RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HOXA5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038253

Ensembl transcript IDs: ENSMUST00000048794.7

Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGTTCGTGCAAAGGGTCCTACAAAGGCACGCAGGGACACACCGCTTaGAGTCACAGTTTTCGTCACAGAGCCACTAGCCACTACACGTTG +
Preference number: 1 (lower is better)
Translates to: SSCKGSYKGTQGHTA*SHSFRHRATSHYTL
Trigger: CAACGTGTAGTGGCTAGTGGCTCTGTGACGAAAACTGTGACTCCAAGCGGTGTGTCCCTGCGTGCCTTTGTAGGACCCTTTGCACGAACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
3UTR TCA 90 bp TATACAGGCGCTATAATGGCAATAAACAGGCTCATGATTAAAAGATaGATTAGGGCAACGAGAACAGGGCTTCTTCACAGAAGGAACACA +
Preference number: 1 (lower is better)
Translates to: YTGAIMAINRLMIKR*IRATRTGLLHRRNT
Trigger: TGTGTTCCTTCTGTGAAGAAGCCCTGTTCTCGTTGCCCTAATTCATCTTTTAATCATGAGCCTGTTTATTGCCATTATAGCGCCTGTATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
3UTR-3UTR TCA 90 bp GCCACTAGCCACTACACGTTGAACAAGTTAATTTGTGTCTTATCAAGTCACCTCACAGCTTGGAGCTATTaGGACAGGAACACTTCCACG +
Preference number: 2 (lower is better)
Translates to: ATSHYTLNKLICVLSSHLTAWSY*DRNTST
Trigger: CGTGGAAGTGTTCCTGTCTCAATAGCTCCAAGCTGT...GAGGTGACTTGATAAGACACAAATTAACTTGTTCAACGTGTAGTGGCTAGTGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
3UTR-3UTR TCA 90 bp GTCTTATCAAGTCACCTCTACAACAGCATTAATTACACAAGGAATATAGGTAGTCTCATGATTAAAAGATaGATTAGGGCAACGAGAACA +
Preference number: 2 (lower is better)
Translates to: VLSSHLYNSINYTRNIGSLMIKR*IRATRT
Trigger: TGTTCTCGTTGCCCTAATTCATCTTTTAATCATGAG...ACTACCTATATTCCTTGTGTAATTAATGCTGTTGTAGAGGTGACTTGATAAGAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
3UTR-3UTR GCA 90 bp TGTGTCTTATCAAGTCACCTCTACAACAGCATTAATTACACAAGGAATATAGGTACACTTCCACGTACATaGACATTAAAGAACTCAAGT +
Preference number: 2 (lower is better)
Translates to: CVLSSHLYNSINYTRNIGTLPRT*TLKNSS
Trigger: ACTTGAGTTCTTTAATGTGCATGTACGTGGAAGTGT...ACCTATATTCCTTGTGTAATTAATGCTGTTGTAGAGGTGACTTGATAAGACACA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
3UTR CCA 72 bp AAAGGGTCCTACAAAGGCACGCAGGGACACACCGCTTaGAGTCACAGTTTTCGTCACAGAGCCACTAGCCAC +
Preference number: 3 (lower is better)
Translates to: KGSYKGTQGHTA*SHSFRHRATSH
Trigger: GTGGCTAGTGGCTCTGTGACGAAAACTGTGACTCCAAGCGGTGTGTCCCTGCGTGCCTTTGTAGGACCCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
3UTR GCA 72 bp TCAGAAAGTCACCTTAGTACTGACACTACAGAGAGCTaGCCGGCTACTACTGCTCAGTACTTTGGCCGCTCA +
Preference number: 3 (lower is better)
Translates to: SESHLSTDTTES*PATTAQYFGRS
Trigger: TGAGCGGCCAAAGTACTGAGCAGTAGTAGCCGGGCAGCTCTCTGTAGTGTCAGTACTAAGGTGACTTTCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
3UTR-3UTR CAA 90 bp TGTGTCTTATCAAGTCACCTCTACAACAGCATTAATTACACAAGGAATATAGGTGTGCAACACACAACATaGGCACTAAACGAGGTGGGG +
