RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HOXA2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000014704

Ensembl transcript IDs: ENSMUST00000014848.11

Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR TCA 90 bp TTGCAAGAGATGGCTTTAAAACTGTGTCAGGGGAGAACATTAAACGGAAAGTCCGCGCCGTGGCGAGGGTaGCTGCCCGGGTTCAGGCTG +
Preference number: 4 (lower is better)
Translates to: LQEMALKLCQGRTLNGKSAPWRG*LPGFRL
Trigger: CAGCCTGAACCCGGGCAGTCACCCTCGCCACGGCGC...GGACTTTCCGTTTAATGTTCTCCCCTGACACAGTTTTAAAGCCATCTCTTGCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS-3UTR GCA 90 bp AACGGAAAGTCCTCAACATTTGAGAGAGTAGGGGTAGATCAAGAAGAAACTAAAGGATACTCAGGCGGCTaGAGGGCGCCGGCAGGCACC +
Preference number: 4 (lower is better)
Translates to: NGKSSTFERVGVDQEETKGYSGG*RAPAGT
Trigger: GGTGCCTGCCGGCGCCCTGCAGCCGCCTGAGTATCC...TTTAGTTTCTTCTTGATCTACCCCTACTCTCTCAAATGTTGAGGACTTTCCGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS-3UTR GCA 90 bp TTAAACGGAAAGTCCTCAACATTTGAGAGAGTAGGGGTAGATCAAGAAGAAACTCGTGGCGAGGGTGACTaGCCGGGTTCAGGCTGGGAA +
Preference number: 4 (lower is better)
Translates to: LNGKSSTFERVGVDQEETRGEGD*PGSGWE
Trigger: TTCCCAGCCTGAACCCGGGCAGTCACCCTCGCCACG...AGTTTCTTCTTGATCTACCCCTACTCTCTCAAATGTTGAGGACTTTCCGTTTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS-3UTR CCA 90 bp TTAAACGGAAAGTCCTCAACATTTGAGAGAGTAGGGGTAGATCAAGAAGAAACTCGGTTCTCAGACGCCTaGATCCCCCGCCGCTGCCAT +
Preference number: 4 (lower is better)
Translates to: LNGKSSTFERVGVDQEETRFSDA*IPRRCH
Trigger: ATGGCAGCGGCGGGGGATCCAGGCGTCTGAGAACCG...AGTTTCTTCTTGATCTACCCCTACTCTCTCAAATGTTGAGGACTTTCCGTTTAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS-3UTR TCA 90 bp TTGCAAGAGATGGCTTTAAAACTGTGTCAGGGGAGAACATTAAACGGAAAGTCCGGGCGACAGTGCATCTaGAAGCTGCAGGCAGGAATC +
Preference number: 4 (lower is better)
Translates to: LQEMALKLCQGRTLNGKSGRQCI*KLQAGI
Trigger: GATTCCTGCCTGCAGCTTTCAGATGCACTGTCGCCC...GGACTTTCCGTTTAATGTTCTCCCCTGACACAGTTTTAAAGCCATCTCTTGCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS-3UTR GCA 90 bp TTGCAAGAGATGGCTTTAAAACTGTGTCAGGGGAGAACATTAAACGGAAAGTCCCGGCGATTTCCACCCTaGGGGGTCTGCAAAGGTACT +
Preference number: 4 (lower is better)
Translates to: LQEMALKLCQGRTLNGKSRRFPP*GVCKGT
Trigger: AGTACCTTTGCAGACCCCGCAGGGTGGAAATCGCCG...GGACTTTCCGTTTAATGTTCTCCCCTGACACAGTTTTAAAGCCATCTCTTGCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS-3UTR TCA 90 bp TGTAAAAACCACTTAGAACGCCAACATAATTTGCAAGAGATGGCTTTAAAACTGGGGCCCCGGAGACACTaGGGGCTTGCTCAAAGAGTG +
Preference number: 4 (lower is better)
Translates to: CKNHLERQHNLQEMALKLGPRRH*GLAQRV
Trigger: CACTCTTTGAGCAAGCCCTCAGTGTCTCCGGGGCCC...CAGTTTTAAAGCCATCTCTTGCAAATTATGTTGGCGTTCTAAGTGGTTTTTACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS-3UTR GCA 90 bp TGTAAAAACCACTTAGAACGCCAACATAATTTGCAAGAGATGGCTTTAAAACTGTGGATCCCCCGCCGCTaGCATCAGCTATTTCCAGGG +
