Pregenerated sensors for HOXA3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079560Ensembl transcript IDs: ENSMUST00000114434.9
Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GTGGTGGTAAATGTTGCTACTGATACTGACAGCCTTTCCAGCAACCAAGATTGCGGTGGGCAACTCTCCTaGCTCACAGCCCTGGGCCCA | + |
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Preference number: 2 (lower is better) Translates to: VVVNVATDTDSLSSNQDCGGQLS*LTALGP Trigger: TGGGCCCAGGGCTGTGAGCCAGGAGAGTTGCCCACC...GCAATCTTGGTTGCTGGAAAGGCTGTCAGTATCAGTAGCAACATTTACCACCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| 3UTR-3UTR TCA 90 bp | AACCACTATTTTCAAACTCTGGGTCCTCTCTGTTCTTATTGCATTGCTACGGTTATGCCAATACACCATTaGACAAAAGGCTCAAGAAAC | + |
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Preference number: 2 (lower is better) Translates to: NHYFQTLGPLCSYCIATVMPIHH*TKGSRN Trigger: GTTTCTTGAGCCTTTTGTTCAATGGTGTATTGGCAT...AACCGTAGCAATGCAATAAGAACAGAGAGGACCCAGAGTTTGAAAATAGTGGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| 3UTR-3UTR CAA 90 bp | ACCACTATTTTCAAACTCTGGGTCCTCTCTGTTCTTATTGCATTGCTACGGTTTTGTTTCAAAGCGCCTTaGATTTCTTTTTCTCGATCA | + |
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Preference number: 3 (lower is better) Translates to: TTIFKLWVLSVLIALLRFCFKAP*ISFSRS Trigger: TGATCGAGAAAAAGAAATCAAAGGCGCTTTGAAACA...AAACCGTAGCAATGCAATAAGAACAGAGAGGACCCAGAGTTTGAAAATAGTGGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS-3UTR TCA 90 bp | ACCACTATTTTCAAACTCTGGGTCCTCTCTGTTCTTATTGCATTGCTACGGTTTGGTGCCCCCTGCGCCTaGCCCCGCCGCTGTGTAGCG | + |
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Preference number: 4 (lower is better) Translates to: TTIFKLWVLSVLIALLRFGAPCA*PRRCVA Trigger: CGCTACACAGCGGCGGGGTCAGGCGCAGGGGGCACC...AAACCGTAGCAATGCAATAAGAACAGAGAGGACCCAGAGTTTGAAAATAGTGGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS-3UTR GCA 90 bp | GTGGTGGTAAATGTTGCTACTGATACTGACAGCCTTTCCAGCAACCAAGATTGCTGCCCAGCGGCCCAGTaGCCCCGTAGTCCATGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: VVVNVATDTDSLSSNQDCCPAAQ*PRSPWQ Trigger: CTGCCATGGACTACGGGGGCACTGGGCCGCTGGGCA...GCAATCTTGGTTGCTGGAAAGGCTGTCAGTATCAGTAGCAACATTTACCACCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS-3UTR TCA 90 bp | AACCACTATTTTCAAACTCTGGGTCCTCTCTGTTCTTATTGCATTGCTACGGTTCCCAGGCCTGGGGGCTaGCTAGGAGGGCCGCTCAGG | + |
|
Preference number: 4 (lower is better) Translates to: NHYFQTLGPLCSYCIATVPRPGG*LGGPLR Trigger: CCTGAGCGGCCCTCCTAGTCAGCCCCCAGGCCTGGG...AACCGTAGCAATGCAATAAGAACAGAGAGGACCCAGAGTTTGAAAATAGTGGTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS-3UTR CCA 90 bp | AACCACTATTTTCAAACTCTGGGTCCTCTCTGTTCTTATTGCATTGCTACGGTTGGTGGCCCCCAGCGCTaGCGGGAGACTGGAGGGAGC | + |
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Preference number: 4 (lower is better) Translates to: NHYFQTLGPLCSYCIATVGGPQR*RETGGS Trigger: GCTCCCTCCAGTCTCCCGCCAGCGCTGGGGGCCACC...AACCGTAGCAATGCAATAAGAACAGAGAGGACCCAGAGTTTGAAAATAGTGGTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS-3UTR CCA 90 bp | ACCACTATTTTCAAACTCTGGGTCCTCTCTGTTCTTATTGCATTGCTACGGTTTCCAGGCCCCGGCCCATaGTGGTGTCCGCTGCCCAGC | + |
