Pregenerated sensors for HOXA13 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038203Ensembl transcript IDs: ENSMUST00000147595.7
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AATGGCAGGGATTTCAATAAGGTTTACCTGAGCAGGCACTTAACATaGAAAGGGGAGGGTGCTGGACCAGCTGCGTGGAAACAGCCTTTG | + |
|
Preference number: 1 (lower is better) Translates to: NGRDFNKVYLSRHLT*KGEGAGPAAWKQPL Trigger: CAAAGGCTGTTTCCACGCAGCTGGTCCAGCACCCTCCCCTTTGCATGTTAAGTGCCTGCTCAGGTAAACCTTATTGAAATCCCTGCCATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| 3UTR-3UTR GCA 90 bp | AAACAATTCAGTGCCTTTCCCCCTTCTAAGCCTCTACCTGAAACATTTCCAGAAGGGTGCTGGACCAGCTaGGTGGAAACAGCCTTTGTT | + |
|
Preference number: 2 (lower is better) Translates to: KQFSAFPPSKPLPETFPEGCWTS*VETAFV Trigger: AACAAAGGCTGTTTCCACGCAGCTGGTCCAGCACCC...TTCTGGAAATGTTTCAGGTAGAGGCTTAGAAGGGGGAAAGGCACTGAATTGTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| 3UTR-3UTR CCA 90 bp | TTTAAAATGTGCTGTGACGATGAGTCCCTAAACTTTCTACTGCAGTCTCCTAACGCTGGACCAGCTGCGTaGAAACAGCCTTTGTTTCTG | + |
|
Preference number: 2 (lower is better) Translates to: FKMCCDDESLNFLLQSPNAGPAA*KQPLFL Trigger: CAGAAACAAAGGCTGTTTCCACGCAGCTGGTCCAGC...GTTAGGAGACTGCAGTAGAAAGTTTAGGGACTCATCGTCACAGCACATTTTAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| 3UTR-3UTR CCA 90 bp | TTTAAAATGTGCTGTGACGATGAGTCCCTAAACTTTCTACTGCAGTCTCCTAACAAATCCATACTAGGGTaGGACCTTCCAGGAGAAGGG | + |
|
Preference number: 2 (lower is better) Translates to: FKMCCDDESLNFLLQSPNKSILG*DLPGEG Trigger: CCCTTCTCCTGGAAGGTCCCACCCTAGTATGGATTT...GTTAGGAGACTGCAGTAGAAAGTTTAGGGACTCATCGTCACAGCACATTTTAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| 3UTR-3UTR GCA 90 bp | CTGCGTGGAAACAGCCTTTGTTTCTGTAACCAGTTTTCAGATTACCATCTAACAAGCGTTTCTTCAAGCTaGCCTCTGCTCCACCTTTTA | + |
|
Preference number: 2 (lower is better) Translates to: LRGNSLCFCNQFSDYHLTSVSSS*PLLHLL Trigger: TAAAAGGTGGAGCAGAGGGCAGCTTGAAGAAACGCT...TGTTAGATGGTAATCTGAAAACTGGTTACAGAAACAAAGGCTGTTTCCACGCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| 3UTR-3UTR TCA 90 bp | ATGTGTGAACTGAAATTACTGCTTGATTTAAAATGTGCTGTGACGATGAGTCCCTGTGGAAAAATCCTTTaGCAGTGTTGGTTAATCCAC | + |
|
Preference number: 2 (lower is better) Translates to: MCELKLLLDLKCAVTMSPCGKIL*QCWLIH Trigger: GTGGATTAACCAACACTGTCAAAGGATTTTTCCACA...GGGACTCATCGTCACAGCACATTTTAAATCAAGCAGTAATTTCAGTTCACACAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| 3UTR GCA 72 bp | TTACCTGAGCAGGCACTTAACATGCAAAGGGGAGGGTaGTGGACCAGCTGCGTGGAAACAGCCTTTGTTTCT | + |
|
Preference number: 3 (lower is better) Translates to: LPEQALNMQRGG*WTSCVETAFVS Trigger: AGAAACAAAGGCTGTTTCCACGCAGCTGGTCCAGCACCCTCCCCTTTGCATGTTAAGTGCCTGCTCAGGTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| 3UTR GCA 72 bp | GCACTTAACATGCAAAGGGGAGGGTGCTGGACCAGCTaGGTGGAAACAGCCTTTGTTTCTGTAACCAGTTTT | + |