Preference number: 3 (lower is better)
Translates to: CVLSSHLYNSINYTRNIGVQHTT*ALNEVG
Trigger: CCCCACCTCGTTTAGTGCCAATGTTGTGTGTTGCAC...ACCTATATTCCTTGTGTAATTAATGCTGTTGTAGAGGTGACTTGATAAGACACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
3UTR GCA 72 bp CTTGGAGCTATTGAGACAGGAACACTTCCACGTACATaGACATTAAAGAACTCAAGTGCAACACACAACATT +
Preference number: 3 (lower is better)
Translates to: LGAIETGTLPRT*TLKNSSATHNI
Trigger: AATGTTGTGTGTTGCACTTGAGTTCTTTAATGTGCATGTACGTGGAAGTGTTCCTGTCTCAATAGCTCCAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
3UTR TCA 72 bp GCTATAATGGCAATAAACAGGCTCATGATTAAAAGATaGATTAGGGCAACGAGAACAGGGCTTCTTCACAGA +
Preference number: 3 (lower is better)
Translates to: AIMAINRLMIKR*IRATRTGLLHR
Trigger: TCTGTGAAGAAGCCCTGTTCTCGTTGCCCTAATTCATCTTTTAATCATGAGCCTGTTTATTGCCATTATAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS-3UTR GCA 90 bp TCCAGAGTTCGTGCAAAGGGTCCTACAAAGGCACGCAGGGACACACCGCTTGGAGGCGTCCTCCTCGGCTaGGGACGCCGTGCCAACCCC +
Preference number: 4 (lower is better)
Translates to: SRVRAKGPTKARRDTPLGGVLLG*GRRANP
Trigger: GGGGTTGGCACGGCGTCCGCAGCCGAGGAGGACGCC...TCCAAGCGGTGTGTCCCTGCGTGCCTTTGTAGGACCCTTTGCACGAACTCTGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS-3UTR CCA 90 bp TTCCAGAGTTCGTGCAAAGGGTCCTACAAAGGCACGCAGGGACACACCGCTTGGGTGGACGTGGCCGGCTaGCTGTACCTGGGCTCGGCG +
Preference number: 4 (lower is better)
Translates to: FQSSCKGSYKGTQGHTAWVDVAG*LYLGSA
Trigger: CGCCGAGCCCAGGTACAGCCAGCCGGCCACGTCCAC...CCAAGCGGTGTGTCCCTGCGTGCCTTTGTAGGACCCTTTGCACGAACTCTGGAA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS-3UTR GCA 90 bp AGTTCGTGCAAAGGGTCCTACAAAGGCACGCAGGGACACACCGCTTGGAGTCACCCGTACCTGCCGGAGTaGATGCTCGCCGAGTCCCTG +
Preference number: 4 (lower is better)
Translates to: SSCKGSYKGTQGHTAWSHPYLPE*MLAESL
Trigger: CAGGGACTCGGCGAGCATGCACTCCGGCAGGTACGG...GTGACTCCAAGCGGTGTGTCCCTGCGTGCCTTTGTAGGACCCTTTGCACGAACT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS-3UTR GCA 90 bp TTCCAGAGTTCGTGCAAAGGGTCCTACAAAGGCACGCAGGGACACACCGCTTGGAGCCGTAGCCGTACCTaGCGGAGTGCATGCTCGCCG +
Preference number: 4 (lower is better)
Translates to: FQSSCKGSYKGTQGHTAWSRSRT*RSACSP
Trigger: CGGCGAGCATGCACTCCGGCAGGTACGGCTACGGCT...CCAAGCGGTGTGTCCCTGCGTGCCTTTGTAGGACCCTTTGCACGAACTCTGGAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS-3UTR GCA 90 bp CAAGGGGAGTTTCAGAAAGTCACCTTAGTACTGACACTACAGAGAGCTGCCCGGTCGGGCGGTGGCGAGTaGGTGGACGTGGCCGGCTGG +
Preference number: 4 (lower is better)
Translates to: QGEFQKVTLVLTLQRAARSGGGE*VDVAGW
Trigger: CCAGCCGGCCACGTCCACGCACTCGCCACCGCCCGA...CCGGGCAGCTCTCTGTAGTGTCAGTACTAAGGTGACTTTCTGAAACTCCCCTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS-3UTR CCA 90 bp AGAGTTCGTGCAAAGGGTCCTACAAAGGCACGCAGGGACACACCGCTTGGAGTCGAGTTTTTCCCGCCGTaGTGGCTGTCGCTGCCGGGC +