Preference number: 4 (lower is better)
Translates to: CKNHLERQHNLQEMALKLWIPRR*HQLFPG
Trigger: CCCTGGAAATAGCTGATGGCAGCGGCGGGGGATCCA...CAGTTTTAAAGCCATCTCTTGCAAATTATGTTGGCGTTCTAAGTGGTTTTTACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS-3UTR CCA 90 bp TTAAACGGAAAGTCCTCAACATTTGAGAGAGTAGGGGTAGATCAAGAAGAAACTGCAGCGCGGTTTTCTTaGCCGCCTTCTTCTCCTTCA +
Preference number: 4 (lower is better)
Translates to: LNGKSSTFERVGVDQEETAARFS*PPSSPS
Trigger: TGAAGGAGAAGAAGGCGGCCAAGAAAACCGCGCTGC...AGTTTCTTCTTGATCTACCCCTACTCTCTCAAATGTTGAGGACTTTCCGTTTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS-3UTR TCA 90 bp TTAAACGGAAAGTCCTCAACATTTGAGAGAGTAGGGGTAGATCAAGAAGAAACTTCCAGCTCCAAAAGCTaGGTGTTGGTGTACGCGGTT +
Preference number: 4 (lower is better)
Translates to: LNGKSSTFERVGVDQEETSSSKS*VLVYAV
Trigger: AACCGCGTACACCAACACTCAGCTTTTGGAGCTGGA...AGTTTCTTCTTGATCTACCCCTACTCTCTCAAATGTTGAGGACTTTCCGTTTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS-3UTR TCA 90 bp TTGCAAGAGATGGCTTTAAAACTGTGTCAGGGGAGAACATTAAACGGAAAGTCCGTCAAAGCTGTCAGCTaGGATATCTACAGGACTGTC +
Preference number: 4 (lower is better)
Translates to: LQEMALKLCQGRTLNGKSVKAVS*DIYRTV
Trigger: GACAGTCCTGTAGATATCTCAGCTGACAGCTTTGAC...GGACTTTCCGTTTAATGTTCTCCCCTGACACAGTTTTAAAGCCATCTCTTGCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS-3UTR CCA 90 bp AACGGAAAGTCCTCAACATTTGAGAGAGTAGGGGTAGATCAAGAAGAAACTAAACGCCATTGTGTCCATTaGGAGCCTGCTGTTGAGAGA +
Preference number: 4 (lower is better)
Translates to: NGKSSTFERVGVDQEETKRHCVH*EPAVER
Trigger: TCTCTCAACAGCAGGCTCCCAATGGACACAATGGCG...TTTAGTTTCTTCTTGATCTACCCCTACTCTCTCAAATGTTGAGGACTTTCCGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS-3UTR CCA 90 bp TTGCAAGAGATGGCTTTAAAACTGTGTCAGGGGAGAACATTAAACGGAAAGTCCGAAACTGGGAAAGTTTaGGAGTCGCCATTGTGTCCA +
Preference number: 4 (lower is better)
Translates to: LQEMALKLCQGRTLNGKSETGKV*ESPLCP
Trigger: TGGACACAATGGCGACTCCCAAACTTTCCCAGTTTC...GGACTTTCCGTTTAATGTTCTCCCCTGACACAGTTTTAAAGCCATCTCTTGCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS-3UTR CCA 90 bp AACGGAAAGTCCTCAACATTTGAGAGAGTAGGGGTAGATCAAGAAGAAACTAAACCAGCTCCACAGTTCTaGCCCATTGTTGACAAGCAG +
Preference number: 4 (lower is better)
Translates to: NGKSSTFERVGVDQEETKPAPQF*PIVDKQ
Trigger: CTGCTTGTCAACAATGGGCCAGAACTGTGGAGCTGG...TTTAGTTTCTTCTTGATCTACCCCTACTCTCTCAAATGTTGAGGACTTTCCGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS-3UTR TCA 90 bp AACGGAAAGTCCTCAACATTTGAGAGAGTAGGGGTAGATCAAGAAGAAACTAAAGGCTTGCTCAAAGAGTaGCTTCTCTTCCTCGTCTTC +
Preference number: 4 (lower is better)
Translates to: NGKSSTFERVGVDQEETKGLLKE*LLFLVF
Trigger: GAAGACGAGGAAGAGAAGTCACTCTTTGAGCAAGCC...TTTAGTTTCTTCTTGATCTACCCCTACTCTCTCAAATGTTGAGGACTTTCCGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS-3UTR GCA 90 bp AACGGAAAGTCCTCAACATTTGAGAGAGTAGGGGTAGATCAAGAAGAAACTAAAAGTGCATCTGAAAGCTaGAGGCAGGAATCTGTGGAG +