|
Preference number: 3 (lower is better) Translates to: ALNMQRGGCWTS*VETAFVSVTSF Trigger: AAAACTGGTTACAGAAACAAAGGCTGTTTCCACGCAGCTGGTCCAGCACCCTCCCCTTTGCATGTTAAGTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| 3UTR GCA 72 bp | GATTTCAATAAGGTTTACCTGAGCAGGCACTTAACATaGAAAGGGGAGGGTGCTGGACCAGCTGCGTGGAAA | + |
|
Preference number: 3 (lower is better) Translates to: DFNKVYLSRHLT*KGEGAGPAAWK Trigger: TTTCCACGCAGCTGGTCCAGCACCCTCCCCTTTGCATGTTAAGTGCCTGCTCAGGTAAACCTTATTGAAATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS-3UTR GCA 90 bp | GAGCAGGCACTTAACATGCAAAGGGGAGGGTGCTGGACCAGCTGCGTGGAAACACAGAGGTGGGGAGGCTaGGTCTGCTCTTTGGGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: EQALNMQRGGCWTSCVETQRWGG*VCSLGQ Trigger: CTGCCCCAAAGAGCAGACGCAGCCTCCCCACCTCTG...TGTTTCCACGCAGCTGGTCCAGCACCCTCCCCTTTGCATGTTAAGTGCCTGCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS-3UTR GCA 90 bp | CGCTGTGGTGGGGTTGTCGGGAAACCTGGCAGTCTTTACCATTCCTTAAGGTTTTTGATGGCGTTGGGGTaGGGGCCCATGCGGGCGCAC | + |
|
Preference number: 4 (lower is better) Translates to: RCGGVVGKPGSLYHSLRFLMALG*GPMRAH Trigger: GTGCGCCCGCATGGGCCCGCACCCCAACGCCATCAA...AAACCTTAAGGAATGGTAAAGACTGCCAGGTTTCCCGACAACCCCACCACAGCG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS-3UTR CCA 90 bp | CGCTGTGGTGGGGTTGTCGGGAAACCTGGCAGTCTTTACCATTCCTTAAGGTTTGGCCGTTCCAGCCGTTaGGCAGAGCCCAGGGCTGAT | + |
|
Preference number: 4 (lower is better) Translates to: RCGGVVGKPGSLYHSLRFGRSSR*AEPRAD Trigger: ATCAGCCCTGGGCTCTGCCCAACGGCTGGAACGGCC...AAACCTTAAGGAATGGTAAAGACTGCCAGGTTTCCCGACAACCCCACCACAGCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS-3UTR GCA 90 bp | TGGTGGGGTTGTCGGGAAACCTGGCAGTCTTTACCATTCCTTAAGGTTTTGTTTCCGCCGAGCAGGGACTaGACTGCTTGGCGGCCTCGG | + |
|
Preference number: 4 (lower is better) Translates to: WWGCRETWQSLPFLKVLFPPSRD*TAWRPR Trigger: CCGAGGCCGCCAAGCAGTGCAGTCCCTGCTCGGCGG...AAACAAAACCTTAAGGAATGGTAAAGACTGCCAGGTTTCCCGACAACCCCACCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS-3UTR CCA 90 bp | GAGCAGGCACTTAACATGCAAAGGGGAGGGTGCTGGACCAGCTGCGTGGAAACACCCTCCTATAGGAGCTaGCGTCTGAAGGATGGGAGA | + |
|
Preference number: 4 (lower is better) Translates to: EQALNMQRGGCWTSCVETPSYRS*RLKDGR Trigger: TCTCCCATCCTTCAGACGCCAGCTCCTATAGGAGGG...TGTTTCCACGCAGCTGGTCCAGCACCCTCCCCTTTGCATGTTAAGTGCCTGCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS-3UTR TCA 90 bp | GTTCAAATAAACAATTCAGTGCCTTTCCCCCTTCTAAGCCTCTACCTGAAACATCCTTGGCGCGGGAGCTaGACTCCTCGGCCGCGGGGC | + |
|