Preference number: 4 (lower is better)
Translates to: RVRAKGPTKARRDTPLGVEFFPP*WLSLPG
Trigger: GCCCGGCAGCGACAGCCACCACGGCGGGAAAAACTC...GACTCCAAGCGGTGTGTCCCTGCGTGCCTTTGTAGGACCCTTTGCACGAACTCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS-3UTR GCA 90 bp GAGTTCGTGCAAAGGGTCCTACAAAGGCACGCAGGGACACACCGCTTGGAGTCAAGGCGCCGCTGGAGTTaGCCAGGGAGTTTTTCCCGC +
Preference number: 4 (lower is better)
Translates to: EFVQRVLQRHAGTHRLESRRRWS*PGSFSR
Trigger: GCGGGAAAAACTCCCTGGGCAACTCCAGCGGCGCCT...TGACTCCAAGCGGTGTGTCCCTGCGTGCCTTTGTAGGACCCTTTGCACGAACTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS-3UTR CCA 90 bp GAAAGTCACCTTAGTACTGACACTACAGAGAGCTGCCCGGCTACTACTGCTCAGGCGGTGGCGAGTGCGTaGACGTGGCCGGCTGGCTGT +
Preference number: 4 (lower is better)
Translates to: ESHLSTDTTESCPATTAQAVASA*TWPAGC
Trigger: ACAGCCAGCCGGCCACGTCCACGCACTCGCCACCGC...CTGAGCAGTAGTAGCCGGGCAGCTCTCTGTAGTGTCAGTACTAAGGTGACTTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS-3UTR CCA 90 bp ACCTTAGTACTGACACTACAGAGAGCTGCCCGGCTACTACTGCTCAGTACTTTGCCGCCTGCTCGCTGCTaGCAGGGGCGTCCTCCTCGG +
Preference number: 4 (lower is better)
Translates to: TLVLTLQRAARLLLLSTLPPARC*QGRPPR
Trigger: CCGAGGAGGACGCCCCTGCCAGCAGCGAGCAGGCGG...CAAAGTACTGAGCAGTAGTAGCCGGGCAGCTCTCTGTAGTGTCAGTACTAAGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS-3UTR TCA 90 bp TCCAGAGTTCGTGCAAAGGGTCCTACAAAGGCACGCAGGGACACACCGCTTGGACCGAACGGCCGACGCTaGGATCCATGCCATTGTAGC +
Preference number: 4 (lower is better)
Translates to: SRVRAKGPTKARRDTPLGPNGRR*DPCHCS
Trigger: GCTACAATGGCATGGATCTCAGCGTCGGCCGTTCGG...TCCAAGCGGTGTGTCCCTGCGTGCCTTTGTAGGACCCTTTGCACGAACTCTGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS-3UTR CCA 90 bp AGGGCAACGAGAACAGGGCTTCTTCACAGAAGGAACACAAGGGGAGTTTCAGAATTTTTCCCGCCGTGGTaGCTGTCGCTGCCGGGCGAG +
Preference number: 4 (lower is better)
Translates to: RATRTGLLHRRNTRGVSEFFPPW*LSLPGE
Trigger: CTCGCCCGGCAGCGACAGCCACCACGGCGGGAAAAA...TTCTGAAACTCCCCTTGTGTTCCTTCTGTGAAGAAGCCCTGTTCTCGTTGCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS-3UTR CCA 90 bp ATCTTTAACAGCTTGGAGCTATTGAGACAGGAACACTTCCACGTACATGCACATGGGTGCTGCCGGCGTTaGCCGAGGCGCCGCTGGAGT +
Preference number: 4 (lower is better)
Translates to: IFNSLELLRQEHFHVHAHGCCRR*PRRRWS
Trigger: ACTCCAGCGGCGCCTCGGCCAACGCCGGCAGCACCC...ATGTGCATGTACGTGGAAGTGTTCCTGTCTCAATAGCTCCAAGCTGTTAAAGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS-3UTR CCA 90 bp TCCAGAGTTCGTGCAAAGGGTCCTACAAAGGCACGCAGGGACACACCGCTTGGAGGCCCTTTTGCCTTCTaGGCCACCTATATTGTCGTG +
Preference number: 4 (lower is better)
Translates to: SRVRAKGPTKARRDTPLGGPFAF*ATYIVV