Preference number: 4 (lower is better)
Translates to: NGKSSTFERVGVDQEETKSASES*RQESVE
Trigger: CTCCACAGATTCCTGCCTGCAGCTTTCAGATGCACT...TTTAGTTTCTTCTTGATCTACCCCTACTCTCTCAAATGTTGAGGACTTTCCGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS-3UTR CCA 90 bp TGTAAAAACCACTTAGAACGCCAACATAATTTGCAAGAGATGGCTTTAAAACTGAAGAGGGGACCTCGATaGCCTCGGGACTGTCATTGT +
Preference number: 4 (lower is better)
Translates to: CKNHLERQHNLQEMALKLKRGPR*PRDCHC
Trigger: ACAATGACAGTCCCGAGGCCATCGAGGTCCCCTCTT...CAGTTTTAAAGCCATCTCTTGCAAATTATGTTGGCGTTCTAAGTGGTTTTTACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS-3UTR TCA 90 bp TTAAACGGAAAGTCCTCAACATTTGAGAGAGTAGGGGTAGATCAAGAAGAAACTAATCAGTGTCGAGTGTaGAAGCGTCGAGGTCTTGAT +
Preference number: 4 (lower is better)
Translates to: LNGKSSTFERVGVDQEETNQCRV*KRRGLD
Trigger: ATCAAGACCTCGACGCTTTCACACTCGACACTGATT...AGTTTCTTCTTGATCTACCCCTACTCTCTCAAATGTTGAGGACTTTCCGTTTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS-3UTR CCA 90 bp TTAAACGGAAAGTCCTCAACATTTGAGAGAGTAGGGGTAGATCAAGAAGAAACTTTCCCTTCGCTGTTTTaGTTCTCCTTGCACTGGGTT +
Preference number: 4 (lower is better)
Translates to: LNGKSSTFERVGVDQEETFPSLF*FSLHWV
Trigger: AACCCAGTGCAAGGAGAACCAAAACAGCGAAGGGAA...AGTTTCTTCTTGATCTACCCCTACTCTCTCAAATGTTGAGGACTTTCCGTTTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS-3UTR TCA 90 bp TTGCAAGAGATGGCTTTAAAACTGTGTCAGGGGAGAACATTAAACGGAAAGTCCAAAGCGTCGAGGTCTTaGTTGATGAACTTTGAAATG +
Preference number: 4 (lower is better)
Translates to: LQEMALKLCQGRTLNGKSKASRS*LMNFEM
Trigger: CATTTCAAAGTTCATCAATCAAGACCTCGACGCTTT...GGACTTTCCGTTTAATGTTCTCCCCTGACACAGTTTTAAAGCCATCTCTTGCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS-3UTR TCA 90 bp ATGGCTTTAAAACTGTGTCAGGGGAGAACATTAAACGGAAAGTCCTCAACATTTGTTAGGAACAGTGGGTaGCTGGTGCTGAAAATGTTT +
Preference number: 4 (lower is better)
Translates to: MALKLCQGRTLNGKSSTFVRNSG*LVLKMF
Trigger: AAACATTTTCAGCACCAGTCACCCACTGTTCCTAAC...AAATGTTGAGGACTTTCCGTTTAATGTTCTCCCCTGACACAGTTTTAAAGCCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS-3UTR GCA 90 bp ATGGCTTTAAAACTGTGTCAGGGGAGAACATTAAACGGAAAGTCCTCAACATTTTCCTTGCACTGGGTTTaGCTCTTATGCTTCATTCTC +
Preference number: 4 (lower is better)
Translates to: MALKLCQGRTLNGKSSTFSLHWV*LLCFIL
Trigger: GAGAATGAAGCATAAGAGGCAAACCCAGTGCAAGGA...AAATGTTGAGGACTTTCCGTTTAATGTTCTCCCCTGACACAGTTTTAAAGCCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS-3UTR GCA 90 bp ATGGCTTTAAAACTGTGTCAGGGGAGAACATTAAACGGAAAGTCCTCAACATTTAAAACATTGAAGTCCTaGAAAGAGGGGACCTCGATG +
Preference number: 4 (lower is better)
Translates to: MALKLCQGRTLNGKSSTFKTLKS*KEGTSM
Trigger: CATCGAGGTCCCCTCTTTGCAGGACTTCAATGTTTT...AAATGTTGAGGACTTTCCGTTTAATGTTCTCCCCTGACACAGTTTTAAAGCCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS-3UTR TCA 90 bp TGTAAAAACCACTTAGAACGCCAACATAATTTGCAAGAGATGGCTTTAAAACTGGTTCTGGCCCATTGTTaGCAAGCAGTTAGGAACAGT +
