Pregenerated sensors for HOXA7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038236Ensembl transcript IDs: ENSMUST00000048715.9, ENSMUST00000134367.4, ENSMUST00000140316.2, ENSMUST00000150041.4, ENSMUST00000153280.2
Found 91 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTTGTCAGCAGCTGTGGAAACGGAGGGCACCGCGTCTTCCGGGGCTaGAGTGGGAGCCTGGCTCTCATCTTTATGCTCTTTCTTCCACTT | + |
|
Preference number: 1 (lower is better) Translates to: LVSSCGNGGHRVFRG*SGSLALIFMLFLPL Trigger: AAGTGGAAGAAAGAGCATAAAGATGAGAGCCAGGCTCCCACTGCAGCCCCGGAAGACGCGGTGCCCTCCGTTTCCACAGCTGCTGACAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000134367.4 ENSMUST00000153280.2 |
||
| 3UTR CCA 90 bp | GGTAGTATTTTGGCTGTGCCTGCGCACAACACTGGCCCAGGGTTGTaGGTATCTACTGGGTTCCTCAGAGGCAGAGAGGGTCCCCAAGGT | + |
|
Preference number: 1 (lower is better) Translates to: GSILAVPAHNTGPGL*VSTGFLRGREGPQG Trigger: ACCTTGGGGACCCTCTCTGCCTCTGAGGAACCCAGTAGATACCCACAACCCTGGGCCAGTGTTGTGCGCAGGCACAGCCAAAATACTACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| 3UTR TCA 90 bp | GAGCTATTCCAGAGGATGGCAGCCAGCTCGGGAATGCTCCCCTCCTaGAGTAGGGTTAATGGCCCTGACCTTGTGTCAAAGCCAGAGAAA | + |
|
Preference number: 1 (lower is better) Translates to: ELFQRMAASSGMLPS*SRVNGPDLVSKPEK Trigger: TTTCTCTGGCTTTGACACAAGGTCAGGGCCATTAACCCTACTTCAGGAGGGGAGCATTCCCGAGCTGGCTGCCATCCTCTGGAATAGCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| 3UTR GCA 90 bp | AACAAAACCCAGAGCTATTCCAGAGGATGGCAGCCAGCTCGGGAATaGTCCCCTCCTGAAGTAGGGTTAATGGCCCTGACCTTGTGTCAA | + |
|
Preference number: 1 (lower is better) Translates to: NKTQSYSRGWQPARE*SPPEVGLMALTLCQ Trigger: TTGACACAAGGTCAGGGCCATTAACCCTACTTCAGGAGGGGAGCATTCCCGAGCTGGCTGCCATCCTCTGGAATAGCTCTGGGTTTTGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| 3UTR-3UTR CCA 90 bp | CATGAGGAGACAAGGGAGATGATGGCCCCGGTGGGTGCTGGACTTCCCCCACCCGGGTGGGGCAGGTGCTaGGTGTCTGCCAGTGTTGGG | + |
|
Preference number: 2 (lower is better) Translates to: HEETREMMAPVGAGLPPPGWGRC*VSASVG Trigger: CCCAACACTGGCAGACACCCAGCACCTGCCCCACCC...GGGTGGGGGAAGTCCAGCACCCACCGGGGCCATCATCTCCCTTGTCTCCTCATG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| 3UTR CAA 90 bp | TCCTCCTCTTCTTCCTCCTCTTCCTCCTCTTCCTCCTCGTCCGCCTaGTCAGCAGCTGTGGAAACGGAGGGCACCGCGTCTTCCGGGGCT | + |
|
Preference number: 2 (lower is better) Translates to: SSSSSSSSSSSSSSA*SAAVETEGTASSGA Trigger: AGCCCCGGAAGACGCGGTGCCCTCCGTTTCCACAGCTGCTGACAAGGCGGACGAGGAGGAAGAGGAGGAAGAGGAGGAAGAAGAGGAGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153280.2 |
||
| 3UTR-3UTR TCA 90 bp | GGACATGAGGAGACAAGGGAGATGATGGCCCCGGTGGGTGCTGGACTTCCCCCATCATTGCCTTGTCAGTaGAGCCTTGGTGACCCCAAA | + |
|
Preference number: 2 (lower is better) Translates to: GHEETREMMAPVGAGLPPSLPCQ*SLGDPK Trigger: TTTGGGGTCACCAAGGCTTCACTGACAAGGCAATGA...TGGGGGAAGTCCAGCACCCACCGGGGCCATCATCTCCCTTGTCTCCTCATGTCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| 3UTR CAA 90 bp | CTAGGTAGTATTTTGGCTGTGCCTGCGCACAACACTGGCCCAGGGTaGTGGGTATCTACTGGGTTCCTCAGAGGCAGAGAGGGTCCCCAA | + |
|
Preference number: 2 (lower is better) Translates to: LGSILAVPAHNTGPG*WVSTGFLRGREGPQ Trigger: TTGGGGACCCTCTCTGCCTCTGAGGAACCCAGTAGATACCCACAACCCTGGGCCAGTGTTGTGCGCAGGCACAGCCAAAATACTACCTAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| 3UTR-3UTR TCA 90 bp | GGACATGAGGAGACAAGGGAGATGATGGCCCCGGTGGGTGCTGGACTTCCCCCATCAGTGAAGCCTTGGTaGCCCCAAAGACTATCAGTT | + |
|
Preference number: 2 (lower is better) Translates to: GHEETREMMAPVGAGLPPSVKPW*PQRLSV Trigger: AACTGATAGTCTTTGGGGTCACCAAGGCTTCACTGA...TGGGGGAAGTCCAGCACCCACCGGGGCCATCATCTCCCTTGTCTCCTCATGTCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| 3UTR-3UTR GCA 90 bp | GGACATGAGGAGACAAGGGAGATGATGGCCCCGGTGGGTGCTGGACTTCCCCCAGTATTGATCATGGTTTaGAGGTATTGGCCGGGTGTG | + |
|
Preference number: 2 (lower is better) Translates to: GHEETREMMAPVGAGLPPVLIMV*RYWPGV Trigger: CACACCCGGCCAATACCTGCAAACCATGATCAATAC...TGGGGGAAGTCCAGCACCCACCGGGGCCATCATCTCCCTTGTCTCCTCATGTCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| 3UTR CAA 90 bp | GTAGTTTGGGAGTGCCTCTCAAAGAGGCCTGTGCTAGGTAGTATTTaGGCTGTGCCTGCGCACAACACTGGCCCAGGGTTGTGGGTATCT | + |
|