|
Preference number: 4 (lower is better) Translates to: TTIFKLWVLSVLIALLRFPGPGP*WCPLPS Trigger: GCTGGGCAGCGGACACCACCATGGGCCGGGGCCTGG...AAACCGTAGCAATGCAATAAGAACAGAGAGGACCCAGAGTTTGAAAATAGTGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS-3UTR CCA 90 bp | GTAAATGTTGCTACTGATACTGACAGCCTTTCCAGCAACCAAGATTGCTACGTCCACAGGGCTCCGACTTaGGGACTGGCCCCCAGACGA | + |
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Preference number: 4 (lower is better) Translates to: VNVATDTDSLSSNQDCYVHRAPT*GLAPRR Trigger: TCGTCTGGGGGCCAGTCCCCAAGTCGGAGCCCTGTG...GACGTAGCAATCTTGGTTGCTGGAAAGGCTGTCAGTATCAGTAGCAACATTTAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS-3UTR GCA 90 bp | GTAAATGTTGCTACTGATACTGACAGCCTTTCCAGCAACCAAGATTGCTACGTCGTGGGGTCCCATAGCTaGCATTGCCCTGCAGGCCGT | + |
|
Preference number: 4 (lower is better) Translates to: VNVATDTDSLSSNQDCYVVGSHS*HCPAGR Trigger: ACGGCCTGCAGGGCAATGGCAGCTATGGGACCCCAC...GACGTAGCAATCTTGGTTGCTGGAAAGGCTGTCAGTATCAGTAGCAACATTTAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS-3UTR CCA 90 bp | AACCACTATTTTCAAACTCTGGGTCCTCTCTGTTCTTATTGCATTGCTACGGTTGCGCTGGCGGGAGACTaGAGGGAGCAGGCAGGTCGA | + |
|
Preference number: 4 (lower is better) Translates to: NHYFQTLGPLCSYCIATVALAGD*REQAGR Trigger: TCGACCTGCCTGCTCCCTCCAGTCTCCCGCCAGCGC...AACCGTAGCAATGCAATAAGAACAGAGAGGACCCAGAGTTTGAAAATAGTGGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS-3UTR CCA 90 bp | GTGGTGGTAAATGTTGCTACTGATACTGACAGCCTTTCCAGCAACCAAGATTGCCGCCTTGGGGAGGCTTaGAGAAAGGAGGGGGTGACT | + |
|
Preference number: 4 (lower is better) Translates to: VVVNVATDTDSLSSNQDCRLGEA*RKEGVT Trigger: AGTCACCCCCTCCTTTCTCCAAGCCTCCCCAAGGCG...GCAATCTTGGTTGCTGGAAAGGCTGTCAGTATCAGTAGCAACATTTACCACCAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS-3UTR CCA 90 bp | GTGGTGGTAAATGTTGCTACTGATACTGACAGCCTTTCCAGCAACCAAGATTGCCCATGGCAGCCGAGGTaGTGTGGGGGAGGTGAGTTA | + |
|
Preference number: 4 (lower is better) Translates to: VVVNVATDTDSLSSNQDCPWQPR*CGGGEL Trigger: TAACTCACCTCCCCCACACCACCTCGGCTGCCATGG...GCAATCTTGGTTGCTGGAAAGGCTGTCAGTATCAGTAGCAACATTTACCACCAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS-3UTR TCA 90 bp | GTAAATGTTGCTACTGATACTGACAGCCTTTCCAGCAACCAAGATTGCTACGTCGCCACCGTAGATCGCTaGGCTGTCGTAGTAGGTCGC | + |
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Preference number: 4 (lower is better) Translates to: VNVATDTDSLSSNQDCYVATVDR*AVVVGR Trigger: GCGACCTACTACGACAGCTCAGCGATCTACGGTGGC...GACGTAGCAATCTTGGTTGCTGGAAAGGCTGTCAGTATCAGTAGCAACATTTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS-3UTR TCA 90 bp | ACCACTATTTTCAAACTCTGGGTCCTCTCTGTTCTTATTGCATTGCTACGGTTTAGCGCAGCTCTCCCCTaGGCTGGAGCCGCTGGTTTT | + |
|
Preference number: 4 (lower is better) Translates to: TTIFKLWVLSVLIALLRFSAALP*AGAAGF Trigger: AAAACCAGCGGCTCCAGCTCAGGGGAGAGCTGCGCT...AAACCGTAGCAATGCAATAAGAACAGAGAGGACCCAGAGTTTGAAAATAGTGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS-3UTR GCA 90 bp | GTAAATGTTGCTACTGATACTGACAGCCTTTCCAGCAACCAAGATTGCTACGTCAGCGAACCCATTGGCTaGTTGGTAGGGGTAGCCACC | + |