Preference number: 4 (lower is better)
Translates to: CKNHLERQHNLQEMALKLVLAHC*QAVRNS
Trigger: ACTGTTCCTAACTGCTTGTCAACAATGGGCCAGAAC...CAGTTTTAAAGCCATCTCTTGCAAATTATGTTGGCGTTCTAAGTGGTTTTTACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS-3UTR TCA 90 bp TGTAAAAACCACTTAGAACGCCAACATAATTTGCAAGAGATGGCTTTAAAACTGCTGTGGAGAAAACATTaGAGTCCTGCAAAGAGGGGA +
Preference number: 4 (lower is better)
Translates to: CKNHLERQHNLQEMALKLLWRKH*SPAKRG
Trigger: TCCCCTCTTTGCAGGACTTCAATGTTTTCTCCACAG...CAGTTTTAAAGCCATCTCTTGCAAATTATGTTGGCGTTCTAAGTGGTTTTTACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS-3UTR CCA 90 bp TGTAAAAACCACTTAGAACGCCAACATAATTTGCAAGAGATGGCTTTAAAACTGTGGTTCTCCTTGCACTaGGTTTGCCTCTTATGCTTC +
Preference number: 4 (lower is better)
Translates to: CKNHLERQHNLQEMALKLWFSLH*VCLLCF
Trigger: GAAGCATAAGAGGCAAACCCAGTGCAAGGAGAACCA...CAGTTTTAAAGCCATCTCTTGCAAATTATGTTGGCGTTCTAAGTGGTTTTTACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS-3UTR TCA 90 bp AACGGAAAGTCCTCAACATTTGAGAGAGTAGGGGTAGATCAAGAAGAAACTAAATTGATTGATGAACTTTaGAATGTATCAGCGACAGGG +
Preference number: 4 (lower is better)
Translates to: NGKSSTFERVGVDQEETKLIDEL*NVSATG
Trigger: CCCTGTCGCTGATACATTTCAAAGTTCATCAATCAA...TTTAGTTTCTTCTTGATCTACCCCTACTCTCTCAAATGTTGAGGACTTTCCGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS-3UTR GCA 90 bp TTGCAAGAGATGGCTTTAAAACTGTGTCAGGGGAGAACATTAAACGGAAAGTCCTCAAATTTTTCTCATTaGTGGTTAAAGGCGAAACTG +
Preference number: 4 (lower is better)
Translates to: LQEMALKLCQGRTLNGKSSNFSH*WLKAKL
Trigger: CAGTTTCGCCTTTAACCAGCAATGAGAAAAATTTGA...GGACTTTCCGTTTAATGTTCTCCCCTGACACAGTTTTAAAGCCATCTCTTGCAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS-3UTR CCA 90 bp AACGGAAAGTCCTCAACATTTGAGAGAGTAGGGGTAGATCAAGAAGAAACTAAAAATTTTTCTCATTGCTaGTTAAAGGCGAAACTGGGA +
Preference number: 4 (lower is better)
Translates to: NGKSSTFERVGVDQEETKNFSHC*LKAKLG
Trigger: TCCCAGTTTCGCCTTTAACCAGCAATGAGAAAAATT...TTTAGTTTCTTCTTGATCTACCCCTACTCTCTCAAATGTTGAGGACTTTCCGTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS GCA 90 bp TCCAGGGATACTCAGGCGGCTGCAGGGCGCCGGCAGGCACCGGGCTaGCGCGACTGCCCGCGGGGCTCGACTTGGGGCGGCCGCCAACGC +
Preference number: 5 (lower is better)
Translates to: SRDTQAAAGRRQAPG*RDCPRGSTWGGRQR
Trigger: GCGTTGGCGGCCGCCCCAAGTCGAGCCCCGCGGGCAGTCGCGGCAGCCCGGTGCCTGCCGGCGCCCTGCAGCCGCCTGAGTATCCCTGGA
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS GCA 90 bp GAGTGTTGGTGTACGCGGTTCTCAGACGCCTGGATCCCCCGCCGCTaGCATCAGCTATTTCCAGGGATTCTTTGTGGCCGAGGCAGGCAG +
Preference number: 5 (lower is better)
Translates to: ECWCTRFSDAWIPRR*HQLFPGILCGRGRQ
Trigger: CTGCCTGCCTCGGCCACAAAGAATCCCTGGAAATAGCTGATGGCAGCGGCGGGGGATCCAGGCGTCTGAGAACCGCGTACACCAACACTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS TCA 90 bp CCTCTCCAGAAGGGCCCCGGAGACACTGAGGGCTTGCTCAAAGAGTaGCTTCTCTTCCTCGTCTTCCTCCACTTTGTCCGAGTCCTCCAG +