Preference number: 4 (lower is better) Translates to: VQINNSVPFPLLSLYLKHPWRGS*TPRPRG Trigger: GCCCCGCGGCCGAGGAGTTCAGCTCCCGCGCCAAGG...ATGTTTCAGGTAGAGGCTTAGAAGGGGGAAAGGCACTGAATTGTTTATTTGAAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS-3UTR GCA 90 bp | AGGGATTTCAATAAGGTTTACCTGAGCAGGCACTTAACATGCAAAGGGGAGGGTGCCAGGGGTGCGGGATaGGCCATCAGGTTGCGGCAC | + |
|
Preference number: 4 (lower is better) Translates to: RDFNKVYLSRHLTCKGEGARGAG*AIRLRH Trigger: GTGCCGCAACCTGATGGCGCATCCCGCACCCCTGGC...ACCCTCCCCTTTGCATGTTAAGTGCCTGCTCAGGTAAACCTTATTGAAATCCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS-3UTR GCA 90 bp | CGCTGTGGTGGGGTTGTCGGGAAACCTGGCAGTCTTTACCATTCCTTAAGGTTTACGGGTAGTAGCCGCTaGCGAAGTAGCCGTAGGGCA | + |
|
Preference number: 4 (lower is better) Translates to: RCGGVVGKPGSLYHSLRFTGSSR*RSSRRA Trigger: TGCCCTACGGCTACTTCGGCAGCGGCTACTACCCGT...AAACCTTAAGGAATGGTAAAGACTGCCAGGTTTCCCGACAACCCCACCACAGCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS-3UTR GCA 90 bp | GTTCAAATAAACAATTCAGTGCCTTTCCCCCTTCTAAGCCTCTACCTGAAACATGCCGGGCGCCAGGGGTaGGGGATGCGCCATCAGGTT | + |
|
Preference number: 4 (lower is better) Translates to: VQINNSVPFPLLSLYLKHAGRQG*GMRHQV Trigger: AACCTGATGGCGCATCCCGCACCCCTGGCGCCCGGC...ATGTTTCAGGTAGAGGCTTAGAAGGGGGAAAGGCACTGAATTGTTTATTTGAAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS-3UTR GCA 90 bp | GTTCAAATAAACAATTCAGTGCCTTTCCCCCTTCTAAGCCTCTACCTGAAACATTGGGGTGCGGGCCCATaGGGGCGCACGGGTAGTAGC | + |
|
Preference number: 4 (lower is better) Translates to: VQINNSVPFPLLSLYLKHWGAGP*GRTGSS Trigger: GCTACTACCCGTGCGCCCGCATGGGCCCGCACCCCA...ATGTTTCAGGTAGAGGCTTAGAAGGGGGAAAGGCACTGAATTGTTTATTTGAAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS-3UTR CCA 90 bp | GACCAGCTGCGTGGAAACAGCCTTTGTTTCTGTAACCAGTTTTCAGATTACCATTCGATCCAGCGGGGGTaGAGGAGCACGGAGGCTGTC | + |
|
Preference number: 4 (lower is better) Translates to: DQLRGNSLCFCNQFSDYHSIQRG*RSTEAV Trigger: GACAGCCTCCGTGCTCCTCCACCCCCGCTGGATCGA...ATGGTAATCTGAAAACTGGTTACAGAAACAAAGGCTGTTTCCACGCAGCTGGTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS-3UTR GCA 90 bp | CTGCGTGGAAACAGCCTTTGTTTCTGTAACCAGTTTTCAGATTACCATCTAACAGAGCAGGGACTGCACTaGTTGGCGGCCTCGGCACCC | + |
|
Preference number: 4 (lower is better) Translates to: LRGNSLCFCNQFSDYHLTEQGLH*LAASAP Trigger: GGGTGCCGAGGCCGCCAAGCAGTGCAGTCCCTGCTC...TGTTAGATGGTAATCTGAAAACTGGTTACAGAAACAAAGGCTGTTTCCACGCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS-3UTR GCA 90 bp | ATGTGTGAACTGAAATTACTGCTTGATTTAAAATGTGCTGTGACGATGAGTCCCCCCCGACGAGCTCTGTaGCGCCGCCGAGCAGGGACT | + |
|