|
Preference number: 4 (lower is better) Translates to: VNVATDTDSLSSNQDCYVSEPIG*LVGVAT Trigger: GGTGGCTACCCCTACCAAGCAGCCAATGGGTTCGCT...GACGTAGCAATCTTGGTTGCTGGAAAGGCTGTCAGTATCAGTAGCAACATTTAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS-3UTR GCA 90 bp | GTAAATGTTGCTACTGATACTGACAGCCTTTCCAGCAACCAAGATTGCTACGTCATTCAGATAGCCTCCTaGACCGGGAGGCACAGGGCT | + |
|
Preference number: 4 (lower is better) Translates to: VNVATDTDSLSSNQDCYVIQIAS*TGRHRA Trigger: AGCCCTGTGCCTCCCGGTGCAGGAGGCTATCTGAAT...GACGTAGCAATCTTGGTTGCTGGAAAGGCTGTCAGTATCAGTAGCAACATTTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS-3UTR GCA 90 bp | ACCACTATTTTCAAACTCTGGGTCCTCTCTGTTCTTATTGCATTGCTACGGTTTTGGGCTCCACATAGCTaGCCCCTACGAAGACGGGGC | + |
|
Preference number: 4 (lower is better) Translates to: TTIFKLWVLSVLIALLRFWAPHS*PLRRRG Trigger: GCCCCGTCTTCGTAGGGGGCAGCTATGTGGAGCCCA...AAACCGTAGCAATGCAATAAGAACAGAGAGGACCCAGAGTTTGAAAATAGTGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS-3UTR CCA 90 bp | AACCACTATTTTCAAACTCTGGGTCCTCTCTGTTCTTATTGCATTGCTACGGTTAGGTGGAGGCAAAGGTaGTTCACCCAGGCCTGGGGG | + |
|
Preference number: 4 (lower is better) Translates to: NHYFQTLGPLCSYCIATVRWRQR*FTQAWG Trigger: CCCCCAGGCCTGGGTGAACCACCTTTGCCTCCACCT...AACCGTAGCAATGCAATAAGAACAGAGAGGACCCAGAGTTTGAAAATAGTGGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS-3UTR CCA 90 bp | GTAAATGTTGCTACTGATACTGACAGCCTTTCCAGCAACCAAGATTGCTACGTCAGCTCTCCCCTGAGCTaGAGCCGCTGGTTTTCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: VNVATDTDSLSSNQDCYVSSPLS*SRWFSA Trigger: AGCAGAAAACCAGCGGCTCCAGCTCAGGGGAGAGCT...GACGTAGCAATCTTGGTTGCTGGAAAGGCTGTCAGTATCAGTAGCAACATTTAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS-3UTR TCA 90 bp | ACCACTATTTTCAAACTCTGGGTCCTCTCTGTTCTTATTGCATTGCTACGGTTTGGAGAAAGGAGGGGGTaGCTGGGGCTCATATGGGAC | + |
|
Preference number: 4 (lower is better) Translates to: TTIFKLWVLSVLIALLRFGERRG*LGLIWD Trigger: GTCCCATATGAGCCCCAGTCACCCCCTCCTTTCTCC...AAACCGTAGCAATGCAATAAGAACAGAGAGGACCCAGAGTTTGAAAATAGTGGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS-3UTR TCA 90 bp | AACCACTATTTTCAAACTCTGGGTCCTCTCTGTTCTTATTGCATTGCTACGGTTGTGGTGTGGGGGAGGTaGGTTAGGCCAAAGAGTGGC | + |
|
Preference number: 4 (lower is better) Translates to: NHYFQTLGPLCSYCIATVVVWGR*VRPKSG Trigger: GCCACTCTTTGGCCTAACTCACCTCCCCCACACCAC...AACCGTAGCAATGCAATAAGAACAGAGAGGACCCAGAGTTTGAAAATAGTGGTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS-3UTR CCA 90 bp | ACCACTATTTTCAAACTCTGGGTCCTCTCTGTTCTTATTGCATTGCTACGGTTTTGCCTGGGGAGGAGGTaGAGGCAAAGGTGGTTCACC | + |
|
Preference number: 4 (lower is better) Translates to: TTIFKLWVLSVLIALLRFCLGRR*RQRWFT Trigger: GGTGAACCACCTTTGCCTCCACCTCCTCCCCAGGCA...AAACCGTAGCAATGCAATAAGAACAGAGAGGACCCAGAGTTTGAAAATAGTGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS-3UTR CCA 90 bp | ACCACTATTTTCAAACTCTGGGTCCTCTCTGTTCTTATTGCATTGCTACGGTTTTGTGTAGCGTTTCTGTaGGGGAGGTGGGGGAGCGCA | + |
|