Preference number: 5 (lower is better)
Translates to: PLQKGPGDTEGLLKE*LLFLVFLHFVRVLQ
Trigger: CTGGAGGACTCGGACAAAGTGGAGGAAGACGAGGAAGAGAAGTCACTCTTTGAGCAAGCCCTCAGTGTCTCCGGGGCCCTTCTGGAGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS GCA 90 bp GTGTACCCTTCCCTCTCCAGAAGGGCCCCGGAGACACTGAGGGCTTaGTCAAAGAGTGACTTCTCTTCCTCGTCTTCCTCCACTTTGTCC +
Preference number: 5 (lower is better)
Translates to: VYPSLSRRAPETLRA*SKSDFSSSSSSTLS
Trigger: GGACAAAGTGGAGGAAGACGAGGAAGAGAAGTCACTCTTTGAGCAAGCCCTCAGTGTCTCCGGGGCCCTTCTGGAGAGGGAAGGGTACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS CCA 90 bp CCAGCTCCAAAAGCTGAGTGTTGGTGTACGCGGTTCTCAGACGCCTaGATCCCCCGCCGCTGCCATCAGCTATTTCCAGGGATTCTTTGT +
Preference number: 5 (lower is better)
Translates to: PAPKAECWCTRFSDA*IPRRCHQLFPGILC
Trigger: ACAAAGAATCCCTGGAAATAGCTGATGGCAGCGGCGGGGGATCCAGGCGTCTGAGAACCGCGTACACCAACACTCAGCTTTTGGAGCTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS CCA 90 bp TCGATGGCCTCGGGACTGTCATTGTTTAGGCCAGCTCCACAGTTCTaGCCCATTGTTGACAAGCAGTTAGGAACAGTGGGTGACTGGTGC +
Preference number: 5 (lower is better)
Translates to: SMASGLSLFRPAPQF*PIVDKQLGTVGDWC
Trigger: GCACCAGTCACCCACTGTTCCTAACTGCTTGTCAACAATGGGCCAGAACTGTGGAGCTGGCCTAAACAATGACAGTCCCGAGGCCATCGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS TCA 90 bp ACAGTGCATCTGAAAGCTGCAGGCAGGAATCTGTGGAGAAAACATTaGAGTCCTGCAAAGAGGGGACCTCGATGGCCTCGGGACTGTCAT +
Preference number: 5 (lower is better)
Translates to: TVHLKAAGRNLWRKH*SPAKRGPRWPRDCH
Trigger: ATGACAGTCCCGAGGCCATCGAGGTCCCCTCTTTGCAGGACTTCAATGTTTTCTCCACAGATTCCTGCCTGCAGCTTTCAGATGCACTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS GCA 90 bp TCTGAAAGCTGCAGGCAGGAATCTGTGGAGAAAACATTGAAGTCCTaGAAAGAGGGGACCTCGATGGCCTCGGGACTGTCATTGTTTAGG +
Preference number: 5 (lower is better)
Translates to: SESCRQESVEKTLKS*KEGTSMASGLSLFR
Trigger: CCTAAACAATGACAGTCCCGAGGCCATCGAGGTCCCCTCTTTGCAGGACTTCAATGTTTTCTCCACAGATTCCTGCCTGCAGCTTTCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS CCA 90 bp TTAAAGGCGAAACTGGGAAAGTTTGGGAGTCGCCATTGTGTCCATTaGGAGCCTGCTGTTGAGAGAGCGCATTTTGCTGAAAAGTGTACC +
Preference number: 5 (lower is better)
Translates to: LKAKLGKFGSRHCVH*EPAVERAHFAEKCT
Trigger: GGTACACTTTTCAGCAAAATGCGCTCTCTCAACAGCAGGCTCCCAATGGACACAATGGCGACTCCCAAACTTTCCCAGTTTCGCCTTTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS-3UTR CAA 90 bp AACGGAAAGTCCTCAACATTTGAGAGAGTAGGGGTAGATCAAGAAGAAACTAAAGGCAGCGCGGTTTTCTaGGCCGCCTTCTTCTCCTTC +
Preference number: 5 (lower is better)
Translates to: NGKSSTFERVGVDQEETKGSAVF*AAFFSF
Trigger: GAAGGAGAAGAAGGCGGCCAAGAAAACCGCGCTGCC...TTTAGTTTCTTCTTGATCTACCCCTACTCTCTCAAATGTTGAGGACTTTCCGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS-3UTR CAA 90 bp TTAAACGGAAAGTCCTCAACATTTGAGAGAGTAGGGGTAGATCAAGAAGAAACTGTTTGGGAGTCGCCATaGTGTCCATTGGGAGCCTGC +
Preference number: 5 (lower is better)
