Pregenerated sensors for HOXA6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000043219Ensembl transcript IDs: ENSMUST00000062829.9
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | CAAGGGCACCAGGGGGCAAAGCCAATAGAGGTTACAACGCTGGCCTGGTCCCTGCGGCCTCTGCGCCCGTaGCTCCCATACACGGCACCC | + |
|
Preference number: 4 (lower is better) Translates to: QGHQGAKPIEVTTLAWSLRPLRP*LPYTAP Trigger: GGGTGCCGTGTATGGGAGTCACGGGCGCAGAGGCCG...CAGGGACCAGGCCAGCGTTGTAACCTCTATTGGCTTTGCCCCCTGGTGCCCTTG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062829.9 |
||
| CDS-3UTR CCA 90 bp | AGGGCACCAGGGGGCAAAGCCAATAGAGGTTACAACGCTGGCCTGGTCCCTGCACCCAAGAAGGAGTCCTaGCCGCTGGGCAGGCTCCCA | + |
|
Preference number: 4 (lower is better) Translates to: RAPGGKANRGYNAGLVPAPKKES*PLGRLP Trigger: TGGGAGCCTGCCCAGCGGCCAGGACTCCTTCTTGGG...TGCAGGGACCAGGCCAGCGTTGTAACCTCTATTGGCTTTGCCCCCTGGTGCCCT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062829.9 |
||
| CDS-3UTR GCA 90 bp | CACCAGGGGGCAAAGCCAATAGAGGTTACAACGCTGGCCTGGTCCCTGCACTGGAGGTCTGGCGGCCTCTaGGCCCGTGACTCCCATACA | + |
|
Preference number: 4 (lower is better) Translates to: HQGAKPIEVTTLAWSLHWRSGGL*ARDSHT Trigger: TGTATGGGAGTCACGGGCGCAGAGGCCGCCAGACCT...CCAGTGCAGGGACCAGGCCAGCGTTGTAACCTCTATTGGCTTTGCCCCCTGGTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062829.9 |
||
| CDS-3UTR GCA 90 bp | GCACCAGGGGGCAAAGCCAATAGAGGTTACAACGCTGGCCTGGTCCCTGCACTGCGTAGGATGCCCGGTTaGAGGCCAAGACCGAGTTGG | + |
|
Preference number: 4 (lower is better) Translates to: APGGKANRGYNAGLVPALRRMPG*RPRPSW Trigger: CCAACTCGGTCTTGGCCTGCAACCGGGCATCCTACG...CAGTGCAGGGACCAGGCCAGCGTTGTAACCTCTATTGGCTTTGCCCCCTGGTGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062829.9 |
||
| CDS-3UTR TCA 90 bp | CCAGGGGGCAAAGCCAATAGAGGTTACAACGCTGGCCTGGTCCCTGCACTGGAGGTTATTGCCCGAGGGTaGGGCGCCACTGAGGTCTTT | + |
|
Preference number: 4 (lower is better) Translates to: PGGKANRGYNAGLVPALEVIARG*GATEVF Trigger: AAAGACCTCAGTGGCGCCTCACCCTCGGGCAATAAC...CTCCAGTGCAGGGACCAGGCCAGCGTTGTAACCTCTATTGGCTTTGCCCCCTGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062829.9 |
||
| CDS-3UTR GCA 90 bp | ACAAGGGCACCAGGGGGCAAAGCCAATAGAGGTTACAACGCTGGCCTGGTCCCTCCCGTACTCGTAGGATaGCCGGTTGCAGGCCAAGAC | + |
|
Preference number: 4 (lower is better) Translates to: TRAPGGKANRGYNAGLVPPVLVG*PVAGQD Trigger: GTCTTGGCCTGCAACCGGGCATCCTACGAGTACGGG...AGGGACCAGGCCAGCGTTGTAACCTCTATTGGCTTTGCCCCCTGGTGCCCTTGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062829.9 |
||
