKPIGSNPLHTRIAPNFKVDKS*IYASRR Trigger: TCTCCGGGATGCATAGATTCATGATTTATCTACTTT...GAAATTCGGAGCTATACGTGTGTGCAGAGGGTTGCTACCTATGGGTTTACGCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048680.8 |
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| 3UTR-3UTR CCA 90 bp | TATCTCGACACAACAATTTGGTCAGTAGGCCTTGAGGTAACTATTGCAAAATATAGTGTTCAAGTATTTTaGCAGAATGATCTGCCACAC | + |
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Preference number: 2 (lower is better) Translates to: YLDTTIWSVGLEVTIAKYSVQVF*QNDLPH Trigger: GTGTGGCAGATCATTCTGCCAAAATACTTGAACACT...ATATTTTGCAATAGTTACCTCAAGGCCTACTGACCAAATTGTTGTGTCGAGATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048680.8 |
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| 3UTR CCA 72 bp | AGCCTGAGCACGGACTGCCAGTGGGGAGATGAGGCCTaGGATTTAGAGCCCCTTTGTGCGGGTGGAGGCTGG | + |
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Preference number: 3 (lower is better) Translates to: SLSTDCQWGDEA*DLEPLCAGGGW Trigger: CCAGCCTCCACCCGCACAAAGGGGCTCTAAATCCCAGGCCTCATCTCCCCACTGGCAGTCCGTGCTCAGGCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048680.8 |
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| 3UTR TCA 72 bp | AAGAGCCAGCCTGAGCACGGACTGCCAGTGGGGAGATaGGGCCTGGGATTTAGAGCCCCTTTGTGCGGGTGG | + |
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Preference number: 3 (lower is better) Translates to: KSQPEHGLPVGR*GLGFRAPLCGW Trigger: CCACCCGCACAAAGGGGCTCTAAATCCCAGGCCTCATCTCCCCACTGGCAGTCCGTGCTCAGGCTGGCTCTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048680.8 |
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| 3UTR CCA 72 bp | CATGTAGCCAGTTGGCAGCCGGGTTATTGGGATCGATaGGGGGCTTGTCTCCGCCGCTCTCATTCTCGGCAT | + |
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Preference number: 3 (lower is better) Translates to: HVASWQPGYWDR*GACLRRSHSRH Trigger: ATGCCGAGAATGAGAGCGGCGGAGACAAGCCCCCCATCGATCCCAATAACCCGGCTGCCAACTGGCTACATG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114425.3 |
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| 3UTR-3UTR CAA 90 bp | CTATTGCAAAATATACAGTGTATGTTCAATCCGATGGGAACCCCAAATTCACCACAACCTGAGTTCAAATaGAATTCTAGCTTCCACAAT | + |
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Preference number: 3 (lower is better) Translates to: LLQNIQCMFNPMGTPNSPQPEFK*NSSFHN Trigger: ATTGTGGAAGCTAGAATTCAATTTGAACTCAGGTTG...TGGTGAATTTGGGGTTCCCATCGGATTGAACATACACTGTATATTTTGCAATAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048680.8 |
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| 3UTR CCA 72 bp | AACTATTGCAAAATATACAGTGTATGTTCAATCCGATaGGAACCCCAAATTCACCAAGGATACAAATCTACA | + |
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Preference number: 3 (lower is better) Translates to: NYCKIYSVCSIR*EPQIHQGYKST Trigger: TGTAGATTTGTATCCTTGGTGAATTTGGGGTTCCCATCGGATTGAACATACACTGTATATTTTGCAATAGTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048680.8 |
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| CDS-3UTR TCA 90 bp | CTCATTCTCGGCATTGTTTTCGGAGAAGGCGCCTTCGCTGGGTTGTTTTTCTCTGCCTGCCTTGGGGGTTaGCCCAGGGTCCCTGGAGCG | + |
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Preference number: 4 (lower is better) Translates to: LILGIVFGEGAFAGLFFSACLGG*PRVPGA Trigger: CGCTCCAGGGACCCTGGGTCAACCCCCAAGGCAGGC...AGAGAAAAACAACCCAGCGAAGGCGCCTTCTCCGAAAACAATGCCGAGAATGAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000114425.3 |