Preference number: 4 (lower is better) Translates to: TTIFKLWVLSVLIALLRFCVAFL*GRWGSA Trigger: TGCGCTCCCCCACCTCCCCCACAGAAACGCTACACA...AAACCGTAGCAATGCAATAAGAACAGAGAGGACCCAGAGTTTGAAAATAGTGGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS-3UTR CCA 90 bp | AACCACTATTTTCAAACTCTGGGTCCTCTCTGTTCTTATTGCATTGCTACGGTTGCCCAGAGTTGCTCATaGGCTCCACATAGCTGCCCC | + |
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Preference number: 4 (lower is better) Translates to: NHYFQTLGPLCSYCIATVAQSCS*APHSCP Trigger: GGGGCAGCTATGTGGAGCCCATGAGCAACTCTGGGC...AACCGTAGCAATGCAATAAGAACAGAGAGGACCCAGAGTTTGAAAATAGTGGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS-3UTR GCA 90 bp | AACCACTATTTTCAAACTCTGGGTCCTCTCTGTTCTTATTGCATTGCTACGGTTTCCCATAGCTGCCATTaGCCTGCAGGCCGTGAGCAT | + |
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Preference number: 4 (lower is better) Translates to: NHYFQTLGPLCSYCIATVSHSCH*PAGREH Trigger: ATGCTCACGGCCTGCAGGGCAATGGCAGCTATGGGA...AACCGTAGCAATGCAATAAGAACAGAGAGGACCCAGAGTTTGAAAATAGTGGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS-3UTR GCA 90 bp | GTAAATGTTGCTACTGATACTGACAGCCTTTCCAGCAACCAAGATTGCTACGTCGAGCCGCTGGTTTTCTaGTTAGTGTTCTGCCTTGAC | + |
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Preference number: 4 (lower is better) Translates to: VNVATDTDSLSSNQDCYVEPLVF*LVFCLD Trigger: GTCAAGGCAGAACACTAAGCAGAAAACCAGCGGCTC...GACGTAGCAATCTTGGTTGCTGGAAAGGCTGTCAGTATCAGTAGCAACATTTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS-3UTR GCA 90 bp | AACCACTATTTTCAAACTCTGGGTCCTCTCTGTTCTTATTGCATTGCTACGGTTAGAGTGGCCCAGAGTTaGTCATGGGCTCCACATAGC | + |
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Preference number: 4 (lower is better) Translates to: NHYFQTLGPLCSYCIATVRVAQS*SWAPHS Trigger: GCTATGTGGAGCCCATGAGCAACTCTGGGCCACTCT...AACCGTAGCAATGCAATAAGAACAGAGAGGACCCAGAGTTTGAAAATAGTGGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS-3UTR CCA 90 bp | AACCACTATTTTCAAACTCTGGGTCCTCTCTGTTCTTATTGCATTGCTACGGTTCGTATGGCTGCTGACTaGCATTGTAAGCGAACCCAT | + |
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Preference number: 4 (lower is better) Translates to: NHYFQTLGPLCSYCIATVRMAAD*HCKRTH Trigger: ATGGGTTCGCTTACAATGCCAGTCAGCAGCCATACG...AACCGTAGCAATGCAATAAGAACAGAGAGGACCCAGAGTTTGAAAATAGTGGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS CCA 90 bp | TGGCCCCCAGCGCTGGCGGGAGACTGGAGGGAGCAGGCAGGTCGATaGTACTCAACGCCATCGGTGCCCAGAGCGGCGGACGGCGCGTAT | + |
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Preference number: 5 (lower is better) Translates to: WPPALAGDWREQAGR*YSTPSVPRAADGAY Trigger: ATACGCGCCGTCCGCCGCTCTGGGCACCGATGGCGTTGAGTACCATCGACCTGCCTGCTCCCTCCAGTCTCCCGCCAGCGCTGGGGGCCA 70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS CCA 90 bp | CGCTGCCCAGCGGCCCAGTGCCCCCGTAGTCCATGGCAGCCGAGGTaGTGTGGGGGAGGTGAGTTAGGCCAAAGAGTGGCCCAGAGTTGC | + |