Preference number: 2 (lower is better) Translates to: VVWECLSKRPVLGSI*AVPAHNTGPGLWVS Trigger: AGATACCCACAACCCTGGGCCAGTGTTGTGCGCAGGCACAGCCAAAATACTACCTAGCACAGGCCTCTTTGAGAGGCACTCCCAAACTAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| 3UTR-3UTR GCA 90 bp | GAAGCCAATACCCTGGTCCCTGAACCTCATTGCCTTGTCAGTGAAGCCTTGGTGTATTTTGGCTGTGCCTaGGCACAACACTGGCCCAGG | + |
|
Preference number: 2 (lower is better) Translates to: EANTLVPEPHCLVSEALVYFGCA*AQHWPR Trigger: CCTGGGCCAGTGTTGTGCGCAGGCACAGCCAAAATA...CACCAAGGCTTCACTGACAAGGCAATGAGGTTCAGGGACCAGGGTATTGGCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| 3UTR-3UTR GCA 90 bp | GAAGCCAATACCCTGGTCCCTGAACCTCATTGCCTTGTCAGTGAAGCCTTGGTGCAGGTGCTGGGTGTCTaGCAGTGTTGGGACATGAAG | + |
|
Preference number: 2 (lower is better) Translates to: EANTLVPEPHCLVSEALVQVLGV*QCWDMK Trigger: CTTCATGTCCCAACACTGGCAGACACCCAGCACCTG...CACCAAGGCTTCACTGACAAGGCAATGAGGTTCAGGGACCAGGGTATTGGCTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| 3UTR CAA 90 bp | GCTCGGGAATGCTCCCCTCCTGAAGTAGGGTTAATGGCCCTGACCTaGTGTCAAAGCCAGAGAAAGAGGGATTCTAGGTTACAGCACTTG | + |
|
Preference number: 2 (lower is better) Translates to: ARECSPPEVGLMALT*CQSQRKRDSRLQHL Trigger: CAAGTGCTGTAACCTAGAATCCCTCTTTCTCTGGCTTTGACACAAGGTCAGGGCCATTAACCCTACTTCAGGAGGGGAGCATTCCCGAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| 3UTR-3UTR CCA 90 bp | GAAAAGTCAGGGTATACATATTTGACATGGCTGAACAGTAGGACACAAAAGCAAGGCCCCGGTGGGTGCTaGACTTCCCCCACCCACTAC | + |
|
Preference number: 2 (lower is better) Translates to: EKSGYTYLTWLNSRTQKQGPGGC*TSPTHY Trigger: GTAGTGGGTGGGGGAAGTCCAGCACCCACCGGGGCC...TTGCTTTTGTGTCCTACTGTTCAGCCATGTCAAATATGTATACCCTGACTTTTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| 3UTR-3UTR CCA 90 bp | AGCCAGCACACAATAGGTAGTTTAGGGCTAGTAGTAGGTAGTATTGATCATGGTGGTAGATGCGGAAACTaGCTTCGGCCGGGCCGTGAA | + |
|
Preference number: 2 (lower is better) Translates to: SQHTIGSLGLVVGSIDHGGRCGN*LRPGRE Trigger: TTCACGGCCCGGCCGAAGCCAGTTTCCGCATCTACC...ACCATGATCAATACTACCTACTACTAGCCCTAAACTACCTATTGTGTGCTGGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153280.2 |
||
| 3UTR-3UTR GCA 90 bp | CCACCCACTACAGAATTAGTTCAATACAACACACCATGCTACAAAGTCACCCCATTTCCAACTGTCCTGTaGAGCCAGGGTCCTGTGCCT | + |
|
Preference number: 2 (lower is better) Translates to: PPTTELVQYNTPCYKVTPFPTVL*SQGPVP Trigger: AGGCACAGGACCCTGGCTGCACAGGACAGTTGGAAA...TGGGGTGACTTTGTAGCATGGTGTGTTGTATTGAACTAATTCTGTAGTGGGTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| 3UTR-3UTR TCA 90 bp | TCTTTATTGTTACATAAAACACAGGTAGCTGGGCTGGGAAGCGTGCCTTCTCTGGCCAGTGTTGGGACATaGAGGAGGCTTCTTAGGAAT | + |
|
Preference number: 2 (lower is better) Translates to: SLLLHKTQVAGLGSVPSLASVGT*RRLLRN Trigger: ATTCCTAAGAAGCCTCCTTCATGTCCCAACACTGGC...CAGAGAAGGCACGCTTCCCAGCCCAGCTACCTGTGTTTTATGTAACAATAAAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| 3UTR-3UTR GCA 90 bp | AGCCAGCACACAATAGGTAGTTTAGGGCTAGTAGTAGGTAGTATTGATCATGGTTTTCCAACTGTCCTGTaGAGCCAGGGTCCTGTGCCT | + |
|
Preference number: 2 (lower is better) Translates to: SQHTIGSLGLVVGSIDHGFPTVL*SQGPVP Trigger: AGGCACAGGACCCTGGCTGCACAGGACAGTTGGAAA...ACCATGATCAATACTACCTACTACTAGCCCTAAACTACCTATTGTGTGCTGGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| 3UTR-3UTR TCA 90 bp | GGTAGTTTAGGGCTAGTAGTAGGTAGTATTGATCATGGTTTGCAGGTATTGGCCGCCAGTGTTGGGACATaGAGGAGGCTTCTTAGGAAT | + |
|
Preference number: 2 (lower is better) Translates to: GSLGLVVGSIDHGLQVLAASVGT*RRLLRN Trigger: ATTCCTAAGAAGCCTCCTTCATGTCCCAACACTGGC...GGCCAATACCTGCAAACCATGATCAATACTACCTACTACTAGCCCTAAACTACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| 3UTR-3UTR GCA 90 bp | TATTTGACATGGCTGAACAGTAGGACACAAAAGCAAGGGGGAGAGGACAGTGAGTGGCTCTCATCTTTATaGTCTTTCTTCCACTTCATG | + |
|
Preference number: 2 (lower is better) Translates to: YLTWLNSRTQKQGGEDSEWLSSL*SFFHFM Trigger: CATGAAGTGGAAGAAAGAGCATAAAGATGAGAGCCA...CTCACTGTCCTCTCCCCCTTGCTTTTGTGTCCTACTGTTCAGCCATGTCAAATA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000153280.2 |
||
| 3UTR-3UTR GCA 90 bp | GAAAAGTCAGGGTATACATATTTGACATGGCTGAACAGTAGGACACAAAAGCAACAATACAACACACCATaGTACAAAGTCACCCCATTA | + |
|
Preference number: 2 (lower is better) Translates to: EKSGYTYLTWLNSRTQKQQYNTP*YKVTPL Trigger: TAATGGGGTGACTTTGTAGCATGGTGTGTTGTATTG...TTGCTTTTGTGTCCTACTGTTCAGCCATGTCAAATATGTATACCCTGACTTTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| 3UTR-3UTR CCA 90 bp | ATACAACACACCATGCTACAAAGTCACCCCATTAAAACATCCTTCCAAAGTCAATATACATATTTGACATaGCTGAACAGTAGGACACAA | + |