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| CDS-3UTR GCA 90 bp | CTCATTCTCGGCATTGTTTTCGGAGAAGGCGCCTTCGCTGGGTTGTTTTTCTCTTTGGCGCCCGCCGCGTaGACTGGGTTCCACGAGGCA | + |
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Preference number: 4 (lower is better) Translates to: LILGIVFGEGAFAGLFFSLAPAA*TGFHEA Trigger: TGCCTCGTGGAACCCAGTGCACGCGGCGGGCGCCAA...AGAGAAAAACAACCCAGCGAAGGCGCCTTCTCCGAAAACAATGCCGAGAATGAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114425.3 |
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| CDS-3UTR CCA 90 bp | CTCATTCTCGGCATTGTTTTCGGAGAAGGCGCCTTCGCTGGGTTGTTTTTCTCTAGCTGCCGCCTGCCTTaGGGGTTGACCCAGGGTCCC | + |
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Preference number: 4 (lower is better) Translates to: LILGIVFGEGAFAGLFFSSCRLP*GLTQGP Trigger: GGGACCCTGGGTCAACCCCCAAGGCAGGCGGCAGCT...AGAGAAAAACAACCCAGCGAAGGCGCCTTCTCCGAAAACAATGCCGAGAATGAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000114425.3 |
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| CDS-3UTR GCA 90 bp | CTCATTCTCGGCATTGTTTTCGGAGAAGGCGCCTTCGCTGGGTTGTTTTTCTCTGTGTTCGGCCAGAGCTaGCGCCTGCCTTGGGGGTTG | + |
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Preference number: 4 (lower is better) Translates to: LILGIVFGEGAFAGLFFSVFGQS*RLPWGL Trigger: CAACCCCCAAGGCAGGCGGCAGCTCTGGCCGAACAC...AGAGAAAAACAACCCAGCGAAGGCGCCTTCTCCGAAAACAATGCCGAGAATGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000114425.3 |
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| CDS-3UTR CCA 90 bp | CTCATTCTCGGCATTGTTTTCGGAGAAGGCGCCTTCGCTGGGTTGTTTTTCTCTGCCCGCCGCGTGCACTaGGTTCCACGAGGCACCAAA | + |
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Preference number: 4 (lower is better) Translates to: LILGIVFGEGAFAGLFFSARRVH*VPRGTK Trigger: TTTGGTGCCTCGTGGAACCCAGTGCACGCGGCGGGC...AGAGAAAAACAACCCAGCGAAGGCGCCTTCTCCGAAAACAATGCCGAGAATGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114425.3 |
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| CDS-3UTR CCA 90 bp | ATGTTCAATCCGATGGGAACCCCAAATTCACCAAGGATACAAATCTACAGTAGCCAGCAGGCACCGCATTaGCGCCCGCCGCGTGCACTG | + |
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Preference number: 4 (lower is better) Translates to: MFNPMGTPNSPRIQIYSSQQAPH*RPPRAL Trigger: CAGTGCACGCGGCGGGCGCCAATGCGGTGCCTGCTG...GCTACTGTAGATTTGTATCCTTGGTGAATTTGGGGTTCCCATCGGATTGAACAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048680.8 |
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| CDS-3UTR CCA 90 bp | TGCCCTCCCTTGTGTGTGTGTGTGCCTTCTATAAAATGGAAAGCTTACAATACCAGAGCGCACCGGGCGTaGGTTCCAGCCAGGAGCGCA | + |
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Preference number: 4 (lower is better) Translates to: CPPLCVCVPSIKWKAYNTRAHRA*VPARSA Trigger: TGCGCTCCTGGCTGGAACCCACGCCCGGTGCGCTCT...GGTATTGTAAGCTTTCCATTTTATAGAAGGCACACACACACACAAGGGAGGGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048680.8 |
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| CDS-3UTR CCA 90 bp | AAGCGTAAACCCATAGGTAGCAACCCTCTGCACACACGTATAGCTCCGAATTTCTGCCATAAGGCCGGCTaGAGGGTAAGCCCGCGAAGG | + |
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Preference number: 4 (lower is better) Translates to: KRKPIGSNPLHTRIAPNFCHKAG*RVSPRR Trigger: CCTTCGCGGGCTTACCCTCCAGCCGGCCTTATGGCA...GAAATTCGGAGCTATACGTGTGTGCAGAGGGTTGCTACCTATGGGTTTACGCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048680.8 |