| CDS-3UTR GCA 90 bp | ACAAGGGCACCAGGGGGCAAAGCCAATAGAGGTTACAACGCTGGCCTGGTCCCTCCCTCTGCTTGTTATTaGCCGAGGGTGAGGCGCCAC | + |
|
Preference number: 4 (lower is better) Translates to: TRAPGGKANRGYNAGLVPPSACY*PRVRRH Trigger: GTGGCGCCTCACCCTCGGGCAATAACAAGCAGAGGG...AGGGACCAGGCCAGCGTTGTAACCTCTATTGGCTTTGCCCCCTGGTGCCCTTGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062829.9 |
||
| CDS-3UTR GCA 90 bp | GGGCACCAGGGGGCAAAGCCAATAGAGGTTACAACGCTGGCCTGGTCCCTGCACCCGTCAGGTTTGTACTaGTGCTCGGGAGAAAAGTGC | + |
|
Preference number: 4 (lower is better) Translates to: GHQGAKPIEVTTLAWSLHPSGLY*CSGEKC Trigger: GCACTTTTCTCCCGAGCAGCAGTACAAACCTGACGG...GTGCAGGGACCAGGCCAGCGTTGTAACCTCTATTGGCTTTGCCCCCTGGTGCCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062829.9 |
||
| CDS-3UTR GCA 90 bp | AGGGCACCAGGGGGCAAAGCCAATAGAGGTTACAACGCTGGCCTGGTCCCTGCACTTTGCCCTGCACGCTaGCGTCAGGTTTGTACTGCT | + |
|
Preference number: 4 (lower is better) Translates to: RAPGGKANRGYNAGLVPALCPAR*RQVCTA Trigger: AGCAGTACAAACCTGACGGCAGCGTGCAGGGCAAAG...TGCAGGGACCAGGCCAGCGTTGTAACCTCTATTGGCTTTGCCCCCTGGTGCCCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062829.9 |
||
| CDS-3UTR GCA 90 bp | AGGGCACCAGGGGGCAAAGCCAATAGAGGTTACAACGCTGGCCTGGTCCCTGCATGTACTTCCGGTCGGTaGCTTCCTCATGGAGGGCTT | + |
|
Preference number: 4 (lower is better) Translates to: RAPGGKANRGYNAGLVPACTSGR*LPHGGL Trigger: AAGCCCTCCATGAGGAAGGCACCGACCGGAAGTACA...TGCAGGGACCAGGCCAGCGTTGTAACCTCTATTGGCTTTGCCCCCTGGTGCCCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062829.9 |
||
| CDS-3UTR TCA 90 bp | CCAGGGGGCAAAGCCAATAGAGGTTACAACGCTGGCCTGGTCCCTGCACTGGAGAGGGTGAGGCGCCACTaGGGTCTTTATCAGAATAGA | + |
|
Preference number: 4 (lower is better) Translates to: PGGKANRGYNAGLVPALERVRRH*GLYQNR Trigger: TCTATTCTGATAAAGACCTCAGTGGCGCCTCACCCT...CTCCAGTGCAGGGACCAGGCCAGCGTTGTAACCTCTATTGGCTTTGCCCCCTGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062829.9 |
||
| CDS-3UTR TCA 90 bp | AGGGCACCAGGGGGCAAAGCCAATAGAGGTTACAACGCTGGCCTGGTCCCTGCAATCAGAATAGAAACATaGGGCCCCGTACTCGTAGGA | + |
|
Preference number: 4 (lower is better) Translates to: RAPGGKANRGYNAGLVPAIRIET*GPVLVG Trigger: TCCTACGAGTACGGGGCCTCATGTTTCTATTCTGAT...TGCAGGGACCAGGCCAGCGTTGTAACCTCTATTGGCTTTGCCCCCTGGTGCCCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062829.9 |
||
| CDS-3UTR GCA 90 bp | CAGGGGGCAAAGCCAATAGAGGTTACAACGCTGGCCTGGTCCCTGCACTGGAGTTCAGGTTTGTACTGCTaGTCGGGAGAAAAGTGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: QGAKPIEVTTLAWSLHWSSGLYC*SGEKCR Trigger: CCTGCACTTTTCTCCCGAGCAGCAGTACAAACCTGA...ACTCCAGTGCAGGGACCAGGCCAGCGTTGTAACCTCTATTGGCTTTGCCCCCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062829.9 |