|
Preference number: 2 (lower is better) Translates to: IQHTMLQSHPIKTSFQSQYTYLT*LNSRTQ Trigger: TTGTGTCCTACTGTTCAGCCATGTCAAATATGTATA...TTGACTTTGGAAGGATGTTTTAATGGGGTGACTTTGTAGCATGGTGTGTTGTAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| 3UTR CCA 72 bp | CCTCCTCTTCCTCCTCGTCCGCCTTGTCAGCAGCTGTaGAAACGGAGGGCACCGCGTCTTCCGGGGCTGCAG | + |
|
Preference number: 3 (lower is better) Translates to: PPLPPRPPCQQL*KRRAPRLPGLQ Trigger: CTGCAGCCCCGGAAGACGCGGTGCCCTCCGTTTCCACAGCTGCTGACAAGGCGGACGAGGAGGAAGAGGAGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153280.2 |
||
| 3UTR GCA 72 bp | AGCTGTGGAAACGGAGGGCACCGCGTCTTCCGGGGCTaGAGTGGGAGCCTGGCTCTCATCTTTATGCTCTTT | + |
|
Preference number: 3 (lower is better) Translates to: SCGNGGHRVFRG*SGSLALIFMLF Trigger: AAAGAGCATAAAGATGAGAGCCAGGCTCCCACTGCAGCCCCGGAAGACGCGGTGCCCTCCGTTTCCACAGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000134367.4 ENSMUST00000153280.2 |
||
| 3UTR CCA 72 bp | TTGGCTGTGCCTGCGCACAACACTGGCCCAGGGTTGTaGGTATCTACTGGGTTCCTCAGAGGCAGAGAGGGT | + |
|
Preference number: 3 (lower is better) Translates to: LAVPAHNTGPGL*VSTGFLRGREG Trigger: ACCCTCTCTGCCTCTGAGGAACCCAGTAGATACCCACAACCCTGGGCCAGTGTTGTGCGCAGGCACAGCCAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| 3UTR GCA 72 bp | CAGAGCTATTCCAGAGGATGGCAGCCAGCTCGGGAATaGTCCCCTCCTGAAGTAGGGTTAATGGCCCTGACC | + |
|
Preference number: 3 (lower is better) Translates to: QSYSRGWQPARE*SPPEVGLMALT Trigger: GGTCAGGGCCATTAACCCTACTTCAGGAGGGGAGCATTCCCGAGCTGGCTGCCATCCTCTGGAATAGCTCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| 3UTR-3UTR CAA 90 bp | GGACATGAGGAGACAAGGGAGATGATGGCCCCGGTGGGTGCTGGACTTCCCCCAAGTATTGATCATGGTTaGCAGGTATTGGCCGGGTGT | + |
|
Preference number: 3 (lower is better) Translates to: GHEETREMMAPVGAGLPPSIDHG*QVLAGC Trigger: ACACCCGGCCAATACCTGCAAACCATGATCAATACT...TGGGGGAAGTCCAGCACCCACCGGGGCCATCATCTCCCTTGTCTCCTCATGTCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| 3UTR TCA 72 bp | CAGAGGATGGCAGCCAGCTCGGGAATGCTCCCCTCCTaGAGTAGGGTTAATGGCCCTGACCTTGTGTCAAAG | + |
|
Preference number: 3 (lower is better) Translates to: QRMAASSGMLPS*SRVNGPDLVSK Trigger: CTTTGACACAAGGTCAGGGCCATTAACCCTACTTCAGGAGGGGAGCATTCCCGAGCTGGCTGCCATCCTCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| 3UTR-3UTR CAA 90 bp | GAAGCCAATACCCTGGTCCCTGAACCTCATTGCCTTGTCAGTGAAGCCTTGGTGAGTATTGATCATGGTTaGCAGGTATTGGCCGGGTGT | + |
|
Preference number: 3 (lower is better) Translates to: EANTLVPEPHCLVSEALVSIDHG*QVLAGC Trigger: ACACCCGGCCAATACCTGCAAACCATGATCAATACT...CACCAAGGCTTCACTGACAAGGCAATGAGGTTCAGGGACCAGGGTATTGGCTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| 3UTR-3UTR CAA 90 bp | CCACCCACTACAGAATTAGTTCAATACAACACACCATGCTACAAAGTCACCCCAGGGTGTCTGCCAGTGTaGGGACATGAAGGAGGCTTC | + |
|
Preference number: 3 (lower is better) Translates to: PPTTELVQYNTPCYKVTPGCLPV*GHEGGF Trigger: GAAGCCTCCTTCATGTCCCAACACTGGCAGACACCC...TGGGGTGACTTTGTAGCATGGTGTGTTGTATTGAACTAATTCTGTAGTGGGTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| 3UTR TCA 72 bp | TCCCTGAACCTCATTGCCTTGTCAGTGAAGCCTTGGTaGCCCCAAAGACTATCAGTTAGAAGCATCAAGGTC | + |
|
Preference number: 3 (lower is better) Translates to: SLNLIALSVKPW*PQRLSVRSIKV Trigger: GACCTTGATGCTTCTAACTGATAGTCTTTGGGGTCACCAAGGCTTCACTGACAAGGCAATGAGGTTCAGGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| 3UTR-3UTR CAA 90 bp | GTCAAAGCCAGAGAAAGAGGGATTCTAGGTTACAGCACTTGGTATGCTTTGGAATCAGGGTATACATATTaGACATGGCTGAACAGTAGG | + |
|
Preference number: 3 (lower is better) Translates to: VKARERGILGYSTWYALESGYTY*TWLNSR Trigger: CCTACTGTTCAGCCATGTCAAATATGTATACCCTGA...TTCCAAAGCATACCAAGTGCTGTAACCTAGAATCCCTCTTTCTCTGGCTTTGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| 3UTR GCA 72 bp | CCACCCACTACAGAATTAGTTCAATACAACACACCATaGTACAAAGTCACCCCATTAAAACATCCTTCCAAA | + |
|
Preference number: 3 (lower is better) Translates to: PPTTELVQYNTP*YKVTPLKHPSK Trigger: TTTGGAAGGATGTTTTAATGGGGTGACTTTGTAGCATGGTGTGTTGTATTGAACTAATTCTGTAGTGGGTGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| 3UTR-3UTR CAA 90 bp | CAATACAACACACCATGCTACAAAGTCACCCCATTAAAACATCCTTCCAAAGTCTCTAGGTTACAGCACTaGGTATGCTTTGGAATAAAT | + |
|