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| CDS-3UTR CCA 90 bp | CAGTCTAGCTACACAGAAGACTACAGAGCTATACATTATGCCACAGCTTCTCTCGCCCGCCGCGTGCACTaGGTTCCACGAGGCACCAAA | + |
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Preference number: 4 (lower is better) Translates to: QSSYTEDYRAIHYATASLARRVH*VPRGTK Trigger: TTTGGTGCCTCGTGGAACCCAGTGCACGCGGCGGGC...GAGAGAAGCTGTGGCATAATGTATAGCTCTGTAGTCTTCTGTGTAGCTAGACTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048680.8 |
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| CDS-3UTR TCA 90 bp | TTGGCAAAAGTTAAATATCTCGACACAACAATTTGGTCAGTAGGCCTTGAGGTAGCCTGCCTTGGGGGTTaGCCCAGGGTCCCTGGAGCG | + |
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Preference number: 4 (lower is better) Translates to: LAKVKYLDTTIWSVGLEVACLGG*PRVPGA Trigger: CGCTCCAGGGACCCTGGGTCAACCCCCAAGGCAGGC...TACCTCAAGGCCTACTGACCAAATTGTTGTGTCGAGATATTTAACTTTTGCCAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048680.8 |
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| CDS-3UTR CCA 90 bp | CATCAAAGCCGCAGGCCTAAGAGCCAGCCTGAGCACGGACTGCCAGTGGGGAGATTTTTCTCTATCAACTaGAGGAGAACCACAAGCATA | + |
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Preference number: 4 (lower is better) Translates to: HQSRRPKSQPEHGLPVGRFFSIN*RRTTSI Trigger: TATGCTTGTGGTTCTCCTCCAGTTGATAGAGAAAAA...TCTCCCCACTGGCAGTCCGTGCTCAGGCTGGCTCTTAGGCCTGCGGCTTTGATG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048680.8 |
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| CDS-3UTR CCA 90 bp | CTATTGCAAAATATACAGTGTATGTTCAATCCGATGGGAACCCCAAATTCACCAAGCTGCCGCCTGCCTTaGGGGTTGACCCAGGGTCCC | + |
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Preference number: 4 (lower is better) Translates to: LLQNIQCMFNPMGTPNSPSCRLP*GLTQGP Trigger: GGGACCCTGGGTCAACCCCCAAGGCAGGCGGCAGCT...TGGTGAATTTGGGGTTCCCATCGGATTGAACATACACTGTATATTTTGCAATAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000048680.8 |
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| CDS-3UTR GCA 90 bp | TTGGCAAAAGTTAAATATCTCGACACAACAATTTGGTCAGTAGGCCTTGAGGTAGTGTTCGGCCAGAGCTaGCGCCTGCCTTGGGGGTTG | + |
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Preference number: 4 (lower is better) Translates to: LAKVKYLDTTIWSVGLEVVFGQS*RLPWGL Trigger: CAACCCCCAAGGCAGGCGGCAGCTCTGGCCGAACAC...TACCTCAAGGCCTACTGACCAAATTGTTGTGTCGAGATATTTAACTTTTGCCAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048680.8 |
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| CDS-3UTR GCA 90 bp | ATATACATTGGACAAAATTGGAGTCTAGAACGTAAAGATGAAGAAGCCCACATTTTGGCGCCCGCCGCGTaGACTGGGTTCCACGAGGCA | + |
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Preference number: 4 (lower is better) Translates to: IYIGQNWSLERKDEEAHILAPAA*TGFHEA Trigger: TGCCTCGTGGAACCCAGTGCACGCGGCGGGCGCCAA...AATGTGGGCTTCTTCATCTTTACGTTCTAGACTCCAATTTTGTCCAATGTATAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048680.8 |
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| CDS-3UTR CCA 90 bp | ATGTTCAATCCGATGGGAACCCCAAATTCACCAAGGATACAAATCTACAGTAGCGACAGTCACCCCTTCTaGCCGAGAGCGGTTCAGGTT | + |
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Preference number: 4 (lower is better) Translates to: MFNPMGTPNSPRIQIYSSDSHPF*PRAVQV Trigger: AACCTGAACCGCTCTCGGCCAGAAGGGGTGACTGTC...GCTACTGTAGATTTGTATCCTTGGTGAATTTGGGGTTCCCATCGGATTGAACAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048680.8 |