Translates to: LNGKSSTFERVGVDQEETVWESP*CPLGAC
Trigger: GCAGGCTCCCAATGGACACAATGGCGACTCCCAAAC...AGTTTCTTCTTGATCTACCCCTACTCTCTCAAATGTTGAGGACTTTCCGTTTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS-3UTR CAA 90 bp TTAAACGGAAAGTCCTCAACATTTGAGAGAGTAGGGGTAGATCAAGAAGAAACTGCCTCGGGACTGTCATaGTTTAGGCCAGCTCCACAG +
Preference number: 5 (lower is better)
Translates to: LNGKSSTFERVGVDQEETASGLS*FRPAPQ
Trigger: CTGTGGAGCTGGCCTAAACAATGACAGTCCCGAGGC...AGTTTCTTCTTGATCTACCCCTACTCTCTCAAATGTTGAGGACTTTCCGTTTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS-3UTR CAA 90 bp TGTAAAAACCACTTAGAACGCCAACATAATTTGCAAGAGATGGCTTTAAAACTGATTTCCAGGGATTCTTaGTGGCCGAGGCAGGCAGGG +
Preference number: 5 (lower is better)
Translates to: CKNHLERQHNLQEMALKLISRDS*WPRQAG
Trigger: CCCTGCCTGCCTCGGCCACAAAGAATCCCTGGAAAT...CAGTTTTAAAGCCATCTCTTGCAAATTATGTTGGCGTTCTAAGTGGTTTTTACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS-3UTR CAA 90 bp TTAAACGGAAAGTCCTCAACATTTGAGAGAGTAGGGGTAGATCAAGAAGAAACTTCGTCTTCCTCCACTTaGTCCGAGTCCTCCAGGTTT +
Preference number: 5 (lower is better)
Translates to: LNGKSSTFERVGVDQEETSSSST*SESSRF
Trigger: AAACCTGGAGGACTCGGACAAAGTGGAGGAAGACGA...AGTTTCTTCTTGATCTACCCCTACTCTCTCAAATGTTGAGGACTTTCCGTTTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS-3UTR CAA 90 bp ATGGCTTTAAAACTGTGTCAGGGGAGAACATTAAACGGAAAGTCCTCAACATTTATTGGGAGCCTGCTGTaGAGAGAGCGCATTTTGCTG +
Preference number: 5 (lower is better)
Translates to: MALKLCQGRTLNGKSSTFIGSLL*RERILL
Trigger: CAGCAAAATGCGCTCTCTCAACAGCAGGCTCCCAAT...AAATGTTGAGGACTTTCCGTTTAATGTTCTCCCCTGACACAGTTTTAAAGCCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS GCA 90 bp GAACAGTGGGTGACTGGTGCTGAAAATGTTTCAAATTTTTCTCATTaGTGGTTAAAGGCGAAACTGGGAAAGTTTGGGAGTCGCCATTGT +
Preference number: 5 (lower is better)
Translates to: EQWVTGAENVSNFSH*WLKAKLGKFGSRHC
Trigger: ACAATGGCGACTCCCAAACTTTCCCAGTTTCGCCTTTAACCAGCAATGAGAAAAATTTGAAACATTTTCAGCACCAGTCACCCACTGTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS-3UTR CAA 90 bp TTGCAAGAGATGGCTTTAAAACTGTGTCAGGGGAGAACATTAAACGGAAAGTCCAAACCACACTTTCACTaGTCTCTCGGTCAAATCCAG +
Preference number: 5 (lower is better)
Translates to: LQEMALKLCQGRTLNGKSKPHFH*SLGQIQ
Trigger: CTGGATTTGACCGAGAGACAAGTGAAAGTGTGGTTT...GGACTTTCCGTTTAATGTTCTCCCCTGACACAGTTTTAAAGCCATCTCTTGCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS-3UTR CAA 90 bp AACGGAAAGTCCTCAACATTTGAGAGAGTAGGGGTAGATCAAGAAGAAACTAAATTTCCCTTCGCTGTTTaGGTTCTCCTTGCACTGGGT +
Preference number: 5 (lower is better)
Translates to: NGKSSTFERVGVDQEETKFPFAV*VLLALG
Trigger: ACCCAGTGCAAGGAGAACCAAAACAGCGAAGGGAAA...TTTAGTTTCTTCTTGATCTACCCCTACTCTCTCAAATGTTGAGGACTTTCCGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS-3UTR CAA 90 bp ATGGCTTTAAAACTGTGTCAGGGGAGAACATTAAACGGAAAGTCCTCAACATTTCTCCTTGCACTGGGTTaGCCTCTTATGCTTCATTCT +
Preference number: 5 (lower is better)