Preference number: 3 (lower is better) Translates to: QYNTPCYKVTPLKHPSKVSRLQH*VCFGIN Trigger: ATTTATTCCAAAGCATACCAAGTGCTGTAACCTAGA...GACTTTGGAAGGATGTTTTAATGGGGTGACTTTGTAGCATGGTGTGTTGTATTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| 3UTR-3UTR CAA 90 bp | ATACAACACACCATGCTACAAAGTCACCCCATTAAAACATCCTTCCAAAGTCAATCTAGGTTACAGCACTaGGTATGCTTTGGAATAAAT | + |
|
Preference number: 3 (lower is better) Translates to: IQHTMLQSHPIKTSFQSQSRLQH*VCFGIN Trigger: ATTTATTCCAAAGCATACCAAGTGCTGTAACCTAGA...TTGACTTTGGAAGGATGTTTTAATGGGGTGACTTTGTAGCATGGTGTGTTGTAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| CDS-3UTR CCA 90 bp | TTCCTCCTCGTCCGCCTTGTCAGCAGCTGTGGAAACGGAGGGCACCGCGTCTTCATAAGCCCGGCACAGTaGAGGCGAAGGCGCCGGCGC | + |
|
Preference number: 4 (lower is better) Translates to: FLLVRLVSSCGNGGHRVFISPAQ*RRRRRR Trigger: GCGCCGGCGCCTTCGCCTCCACTGTGCCGGGCTTAT...GAAGACGCGGTGCCCTCCGTTTCCACAGCTGCTGACAAGGCGGACGAGGAGGAA 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000134367.4 ENSMUST00000153280.2 |
||
| CDS-3UTR CCA 90 bp | TCCTCGTCCGCCTTGTCAGCAGCTGTGGAAACGGAGGGCACCGCGTCTTCCGGGTGTCGCAGGCGCCTTTaGCGAGGTCACTGCAGAGCC | + |
|
Preference number: 4 (lower is better) Translates to: SSSALSAAVETEGTASSGCRRRL*RGHCRA Trigger: GGCTCTGCAGTGACCTCGCCAAAGGCGCCTGCGACA...CCCGGAAGACGCGGTGCCCTCCGTTTCCACAGCTGCTGACAAGGCGGACGAGGA 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134367.4 |
||
| CDS-3UTR CCA 90 bp | CGGAGGGCACCGCGTCTTCCGGGGCTGCAGTGGGAGCCTGGCTCTCATCTTTATGGTAGATGCGGAAACTaGCTTCGGCCGGGCCGTGAA | + |
|
Preference number: 4 (lower is better) Translates to: RRAPRLPGLQWEPGSHLYGRCGN*LRPGRE Trigger: TTCACGGCCCGGCCGAAGCCAGTTTCCGCATCTACC...ATAAAGATGAGAGCCAGGCTCCCACTGCAGCCCCGGAAGACGCGGTGCCCTCCG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134367.4 |
||
| CDS-3UTR GCA 90 bp | AAACGGAGGGCACCGCGTCTTCCGGGGCTGCAGTGGGAGCCTGGCTCTCATCTTCTTTGGCGAGGTCACTaGAGAGCCCGGGGATGTTTT | + |
|
Preference number: 4 (lower is better) Translates to: KRRAPRLPGLQWEPGSHLLWRGH*RARGCF Trigger: AAAACATCCCCGGGCTCTGCAGTGACCTCGCCAAAG...AAGATGAGAGCCAGGCTCCCACTGCAGCCCCGGAAGACGCGGTGCCCTCCGTTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000134367.4 |
||
| CDS-3UTR CCA 90 bp | GGCCCCGGTGGGTGCTGGACTTCCCCCACCCACTACAGAATTAGTTCAATACAAATAAGCCCGGCACAGTaGAGGCGAAGGCGCCGGCGC | + |
|
Preference number: 4 (lower is better) Translates to: GPGGCWTSPTHYRISSIQISPAQ*RRRRRR Trigger: GCGCCGGCGCCTTCGCCTCCACTGTGCCGGGCTTAT...TTGTATTGAACTAATTCTGTAGTGGGTGGGGGAAGTCCAGCACCCACCGGGGCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| 3UTR CAA 72 bp | TCTTCCTCCTCTTCCTCCTCTTCCTCCTCGTCCGCCTaGTCAGCAGCTGTGGAAACGGAGGGCACCGCGTCT | + |
|
Preference number: 4 (lower is better) Translates to: SSSSSSSSSSSA*SAAVETEGTAS Trigger: AGACGCGGTGCCCTCCGTTTCCACAGCTGCTGACAAGGCGGACGAGGAGGAAGAGGAGGAAGAGGAGGAAGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153280.2 |
||
| CDS-3UTR TCA 90 bp | ACAAGGGAGATGATGGCCCCGGTGGGTGCTGGACTTCCCCCACCCACTACAGAAGATAGAGGGGGCTGTTaGCATTGTATAAGCCCGGCA | + |
|
Preference number: 4 (lower is better) Translates to: TREMMAPVGAGLPPPTTEDRGGC*HCISPA Trigger: TGCCGGGCTTATACAATGTCAACAGCCCCCTCTATC...TTCTGTAGTGGGTGGGGGAAGTCCAGCACCCACCGGGGCCATCATCTCCCTTGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| CDS-3UTR TCA 90 bp | ACCGCGTCTTCCGGGGCTGCAGTGGGAGCCTGGCTCTCATCTTTATGCTCTTTCGATAGAGGGGGCTGTTaGCATTGTATAAGCCCGGCA | + |
|
Preference number: 4 (lower is better) Translates to: TASSGAAVGAWLSSLCSFDRGGC*HCISPA Trigger: TGCCGGGCTTATACAATGTCAACAGCCCCCTCTATC...GAAAGAGCATAAAGATGAGAGCCAGGCTCCCACTGCAGCCCCGGAAGACGCGGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000134367.4 ENSMUST00000153280.2 |
||
| CDS-3UTR CCA 90 bp | TTGGCTGTGCCTGCGCACAACACTGGCCCAGGGTTGTGGGTATCTACTGGGTTCCGCTTCTCTGCGAGTTaGGTGCAAAGGAGCAAGAAG | + |
|
Preference number: 4 (lower is better) Translates to: LAVPAHNTGPGLWVSTGFRFSAS*VQRSKK Trigger: CTTCTTGCTCCTTTGCACCCAACTCGCAGAGAAGCG...GAACCCAGTAGATACCCACAACCCTGGGCCAGTGTTGTGCGCAGGCACAGCCAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048715.9 |
||
| 3UTR CAA 72 bp | ATTTTGGCTGTGCCTGCGCACAACACTGGCCCAGGGTaGTGGGTATCTACTGGGTTCCTCAGAGGCAGAGAG | + |
|