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| CDS-3UTR CCA 90 bp | TTTTGGCAGAATGATCTGCCACACGAAGAGCAAATTAAATTAGCTACAGAGACTGGTTATTGGGATCGATaGGGGGCTTGTCTCCGCCGC | + |
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Preference number: 4 (lower is better) Translates to: FWQNDLPHEEQIKLATETGYWDR*GACLRR Trigger: GCGGCGGAGACAAGCCCCCCATCGATCCCAATAACC...AGTCTCTGTAGCTAATTTAATTTGCTCTTCGTGTGGCAGATCATTCTGCCAAAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048680.8 |
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| CDS-3UTR CCA 90 bp | AGCTCCGAATTTCCTCACTTCTCCTCTGGTGCAAAAACAATATTCAAGCTTTCTTGTGAGTGTCAAGCGTaGGACAGTCACCCCTTCTGG | + |
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Preference number: 4 (lower is better) Translates to: SSEFPHFSSGAKTIFKLSCECQA*DSHPFW Trigger: CCAGAAGGGGTGACTGTCCCACGCTTGACACTCACA...AGAAAGCTTGAATATTGTTTTTGCACCAGAGGAGAAGTGAGGAAATTCGGAGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048680.8 |
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| CDS-3UTR TCA 90 bp | ACTATTGCAAAATATACAGTGTATGTTCAATCCGATGGGAACCCCAAATTCACCGTCAGGGACAAAGTGTaGGTGTCAAGCGTGGGACAG | + |
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Preference number: 4 (lower is better) Translates to: TIAKYTVYVQSDGNPKFTVRDKV*VSSVGQ Trigger: CTGTCCCACGCTTGACACTCACACTTTGTCCCTGAC...GGTGAATTTGGGGTTCCCATCGGATTGAACATACACTGTATATTTTGCAATAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048680.8 |
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| CDS-3UTR CCA 90 bp | TTGGCAAAAGTTAAATATCTCGACACAACAATTTGGTCAGTAGGCCTTGAGGTAATCGCTTCTTCCGAGTaGAGCGAGCATGTAGCCAGT | + |
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Preference number: 4 (lower is better) Translates to: LAKVKYLDTTIWSVGLEVIASSE*SEHVAS Trigger: ACTGGCTACATGCTCGCTCCACTCGGAAGAAGCGAT...TACCTCAAGGCCTACTGACCAAATTGTTGTGTCGAGATATTTAACTTTTGCCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048680.8 |
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| CDS-3UTR CCA 90 bp | AGCTCCGAATTTCCTCACTTCTCCTCTGGTGCAAAAACAATATTCAAGCTTTCTAGAAGGCGCCTTCGCTaGGTTGTTTTTCTCTATCAA | + |
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Preference number: 4 (lower is better) Translates to: SSEFPHFSSGAKTIFKLSRRRLR*VVFLYQ Trigger: TTGATAGAGAAAAACAACCCAGCGAAGGCGCCTTCT...AGAAAGCTTGAATATTGTTTTTGCACCAGAGGAGAAGTGAGGAAATTCGGAGCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000048680.8 |
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| CDS CCA 90 bp | AAGGCCGGCTGGAGGGTAAGCCCGCGAAGGAGAGCGCACCGGGCGTaGGTTCCAGCCAGGAGCGCATATACCTGCCGTCCGGCGCCGCCG | + |
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Preference number: 5 (lower is better) Translates to: KAGWRVSPRRRAHRA*VPARSAYTCRPAPP Trigger: CGGCGGCGCCGGACGGCAGGTATATGCGCTCCTGGCTGGAACCCACGCCCGGTGCGCTCTCCTTCGCGGGCTTACCCTCCAGCCGGCCTT 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048680.8 |
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| CDS CCA 90 bp | TTCGGCCAGAGCTGCCGCCTGCCTTGGGGGTTGACCCAGGGTCCCTaGAGCGTAGCGTCCCGCACCCAGCTCATCAGCAGCGTCGGCGCC | + |
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Preference number: 5 (lower is better) Translates to: FGQSCRLPWGLTQGP*SVASRTQLISSVGA Trigger: GGCGCCGACGCTGCTGATGAGCTGGGTGCGGGACGCTACGCTCCAGGGACCCTGGGTCAACCCCCAAGGCAGGCGGCAGCTCTGGCCGAA 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000048680.8 ENSMUST00000114425.3 |