Translates to: MALKLCQGRTLNGKSSTFLLALG*PLMLHS
Trigger: AGAATGAAGCATAAGAGGCAAACCCAGTGCAAGGAG...AAATGTTGAGGACTTTCCGTTTAATGTTCTCCCCTGACACAGTTTTAAAGCCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS-3UTR CAA 90 bp TTAAACGGAAAGTCCTCAACATTTGAGAGAGTAGGGGTAGATCAAGAAGAAACTCTGTTTTGGTTCTCCTaGCACTGGGTTTGCCTCTTA +
Preference number: 5 (lower is better)
Translates to: LNGKSSTFERVGVDQEETLFWFS*HWVCLL
Trigger: TAAGAGGCAAACCCAGTGCAAGGAGAACCAAAACAG...AGTTTCTTCTTGATCTACCCCTACTCTCTCAAATGTTGAGGACTTTCCGTTTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS-3UTR CAA 90 bp TTAAACGGAAAGTCCTCAACATTTGAGAGAGTAGGGGTAGATCAAGAAGAAACTTTGAGAGAGCGCATTTaGCTGAAAAGTGTACCCTTC +
Preference number: 5 (lower is better)
Translates to: LNGKSSTFERVGVDQEETLRERI*LKSVPF
Trigger: GAAGGGTACACTTTTCAGCAAAATGCGCTCTCTCAA...AGTTTCTTCTTGATCTACCCCTACTCTCTCAAATGTTGAGGACTTTCCGTTTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS-3UTR CAA 90 bp TGTAAAAACCACTTAGAACGCCAACATAATTTGCAAGAGATGGCTTTAAAACTGTCTGTGGAGAAAACATaGAAGTCCTGCAAAGAGGGG +
Preference number: 5 (lower is better)
Translates to: CKNHLERQHNLQEMALKLSVEKT*KSCKEG
Trigger: CCCCTCTTTGCAGGACTTCAATGTTTTCTCCACAGA...CAGTTTTAAAGCCATCTCTTGCAAATTATGTTGGCGTTCTAAGTGGTTTTTACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS GCA 72 bp GGCGGCCGCCAACGCCAGCGCCGTGGCGAGGGTGACTaGCCGGGTTCAGGCTGGGAATGGTCTGCTCAAAAG +
Preference number: 6 (lower is better)
Translates to: GGRQRQRRGEGD*PGSGWEWSAQK
Trigger: CTTTTGAGCAGACCATTCCCAGCCTGAACCCGGGCAGTCACCCTCGCCACGGCGCTGGCGTTGGCGGCCGCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS GCA 72 bp TGTACGCGGTTCTCAGACGCCTGGATCCCCCGCCGCTaGCATCAGCTATTTCCAGGGATTCTTTGTGGCCGA +
Preference number: 6 (lower is better)
Translates to: CTRFSDAWIPRR*HQLFPGILCGR
Trigger: TCGGCCACAAAGAATCCCTGGAAATAGCTGATGGCAGCGGCGGGGGATCCAGGCGTCTGAGAACCGCGTACA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS CCA 72 bp AAAGCTGAGTGTTGGTGTACGCGGTTCTCAGACGCCTaGATCCCCCGCCGCTGCCATCAGCTATTTCCAGGG +
Preference number: 6 (lower is better)
Translates to: KAECWCTRFSDA*IPRRCHQLFPG
Trigger: CCCTGGAAATAGCTGATGGCAGCGGCGGGGGATCCAGGCGTCTGAGAACCGCGTACACCAACACTCAGCTTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS GCA 72 bp TCCCTCTCCAGAAGGGCCCCGGAGACACTGAGGGCTTaGTCAAAGAGTGACTTCTCTTCCTCGTCTTCCTCC +
Preference number: 6 (lower is better)
Translates to: SLSRRAPETLRA*SKSDFSSSSSS
Trigger: GGAGGAAGACGAGGAAGAGAAGTCACTCTTTGAGCAAGCCCTCAGTGTCTCCGGGGCCCTTCTGGAGAGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS CAA 90 bp GTCGCCATTGTGTCCATTGGGAGCCTGCTGTTGAGAGAGCGCATTTaGCTGAAAAGTGTACCCTTCCCTCTCCAGAAGGGCCCCGGAGAC +
Preference number: 6 (lower is better)
Translates to: VAIVSIGSLLLRERI*LKSVPFPLQKGPGD
Trigger: GTCTCCGGGGCCCTTCTGGAGAGGGAAGGGTACACTTTTCAGCAAAATGCGCTCTCTCAACAGCAGGCTCCCAATGGACACAATGGCGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS TCA 72 bp TGTACCCTTCCCTCTCCAGAAGGGCCCCGGAGACACTaGGGGCTTGCTCAAAGAGTGACTTCTCTTCCTCGT +