Preference number: 4 (lower is better) Translates to: MCELKLLLDLKCAVTMSPPRRAL*RRRAGT Trigger: AGTCCCTGCTCGGCGGCGGCACAGAGCTCGTCGGGG...GGGACTCATCGTCACAGCACATTTTAAATCAAGCAGTAATTTCAGTTCACACAT 52% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS-3UTR TCA 90 bp | AGGGATTTCAATAAGGTTTACCTGAGCAGGCACTTAACATGCAAAGGGGAGGGTCTTCCATGTTCTTGTTaGGCTCGTCGGCCACCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: RDFNKVYLSRHLTCKGEGLPCSC*ARRPPG Trigger: GCCTGGTGGCCGACGAGCTCAACAAGAACATGGAAG...ACCCTCCCCTTTGCATGTTAAGTGCCTGCTCAGGTAAACCTTATTGAAATCCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS-3UTR TCA 90 bp | TCTCCCTTTTTAGCAATAGTTCAAATAAACAATTCAGTGCCTTTCCCCCTTCTAGCTGCGCGCACGACTTaGTGGCGTTGGGGTGCGGGC | + |
|
Preference number: 4 (lower is better) Translates to: SPFLAIVQINNSVPFPLLAARTT*WRWGAG Trigger: GCCCGCACCCCAACGCCATCAAGTCGTGCGCGCAGC...TAGAAGGGGGAAAGGCACTGAATTGTTTATTTGAACTATTGCTAAAAAGGGAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS-3UTR CCA 90 bp | AAACAATTCAGTGCCTTTCCCCCTTCTAAGCCTCTACCTGAAACATTTCCAGAACGACGTCGGGCAGAGTaGACTTCCAGAGGTGGGGAG | + |
|
Preference number: 4 (lower is better) Translates to: KQFSAFPPSKPLPETFPERRRAE*TSRGGE Trigger: CTCCCCACCTCTGGAAGTCCACTCTGCCCGACGTCG...TTCTGGAAATGTTTCAGGTAGAGGCTTAGAAGGGGGAAAGGCACTGAATTGTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS-3UTR CCA 90 bp | TCAGTGCCTTTCCCCCTTCTAAGCCTCTACCTGAAACATTTCCAGAAGGAACAAGCTGATAGCTTTCCATaGGAAGCCCCAGAGGCTCGT | + |
|
Preference number: 4 (lower is better) Translates to: SVPFPLLSLYLKHFQKEQADSFP*EAPEAR Trigger: ACGAGCCTCTGGGGCTTCCCATGGAAAGCTATCAGC...TTGTTCCTTCTGGAAATGTTTCAGGTAGAGGCTTAGAAGGGGGAAAGGCACTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS-3UTR TCA 90 bp | AAACAATTCAGTGCCTTTCCCCCTTCTAAGCCTCTACCTGAAACATTTCCAGAAATAGGAGCTGGCGTCTaGAGGATGGGAGACGACGTC | + |
|
Preference number: 4 (lower is better) Translates to: KQFSAFPPSKPLPETFPEIGAGV*RMGDDV Trigger: GACGTCGTCTCCCATCCTTCAGACGCCAGCTCCTAT...TTCTGGAAATGTTTCAGGTAGAGGCTTAGAAGGGGGAAAGGCACTGAATTGTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS-3UTR TCA 90 bp | AGGGATTTCAATAAGGTTTACCTGAGCAGGCACTTAACATGCAAAGGGGAGGGTGAGGTTTGTCGTGGCTaGTATCCTCCTCCGTTTGTC | + |
|
Preference number: 4 (lower is better) Translates to: RDFNKVYLSRHLTCKGEGEVCRG*YPPPFV Trigger: GACAAACGGAGGAGGATATCAGCCACGACAAACCTC...ACCCTCCCCTTTGCATGTTAAGTGCCTGCTCAGGTAAACCTTATTGAAATCCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS-3UTR CCA 90 bp | TTTAAAATGTGCTGTGACGATGAGTCCCTAAACTTTCTACTGCAGTCTCCTAACGAGCCCCGGAACTACTaGCATATCCAGGTAGCCGGG | + |
|
Preference number: 4 (lower is better) Translates to: FKMCCDDESLNFLLQSPNEPRNY*HIQVAG Trigger: CCCGGCTACCTGGATATGCCAGTAGTTCCGGGGCTC...GTTAGGAGACTGCAGTAGAAAGTTTAGGGACTCATCGTCACAGCACATTTTAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS-3UTR GCA 90 bp | AAACAATTCAGTGCCTTTCCCCCTTCTAAGCCTCTACCTGAAACATTTCCAGAATGGGGAGGCTGCGTCTaGTCTTTGGGGCAGTACATT | + |