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| CDS CCA 90 bp | GCAAGGACTGAAGTCGGGGTGTTCGGCCAGAGCTGCCGCCTGCCTTaGGGGTTGACCCAGGGTCCCTGGAGCGTAGCGTCCCGCACCCAG | + |
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Preference number: 5 (lower is better) Translates to: ARTEVGVFGQSCRLP*GLTQGPWSVASRTQ Trigger: CTGGGTGCGGGACGCTACGCTCCAGGGACCCTGGGTCAACCCCCAAGGCAGGCGGCAGCTCTGGCCGAACACCCCGACTTCAGTCCTTGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048680.8 ENSMUST00000114425.3 |
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| CDS GCA 90 bp | GGACTGGAAGCTGCAAGGACTGAAGTCGGGGTGTTCGGCCAGAGCTaGCGCCTGCCTTGGGGGTTGACCCAGGGTCCCTGGAGCGTAGCG | + |
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Preference number: 5 (lower is better) Translates to: GLEAARTEVGVFGQS*RLPWGLTQGPWSVA Trigger: CGCTACGCTCCAGGGACCCTGGGTCAACCCCCAAGGCAGGCGGCAGCTCTGGCCGAACACCCCGACTTCAGTCCTTGCAGCTTCCAGTCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000048680.8 ENSMUST00000114425.3 |
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| CDS-3UTR CAA 90 bp | CATCAAAGCCGCAGGCCTAAGAGCCAGCCTGAGCACGGACTGCCAGTGGGGAGACGCCTGCCTTGGGGGTaGACCCAGGGTCCCTGGAGC | + |
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Preference number: 5 (lower is better) Translates to: HQSRRPKSQPEHGLPVGRRLPWG*TQGPWS Trigger: GCTCCAGGGACCCTGGGTCAACCCCCAAGGCAGGCG...TCTCCCCACTGGCAGTCCGTGCTCAGGCTGGCTCTTAGGCCTGCGGCTTTGATG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048680.8 |
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| CDS CCA 90 bp | CGTAGGGGTGGTGGTGGTGATGATACACTGCAGCAGGCACCGCATTaGCGCCCGCCGCGTGCACTGGGTTCCACGAGGCACCAAACACCG | + |
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Preference number: 5 (lower is better) Translates to: RRGGGGDDTLQQAPH*RPPRALGSTRHQTP Trigger: CGGTGTTTGGTGCCTCGTGGAACCCAGTGCACGCGGCGGGCGCCAATGCGGTGCCTGCTGCAGTGTATCATCACCACCACCACCCCTACG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048680.8 ENSMUST00000114425.3 |
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| CDS CCA 90 bp | GCGTGCACTGGGTTCCACGAGGCACCAAACACCGCCGCCTTGGACTaGAAGCTGCAAGGACTGAAGTCGGGGTGTTCGGCCAGAGCTGCC | + |
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Preference number: 5 (lower is better) Translates to: ACTGFHEAPNTAALD*KLQGLKSGCSARAA Trigger: GGCAGCTCTGGCCGAACACCCCGACTTCAGTCCTTGCAGCTTCCAGTCCAAGGCGGCGGTGTTTGGTGCCTCGTGGAACCCAGTGCACGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048680.8 ENSMUST00000114425.3 |
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| CDS CCA 90 bp | ATGATACACTGCAGCAGGCACCGCATTGGCGCCCGCCGCGTGCACTaGGTTCCACGAGGCACCAAACACCGCCGCCTTGGACTGGAAGCT | + |
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Preference number: 5 (lower is better) Translates to: MIHCSRHRIGARRVH*VPRGTKHRRLGLEA Trigger: AGCTTCCAGTCCAAGGCGGCGGTGTTTGGTGCCTCGTGGAACCCAGTGCACGCGGCGGGCGCCAATGCGGTGCCTGCTGCAGTGTATCAT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048680.8 ENSMUST00000114425.3 |
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| CDS-3UTR CAA 90 bp | CTCATTCTCGGCATTGTTTTCGGAGAAGGCGCCTTCGCTGGGTTGTTTTTCTCTGCAGCAGGCACCGCATaGGCGCCCGCCGCGTGCACT | + |