Preference number: 6 (lower is better)
Translates to: CTLPSPEGPRRH*GLAQRVTSLPR
Trigger: ACGAGGAAGAGAAGTCACTCTTTGAGCAAGCCCTCAGTGTCTCCGGGGCCCTTCTGGAGAGGGAAGGGTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS CAA 90 bp TTGAAGTCCTGCAAAGAGGGGACCTCGATGGCCTCGGGACTGTCATaGTTTAGGCCAGCTCCACAGTTCTGGCCCATTGTTGACAAGCAG +
Preference number: 6 (lower is better)
Translates to: LKSCKEGTSMASGLS*FRPAPQFWPIVDKQ
Trigger: CTGCTTGTCAACAATGGGCCAGAACTGTGGAGCTGGCCTAAACAATGACAGTCCCGAGGCCATCGAGGTCCCCTCTTTGCAGGACTTCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS GCA 72 bp GAGCCAGGCAAGCTGGGCGACAGTGCATCTGAAAGCTaGAGGCAGGAATCTGTGGAGAAAACATTGAAGTCC +
Preference number: 6 (lower is better)
Translates to: EPGKLGDSASES*RQESVEKTLKS
Trigger: GGACTTCAATGTTTTCTCCACAGATTCCTGCCTGCAGCTTTCAGATGCACTGTCGCCCAGCTTGCCTGGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS CAA 72 bp GTGTCCATTGGGAGCCTGCTGTTGAGAGAGCGCATTTaGCTGAAAAGTGTACCCTTCCCTCTCCAGAAGGGC +
Preference number: 6 (lower is better)
Translates to: VSIGSLLLRERI*LKSVPFPLQKG
Trigger: GCCCTTCTGGAGAGGGAAGGGTACACTTTTCAGCAAAATGCGCTCTCTCAACAGCAGGCTCCCAATGGACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS CAA 90 bp TGGGAAAGTTTGGGAGTCGCCATTGTGTCCATTGGGAGCCTGCTGTaGAGAGAGCGCATTTTGCTGAAAAGTGTACCCTTCCCTCTCCAG +
Preference number: 6 (lower is better)
Translates to: WESLGVAIVSIGSLL*RERILLKSVPFPLQ
Trigger: CTGGAGAGGGAAGGGTACACTTTTCAGCAAAATGCGCTCTCTCAACAGCAGGCTCCCAATGGACACAATGGCGACTCCCAAACTTTCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS CCA 72 bp TCGGGACTGTCATTGTTTAGGCCAGCTCCACAGTTCTaGCCCATTGTTGACAAGCAGTTAGGAACAGTGGGT +
Preference number: 6 (lower is better)
Translates to: SGLSLFRPAPQF*PIVDKQLGTVG
Trigger: ACCCACTGTTCCTAACTGCTTGTCAACAATGGGCCAGAACTGTGGAGCTGGCCTAAACAATGACAGTCCCGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS CCA 72 bp AAACTGGGAAAGTTTGGGAGTCGCCATTGTGTCCATTaGGAGCCTGCTGTTGAGAGAGCGCATTTTGCTGAA +
Preference number: 6 (lower is better)
Translates to: KLGKFGSRHCVH*EPAVERAHFAE
Trigger: TTCAGCAAAATGCGCTCTCTCAACAGCAGGCTCCCAATGGACACAATGGCGACTCCCAAACTTTCCCAGTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS CCA 72 bp TTCTCATTGCTGGTTAAAGGCGAAACTGGGAAAGTTTaGGAGTCGCCATTGTGTCCATTGGGAGCCTGCTGT +
Preference number: 6 (lower is better)
Translates to: FSLLVKGETGKV*ESPLCPLGACC
Trigger: ACAGCAGGCTCCCAATGGACACAATGGCGACTCCCAAACTTTCCCAGTTTCGCCTTTAACCAGCAATGAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11
CDS TCA 72 bp GAGGAATCAGTGTCGAGTGTGAAAGCGTCGAGGTCTTaGTTGATGAACTTTGAAATGTATCAGCGACAGGGG +
Preference number: 6 (lower is better)
Translates to: EESVSSVKASRS*LMNFEMYQRQG
Trigger: CCCCTGTCGCTGATACATTTCAAAGTTCATCAATCAAGACCTCGACGCTTTCACACTCGACACTGATTCCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000014848.11