Pregenerated sensors for HOXA4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000000942Ensembl transcript IDs: ENSMUST00000101395.3
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTCAGCACGTGCTGTCTGGCTGACTCAAAGGTAGTCGATGGCCAGTaGTTTCTTACAGGTGTCCAATCCTGGCAAAGTTGTCCAGGTCAG | + |
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Preference number: 1 (lower is better) Translates to: VSTCCLADSKVVDGQ*FLTGVQSWQSCPGQ Trigger: CTGACCTGGACAACTTTGCCAGGATTGGACACCTGTAAGAAAGCACTGGCCATCGACTACCTTTGAGTCAGCCAGACAGCACGTGCTGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101395.3 |
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| 3UTR GCA 90 bp | AGAAGAGGAAGGAAGGTTAGAAAGCTGGGAAGCTGGGAACCGGCCTaGTTCTTCTGCATACAAGTACATGTCCCCAGTCAGCACGTGCTG | + |
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Preference number: 1 (lower is better) Translates to: RRGRKVRKLGSWEPA*FFCIQVHVPSQHVL Trigger: CAGCACGTGCTGACTGGGGACATGTACTTGTATGCAGAAGAAGCAGGCCGGTTCCCAGCTTCCCAGCTTTCTAACCTTCCTTCCTCTTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101395.3 |
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| 3UTR CCA 90 bp | TCAAAGGTAGTCGATGGCCAGTGCTTTCTTACAGGTGTCCAATCCTaGCAAAGTTGTCCAGGTCAGCAGGTTGTTCCACTAAGCAGTAAC | + |
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Preference number: 1 (lower is better) Translates to: SKVVDGQCFLTGVQS*QSCPGQQVVPLSSN Trigger: GTTACTGCTTAGTGGAACAACCTGCTGACCTGGACAACTTTGCCAGGATTGGACACCTGTAAGAAAGCACTGGCCATCGACTACCTTTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101395.3 |
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| 3UTR GCA 90 bp | ACAGTTGTAAGTGAGTCTAAATGCATTTCCCTCTCCCCAACGCTGTaGCCCAGTATAAGACAACAATATCTCTCTAACAGTATCTTAAAT | + |
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Preference number: 1 (lower is better) Translates to: TVVSESKCISLSPTL*PSIRQQYLSNSILN Trigger: ATTTAAGATACTGTTAGAGAGATATTGTTGTCTTATACTGGGGCACAGCGTTGGGGAGAGGGAAATGCATTTAGACTCACTTACAACTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101395.3 |
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| 3UTR GCA 90 bp | CCCAGTATAAGACAACAATATCTCTCTAACAGTATCTTAAATAAATaGAAGGAGAGGAAACTACATGCCACACCTACCATCAAGGTCTAC | + |
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Preference number: 1 (lower is better) Translates to: PSIRQQYLSNSILNK*KERKLHATPTIKVY Trigger: GTAGACCTTGATGGTAGGTGTGGCATGTAGTTTCCTCTCCTTGCATTTATTTAAGATACTGTTAGAGAGATATTGTTGTCTTATACTGGG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101395.3 |
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| 3UTR-3UTR TCA 90 bp | GTCGATGGCCAGTGCTTTCTTACAGGTGTCCAATCCTGGCAAAGTTGTCCAGGTGACAGGAGCAGGAGATaGGTAGGGCACATAAGTGAG | + |
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Preference number: 2 (lower is better) Translates to: VDGQCFLTGVQSWQSCPGDRSRR*VGHISE Trigger: CTCACTTATGTGCCCTACTCATCTCCTGCTCCTGTC...ACCTGGACAACTTTGCCAGGATTGGACACCTGTAAGAAAGCACTGGCCATCGAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101395.3 |
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| 3UTR-3UTR TCA 90 bp | GTCCAATCCTGGCAAAGTTGTCCAGGTCAGCAGGTTGTTCCACTAAGCAGTAACTTAGGGAAGAGCAGATaGGGACAGGAGCAGGAGATG | + |
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Preference number: 2 (lower is better) Translates to: VQSWQSCPGQQVVPLSSNLGKSR*GQEQEM Trigger: CATCTCCTGCTCCTGTCCTCATCTGCTCTTCCCTAA...GTTACTGCTTAGTGGAACAACCTGCTGACCTGGACAACTTTGCCAGGATTGGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101395.3 |
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| 3UTR-3UTR CCA 90 bp | AAATGCATTTCCCTCTCCCCAACGCTGTGCCCCAGTATAAGACAACAATATCTCGGAAGGTTAGAAAGCTaGGAAGCTGGGAACCGGCCT | + |