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Preference number: 5 (lower is better) Translates to: LILGIVFGEGAFAGLFFSAAGTA*APAACT Trigger: AGTGCACGCGGCGGGCGCCAATGCGGTGCCTGCTGC...AGAGAAAAACAACCCAGCGAAGGCGCCTTCTCCGAAAACAATGCCGAGAATGAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114425.3 |
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| CDS-3UTR CAA 90 bp | CTCATTCTCGGCATTGTTTTCGGAGAAGGCGCCTTCGCTGGGTTGTTTTTCTCTCGCCTGCCTTGGGGGTaGACCCAGGGTCCCTGGAGC | + |
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Preference number: 5 (lower is better) Translates to: LILGIVFGEGAFAGLFFSRLPWG*TQGPWS Trigger: GCTCCAGGGACCCTGGGTCAACCCCCAAGGCAGGCG...AGAGAAAAACAACCCAGCGAAGGCGCCTTCTCCGAAAACAATGCCGAGAATGAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000114425.3 |
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| CDS-3UTR CAA 90 bp | CCCTCCCTTGTGTGTGTGTGTGCCTTCTATAAAATGGAAAGCTTACAATACCTCTGCCTTTCGGTGAGGTaGAGCAGCCGGGCCACCTCG | + |
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Preference number: 5 (lower is better) Translates to: PSLVCVCAFYKMESLQYLCLSVR*SSRATS Trigger: CGAGGTGGCCCGGCTGCTCAACCTCACCGAAAGGCA...GAGGTATTGTAAGCTTTCCATTTTATAGAAGGCACACACACACACAAGGGAGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048680.8 |
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| CDS-3UTR CAA 90 bp | TTCCTCACTTCTCCTCTGGTGCAAAAACAATATTCAAGCTTTCTGATTATGAATGCAGCAGGCACCGCATaGGCGCCCGCCGCGTGCACT | + |
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Preference number: 5 (lower is better) Translates to: FLTSPLVQKQYSSFLIMNAAGTA*APAACT Trigger: AGTGCACGCGGCGGGCGCCAATGCGGTGCCTGCTGC...ATTCATAATCAGAAAGCTTGAATATTGTTTTTGCACCAGAGGAGAAGTGAGGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048680.8 |
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| CDS-3UTR CAA 90 bp | AAGCGTAAACCCATAGGTAGCAACCCTCTGCACACACGTATAGCTCCGAATTTCCTCTCATTCTCGGCATaGTTTTCGGAGAAGGCGCCT | + |
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Preference number: 5 (lower is better) Translates to: KRKPIGSNPLHTRIAPNFLSFSA*FSEKAP Trigger: AGGCGCCTTCTCCGAAAACAATGCCGAGAATGAGAG...GAAATTCGGAGCTATACGTGTGTGCAGAGGGTTGCTACCTATGGGTTTACGCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048680.8 |
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| CDS CCA 90 bp | GTTTTCGGAGAAGGCGCCTTCGCTGGGTTGTTTTTCTCTATCAACTaGAGGAGAACCACAAGCATAGTCAGTCAGGGACAAAGTGTGAGT | + |
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Preference number: 5 (lower is better) Translates to: VFGEGAFAGLFFSIN*RRTTSIVSQGQSVS Trigger: ACTCACACTTTGTCCCTGACTGACTATGCTTGTGGTTCTCCTCCAGTTGATAGAGAAAAACAACCCAGCGAAGGCGCCTTCTCCGAAAAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048680.8 |
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| CDS-3UTR CAA 90 bp | ATGTTCAATCCGATGGGAACCCCAAATTCACCAAGGATACAAATCTACAGTAGCGGCGCCTTCGCTGGGTaGTTTTTCTCTATCAACTGG | + |
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Preference number: 5 (lower is better) Translates to: MFNPMGTPNSPRIQIYSSGAFAG*FFSINW Trigger: CCAGTTGATAGAGAAAAACAACCCAGCGAAGGCGCC...GCTACTGTAGATTTGTATCCTTGGTGAATTTGGGGTTCCCATCGGATTGAACAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048680.8 |
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| CDS GCA 72 bp | TACACTGCAGCAGGCACCGCATTGGCGCCCGCCGCGTaGACTGGGTTCCACGAGGCACCAAACACCGCCGCC | + |