Trigger: CACGACAATATAGGTGGCCCAGAAGGCAAAAGGGCC...TCCAAGCGGTGTGTCCCTGCGTGCCTTTGTAGGACCCTTTGCACGAACTCTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS-3UTR CCA 90 bp ACATGCACATTAAAGAACTCAAGTGCAACACACAACATTGGCACTAAACGAGGTCAGCGGGTCGGGCGGTaGCGAGTGCGTGGACGTGGC +
Preference number: 4 (lower is better)
Translates to: TCTLKNSSATHNIGTKRGQRVGR*RVRGRG
Trigger: GCCACGTCCACGCACTCGCCACCGCCCGACCCGCTG...ACCTCGTTTAGTGCCAATGTTGTGTGTTGCACTTGAGTTCTTTAATGTGCATGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS-3UTR CCA 90 bp ATCTTTAACAGCTTGGAGCTATTGAGACAGGAACACTTCCACGTACATGCACATTCGCCGGAGCCAAAGTaGCCGGAACCCGAACGGCCG +
Preference number: 4 (lower is better)
Translates to: IFNSLELLRQEHFHVHAHSPEPK*PEPERP
Trigger: CGGCCGTTCGGGTTCCGGCCACTTTGGCTCCGGCGA...ATGTGCATGTACGTGGAAGTGTTCCTGTCTCAATAGCTCCAAGCTGTTAAAGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS-3UTR TCA 90 bp ACACTACAGAGAGCTGCCCGGCTACTACTGCTCAGTACTTTGGCCGCTCAGATGGAGAGGCAAAGGGCATaGGCTATTTCGATCCTTCTT +
Preference number: 4 (lower is better)
Translates to: TLQRAARLLLLSTLAAQMERQRA*AISILL
Trigger: AAGAAGGATCGAAATAGCTCATGCCCTTTGCCTCTC...CATCTGAGCGGCCAAAGTACTGAGCAGTAGTAGCCGGGCAGCTCTCTGTAGTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS-3UTR CCA 90 bp GAGACAGGAACACTTCCACGTACATGCACATTAAAGAACTCAAGTGCAACACACTGGCCGAGGCGCCGCTaGAGTTGCCCAGGGAGTTTT +
Preference number: 4 (lower is better)
Translates to: ETGTLPRTCTLKNSSATHWPRRR*SCPGSF
Trigger: AAAACTCCCTGGGCAACTCCAGCGGCGCCTCGGCCA...GTGTGTTGCACTTGAGTTCTTTAATGTGCATGTACGTGGAAGTGTTCCTGTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS-3UTR TCA 90 bp CAGGGCTTCTTCACAGAAGGAACACAAGGGGAGTTTCAGAAAGTCACCTTAGTATGCTCGCCGAGTCCCTaGATTGTTCGCTCACGGAAC +
Preference number: 4 (lower is better)
Translates to: QGFFTEGTQGEFQKVTLVCSPSP*IVRSRN
Trigger: GTTCCGTGAGCGAACAATTCAGGGACTCGGCGAGCA...TACTAAGGTGACTTTCTGAAACTCCCCTTGTGTTCCTTCTGTGAAGAAGCCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS-3UTR GCA 90 bp GCTGATCACAGTTTGCTTAAACAGCCAGACTTGGACAATATTTGTAACTTTTTCCGGCTGCGGACGCCGTaGCAACCCCCTCTCTGCTGC +
Preference number: 4 (lower is better)
Translates to: ADHSLLKQPDLDNICNFFRLRTP*QPPLCC
Trigger: GCAGCAGAGAGGGGGTTGGCACGGCGTCCGCAGCCG...GAAAAAGTTACAAATATTGTCCAAGTCTGGCTGTTTAAGCAAACTGTGATCAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS-3UTR CCA 90 bp GCTATTGAGACAGGAACACTTCCACGTACATGCACATTAAAGAACTCAAGTGCATCTCTGCTGCTGATGTaGGTGCTGCCGGCGTTGGCC +
Preference number: 4 (lower is better)
Translates to: AIETGTLPRTCTLKNSSASLLLM*VLPALA
Trigger: GGCCAACGCCGGCAGCACCCACATCAGCAGCAGAGA...TGCACTTGAGTTCTTTAATGTGCATGTACGTGGAAGTGTTCCTGTCTCAATAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS-3UTR TCA 90 bp AGAGTTCGTGCAAAGGGTCCTACAAAGGCACGCAGGGACACACCGCTTGGAGTCATAGCGACCGCAAAATaGGTTTACAAAATAAGAGCT +