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Preference number: 2 (lower is better) Translates to: KCISLSPTLCPSIRQQYLGRLES*EAGNRP Trigger: AGGCCGGTTCCCAGCTTCCCAGCTTTCTAACCTTCC...GAGATATTGTTGTCTTATACTGGGGCACAGCGTTGGGGAGAGGGAAATGCATTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101395.3 |
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| 3UTR-3UTR TCA 90 bp | AAATGCATTTCCCTCTCCCCAACGCTGTGCCCCAGTATAAGACAACAATATCTCAGTAGGGCACATAAGTaGGAGAAACTGATCCAGGTC | + |
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Preference number: 2 (lower is better) Translates to: KCISLSPTLCPSIRQQYLSRAHK*EKLIQV Trigger: GACCTGGATCAGTTTCTCTCACTTATGTGCCCTACT...GAGATATTGTTGTCTTATACTGGGGCACAGCGTTGGGGAGAGGGAAATGCATTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101395.3 |
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| 3UTR-3UTR CCA 90 bp | TCTAACAGTATCTTAAATAAATGCAAGGAGAGGAAACTACATGCCACACCTACCTGGTTTCCAGCAAGTTaGATTTTGTTTTGGTGTCTC | + |
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Preference number: 2 (lower is better) Translates to: SNSILNKCKERKLHATPTWFPAS*ILFWCL Trigger: GAGACACCAAAACAAAATCCAACTTGCTGGAAACCA...GGTAGGTGTGGCATGTAGTTTCCTCTCCTTGCATTTATTTAAGATACTGTTAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101395.3 |
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| 3UTR-3UTR CCA 90 bp | CCTCTTTATACAACCATATCTCTCTGTACAGTTGTAAGTGAGTCTAAATGCATTTCTTCTTTTTGGTTATaGTTTCCAGCAAGTTGGATT | + |
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Preference number: 2 (lower is better) Translates to: PLYTTISLCTVVSESKCISSFWL*FPASWI Trigger: AATCCAACTTGCTGGAAACCATAACCAAAAAGAAGA...AATGCATTTAGACTCACTTACAACTGTACAGAGAGATATGGTTGTATAAAGAGG 34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000101395.3 |
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| 3UTR GCA 72 bp | AGAAAGCTGGGAAGCTGGGAACCGGCCTGCTTCTTCTaGATACAAGTACATGTCCCCAGTCAGCACGTGCTG | + |
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Preference number: 3 (lower is better) Translates to: RKLGSWEPACFF*IQVHVPSQHVL Trigger: CAGCACGTGCTGACTGGGGACATGTACTTGTATGCAGAAGAAGCAGGCCGGTTCCCAGCTTCCCAGCTTTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101395.3 |
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| 3UTR GCA 72 bp | AGGAAGGTTAGAAAGCTGGGAAGCTGGGAACCGGCCTaGTTCTTCTGCATACAAGTACATGTCCCCAGTCAG | + |
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Preference number: 3 (lower is better) Translates to: RKVRKLGSWEPA*FFCIQVHVPSQ Trigger: CTGACTGGGGACATGTACTTGTATGCAGAAGAAGCAGGCCGGTTCCCAGCTTCCCAGCTTTCTAACCTTCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101395.3 |
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| 3UTR CCA 72 bp | GTCGATGGCCAGTGCTTTCTTACAGGTGTCCAATCCTaGCAAAGTTGTCCAGGTCAGCAGGTTGTTCCACTA | + |
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Preference number: 3 (lower is better) Translates to: VDGQCFLTGVQS*QSCPGQQVVPL Trigger: TAGTGGAACAACCTGCTGACCTGGACAACTTTGCCAGGATTGGACACCTGTAAGAAAGCACTGGCCATCGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101395.3 |
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| 3UTR CCA 72 bp | CGCAGAAGAGGAAGGAAGGTTAGAAAGCTGGGAAGCTaGGAACCGGCCTGCTTCTTCTGCATACAAGTACAT | + |
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Preference number: 3 (lower is better) Translates to: RRRGRKVRKLGS*EPACFFCIQVH Trigger: ATGTACTTGTATGCAGAAGAAGCAGGCCGGTTCCCAGCTTCCCAGCTTTCTAACCTTCCTTCCTCTTCTGCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101395.3 |