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Preference number: 5 (lower is better) Translates to: RCPAAQCPRSPWQPR*CGGGELGQRVAQSC Trigger: GCAACTCTGGGCCACTCTTTGGCCTAACTCACCTCCCCCACACCACCTCGGCTGCCATGGACTACGGGGGCACTGGGCCGCTGGGCAGCG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS TCA 90 bp | TGGGGAGGAGGTGGAGGCAAAGGTGGTTCACCCAGGCCTGGGGGCTaGCTAGGAGGGCCGCTCAGGGTGCGCAGACAAGCTTCGCTCAGC | + |
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Preference number: 5 (lower is better) Translates to: WGGGGGKGGSPRPGG*LGGPLRVRRQASLS Trigger: GCTGAGCGAAGCTTGTCTGCGCACCCTGAGCGGCCCTCCTAGTCAGCCCCCAGGCCTGGGTGAACCACCTTTGCCTCCACCTCCTCCCCA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS CCA 90 bp | CATGGTGGTGTCCGCTGCCCAGCGGCCCAGTGCCCCCGTAGTCCATaGCAGCCGAGGTGGTGTGGGGGAGGTGAGTTAGGCCAAAGAGTG | + |
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Preference number: 5 (lower is better) Translates to: HGGVRCPAAQCPRSP*QPRWCGGGELGQRV Trigger: CACTCTTTGGCCTAACTCACCTCCCCCACACCACCTCGGCTGCCATGGACTACGGGGGCACTGGGCCGCTGGGCAGCGGACACCACCATG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS GCA 90 bp | GAGACTGGAGGGAGCAGGCAGGTCGATGGTACTCAACGCCATCGGTaGCCAGAGCGGCGGACGGCGCGTATGGCTGCTGACTGGCATTGT | + |
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Preference number: 5 (lower is better) Translates to: ETGGSRQVDGTQRHR*PERRTARMAADWHC Trigger: ACAATGCCAGTCAGCAGCCATACGCGCCGTCCGCCGCTCTGGGCACCGATGGCGTTGAGTACCATCGACCTGCCTGCTCCCTCCAGTCTC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS CCA 90 bp | CGCCATCGGTGCCCAGAGCGGCGGACGGCGCGTATGGCTGCTGACTaGCATTGTAAGCGAACCCATTGGCTGCTTGGTAGGGGTAGCCAC | + |
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Preference number: 5 (lower is better) Translates to: RHRCPERRTARMAAD*HCKRTHWLLGRGSH Trigger: GTGGCTACCCCTACCAAGCAGCCAATGGGTTCGCTTACAATGCCAGTCAGCAGCCATACGCGCCGTCCGCCGCTCTGGGCACCGATGGCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS CCA 90 bp | AGAATTCAGATAGCCTCCTGCACCGGGAGGCACAGGGCTCCGACTTaGGGACTGGCCCCCAGACGAGGTCAGCATGCCTTTGCCCTTCTG | + |
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Preference number: 5 (lower is better) Translates to: RIQIASCTGRHRAPT*GLAPRRGQHAFALL Trigger: CAGAAGGGCAAAGGCATGCTGACCTCGTCTGGGGGCCAGTCCCCAAGTCGGAGCCCTGTGCCTCCCGGTGCAGGAGGCTATCTGAATTCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS GCA 90 bp | TGGGACACTGTTGACCAGCGAATGCATAGAATTCAGATAGCCTCCTaGACCGGGAGGCACAGGGCTCCGACTTGGGGACTGGCCCCCAGA | + |
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Preference number: 5 (lower is better) Translates to: WDTVDQRMHRIQIAS*TGRHRAPTWGLAPR Trigger: TCTGGGGGCCAGTCCCCAAGTCGGAGCCCTGTGCCTCCCGGTGCAGGAGGCTATCTGAATTCTATGCATTCGCTGGTCAACAGTGTCCCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS CCA 90 bp | CGGACGGCGCGTATGGCTGCTGACTGGCATTGTAAGCGAACCCATTaGCTGCTTGGTAGGGGTAGCCACCGTAGATCGCTGAGCTGTCGT | + |
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Preference number: 5 (lower is better) Translates to: RTARMAADWHCKRTH*LLGRGSHRRSLSCR Trigger: ACGACAGCTCAGCGATCTACGGTGGCTACCCCTACCAAGCAGCCAATGGGTTCGCTTACAATGCCAGTCAGCAGCCATACGCGCCGTCCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS CCA 90 bp | ATGGTACTCAACGCCATCGGTGCCCAGAGCGGCGGACGGCGCGTATaGCTGCTGACTGGCATTGTAAGCGAACCCATTGGCTGCTTGGTA | + |