Preference number: 4 (lower is better) Translates to: ILAVPAHNTGPG*WVSTGFLRGRE Trigger: CTCTCTGCCTCTGAGGAACCCAGTAGATACCCACAACCCTGGGCCAGTGTTGTGCGCAGGCACAGCCAAAAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| 3UTR CAA 72 bp | GAGTGCCTCTCAAAGAGGCCTGTGCTAGGTAGTATTTaGGCTGTGCCTGCGCACAACACTGGCCCAGGGTTG | + |
|
Preference number: 4 (lower is better) Translates to: ECLSKRPVLGSI*AVPAHNTGPGL Trigger: CAACCCTGGGCCAGTGTTGTGCGCAGGCACAGCCAAAATACTACCTAGCACAGGCCTCTTTGAGAGGCACTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| CDS-3UTR CCA 90 bp | GCCCTGACCTTGTGTCAAAGCCAGAGAAAGAGGGATTCTAGGTTACAGCACTTGGTCGGCTCGGCATTTTaGAAGAGAGAAGCCCCCGCC | + |
|
Preference number: 4 (lower is better) Translates to: ALTLCQSQRKRDSRLQHLVGSAF*KREAPA Trigger: GGCGGGGGCTTCTCTCTTCCAAAATGCCGAGCCGAC...CAAGTGCTGTAACCTAGAATCCCTCTTTCTCTGGCTTTGACACAAGGTCAGGGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048715.9 |
||
| 3UTR CAA 72 bp | CTAGTAGTAGGTAGTATTGATCATGGTTTGCAGGTATaGGCCGGGTGTGTGATGGGGGTGGGGCAGGTGCTG | + |
|
Preference number: 4 (lower is better) Translates to: LVVGSIDHGLQV*AGCVMGVGQVL Trigger: CAGCACCTGCCCCACCCCCATCACACACCCGGCCAATACCTGCAAACCATGATCAATACTACCTACTACTAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| CDS-3UTR GCA 90 bp | TGGGTATCTACTGGGTTCCTCAGAGGCAGAGAGGGTCCCCAAGGTGACCTAATTTCTCTGCGAGTTGGGTaGAAAGGAGCAAGAAGTCGG | + |
|
Preference number: 4 (lower is better) Translates to: WVSTGFLRGREGPQGDLISLRVG*KGARSR Trigger: CCGACTTCTTGCTCCTTTGCACCCAACTCGCAGAGA...AATTAGGTCACCTTGGGGACCCTCTCTGCCTCTGAGGAACCCAGTAGATACCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048715.9 |
||
| CDS-3UTR CCA 90 bp | GTAACTAAAATCAATGAGTCTCTTAAAGACGCTTTTCCAACTGTCCTGTGCAGCATAAGCCCGGCACAGTaGAGGCGAAGGCGCCGGCGC | + |
|
Preference number: 4 (lower is better) Translates to: VTKINESLKDAFPTVLCSISPAQ*RRRRRR Trigger: GCGCCGGCGCCTTCGCCTCCACTGTGCCGGGCTTAT...GCTGCACAGGACAGTTGGAAAAGCGTCTTTAAGAGACTCATTGATTTTAGTTAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| CDS-3UTR CCA 90 bp | GGTAGTTTAGGGCTAGTAGTAGGTAGTATTGATCATGGTTTGCAGGTATTGGCCTGTCGCAGGCGCCTTTaGCGAGGTCACTGCAGAGCC | + |
|
Preference number: 4 (lower is better) Translates to: GSLGLVVGSIDHGLQVLACRRRL*RGHCRA Trigger: GGCTCTGCAGTGACCTCGCCAAAGGCGCCTGCGACA...GGCCAATACCTGCAAACCATGATCAATACTACCTACTACTAGCCCTAAACTACC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048715.9 |
||
| CDS-3UTR CCA 90 bp | GGTGGGTGCTGGACTTCCCCCACCCACTACAGAATTAGTTCAATACAACACACCGCTGCAGTGGGAGCCTaGCTCTCATCTTTATGCTCT | + |
|
Preference number: 4 (lower is better) Translates to: GGCWTSPTHYRISSIQHTAAVGA*LSSLCS Trigger: AGAGCATAAAGATGAGAGCCAGGCTCCCACTGCAGC...GGTGTGTTGTATTGAACTAATTCTGTAGTGGGTGGGGGAAGTCCAGCACCCACC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048715.9 |
||
| 3UTR CAA 72 bp | AGTTTAGGGCTAGTAGTAGGTAGTATTGATCATGGTTaGCAGGTATTGGCCGGGTGTGTGATGGGGGTGGGG | + |
|
Preference number: 4 (lower is better) Translates to: SLGLVVGSIDHG*QVLAGCVMGVG Trigger: CCCCACCCCCATCACACACCCGGCCAATACCTGCAAACCATGATCAATACTACCTACTACTAGCCCTAAACT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| 3UTR CAA 72 bp | TGCTCCCCTCCTGAAGTAGGGTTAATGGCCCTGACCTaGTGTCAAAGCCAGAGAAAGAGGGATTCTAGGTTA | + |
|
Preference number: 4 (lower is better) Translates to: CSPPEVGLMALT*CQSQRKRDSRL Trigger: TAACCTAGAATCCCTCTTTCTCTGGCTTTGACACAAGGTCAGGGCCATTAACCCTACTTCAGGAGGGGAGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| CDS-3UTR CCA 90 bp | CAATACAACACACCATGCTACAAAGTCACCCCATTAAAACATCCTTCCAAAGTCCCTTGTCAGCAGCTGTaGAAACGGAGGGCACCGCGT | + |
|
Preference number: 4 (lower is better) Translates to: QYNTPCYKVTPLKHPSKVPCQQL*KRRAPR Trigger: ACGCGGTGCCCTCCGTTTCCACAGCTGCTGACAAGG...GACTTTGGAAGGATGTTTTAATGGGGTGACTTTGTAGCATGGTGTGTTGTATTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048715.9 |
||
| CDS-3UTR CCA 90 bp | ATACAACACACCATGCTACAAAGTCACCCCATTAAAACATCCTTCCAAAGTCAAGGTAGATGCGGAAACTaGCTTCGGCCGGGCCGTGAA | + |
|
Preference number: 4 (lower is better) Translates to: IQHTMLQSHPIKTSFQSQGRCGN*LRPGRE Trigger: TTCACGGCCCGGCCGAAGCCAGTTTCCGCATCTACC...TTGACTTTGGAAGGATGTTTTAATGGGGTGACTTTGTAGCATGGTGTGTTGTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048715.9 |
||
| CDS-3UTR GCA 90 bp | GAAAAGTCAGGGTATACATATTTGACATGGCTGAACAGTAGGACACAAAAGCAACTTTGGCGAGGTCACTaGAGAGCCCGGGGATGTTTT | + |
|