|
Preference number: 4 (lower is better) Translates to: KQFSAFPPSKPLPETFPEWGGCV*SLGQYI Trigger: AATGTACTGCCCCAAAGAGCAGACGCAGCCTCCCCA...TTCTGGAAATGTTTCAGGTAGAGGCTTAGAAGGGGGAAAGGCACTGAATTGTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS-3UTR GCA 90 bp | ATGTGTGAACTGAAATTACTGCTTGATTTAAAATGTGCTGTGACGATGAGTCCCGTGGTAAGGCCCGGCTaGGTAGCCCTGATGGTAGAA | + |
|
Preference number: 4 (lower is better) Translates to: MCELKLLLDLKCAVTMSPVVRPG*VALMVE Trigger: TTCTACCATCAGGGCTACGCAGCCGGGCCTTACCAC...GGGACTCATCGTCACAGCACATTTTAAATCAAGCAGTAATTTCAGTTCACACAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS-3UTR CCA 90 bp | ATGTGTGAACTGAAATTACTGCTTGATTTAAAATGTGCTGTGACGATGAGTCCCTTGGGGCAGTACATTTaGCCGTTCCAGCCGTTGGGC | + |
|
Preference number: 4 (lower is better) Translates to: MCELKLLLDLKCAVTMSPLGQYI*PFQPLG Trigger: GCCCAACGGCTGGAACGGCCAAATGTACTGCCCCAA...GGGACTCATCGTCACAGCACATTTTAAATCAAGCAGTAATTTCAGTTCACACAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS-3UTR CCA 90 bp | TGCTGTGACGATGAGTCCCTAAACTTTCTACTGCAGTCTCCTAACACAGTAAACTTGACCCTCCTGTTCTaGAACCAGATTGTGACCTGC | + |
|
Preference number: 4 (lower is better) Translates to: CCDDESLNFLLQSPNTVNLTLLF*NQIVTC Trigger: GCAGGTCACAATCTGGTTCCAGAACAGGAGGGTCAA...GTTTACTGTGTTAGGAGACTGCAGTAGAAAGTTTAGGGACTCATCGTCACAGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS-3UTR TCA 90 bp | ATGTGTGAACTGAAATTACTGCTTGATTTAAAATGTGCTGTGACGATGAGTCCCTGTCGTAGAGAAACATaGCGGTGGGCTCGATCCAGC | + |
|
Preference number: 4 (lower is better) Translates to: MCELKLLLDLKCAVTMSPCRRET*RWARSS Trigger: GCTGGATCGAGCCCACCGTCATGTTTCTCTACGACA...GGGACTCATCGTCACAGCACATTTTAAATCAAGCAGTAATTTCAGTTCACACAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS-3UTR CCA 90 bp | ATGTGTGAACTGAAATTACTGCTTGATTTAAAATGTGCTGTGACGATGAGTCCCGCTGCGTCTGCTCTTTaGGGCAGTACATTTGGCCGT | + |
|
Preference number: 4 (lower is better) Translates to: MCELKLLLDLKCAVTMSPAASAL*GSTFGR Trigger: ACGGCCAAATGTACTGCCCCAAAGAGCAGACGCAGC...GGGACTCATCGTCACAGCACATTTTAAATCAAGCAGTAATTTCAGTTCACACAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS GCA 90 bp | GCCGAAGTAGCCGTAGGGCAGCGCCGCGGGCCCCGACGAGCTCTGTaGCGCCGCCGAGCAGGGACTGCACTGCTTGGCGGCCTCGGCACC | + |
|
Preference number: 5 (lower is better) Translates to: AEVAVGQRRGPRRAL*RRRAGTALLGGLGT Trigger: GGTGCCGAGGCCGCCAAGCAGTGCAGTCCCTGCTCGGCGGCGGCACAGAGCTCGTCGGGGCCCGCGGCGCTGCCCTACGGCTACTTCGGC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS GCA 90 bp | TGGCGTTGGGGTGCGGGCCCATGCGGGCGCACGGGTAGTAGCCGCTaGCGAAGTAGCCGTAGGGCAGCGCCGCGGGCCCCGACGAGCTCT | + |
|