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Preference number: 5 (lower is better) Translates to: MVLNAIGAQSGGRRV*LLTGIVSEPIGCLV Trigger: TACCAAGCAGCCAATGGGTTCGCTTACAATGCCAGTCAGCAGCCATACGCGCCGTCCGCCGCTCTGGGCACCGATGGCGTTGAGTACCAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS-3UTR CAA 90 bp | AACCACTATTTTCAAACTCTGGGTCCTCTCTGTTCTTATTGCATTGCTACGGTTGCACAGGGCTCCGACTaGGGGACTGGCCCCCAGACG | + |
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Preference number: 5 (lower is better) Translates to: NHYFQTLGPLCSYCIATVAQGSD*GTGPQT Trigger: CGTCTGGGGGCCAGTCCCCAAGTCGGAGCCCTGTGC...AACCGTAGCAATGCAATAAGAACAGAGAGGACCCAGAGTTTGAAAATAGTGGTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS-3UTR CAA 90 bp | AACCACTATTTTCAAACTCTGGGTCCTCTCTGTTCTTATTGCATTGCTACGGTTTGCCCAGGCGGGCTCTaGTCACCAGCGCAGCTCTCC | + |
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Preference number: 5 (lower is better) Translates to: NHYFQTLGPLCSYCIATVCPGGL*SPAQLS Trigger: GGAGAGCTGCGCTGGTGACAAGAGCCCGCCTGGGCA...AACCGTAGCAATGCAATAAGAACAGAGAGGACCCAGAGTTTGAAAATAGTGGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS-3UTR CAA 90 bp | GTGGTGGTAAATGTTGCTACTGATACTGACAGCCTTTCCAGCAACCAAGATTGCGAACCCATTGGCTGCTaGGTAGGGGTAGCCACCGTA | + |
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Preference number: 5 (lower is better) Translates to: VVVNVATDTDSLSSNQDCEPIGC*VGVATV Trigger: TACGGTGGCTACCCCTACCAAGCAGCCAATGGGTTC...GCAATCTTGGTTGCTGGAAAGGCTGTCAGTATCAGTAGCAACATTTACCACCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS-3UTR CAA 90 bp | ACCACTATTTTCAAACTCTGGGTCCTCTCTGTTCTTATTGCATTGCTACGGTTTTTGAGCAGGGGGCTCTaGGCTGTGCTGGCAGGGGTA | + |
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Preference number: 5 (lower is better) Translates to: TTIFKLWVLSVLIALLRFLSRGL*AVLAGV Trigger: TACCCCTGCCAGCACAGCCAAGAGCCCCCTGCTCAA...AAACCGTAGCAATGCAATAAGAACAGAGAGGACCCAGAGTTTGAAAATAGTGGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS-3UTR CAA 90 bp | AACCACTATTTTCAAACTCTGGGTCCTCTCTGTTCTTATTGCATTGCTACGGTTCAACCCATAGGCGCCTaGGGGAGGCTTGGAGAAAGG | + |
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Preference number: 5 (lower is better) Translates to: NHYFQTLGPLCSYCIATVQPIGA*GRLGER Trigger: CCTTTCTCCAAGCCTCCCCAAGGCGCCTATGGGTTG...AACCGTAGCAATGCAATAAGAACAGAGAGGACCCAGAGTTTGAAAATAGTGGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS-3UTR CAA 90 bp | AACCACTATTTTCAAACTCTGGGTCCTCTCTGTTCTTATTGCATTGCTACGGTTGTTGCTGTTGGCACTTaGAGGGGGAGAGACAGACGA | + |
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Preference number: 5 (lower is better) Translates to: NHYFQTLGPLCSYCIATVVAVGT*RGRDRR Trigger: TCGTCTGTCTCTCCCCCTCAAAGTGCCAACAGCAAC...AACCGTAGCAATGCAATAAGAACAGAGAGGACCCAGAGTTTGAAAATAGTGGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS-3UTR CAA 90 bp | AACCACTATTTTCAAACTCTGGGTCCTCTCTGTTCTTATTGCATTGCTACGGTTGAGGTCAGCATGCCTTaGCCCTTCTGGTCTTTCTTG | + |