Preference number: 4 (lower is better) Translates to: EKSGYTYLTWLNSRTQKQLWRGH*RARGCF Trigger: AAAACATCCCCGGGCTCTGCAGTGACCTCGCCAAAG...TTGCTTTTGTGTCCTACTGTTCAGCCATGTCAAATATGTATACCCTGACTTTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000048715.9 |
||
| CDS-3UTR GCA 90 bp | CCCCCACCCACTACAGAATTAGTTCAATACAACACACCATGCTACAAAGTCACCTGGCTCTCATCTTTATaGTCTTTCTTCCACTTCATG | + |
|
Preference number: 4 (lower is better) Translates to: PPPTTELVQYNTPCYKVTWLSSL*SFFHFM Trigger: CATGAAGTGGAAGAAAGAGCATAAAGATGAGAGCCA...GGTGACTTTGTAGCATGGTGTGTTGTATTGAACTAATTCTGTAGTGGGTGGGGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048715.9 |
||
| CDS-3UTR TCA 90 bp | TACAGAATTAGTTCAATACAACACACCATGCTACAAAGTCACCCCATTAAAACAGATAGAGGGGGCTGTTaGCATTGTATAAGCCCGGCA | + |
|
Preference number: 4 (lower is better) Translates to: YRISSIQHTMLQSHPIKTDRGGC*HCISPA Trigger: TGCCGGGCTTATACAATGTCAACAGCCCCCTCTATC...TGTTTTAATGGGGTGACTTTGTAGCATGGTGTGTTGTATTGAACTAATTCTGTA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| CDS TCA 90 bp | GGAGGCGAAGGCGCCGGCGCCCGGCCCGTAGCCGCTTCTCTGATTTaGTGCTCCAGCGCCAACACCGCAGGCGCGGTGTCTCCTCTAGCC | + |
|
Preference number: 5 (lower is better) Translates to: GGEGAGARPVAASLI*CSSANTAGAVSPLA Trigger: GGCTAGAGGAGACACCGCGCCTGCGGTGTTGGCGCTGGAGCATCAAATCAGAGAAGCGGCTACGGGCCGGGCGCCGGCGCCTTCGCCTCC 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153280.2 |
||
| CDS GCA 90 bp | GCACGCCCTCGTCCGCCTTGTCGCAGGCGCCTTTGGCGAGGTCACTaGAGAGCCCGGGGATGTTTTGGTCGTAGGAGGCGCAGGGCAGGT | + |
|
Preference number: 5 (lower is better) Translates to: ARPRPPCRRRLWRGH*RARGCFGRRRRRAG Trigger: ACCTGCCCTGCGCCTCCTACGACCAAAACATCCCCGGGCTCTGCAGTGACCTCGCCAAAGGCGCCTGCGACAAGGCGGACGAGGGCGTGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000048715.9 ENSMUST00000134367.4 ENSMUST00000140316.2 ENSMUST00000150041.4 |
||
| CDS TCA 90 bp | CCAGGCCATAGCCGGACGCGAAGGGGCTCTGATAGAGGGGGCTGTTaGCATTGTATAAGCCCGGCACAGTGGAGGCGAAGGCGCCGGCGC | + |
|
Preference number: 5 (lower is better) Translates to: PGHSRTRRGSDRGGC*HCISPAQWRRRRRR Trigger: GCGCCGGCGCCTTCGCCTCCACTGTGCCGGGCTTATACAATGTCAACAGCCCCCTCTATCAGAGCCCCTTCGCGTCCGGCTATGGCCTGG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000048715.9 ENSMUST00000134367.4 ENSMUST00000140316.2 ENSMUST00000153280.2 |
||
| CDS-3UTR CAA 90 bp | CGGAGGGCACCGCGTCTTCCGGGGCTGCAGTGGGAGCCTGGCTCTCATCTTTATGAGCCCGGGGATGTTTaGGTCGTAGGAGGCGCAGGG | + |
|
Preference number: 5 (lower is better) Translates to: RRAPRLPGLQWEPGSHLYEPGDV*VVGGAG Trigger: CCCTGCGCCTCCTACGACCAAAACATCCCCGGGCTC...ATAAAGATGAGAGCCAGGCTCCCACTGCAGCCCCGGAAGACGCGGTGCCCTCCG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000134367.4 ENSMUST00000153280.2 |
||
| CDS CCA 90 bp | AGGCGAAGGCGCCGGCGCCCGGCCCGTAGCCGCTTCTCTGCGAGTTaGGTGCAAAGGAGCAAGAAGTCGGCTCGGCATTTTGGAAGAGAG | + |
|
Preference number: 5 (lower is better) Translates to: RRRRRRPARSRFSAS*VQRSKKSARHFGRE Trigger: CTCTCTTCCAAAATGCCGAGCCGACTTCTTGCTCCTTTGCACCCAACTCGCAGAGAAGCGGCTACGGGCCGGGCGCCGGCGCCTTCGCCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000140316.2 |
||
| CDS-3UTR CAA 90 bp | CGGAGGGCACCGCGTCTTCCGGGGCTGCAGTGGGAGCCTGGCTCTCATCTTTATTTGTCGCAGGCGCCTTaGGCGAGGTCACTGCAGAGC | + |
|
Preference number: 5 (lower is better) Translates to: RRAPRLPGLQWEPGSHLYLSQAP*ARSLQS Trigger: GCTCTGCAGTGACCTCGCCAAAGGCGCCTGCGACAA...ATAAAGATGAGAGCCAGGCTCCCACTGCAGCCCCGGAAGACGCGGTGCCCTCCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134367.4 |
||
| CDS GCA 90 bp | GAAGGCGCCGGCGCCCGGCCCGTAGCCGCTTCTCTGCGAGTTGGGTaGAAAGGAGCAAGAAGTCGGCTCGGCATTTTGGAAGAGAGAAGC | + |
|
Preference number: 5 (lower is better) Translates to: EGAGARPVAASLRVG*KGARSRLGILEERS Trigger: GCTTCTCTCTTCCAAAATGCCGAGCCGACTTCTTGCTCCTTTGCACCCAACTCGCAGAGAAGCGGCTACGGGCCGGGCGCCGGCGCCTTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000140316.2 |
||
| CDS-3UTR CAA 90 bp | GTGGAAACGGAGGGCACCGCGTCTTCCGGGGCTGCAGTGGGAGCCTGGCTCTCAAGGGGGCTGTTGACATaGTATAAGCCCGGCACAGTG | + |
|
Preference number: 5 (lower is better) Translates to: VETEGTASSGAAVGAWLSRGLLT*YKPGTV Trigger: CACTGTGCCGGGCTTATACAATGTCAACAGCCCCCT...TGAGAGCCAGGCTCCCACTGCAGCCCCGGAAGACGCGGTGCCCTCCGTTTCCAC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000134367.4 ENSMUST00000153280.2 |
||
| CDS-3UTR CAA 90 bp | CATGAGGAGACAAGGGAGATGATGGCCCCGGTGGGTGCTGGACTTCCCCCACCCAGGGGGCTGTTGACATaGTATAAGCCCGGCACAGTG | + |