Preference number: 4 (lower is better)
Translates to: RVRAKGPTKARRDTPLGVIATAK*VYKIRA
Trigger: AGCTCTTATTTTGTAAACTCATTTTGCGGTCGCTAT...GACTCCAAGCGGTGTGTCCCTGCGTGCCTTTGTAGGACCCTTTGCACGAACTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS-3UTR GCA 90 bp ATCTTTAACAGCTTGGAGCTATTGAGACAGGAACACTTCCACGTACATGCACATCCGTCCGGGCCCTTTTaGCTTCTGGGCCACCTATAT +
Preference number: 4 (lower is better)
Translates to: IFNSLELLRQEHFHVHAHPSGPF*LLGHLY
Trigger: ATATAGGTGGCCCAGAAGGCAAAAGGGCCCGGACGG...ATGTGCATGTACGTGGAAGTGTTCCTGTCTCAATAGCTCCAAGCTGTTAAAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
3UTR CAA 72 bp CACAGTTTTCGTCACAGAGCCACTAGCCACTACACGTaGAACAAGTTAATTTGTGTCTTATCAAGTCACCTC +
Preference number: 4 (lower is better)
Translates to: HSFRHRATSHYT*NKLICVLSSHL
Trigger: GAGGTGACTTGATAAGACACAAATTAACTTGTTCAACGTGTAGTGGCTAGTGGCTCTGTGACGAAAACTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS-3UTR GCA 90 bp AAGCTGATCACAGTTTGCTTAAACAGCCAGACTTGGACAATATTTGTAACTTTTCCGCGGCCATACTCATaGTTTTCAGCTTATTATCTT +
Preference number: 4 (lower is better)
Translates to: KLITVCLNSQTWTIFVTFPRPYS*FSAYYL
Trigger: AAGATAATAAGCTGAAAAGCATGAGTATGGCCGCGG...AAAAGTTACAAATATTGTCCAAGTCTGGCTGTTTAAGCAAACTGTGATCAGCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS CCA 90 bp CAGGGCAGCGGGTCGGGCGGTGGCGAGTGCGTGGACGTGGCCGGCTaGCTGTACCTGGGCTCGGCGGGCGCCGCACTGGCCCCAGCCGCG +
Preference number: 5 (lower is better)
Translates to: QGSGSGGGECVDVAG*LYLGSAGAALAPAA
Trigger: CGCGGCTGGGGCCAGTGCGGCGCCCGCCGAGCCCAGGTACAGCCAGCCGGCCACGTCCACGCACTCGCCACCGCCCGACCCGCTGCCCTG
80% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS GCA 90 bp GAGGGGGCCACCGCTGAGCAGGGCAGCGGGTCGGGCGGTGGCGAGTaGGTGGACGTGGCCGGCTGGCTGTACCTGGGCTCGGCGGGCGCC +
Preference number: 5 (lower is better)
Translates to: EGATAEQGSGSGGGE*VDVAGWLYLGSAGA
Trigger: GGCGCCCGCCGAGCCCAGGTACAGCCAGCCGGCCACGTCCACGCACTCGCCACCGCCCGACCCGCTGCCCTGCTCAGCGGTGGCCCCCTC
79% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS CCA 90 bp GGGCCACCGCTGAGCAGGGCAGCGGGTCGGGCGGTGGCGAGTGCGTaGACGTGGCCGGCTGGCTGTACCTGGGCTCGGCGGGCGCCGCAC +
Preference number: 5 (lower is better)
Translates to: GPPLSRAAGRAVASA*TWPAGCTWARRAPH
Trigger: GTGCGGCGCCCGCCGAGCCCAGGTACAGCCAGCCGGCCACGTCCACGCACTCGCCACCGCCCGACCCGCTGCCCTGCTCAGCGGTGGCCC
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS TCA 90 bp TTTCCCGCCGTGGTGGCTGTCGCTGCCGGGCGAGGGGGCCACCGCTaGGCAGGGCAGCGGGTCGGGCGGTGGCGAGTGCGTGGACGTGGC +
Preference number: 5 (lower is better)
Translates to: FPAVVAVAAGRGGHR*AGQRVGRWRVRGRG
Trigger: GCCACGTCCACGCACTCGCCACCGCCCGACCCGCTGCCCTGCTCAGCGGTGGCCCCCTCGCCCGGCAGCGACAGCCACCACGGCGGGAAA
77% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS GCA 90 bp TGTACCTGGGCTCGGCGGGCGCCGCACTGGCCCCAGCCGCGTAGCTaGGGGCGCGCTCGCCGGAGCCAAAGTGGCCGGAACCCGAACGGC +
Preference number: 5 (lower is better)
Translates to: CTWARRAPHWPQPRS*GRARRSQSGRNPNG
Trigger: GCCGTTCGGGTTCCGGCCACTTTGGCTCCGGCGAGCGCGCCCGCAGCTACGCGGCTGGGGCCAGTGCGGCGCCCGCCGAGCCCAGGTACA
77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS CCA 90 bp TGGACGTGGCCGGCTGGCTGTACCTGGGCTCGGCGGGCGCCGCACTaGCCCCAGCCGCGTAGCTGCGGGCGCGCTCGCCGGAGCCAAAGT +
Preference number: 5 (lower is better)
Translates to: WTWPAGCTWARRAPH*PQPRSCGRARRSQS
Trigger: ACTTTGGCTCCGGCGAGCGCGCCCGCAGCTACGCGGCTGGGGCCAGTGCGGCGCCCGCCGAGCCCAGGTACAGCCAGCCGGCCACGTCCA
77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS GCA 90 bp CGCTGGAGTTGCCCAGGGAGTTTTTCCCGCCGTGGTGGCTGTCGCTaGCGGGCGAGGGGGCCACCGCTGAGCAGGGCAGCGGGTCGGGCG +
Preference number: 5 (lower is better)
Translates to: RWSCPGSFSRRGGCR*RARGPPLSRAAGRA
Trigger: CGCCCGACCCGCTGCCCTGCTCAGCGGTGGCCCCCTCGCCCGGCAGCGACAGCCACCACGGCGGGAAAAACTCCCTGGGCAACTCCAGCG
74% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS CCA 90 bp GCCGAGGCGCCGCTGGAGTTGCCCAGGGAGTTTTTCCCGCCGTGGTaGCTGTCGCTGCCGGGCGAGGGGGCCACCGCTGAGCAGGGCAGC +
Preference number: 5 (lower is better)
Translates to: AEAPLELPREFFPPW*LSLPGEGATAEQGS
Trigger: GCTGCCCTGCTCAGCGGTGGCCCCCTCGCCCGGCAGCGACAGCCACCACGGCGGGAAAAACTCCCTGGGCAACTCCAGCGGCGCCTCGGC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS GCA 90 bp CTGGGCGCCCGCCTGCTCGCTGCTGGCAGGGGCGTCCTCCTCGGCTaGGGACGCCGTGCCAACCCCCTCTCTGCTGCTGATGTGGGTGCT +
Preference number: 5 (lower is better)
Translates to: LGARLLAAGRGVLLG*GRRANPLSAADVGA
Trigger: AGCACCCACATCAGCAGCAGAGAGGGGGTTGGCACGGCGTCCGCAGCCGAGGAGGACGCCCCTGCCAGCAGCGAGCAGGCGGGCGCCCAG
73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS CCA 90 bp TTGGCCGAGGCGCCGCTGGAGTTGCCCAGGGAGTTTTTCCCGCCGTaGTGGCTGTCGCTGCCGGGCGAGGGGGCCACCGCTGAGCAGGGC +
Preference number: 5 (lower is better)
Translates to: LAEAPLELPREFFPP*WLSLPGEGATAEQG
Trigger: GCCCTGCTCAGCGGTGGCCCCCTCGCCCGGCAGCGACAGCCACCACGGCGGGAAAAACTCCCTGGGCAACTCCAGCGGCGCCTCGGCCAA
73% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS TCA 90 bp CGCGCTCGCCGGAGCCAAAGTGGCCGGAACCCGAACGGCCGACGCTaGGATCCATGCCATTGTAGCCGTAGCCGTACCTGCCGGAGTGCA +
Preference number: 5 (lower is better)
Translates to: RARRSQSGRNPNGRR*DPCHCSRSRTCRSA
Trigger: TGCACTCCGGCAGGTACGGCTACGGCTACAATGGCATGGATCTCAGCGTCGGCCGTTCGGGTTCCGGCCACTTTGGCTCCGGCGAGCGCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS-3UTR CAA 90 bp GAAAGTCACCTTAGTACTGACACTACAGAGAGCTGCCCGGCTACTACTGCTCAGTGGGTGCTGCCGGCGTaGGCCGAGGCGCCGCTGGAG +
Preference number: 5 (lower is better)