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| 3UTR GCA 72 bp | AGTGAGTCTAAATGCATTTCCCTCTCCCCAACGCTGTaGCCCAGTATAAGACAACAATATCTCTCTAACAGT | + |
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Preference number: 3 (lower is better) Translates to: SESKCISLSPTL*PSIRQQYLSNS Trigger: ACTGTTAGAGAGATATTGTTGTCTTATACTGGGGCACAGCGTTGGGGAGAGGGAAATGCATTTAGACTCACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101395.3 |
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| 3UTR-3UTR CAA 90 bp | CTTTATACAACCATATCTCTCTGTACAGTTGTAAGTGAGTCTAAATGCATTTCCCCAGCAAGTTGGATTTaGTTTTGGTGTCTCGGGTTT | + |
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Preference number: 3 (lower is better) Translates to: LYTTISLCTVVSESKCISPASWI*FWCLGF Trigger: AAACCCGAGACACCAAAACAAAATCCAACTTGCTGG...GGAAATGCATTTAGACTCACTTACAACTGTACAGAGAGATATGGTTGTATAAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101395.3 |
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| 3UTR-3UTR CAA 90 bp | TCTAACAGTATCTTAAATAAATGCAAGGAGAGGAAACTACATGCCACACCTACCAAGTTGGATTTTGTTTaGGTGTCTCGGGTTTACTTA | + |
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Preference number: 3 (lower is better) Translates to: SNSILNKCKERKLHATPTKLDFV*VSRVYL Trigger: TAAGTAAACCCGAGACACCAAAACAAAATCCAACTT...GGTAGGTGTGGCATGTAGTTTCCTCTCCTTGCATTTATTTAAGATACTGTTAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101395.3 |
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| CDS-3UTR CCA 90 bp | TTTCTTACAGGTGTCCAATCCTGGCAAAGTTGTCCAGGTCAGCAGGTTGTTCCATCGCGACAGCCGGGGTaGTGGGGCCGGGAGCGCAGT | + |
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Preference number: 4 (lower is better) Translates to: FLTGVQSWQSCPGQQVVPSRQPG*WGRERS Trigger: ACTGCGCTCCCGGCCCCACCACCCCGGCTGTCGCGA...TGGAACAACCTGCTGACCTGGACAACTTTGCCAGGATTGGACACCTGTAAGAAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101395.3 |
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| CDS-3UTR GCA 90 bp | GTGCTTTCTTACAGGTGTCCAATCCTGGCAAAGTTGTCCAGGTCAGCAGGTTGTTGGGCTGTGAGTTTGTaGTTTCCCAGGCGGGCCGGC | + |
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Preference number: 4 (lower is better) Translates to: VLSYRCPILAKLSRSAGCWAVSL*FPRRAG Trigger: GCCGGCCCGCCTGGGAAAGCACAAACTCACAGCCCA...ACAACCTGCTGACCTGGACAACTTTGCCAGGATTGGACACCTGTAAGAAAGCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101395.3 |
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| CDS-3UTR CCA 90 bp | CGATGGCCAGTGCTTTCTTACAGGTGTCCAATCCTGGCAAAGTTGTCCAGGTCACGAAAGGAGGGAACTTaGGCTCGATGTAGTTGGAGT | + |
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Preference number: 4 (lower is better) Translates to: RWPVLSYRCPILAKLSRSRKEGT*ARCSWS Trigger: ACTCCAACTACATCGAGCCCAAGTTCCCTCCTTTCG...TGACCTGGACAACTTTGCCAGGATTGGACACCTGTAAGAAAGCACTGGCCATCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101395.3 |
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| CDS-3UTR CCA 90 bp | TTTCTTACAGGTGTCCAATCCTGGCAAAGTTGTCCAGGTCAGCAGGTTGTTCCATTGACGGCGCTCACGTaGATCTTCTTCATCCAGGGG | + |
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Preference number: 4 (lower is better) Translates to: FLTGVQSWQSCPGQQVVPLTALT*IFFIQG Trigger: CCCCTGGATGAAGAAGATCCACGTGAGCGCCGTCAA...TGGAACAACCTGCTGACCTGGACAACTTTGCCAGGATTGGACACCTGTAAGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101395.3 |
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| CDS-3UTR CCA 90 bp | TTTCTTACAGGTGTCCAATCCTGGCAAAGTTGTCCAGGTCAGCAGGTTGTTCCAGTGGGGATGGGGGTGTaGGCTGTGAGTTTGTGCTTT | + |