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Preference number: 5 (lower is better) Translates to: NHYFQTLGPLCSYCIATVEVSMP*PFWSFL Trigger: CAAGAAAGACCAGAAGGGCAAAGGCATGCTGACCTC...AACCGTAGCAATGCAATAAGAACAGAGAGGACCCAGAGTTTGAAAATAGTGGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS-3UTR CAA 90 bp | ACCACTATTTTCAAACTCTGGGTCCTCTCTGTTCTTATTGCATTGCTACGGTTTTCATATGGGACACTGTaGACCAGCGAATGCATAGAA | + |
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Preference number: 5 (lower is better) Translates to: TTIFKLWVLSVLIALLRFSYGTL*TSECIE Trigger: TTCTATGCATTCGCTGGTCAACAGTGTCCCATATGA...AAACCGTAGCAATGCAATAAGAACAGAGAGGACCCAGAGTTTGAAAATAGTGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS GCA 72 bp | CCGGCCCATGGTGGTGTCCGCTGCCCAGCGGCCCAGTaGCCCCGTAGTCCATGGCAGCCGAGGTGGTGTGGG | + |
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Preference number: 6 (lower is better) Translates to: PAHGGVRCPAAQ*PRSPWQPRWCG Trigger: CCCACACCACCTCGGCTGCCATGGACTACGGGGGCACTGGGCCGCTGGGCAGCGGACACCACCATGGGCCGG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS CAA 90 bp | TACGCCGTGCGCGCGCGCTTGGACGAGGCCTGCCCAGGCGGGCTCTaGTCACCAGCGCAGCTCTCCCCTGAGCTGGAGCCGCTGGTTTTC | + |
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Preference number: 6 (lower is better) Translates to: YAVRARLDEACPGGL*SPAQLSPELEPLVF Trigger: GAAAACCAGCGGCTCCAGCTCAGGGGAGAGCTGCGCTGGTGACAAGAGCCCGCCTGGGCAGGCCTCGTCCAAGCGCGCGCGCACGGCGTA 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS GCA 72 bp | GGGAGCAGGCAGGTCGATGGTACTCAACGCCATCGGTaGCCAGAGCGGCGGACGGCGCGTATGGCTGCTGAC | + |
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Preference number: 6 (lower is better) Translates to: GSRQVDGTQRHR*PERRTARMAAD Trigger: GTCAGCAGCCATACGCGCCGTCCGCCGCTCTGGGCACCGATGGCGTTGAGTACCATCGACCTGCCTGCTCCC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS CCA 72 bp | GCGGCCCAGTGCCCCCGTAGTCCATGGCAGCCGAGGTaGTGTGGGGGAGGTGAGTTAGGCCAAAGAGTGGCC | + |
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Preference number: 6 (lower is better) Translates to: AAQCPRSPWQPR*CGGGELGQRVA Trigger: GGCCACTCTTTGGCCTAACTCACCTCCCCCACACCACCTCGGCTGCCATGGACTACGGGGGCACTGGGCCGC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS TCA 72 bp | GGTGGAGGCAAAGGTGGTTCACCCAGGCCTGGGGGCTaGCTAGGAGGGCCGCTCAGGGTGCGCAGACAAGCT | + |
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Preference number: 6 (lower is better) Translates to: GGGKGGSPRPGG*LGGPLRVRRQA Trigger: AGCTTGTCTGCGCACCCTGAGCGGCCCTCCTAGTCAGCCCCCAGGCCTGGGTGAACCACCTTTGCCTCCACC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS CCA 72 bp | GGGTGCGCAGACAAGCTTCGCTCAGCTCATGAGTTTTaGGGTGGCCCCCAGCGCTGGCGGGAGACTGGAGGG | + |
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Preference number: 6 (lower is better) Translates to: GCADKLRSAHEF*GGPQRWRETGG Trigger: CCCTCCAGTCTCCCGCCAGCGCTGGGGGCCACCCCAAAACTCATGAGCTGAGCGAAGCTTGTCTGCGCACCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS GCA 72 bp | AGACGGGGCTTCCCTGTAAGTGTGGGGTCCCATAGCTaGCATTGCCCTGCAGGCCGTGAGCATGCGGGTCGT | + |