Translates to: ESHLSTDTTESCPATTAQWVLPA*AEAPLE
Trigger: CTCCAGCGGCGCCTCGGCCAACGCCGGCAGCACCCA...CTGAGCAGTAGTAGCCGGGCAGCTCTCTGTAGTGTCAGTACTAAGGTGACTTTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS TCA 90 bp TGTAGCCGTAGCCGTACCTGCCGGAGTGCATGCTCGCCGAGTCCCTaGATTGTTCGCTCACGGAACTATGATCTCCATAATTATGCAACT +
Preference number: 5 (lower is better)
Translates to: CSRSRTCRSACSPSP*IVRSRNYDLHNYAT
Trigger: AGTTGCATAATTATGGAGATCATAGTTCCGTGAGCGAACAATTCAGGGACTCGGCGAGCATGCACTCCGGCAGGTACGGCTACGGCTACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS-3UTR CAA 90 bp GCTATTGAGACAGGAACACTTCCACGTACATGCACATTAAAGAACTCAAGTGCAGAGGCGCCGCTGGAGTaGCCCAGGGAGTTTTTCCCG +
Preference number: 5 (lower is better)
Translates to: AIETGTLPRTCTLKNSSAEAPLE*PREFFP
Trigger: CGGGAAAAACTCCCTGGGCAACTCCAGCGGCGCCTC...TGCACTTGAGTTCTTTAATGTGCATGTACGTGGAAGTGTTCCTGTCTCAATAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS-3UTR CAA 90 bp CAGGGCTTCTTCACAGAAGGAACACAAGGGGAGTTTCAGAAAGTCACCTTAGTACGCCGAGTCCCTGAATaGTTCGCTCACGGAACTATG +
Preference number: 5 (lower is better)
Translates to: QGFFTEGTQGEFQKVTLVRRVPE*FAHGTM
Trigger: CATAGTTCCGTGAGCGAACAATTCAGGGACTCGGCG...TACTAAGGTGACTTTCTGAAACTCCCCTTGTGTTCCTTCTGTGAAGAAGCCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS-3UTR CAA 90 bp GAGACAGGAACACTTCCACGTACATGCACATTAAAGAACTCAAGTGCAACACACGGTAGTCCGGGCCATTaGGATAGCGACCGCAAAATG +
Preference number: 5 (lower is better)
Translates to: ETGTLPRTCTLKNSSATHGSPGH*DSDRKM
Trigger: CATTTTGCGGTCGCTATCCAAATGGCCCGGACTACC...GTGTGTTGCACTTGAGTTCTTTAATGTGCATGTACGTGGAAGTGTTCCTGTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS TCA 72 bp GTGGTGGCTGTCGCTGCCGGGCGAGGGGGCCACCGCTaGGCAGGGCAGCGGGTCGGGCGGTGGCGAGTGCGT +
Preference number: 6 (lower is better)
Translates to: VVAVAAGRGGHR*AGQRVGRWRVR
Trigger: ACGCACTCGCCACCGCCCGACCCGCTGCCCTGCTCAGCGGTGGCCCCCTCGCCCGGCAGCGACAGCCACCAC
78% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS GCA 72 bp TGCCCAGGGAGTTTTTCCCGCCGTGGTGGCTGTCGCTaGCGGGCGAGGGGGCCACCGCTGAGCAGGGCAGCG +
Preference number: 6 (lower is better)
Translates to: CPGSFSRRGGCR*RARGPPLSRAA
Trigger: CGCTGCCCTGCTCAGCGGTGGCCCCCTCGCCCGGCAGCGACAGCCACCACGGCGGGAAAAACTCCCTGGGCA
74% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS CCA 72 bp GCGCCGCTGGAGTTGCCCAGGGAGTTTTTCCCGCCGTaGTGGCTGTCGCTGCCGGGCGAGGGGGCCACCGCT +
Preference number: 6 (lower is better)
Translates to: APLELPREFFPP*WLSLPGEGATA
Trigger: AGCGGTGGCCCCCTCGCCCGGCAGCGACAGCCACCACGGCGGGAAAAACTCCCTGGGCAACTCCAGCGGCGC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS GCA 72 bp GGGTGCTGCCGGCGTTGGCCGAGGCGCCGCTGGAGTTaGCCAGGGAGTTTTTCCCGCCGTGGTGGCTGTCGC +
Preference number: 6 (lower is better)
Translates to: GCCRRWPRRRWS*PGSFSRRGGCR