||
| CDS-3UTR CCA 90 bp | GCACCAGGGGGCAAAGCCAATAGAGGTTACAACGCTGGCCTGGTCCCTGCACTGGGCTCCCAGGGAAAGTaGGATTCACAAAATAGGAAC | + |
|
Preference number: 4 (lower is better) Translates to: APGGKANRGYNAGLVPALGSQGK*DSQNRN Trigger: GTTCCTATTTTGTGAATCCCACTTTCCCTGGGAGCC...CAGTGCAGGGACCAGGCCAGCGTTGTAACCTCTATTGGCTTTGCCCCCTGGTGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062829.9 |
||
| CDS-3UTR TCA 90 bp | CCAGGGGGCAAAGCCAATAGAGGTTACAACGCTGGCCTGGTCCCTGCACTGGAGTTGGTAAAAACAAGGTaGGGTGTATGTCTTGTCCGG | + |
|
Preference number: 4 (lower is better) Translates to: PGGKANRGYNAGLVPALELVKTR*GVCLVR Trigger: CCGGACAAGACATACACCTCACCTTGTTTTTACCAA...CTCCAGTGCAGGGACCAGGCCAGCGTTGTAACCTCTATTGGCTTTGCCCCCTGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000062829.9 |
||
| CDS-3UTR CCA 90 bp | AGGGCACCAGGGGGCAAAGCCAATAGAGGTTACAACGCTGGCCTGGTCCCTGCAAGGCCAAGACCGAGTTaGACTGTTGGTAAAAACAAG | + |
|
Preference number: 4 (lower is better) Translates to: RAPGGKANRGYNAGLVPARPRPS*TVGKNK Trigger: CTTGTTTTTACCAACAGTCCAACTCGGTCTTGGCCT...TGCAGGGACCAGGCCAGCGTTGTAACCTCTATTGGCTTTGCCCCCTGGTGCCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000062829.9 |
||
| CDS-3UTR CAA 90 bp | CACCAGGGGGCAAAGCCAATAGAGGTTACAACGCTGGCCTGGTCCCTGCACTGGCCGGGGCCCCTCTGCTaGTTATTGCCCGAGGGTGAG | + |
|
Preference number: 5 (lower is better) Translates to: HQGAKPIEVTTLAWSLHWPGPLC*LLPEGE Trigger: CTCACCCTCGGGCAATAACAAGCAGAGGGGCCCCGG...CCAGTGCAGGGACCAGGCCAGCGTTGTAACCTCTATTGGCTTTGCCCCCTGGTG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000062829.9 |
||
| CDS-3UTR CAA 90 bp | CAAGGGCACCAGGGGGCAAAGCCAATAGAGGTTACAACGCTGGCCTGGTCCCTGCCCCTCTGCTTGTTATaGCCCGAGGGTGAGGCGCCA | + |
|
Preference number: 5 (lower is better) Translates to: QGHQGAKPIEVTTLAWSLPLCLL*PEGEAP Trigger: TGGCGCCTCACCCTCGGGCAATAACAAGCAGAGGGG...CAGGGACCAGGCCAGCGTTGTAACCTCTATTGGCTTTGCCCCCTGGTGCCCTTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062829.9 |
||
| CDS-3UTR CAA 90 bp | CAAGGGCACCAGGGGGCAAAGCCAATAGAGGTTACAACGCTGGCCTGGTCCCTGTCCTCATGGAGGGCTTaGCCCTGCACGCTGCCGTCA | + |
|
Preference number: 5 (lower is better) Translates to: QGHQGAKPIEVTTLAWSLSSWRA*PCTLPS Trigger: TGACGGCAGCGTGCAGGGCAAAGCCCTCCATGAGGA...CAGGGACCAGGCCAGCGTTGTAACCTCTATTGGCTTTGCCCCCTGGTGCCCTTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062829.9 |
||