|
Preference number: 5 (lower is better) Translates to: HEETREMMAPVGAGLPPPRGLLT*YKPGTV Trigger: CACTGTGCCGGGCTTATACAATGTCAACAGCCCCCT...GGGTGGGGGAAGTCCAGCACCCACCGGGGCCATCATCTCCCTTGTCTCCTCATG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| CDS-3UTR CAA 90 bp | TCCTCCTCGTCCGCCTTGTCAGCAGCTGTGGAAACGGAGGGCACCGCGTCTTCCCCTTTAAGACCTGATTaGATGCTCCAGCGCCAACAC | + |
|
Preference number: 5 (lower is better) Translates to: SSSSALSAAVETEGTASSPLRPD*MLQRQH Trigger: GTGTTGGCGCTGGAGCATCAAATCAGGTCTTAAAGG...GGAAGACGCGGTGCCCTCCGTTTCCACAGCTGCTGACAAGGCGGACGAGGAGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134367.4 |
||
| CDS TCA 90 bp | CGTAGCCGCTTCTCTCTCTCTATAAGCAGGGAAACCTTTAAGACCTaGTTTGATGCTCCAGCGCCAACACCGCAGGCGCGGTGTCTCCTC | + |
|
Preference number: 5 (lower is better) Translates to: RSRFSLSISRETFKT*FDAPAPTPQARCLL Trigger: GAGGAGACACCGCGCCTGCGGTGTTGGCGCTGGAGCATCAAATCAGGTCTTAAAGGTTTCCCTGCTTATAGAGAGAGAGAAGCGGCTACG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134367.4 |
||
| CDS-3UTR CAA 90 bp | TTCCTCAGAGGCAGAGAGGGTCCCCAAGGTGACCTAATTTCCCTGGGAGCTAAAGCCCCCGCCGTATATTaGCTAAAAAGCGCGTTCACA | + |
|
Preference number: 5 (lower is better) Translates to: FLRGREGPQGDLISLGAKAPAVY*LKSAFT Trigger: TGTGAACGCGCTTTTTAGCAAATATACGGCGGGGGC...TTTAGCTCCCAGGGAAATTAGGTCACCTTGGGGACCCTCTCTGCCTCTGAGGAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000048715.9 |
||
| CDS-3UTR CAA 90 bp | GGGTTAATGGCCCTGACCTTGTGTCAAAGCCAGAGAAAGAGGGATTCTAGGTTAAGTCGGCTCGGCATTTaGGAAGAGAGAAGCCCCCGC | + |
|
Preference number: 5 (lower is better) Translates to: GLMALTLCQSQRKRDSRLSRLGI*EERSPR Trigger: GCGGGGGCTTCTCTCTTCCAAAATGCCGAGCCGACT...TAACCTAGAATCCCTCTTTCTCTGGCTTTGACACAAGGTCAGGGCCATTAACCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048715.9 |
||
| CDS-3UTR CAA 90 bp | GGTGGGTGCTGGACTTCCCCCACCCACTACAGAATTAGTTCAATACAACACACCCCGCTTCTCTGCGAGTaGGGTGCAAAGGAGCAAGAA | + |
|
Preference number: 5 (lower is better) Translates to: GGCWTSPTHYRISSIQHTPLLCE*GAKEQE Trigger: TTCTTGCTCCTTTGCACCCAACTCGCAGAGAAGCGG...GGTGTGTTGTATTGAACTAATTCTGTAGTGGGTGGGGGAAGTCCAGCACCCACC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048715.9 |
||
| CDS-3UTR CAA 90 bp | GTAACTAAAATCAATGAGTCTCTTAAAGACGCTTTTCCAACTGTCCTGTGCAGCGAGCCCGGGGATGTTTaGGTCGTAGGAGGCGCAGGG | + |
|
Preference number: 5 (lower is better) Translates to: VTKINESLKDAFPTVLCSEPGDV*VVGGAG Trigger: CCCTGCGCCTCCTACGACCAAAACATCCCCGGGCTC...GCTGCACAGGACAGTTGGAAAAGCGTCTTTAAGAGACTCATTGATTTTAGTTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| CDS-3UTR CAA 90 bp | ACACCATGCTACAAAGTCACCCCATTAAAACATCCTTCCAAAGTCAAGACATTCGAGCCCGGGGATGTTTaGGTCGTAGGAGGCGCAGGG | + |
|
Preference number: 5 (lower is better) Translates to: TPCYKVTPLKHPSKVKTFEPGDV*VVGGAG Trigger: CCCTGCGCCTCCTACGACCAAAACATCCCCGGGCTC...GAATGTCTTGACTTTGGAAGGATGTTTTAATGGGGTGACTTTGTAGCATGGTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000153280.2 |
||
| CDS-3UTR CAA 90 bp | ACAGAATTAGTTCAATACAACACACCATGCTACAAAGTCACCCCATTAAAACATTTGTCGCAGGCGCCTTaGGCGAGGTCACTGCAGAGC | + |
|
Preference number: 5 (lower is better) Translates to: TELVQYNTPCYKVTPLKHLSQAP*ARSLQS Trigger: GCTCTGCAGTGACCTCGCCAAAGGCGCCTGCGACAA...ATGTTTTAATGGGGTGACTTTGTAGCATGGTGTGTTGTATTGAACTAATTCTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048715.9 |
||
| CDS CAA 72 bp | AGGCGCCGGCGCCCGGCCCGTAGCCGCTTCTCTGATTaGATGCTCCAGCGCCAACACCGCAGGCGCGGTGTC | + |
|
Preference number: 6 (lower is better) Translates to: RRRRPARSRFSD*MLQRQHRRRGV Trigger: GACACCGCGCCTGCGGTGTTGGCGCTGGAGCATCAAATCAGAGAAGCGGCTACGGGCCGGGCGCCGGCGCCT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153280.2 |
||
| CDS CAA 90 bp | TGGAGGCGAAGGCGCCGGCGCCCGGCCCGTAGCCGCTTCTCTGATTaGATGCTCCAGCGCCAACACCGCAGGCGCGGTGTCTCCTCTAGC | + |
|
Preference number: 6 (lower is better) Translates to: WRRRRRRPARSRFSD*MLQRQHRRRGVSSS Trigger: GCTAGAGGAGACACCGCGCCTGCGGTGTTGGCGCTGGAGCATCAAATCAGAGAAGCGGCTACGGGCCGGGCGCCGGCGCCTTCGCCTCCA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153280.2 |
||
| CDS CAA 90 bp | GTCGCAGGCGCCTTTGGCGAGGTCACTGCAGAGCCCGGGGATGTTTaGGTCGTAGGAGGCGCAGGGCAGGTTGTAGGCGTCGGCTCCCAG | + |
|