Trigger: GCGACAGCCACCACGGCGGGAAAAACTCCCTGGGCAACTCCAGCGGCGCCTCGGCCAACGCCGGCAGCACCC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS GCA 72 bp CGCCTGCTCGCTGCTGGCAGGGGCGTCCTCCTCGGCTaGGGACGCCGTGCCAACCCCCTCTCTGCTGCTGAT +
Preference number: 6 (lower is better)
Translates to: RLLAAGRGVLLG*GRRANPLSAAD
Trigger: ATCAGCAGCAGAGAGGGGGTTGGCACGGCGTCCGCAGCCGAGGAGGACGCCCCTGCCAGCAGCGAGCAGGCG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS CCA 72 bp CCGCTGGAGTTGCCCAGGGAGTTTTTCCCGCCGTGGTaGCTGTCGCTGCCGGGCGAGGGGGCCACCGCTGAG +
Preference number: 6 (lower is better)
Translates to: PLELPREFFPPW*LSLPGEGATAE
Trigger: CTCAGCGGTGGCCCCCTCGCCCGGCAGCGACAGCCACCACGGCGGGAAAAACTCCCTGGGCAACTCCAGCGG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS CAA 90 bp CTGCTGATGTGGGTGCTGCCGGCGTTGGCCGAGGCGCCGCTGGAGTaGCCCAGGGAGTTTTTCCCGCCGTGGTGGCTGTCGCTGCCGGGC +
Preference number: 6 (lower is better)
Translates to: LLMWVLPALAEAPLE*PREFFPPWWLSLPG
Trigger: GCCCGGCAGCGACAGCCACCACGGCGGGAAAAACTCCCTGGGCAACTCCAGCGGCGCCTCGGCCAACGCCGGCAGCACCCACATCAGCAG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS CAA 72 bp TGGGTGCTGCCGGCGTTGGCCGAGGCGCCGCTGGAGTaGCCCAGGGAGTTTTTCCCGCCGTGGTGGCTGTCG +
Preference number: 6 (lower is better)
Translates to: WVLPALAEAPLE*PREFFPPWWLS
Trigger: CGACAGCCACCACGGCGGGAAAAACTCCCTGGGCAACTCCAGCGGCGCCTCGGCCAACGCCGGCAGCACCCA
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS TCA 72 bp CGGAGCCAAAGTGGCCGGAACCCGAACGGCCGACGCTaGGATCCATGCCATTGTAGCCGTAGCCGTACCTGC +
Preference number: 6 (lower is better)
Translates to: RSQSGRNPNGRR*DPCHCSRSRTC
Trigger: GCAGGTACGGCTACGGCTACAATGGCATGGATCTCAGCGTCGGCCGTTCGGGTTCCGGCCACTTTGGCTCCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS TCA 72 bp AGCCGTACCTGCCGGAGTGCATGCTCGCCGAGTCCCTaGATTGTTCGCTCACGGAACTATGATCTCCATAAT +
Preference number: 6 (lower is better)
Translates to: SRTCRSACSPSP*IVRSRNYDLHN
Trigger: ATTATGGAGATCATAGTTCCGTGAGCGAACAATTCAGGGACTCGGCGAGCATGCACTCCGGCAGGTACGGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS CAA 90 bp GCCGTAGCCGTACCTGCCGGAGTGCATGCTCGCCGAGTCCCTGAATaGTTCGCTCACGGAACTATGATCTCCATAATTATGCAACTGGTA +
Preference number: 6 (lower is better)
Translates to: AVAVPAGVHARRVPE*FAHGTMISIIMQLV
Trigger: TACCAGTTGCATAATTATGGAGATCATAGTTCCGTGAGCGAACAATTCAGGGACTCGGCGAGCATGCACTCCGGCAGGTACGGCTACGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7
CDS CAA 72 bp GTACCTGCCGGAGTGCATGCTCGCCGAGTCCCTGAATaGTTCGCTCACGGAACTATGATCTCCATAATTATG +
Preference number: 6 (lower is better)
Translates to: VPAGVHARRVPE*FAHGTMISIIM
Trigger: CATAATTATGGAGATCATAGTTCCGTGAGCGAACAATTCAGGGACTCGGCGAGCATGCACTCCGGCAGGTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048794.7