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Preference number: 4 (lower is better) Translates to: FLTGVQSWQSCPGQQVVPVGMGV*AVSLCF Trigger: AAAGCACAAACTCACAGCCCACACCCCCATCCCCAC...TGGAACAACCTGCTGACCTGGACAACTTTGCCAGGATTGGACACCTGTAAGAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000101395.3 |
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| CDS-3UTR CCA 90 bp | TTCCAGCAAGTTGGATTTTGTTTTGGTGTCTCGGGTTTACTTAGGGAAGAGCAGGGGCCGAGGCAGTGTTaGAAGATCGCATCTTGGTGT | + |
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Preference number: 4 (lower is better) Translates to: FQQVGFCFGVSGLLREEQGPRQC*KIASWC Trigger: ACACCAAGATGCGATCTTCCAACACTGCCTCGGCCC...CTGCTCTTCCCTAAGTAAACCCGAGACACCAAAACAAAATCCAACTTGCTGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000101395.3 |
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| CDS-3UTR CCA 90 bp | AAGGTTAGAAAGCTGGGAAGCTGGGAACCGGCCTGCTTCTTCTGCATACAAGTATGGAAGATCGCATCTTaGTGTTGGGAAGTTTGTGGT | + |
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Preference number: 4 (lower is better) Translates to: KVRKLGSWEPACFFCIQVWKIAS*CWEVCG Trigger: ACCACAAACTTCCCAACACCAAGATGCGATCTTCCA...TACTTGTATGCAGAAGAAGCAGGCCGGTTCCCAGCTTCCCAGCTTTCTAACCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101395.3 |
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| CDS-3UTR CCA 90 bp | CCTCTTTATACAACCATATCTCTCTGTACAGTTGTAAGTGAGTCTAAATGCATTATATGGAGGAGGGAATaGGTGTGGAAGCACCAGGGA | + |
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Preference number: 4 (lower is better) Translates to: PLYTTISLCTVVSESKCIIWRRE*VWKHQG Trigger: TCCCTGGTGCTTCCACACCCATTCCCTCCTCCATAT...AATGCATTTAGACTCACTTACAACTGTACAGAGAGATATGGTTGTATAAAGAGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101395.3 |
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| CDS-3UTR CAA 90 bp | GGAAGGTTAGAAAGCTGGGAAGCTGGGAACCGGCCTGCTTCTTCTGCATACAAGGTGTGGGCTGTGAGTTaGTGCTTTCCCAGGCGGGCC | + |
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Preference number: 5 (lower is better) Translates to: GRLESWEAGNRPASSAYKVWAVS*CFPRRA Trigger: GGCCCGCCTGGGAAAGCACAAACTCACAGCCCACAC...CTTGTATGCAGAAGAAGCAGGCCGGTTCCCAGCTTCCCAGCTTTCTAACCTTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101395.3 |
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| CDS-3UTR CAA 90 bp | GGAAGGTTAGAAAGCTGGGAAGCTGGGAACCGGCCTGCTTCTTCTGCATACAAGCTCCAGTTCCAAGACTaGCTGCCGGGTATAGGCGGT | + |
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Preference number: 5 (lower is better) Translates to: GRLESWEAGNRPASSAYKLQFQD*LPGIGG Trigger: ACCGCCTATACCCGGCAGCAAGTCTTGGAACTGGAG...CTTGTATGCAGAAGAAGCAGGCCGGTTCCCAGCTTCCCAGCTTTCTAACCTTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101395.3 |
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| CDS-3UTR CAA 90 bp | GTCGATGGCCAGTGCTTTCTTACAGGTGTCCAATCCTGGCAAAGTTGTCCAGGTGGGGCCGAGGCAGTGTaGGAAGATCGCATCTTGGTG | + |
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Preference number: 5 (lower is better) Translates to: VDGQCFLTGVQSWQSCPGGAEAV*EDRILV Trigger: CACCAAGATGCGATCTTCCAACACTGCCTCGGCCCC...ACCTGGACAACTTTGCCAGGATTGGACACCTGTAAGAAAGCACTGGCCATCGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101395.3 |
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| CDS GCA 72 bp | CCGCCCACGGCGCCGTCCCCACCGCCCGGGCCACCGTaGGGGGCGAACTCCTCGAAAGGAGGGAACTTGGGC | + |
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Preference number: 6 (lower is better) Translates to: PPTAPSPPPGPP*GANSSKGGNLG Trigger: GCCCAAGTTCCCTCCTTTCGAGGAGTTCGCCCCGCACGGTGGCCCGGGCGGTGGGGACGGCGCCGTGGGCGG 76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000101395.3 |
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