Preference number: 6 (lower is better) Translates to: VAGAFGEVTAEPGDV*VVGGAGQVVGVGSQ Trigger: CTGGGAGCCGACGCCTACAACCTGCCCTGCGCCTCCTACGACCAAAACATCCCCGGGCTCTGCAGTGACCTCGCCAAAGGCGCCTGCGAC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000048715.9 ENSMUST00000134367.4 ENSMUST00000140316.2 ENSMUST00000150041.4 |
||
| CDS GCA 72 bp | CGTCCGCCTTGTCGCAGGCGCCTTTGGCGAGGTCACTaGAGAGCCCGGGGATGTTTTGGTCGTAGGAGGCGC | + |
|
Preference number: 6 (lower is better) Translates to: RPPCRRRLWRGH*RARGCFGRRRR Trigger: GCGCCTCCTACGACCAAAACATCCCCGGGCTCTGCAGTGACCTCGCCAAAGGCGCCTGCGACAAGGCGGACG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000048715.9 ENSMUST00000134367.4 ENSMUST00000140316.2 ENSMUST00000150041.4 |
||
| CDS CCA 72 bp | CGCCGGCGCCCGGCCCGTAGCCGCTTCTCTGCGAGTTaGGTGCAAAGGAGCAAGAAGTCGGCTCGGCATTTT | + |
|
Preference number: 6 (lower is better) Translates to: RRRPARSRFSAS*VQRSKKSARHF Trigger: AAAATGCCGAGCCGACTTCTTGCTCCTTTGCACCCAACTCGCAGAGAAGCGGCTACGGGCCGGGCGCCGGCG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000140316.2 |
||
| CDS CCA 72 bp | GAAGCACGCCCTCGTCCGCCTTGTCGCAGGCGCCTTTaGCGAGGTCACTGCAGAGCCCGGGGATGTTTTGGT | + |
|
Preference number: 6 (lower is better) Translates to: EARPRPPCRRRL*RGHCRARGCFG Trigger: ACCAAAACATCCCCGGGCTCTGCAGTGACCTCGCCAAAGGCGCCTGCGACAAGGCGGACGAGGGCGTGCTTC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000048715.9 ENSMUST00000134367.4 ENSMUST00000140316.2 ENSMUST00000150041.4 |
||
| CDS CAA 72 bp | GCCTTTGGCGAGGTCACTGCAGAGCCCGGGGATGTTTaGGTCGTAGGAGGCGCAGGGCAGGTTGTAGGCGTC | + |
|
Preference number: 6 (lower is better) Translates to: AFGEVTAEPGDV*VVGGAGQVVGV Trigger: GACGCCTACAACCTGCCCTGCGCCTCCTACGACCAAAACATCCCCGGGCTCTGCAGTGACCTCGCCAAAGGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000048715.9 ENSMUST00000134367.4 ENSMUST00000140316.2 ENSMUST00000150041.4 |
||
| CDS GCA 72 bp | GGCGCCCGGCCCGTAGCCGCTTCTCTGCGAGTTGGGTaGAAAGGAGCAAGAAGTCGGCTCGGCATTTTGGAA | + |
|
Preference number: 6 (lower is better) Translates to: GARPVAASLRVG*KGARSRLGILE Trigger: TTCCAAAATGCCGAGCCGACTTCTTGCTCCTTTGCACCCAACTCGCAGAGAAGCGGCTACGGGCCGGGCGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000140316.2 |
||
| CDS TCA 72 bp | AGCCGGACGCGAAGGGGCTCTGATAGAGGGGGCTGTTaGCATTGTATAAGCCCGGCACAGTGGAGGCGAAGG | + |
|
Preference number: 6 (lower is better) Translates to: SRTRRGSDRGGC*HCISPAQWRRR Trigger: CCTTCGCCTCCACTGTGCCGGGCTTATACAATGTCAACAGCCCCCTCTATCAGAGCCCCTTCGCGTCCGGCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000048715.9 ENSMUST00000134367.4 ENSMUST00000140316.2 ENSMUST00000153280.2 |
||
| CDS TCA 72 bp | CCCCGTTCTGGAAATGGCCTCTGGTACAGTGATGAGTaGGGGATCCCGGAGGTCTCAATTCTCCTTGCCTTT | + |
|
Preference number: 6 (lower is better) Translates to: PRSGNGLWYSDE*GIPEVSILLAF Trigger: AAAGGCAAGGAGAATTGAGACCTCCGGGATCCCTCACTCATCACTGTACCAGAGGCCATTTCCAGAACGGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000140316.2 |
||
| CDS TCA 72 bp | TTCTCTCTCTCTATAAGCAGGGAAACCTTTAAGACCTaGTTTGATGCTCCAGCGCCAACACCGCAGGCGCGG | + |
|
Preference number: 6 (lower is better) Translates to: FSLSISRETFKT*FDAPAPTPQAR Trigger: CCGCGCCTGCGGTGTTGGCGCTGGAGCATCAAATCAGGTCTTAAAGGTTTCCCTGCTTATAGAGAGAGAGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134367.4 |
||
| CDS CAA 90 bp | TCTCTGCGAGTTGGGTGCAAAGGAGCAAGAAGTCGGCTCGGCATTTaGGAAGAGAGAAGCCCCCGCCGTATATTTGCTAAAAAGCGCGTT | + |
|
Preference number: 6 (lower is better) Translates to: SLRVGCKGARSRLGI*EERSPRRIFAKKRV Trigger: AACGCGCTTTTTAGCAAATATACGGCGGGGGCTTCTCTCTTCCAAAATGCCGAGCCGACTTCTTGCTCCTTTGCACCCAACTCGCAGAGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000140316.2 |
||
| CDS CAA 72 bp | GTTGGGTGCAAAGGAGCAAGAAGTCGGCTCGGCATTTaGGAAGAGAGAAGCCCCCGCCGTATATTTGCTAAA | + |
|
Preference number: 6 (lower is better) Translates to: VGCKGARSRLGI*EERSPRRIFAK Trigger: TTTAGCAAATATACGGCGGGGGCTTCTCTCTTCCAAAATGCCGAGCCGACTTCTTGCTCCTTTGCACCCAAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000140316.2 |
||
| CDS CCA 72 bp | TTGGGTGCAAAGGAGCAAGAAGTCGGCTCGGCATTTTaGAAGAGAGAAGCCCCCGCCGTATATTTGCTAAAA | + |
|
Preference number: 6 (lower is better) Translates to: LGAKEQEVGSAF*KREAPAVYLLK Trigger: TTTTAGCAAATATACGGCGGGGGCTTCTCTCTTCCAAAATGCCGAGCCGACTTCTTGCTCCTTTGCACCCAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000048715.9 ENSMUST00000140316.2 |
||