| CDS GCA 90 bp | TCCGCTGCATCCAGGGGTAAACAGGGCTTGTGTACTTCCGGTCGGTaGCTTCCTCATGGAGGGCTTTGCCCTGCACGCTGCCGTCAGGTT | + |
|
Preference number: 5 (lower is better) Translates to: SAASRGKQGLCTSGR*LPHGGLCPARCRQV Trigger: AACCTGACGGCAGCGTGCAGGGCAAAGCCCTCCATGAGGAAGGCACCGACCGGAAGTACACAAGCCCTGTTTACCCCTGGATGCAGCGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062829.9 |
||
| CDS-3UTR CAA 90 bp | GGGCACCAGGGGGCAAAGCCAATAGAGGTTACAACGCTGGCCTGGTCCCTGCACAGGGGTAAACAGGGCTaGTGTACTTCCGGTCGGTGC | + |
|
Preference number: 5 (lower is better) Translates to: GHQGAKPIEVTTLAWSLHRGKQG*CTSGRC Trigger: GCACCGACCGGAAGTACACAAGCCCTGTTTACCCCT...GTGCAGGGACCAGGCCAGCGTTGTAACCTCTATTGGCTTTGCCCCCTGGTGCCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062829.9 |
||
| CDS GCA 90 bp | CAGGGCTTGTGTACTTCCGGTCGGTGCCTTCCTCATGGAGGGCTTTaGCCTGCACGCTGCCGTCAGGTTTGTACTGCTGCTCGGGAGAAA | + |
|
Preference number: 5 (lower is better) Translates to: QGLCTSGRCLPHGGL*PARCRQVCTAAREK Trigger: TTTCTCCCGAGCAGCAGTACAAACCTGACGGCAGCGTGCAGGGCAAAGCCCTCCATGAGGAAGGCACCGACCGGAAGTACACAAGCCCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062829.9 |
||
| CDS-3UTR CAA 90 bp | GCACCAGGGGGCAAAGCCAATAGAGGTTACAACGCTGGCCTGGTCCCTGCACTGGGTGAGGTGTATGTCTaGTCCGGAAGACTCGACGCC | + |
|
Preference number: 5 (lower is better) Translates to: APGGKANRGYNAGLVPALGEVYV*SGRLDA Trigger: GGCGTCGAGTCTTCCGGACAAGACATACACCTCACC...CAGTGCAGGGACCAGGCCAGCGTTGTAACCTCTATTGGCTTTGCCCCCTGGTGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062829.9 |
||
| CDS-3UTR CAA 90 bp | GCACCAGGGGGCAAAGCCAATAGAGGTTACAACGCTGGCCTGGTCCCTGCACTGACGCTGCCGTCAGGTTaGTACTGCTGCTCGGGAGAA | + |
|
Preference number: 5 (lower is better) Translates to: APGGKANRGYNAGLVPALTLPSG*YCCSGE Trigger: TTCTCCCGAGCAGCAGTACAAACCTGACGGCAGCGT...CAGTGCAGGGACCAGGCCAGCGTTGTAACCTCTATTGGCTTTGCCCCCTGGTGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062829.9 |
||
| CDS GCA 90 bp | ACTTCCGGTCGGTGCCTTCCTCATGGAGGGCTTTGCCCTGCACGCTaGCGTCAGGTTTGTACTGCTGCTCGGGAGAAAAGTGCAGGTAGT | + |
|
Preference number: 5 (lower is better) Translates to: TSGRCLPHGGLCPAR*RQVCTAAREKSAGS Trigger: ACTACCTGCACTTTTCTCCCGAGCAGCAGTACAAACCTGACGGCAGCGTGCAGGGCAAAGCCCTCCATGAGGAAGGCACCGACCGGAAGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062829.9 |
||
| CDS GCA 90 bp | CTTGTGTACTTCCGGTCGGTGCCTTCCTCATGGAGGGCTTTGCCCTaGACGCTGCCGTCAGGTTTGTACTGCTGCTCGGGAGAAAAGTGC | + |
|
Preference number: 5 (lower is better) Translates to: LVYFRSVPSSWRALP*TLPSGLYCCSGEKC Trigger: GCACTTTTCTCCCGAGCAGCAGTACAAACCTGACGGCAGCGTGCAGGGCAAAGCCCTCCATGAGGAAGGCACCGACCGGAAGTACACAAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062829.9 |