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Preference number: 6 (lower is better) Translates to: YTAAGTALAPAA*TGFHEAPNTAA Trigger: GGCGGCGGTGTTTGGTGCCTCGTGGAACCCAGTGCACGCGGCGGGCGCCAATGCGGTGCCTGCTGCAGTGTA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048680.8 ENSMUST00000114425.3 |
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| CDS CCA 72 bp | GAAGTCGGGGTGTTCGGCCAGAGCTGCCGCCTGCCTTaGGGGTTGACCCAGGGTCCCTGGAGCGTAGCGTCC | + |
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Preference number: 6 (lower is better) Translates to: EVGVFGQSCRLP*GLTQGPWSVAS Trigger: GGACGCTACGCTCCAGGGACCCTGGGTCAACCCCCAAGGCAGGCGGCAGCTCTGGCCGAACACCCCGACTTC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048680.8 ENSMUST00000114425.3 |
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| CDS CCA 72 bp | TGCAGCAGGCACCGCATTGGCGCCCGCCGCGTGCACTaGGTTCCACGAGGCACCAAACACCGCCGCCTTGGA | + |
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Preference number: 6 (lower is better) Translates to: CSRHRIGARRVH*VPRGTKHRRLG Trigger: TCCAAGGCGGCGGTGTTTGGTGCCTCGTGGAACCCAGTGCACGCGGCGGGCGCCAATGCGGTGCCTGCTGCA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048680.8 ENSMUST00000114425.3 |
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| CDS CCA 72 bp | GGTGGTGGTGATGATACACTGCAGCAGGCACCGCATTaGCGCCCGCCGCGTGCACTGGGTTCCACGAGGCAC | + |
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Preference number: 6 (lower is better) Translates to: GGGDDTLQQAPH*RPPRALGSTRH Trigger: GTGCCTCGTGGAACCCAGTGCACGCGGCGGGCGCCAATGCGGTGCCTGCTGCAGTGTATCATCACCACCACC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048680.8 ENSMUST00000114425.3 |
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| CDS CCA 72 bp | GGGTTCCACGAGGCACCAAACACCGCCGCCTTGGACTaGAAGCTGCAAGGACTGAAGTCGGGGTGTTCGGCC | + |
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Preference number: 6 (lower is better) Translates to: GFHEAPNTAALD*KLQGLKSGCSA Trigger: GGCCGAACACCCCGACTTCAGTCCTTGCAGCTTCCAGTCCAAGGCGGCGGTGTTTGGTGCCTCGTGGAACCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048680.8 ENSMUST00000114425.3 |
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| CDS CCA 72 bp | CATAGTCAGTCAGGGACAAAGTGTGAGTGTCAAGCGTaGGACAGTCACCCCTTCTGGCCGAGAGCGGTTCAG | + |
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Preference number: 6 (lower is better) Translates to: HSQSGTKCECQA*DSHPFWPRAVQ Trigger: CTGAACCGCTCTCGGCCAGAAGGGGTGACTGTCCCACGCTTGACACTCACACTTTGTCCCTGACTGACTATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048680.8 |
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| CDS CAA 72 bp | CTCGGCATTGTTTTCGGAGAAGGCGCCTTCGCTGGGTaGTTTTTCTCTATCAACTGGAGGAGAACCACAAGC | + |
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Preference number: 6 (lower is better) Translates to: LGIVFGEGAFAG*FFSINWRRTTS Trigger: GCTTGTGGTTCTCCTCCAGTTGATAGAGAAAAACAACCCAGCGAAGGCGCCTTCTCCGAAAACAATGCCGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048680.8 |
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| CDS CCA 72 bp | CATTCTCGGCATTGTTTTCGGAGAAGGCGCCTTCGCTaGGTTGTTTTTCTCTATCAACTGGAGGAGAACCAC | + |
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Preference number: 6 (lower is better) Translates to: HSRHCFRRRRLR*VVFLYQLEENH Trigger: GTGGTTCTCCTCCAGTTGATAGAGAAAAACAACCCAGCGAAGGCGCCTTCTCCGAAAACAATGCCGAGAATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048680.8 |
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