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Preference number: 6 (lower is better) Translates to: RRGFPVSVGSHS*HCPAGREHAGR Trigger: ACGACCCGCATGCTCACGGCCTGCAGGGCAATGGCAGCTATGGGACCCCACACTTACAGGGAAGCCCCGTCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS CCA 72 bp | AACGCCATCGGTGCCCAGAGCGGCGGACGGCGCGTATaGCTGCTGACTGGCATTGTAAGCGAACCCATTGGC | + |
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Preference number: 6 (lower is better) Translates to: NAIGAQSGGRRV*LLTGIVSEPIG Trigger: GCCAATGGGTTCGCTTACAATGCCAGTCAGCAGCCATACGCGCCGTCCGCCGCTCTGGGCACCGATGGCGTT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS GCA 72 bp | GGCTTCCCTGTAAGTGTGGGGTCCCATAGCTGCCATTaGCCTGCAGGCCGTGAGCATGCGGGTCGTAGTCAG | + |
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Preference number: 6 (lower is better) Translates to: GFPVSVGSHSCH*PAGREHAGRSQ Trigger: CTGACTACGACCCGCATGCTCACGGCCTGCAGGGCAATGGCAGCTATGGGACCCCACACTTACAGGGAAGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS CCA 72 bp | TGCCCAGAGCGGCGGACGGCGCGTATGGCTGCTGACTaGCATTGTAAGCGAACCCATTGGCTGCTTGGTAGG | + |
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Preference number: 6 (lower is better) Translates to: CPERRTARMAAD*HCKRTHWLLGR Trigger: CCTACCAAGCAGCCAATGGGTTCGCTTACAATGCCAGTCAGCAGCCATACGCGCCGTCCGCCGCTCTGGGCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS CCA 72 bp | GCGCCTTGGGGAGGCTTGGAGAAAGGAGGGGGTGACTaGGGCTCATATGGGACACTGTTGACCAGCGAATGC | + |
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Preference number: 6 (lower is better) Translates to: APWGGLEKGGGD*GSYGTLLTSEC Trigger: GCATTCGCTGGTCAACAGTGTCCCATATGAGCCCCAGTCACCCCCTCCTTTCTCCAAGCCTCCCCAAGGCGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS GCA 72 bp | AGAGTGGCCCAGAGTTGCTCATGGGCTCCACATAGCTaGCCCCTACGAAGACGGGGCTTCCCTGTAAGTGTG | + |
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Preference number: 6 (lower is better) Translates to: RVAQSCSWAPHS*PLRRRGFPVSV Trigger: CACACTTACAGGGAAGCCCCGTCTTCGTAGGGGGCAGCTATGTGGAGCCCATGAGCAACTCTGGGCCACTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS GCA 72 bp | GTTGACCAGCGAATGCATAGAATTCAGATAGCCTCCTaGACCGGGAGGCACAGGGCTCCGACTTGGGGACTG | + |
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Preference number: 6 (lower is better) Translates to: VDQRMHRIQIAS*TGRHRAPTWGL Trigger: CAGTCCCCAAGTCGGAGCCCTGTGCCTCCCGGTGCAGGAGGCTATCTGAATTCTATGCATTCGCTGGTCAAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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| CDS CCA 72 bp | CGTATGGCTGCTGACTGGCATTGTAAGCGAACCCATTaGCTGCTTGGTAGGGGTAGCCACCGTAGATCGCTG | + |
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Preference number: 6 (lower is better) Translates to: RMAADWHCKRTH*LLGRGSHRRSL Trigger: CAGCGATCTACGGTGGCTACCCCTACCAAGCAGCCAATGGGTTCGCTTACAATGCCAGTCAGCAGCCATACG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114434.9 |
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