||
| CDS TCA 90 bp | CCGGTTGCAGGCCAAGACCGAGTTGGACTGTTGGTAAAAACAAGGTaGGGTGTATGTCTTGTCCGGAAGACTCGACGCCCCGTAAGAGGC | + |
|
Preference number: 5 (lower is better) Translates to: PVAGQDRVGLLVKTR*GVCLVRKTRRPVRG Trigger: GCCTCTTACGGGGCGTCGAGTCTTCCGGACAAGACATACACCTCACCTTGTTTTTACCAACAGTCCAACTCGGTCTTGGCCTGCAACCGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062829.9 |
||
| CDS CCA 90 bp | AGGCCCCGTACTCGTAGGATGCCCGGTTGCAGGCCAAGACCGAGTTaGACTGTTGGTAAAAACAAGGTGAGGTGTATGTCTTGTCCGGAA | + |
|
Preference number: 5 (lower is better) Translates to: RPRTRRMPGCRPRPS*TVGKNKVRCMSCPE Trigger: TTCCGGACAAGACATACACCTCACCTTGTTTTTACCAACAGTCCAACTCGGTCTTGGCCTGCAACCGGGCATCCTACGAGTACGGGGCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062829.9 |
||
| CDS-3UTR CAA 90 bp | AGGGCACCAGGGGGCAAAGCCAATAGAGGTTACAACGCTGGCCTGGTCCCTGCACTGGCCTGCGTGGAGTaGATGAGTTTATTTTCCTTT | + |
|
Preference number: 5 (lower is better) Translates to: RAPGGKANRGYNAGLVPALACVE*MSLFSF Trigger: AAAGGAAAATAAACTCATCAACTCCACGCAGGCCAG...TGCAGGGACCAGGCCAGCGTTGTAACCTCTATTGGCTTTGCCCCCTGGTGCCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062829.9 |
||
| CDS GCA 90 bp | TATCAGAATAGAAACATGAGGCCCCGTACTCGTAGGATGCCCGGTTaGAGGCCAAGACCGAGTTGGACTGTTGGTAAAAACAAGGTGAGG | + |
|
Preference number: 5 (lower is better) Translates to: YQNRNMRPRTRRMPG*RPRPSWTVGKNKVR Trigger: CCTCACCTTGTTTTTACCAACAGTCCAACTCGGTCTTGGCCTGCAACCGGGCATCCTACGAGTACGGGGCCTCATGTTTCTATTCTGATA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062829.9 |
||
| CDS GCA 72 bp | TTCCGGTCGGTGCCTTCCTCATGGAGGGCTTTGCCCTaGACGCTGCCGTCAGGTTTGTACTGCTGCTCGGGA | + |
|
Preference number: 6 (lower is better) Translates to: FRSVPSSWRALP*TLPSGLYCCSG Trigger: TCCCGAGCAGCAGTACAAACCTGACGGCAGCGTGCAGGGCAAAGCCCTCCATGAGGAAGGCACCGACCGGAA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062829.9 |
||
| CDS GCA 72 bp | TCCAGGGGTAAACAGGGCTTGTGTACTTCCGGTCGGTaGCTTCCTCATGGAGGGCTTTGCCCTGCACGCTGC | + |
|
Preference number: 6 (lower is better) Translates to: SRGKQGLCTSGR*LPHGGLCPARC Trigger: GCAGCGTGCAGGGCAAAGCCCTCCATGAGGAAGGCACCGACCGGAAGTACACAAGCCCTGTTTACCCCTGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062829.9 |
||
| CDS CAA 72 bp | GTGTACTTCCGGTCGGTGCCTTCCTCATGGAGGGCTTaGCCCTGCACGCTGCCGTCAGGTTTGTACTGCTGC | + |
|
Preference number: 6 (lower is better) Translates to: VYFRSVPSSWRA*PCTLPSGLYCC Trigger: GCAGCAGTACAAACCTGACGGCAGCGTGCAGGGCAAAGCCCTCCATGAGGAAGGCACCGACCGGAAGTACAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062829.9 |
||
| CDS CAA 90 bp | ACAGGGCTTGTGTACTTCCGGTCGGTGCCTTCCTCATGGAGGGCTTaGCCCTGCACGCTGCCGTCAGGTTTGTACTGCTGCTCGGGAGAA | + |
|
Preference number: 6 (lower is better) Translates to: TGLVYFRSVPSSWRA*PCTLPSGLYCCSGE Trigger: TTCTCCCGAGCAGCAGTACAAACCTGACGGCAGCGTGCAGGGCAAAGCCCTCCATGAGGAAGGCACCGACCGGAAGTACACAAGCCCTGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062829.9 |
||
| CDS GCA 72 bp | CGGTGCCTTCCTCATGGAGGGCTTTGCCCTGCACGCTaGCGTCAGGTTTGTACTGCTGCTCGGGAGAAAAGT | + |
|
Preference number: 6 (lower is better) Translates to: RCLPHGGLCPAR*RQVCTAAREKS Trigger: ACTTTTCTCCCGAGCAGCAGTACAAACCTGACGGCAGCGTGCAGGGCAAAGCCCTCCATGAGGAAGGCACCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062829.9 |
||
| CDS GCA 72 bp | TGTACTTCCGGTCGGTGCCTTCCTCATGGAGGGCTTTaGCCTGCACGCTGCCGTCAGGTTTGTACTGCTGCT | + |
|
Preference number: 6 (lower is better) Translates to: CTSGRCLPHGGL*PARCRQVCTAA Trigger: AGCAGCAGTACAAACCTGACGGCAGCGTGCAGGGCAAAGCCCTCCATGAGGAAGGCACCGACCGGAAGTACA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062829.9 |
||
| CDS TCA 72 bp | GGCCAAGACCGAGTTGGACTGTTGGTAAAAACAAGGTaGGGTGTATGTCTTGTCCGGAAGACTCGACGCCCC | + |
|
Preference number: 6 (lower is better) Translates to: GQDRVGLLVKTR*GVCLVRKTRRP Trigger: GGGGCGTCGAGTCTTCCGGACAAGACATACACCTCACCTTGTTTTTACCAACAGTCCAACTCGGTCTTGGCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062829.9 |
||
| CDS TCA 72 bp | CCCTCTGCTTGTTATTGCCCGAGGGTGAGGCGCCACTaGGGTCTTTATCAGAATAGAAACATGAGGCCCCGT | + |
|
Preference number: 6 (lower is better) Translates to: PSACYCPRVRRH*GLYQNRNMRPR Trigger: ACGGGGCCTCATGTTTCTATTCTGATAAAGACCTCAGTGGCGCCTCACCCTCGGGCAATAACAAGCAGAGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062829.9 |
||
| CDS GCA 72 bp | AGAAACATGAGGCCCCGTACTCGTAGGATGCCCGGTTaGAGGCCAAGACCGAGTTGGACTGTTGGTAAAAAC | + |
|
Preference number: 6 (lower is better) Translates to: RNMRPRTRRMPG*RPRPSWTVGKN Trigger: GTTTTTACCAACAGTCCAACTCGGTCTTGGCCTGCAACCGGGCATCCTACGAGTACGGGGCCTCATGTTTCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062829.9 |
||
| CDS CCA 72 bp | ACTCGTAGGATGCCCGGTTGCAGGCCAAGACCGAGTTaGACTGTTGGTAAAAACAAGGTGAGGTGTATGTCT | + |
|
Preference number: 6 (lower is better) Translates to: TRRMPGCRPRPS*TVGKNKVRCMS Trigger: AGACATACACCTCACCTTGTTTTTACCAACAGTCCAACTCGGTCTTGGCCTGCAACCGGGCATCCTACGAGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062829.9 |
||