Preference number: 5 (lower is better) Translates to: WRWGAGPCGRTGSSR*RSSRRAAPRAPTSS Trigger: AGAGCTCGTCGGGGCCCGCGGCGCTGCCCTACGGCTACTTCGGCAGCGGCTACTACCCGTGCGCCCGCATGGGCCCGCACCCCAACGCCA 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS TCA 90 bp | CGGCCGCCGCCGCTGCCGCCGCCGCCGCCCCTTCCATGTTCTTGTTaGGCTCGTCGGCCACCAGGCCGCCGCCGTTGTCGTAGAGAAACA | + |
|
Preference number: 5 (lower is better) Translates to: RPPPLPPPPPLPCSC*ARRPPGRRRCRRET Trigger: TGTTTCTCTACGACAACGGCGGCGGCCTGGTGGCCGACGAGCTCAACAAGAACATGGAAGGGGCGGCGGCGGCGGCAGCGGCGGCGGCCG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS CCA 90 bp | GGCCGTTCCAGCCGTTGGGCAGAGCCCAGGGCTGATAGCTTTCCATaGGAAGCCCCAGAGGCTCGTGGCGCGACTCGCCAGGACCCCCGA | + |
|
Preference number: 5 (lower is better) Translates to: GRSSRWAEPRADSFP*EAPEARGATRQDPR Trigger: TCGGGGGTCCTGGCGAGTCGCGCCACGAGCCTCTGGGGCTTCCCATGGAAAGCTATCAGCCCTGGGCTCTGCCCAACGGCTGGAACGGCC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS TCA 90 bp | CTGCGTAGCCCTGATGGTAGAAAGCAAACTCCTTGGCGCGGGAGCTaGACTCCTCGGCCGCGGGGCCGGCGGTGTCCATGTACTTGTCGG | + |
|
Preference number: 5 (lower is better) Translates to: LRSPDGRKQTPWRGS*TPRPRGRRCPCTCR Trigger: CCGACAAGTACATGGACACCGCCGGCCCCGCGGCCGAGGAGTTCAGCTCCCGCGCCAAGGAGTTTGCTTTCTACCATCAGGGCTACGCAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS GCA 90 bp | ATCCAGGTAGCCGGGCACGGGCTGGTGATGGTGGTAAGGCCCGGCTaGGTAGCCCTGATGGTAGAAAGCAAACTCCTTGGCGCGGGAGCT | + |
|
Preference number: 5 (lower is better) Translates to: IQVAGHGLVMVVRPG*VALMVESKLLGAGA Trigger: AGCTCCCGCGCCAAGGAGTTTGCTTTCTACCATCAGGGCTACGCAGCCGGGCCTTACCACCATCACCAGCCCGTGCCCGGCTACCTGGAT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS-3UTR CAA 90 bp | GACCAGCTGCGTGGAAACAGCCTTTGTTTCTGTAACCAGTTTTCAGATTACCATGGCTGCGCGCACGACTaGATGGCGTTGGGGTGCGGG | + |
|
Preference number: 5 (lower is better) Translates to: DQLRGNSLCFCNQFSDYHGCAHD*MALGCG Trigger: CCCGCACCCCAACGCCATCAAGTCGTGCGCGCAGCC...ATGGTAATCTGAAAACTGGTTACAGAAACAAAGGCTGTTTCCACGCAGCTGGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS-3UTR CAA 90 bp | CTGCGTGGAAACAGCCTTTGTTTCTGTAACCAGTTTTCAGATTACCATCTAACACACGACTTGATGGCGTaGGGGTGCGGGCCCATGCGG | + |
|
Preference number: 5 (lower is better) Translates to: LRGNSLCFCNQFSDYHLTHDLMA*GCGPMR Trigger: CCGCATGGGCCCGCACCCCAACGCCATCAAGTCGTG...TGTTAGATGGTAATCTGAAAACTGGTTACAGAAACAAAGGCTGTTTCCACGCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS-3UTR CAA 90 bp | TCAGTGCCTTTCCCCCTTCTAAGCCTCTACCTGAAACATTTCCAGAAGGAACAATTTGGGGCAGTACATTaGGCCGTTCCAGCCGTTGGG | + |
|
Preference number: 5 (lower is better) Translates to: SVPFPLLSLYLKHFQKEQFGAVH*AVPAVG Trigger: CCCAACGGCTGGAACGGCCAAATGTACTGCCCCAAA...TTGTTCCTTCTGGAAATGTTTCAGGTAGAGGCTTAGAAGGGGGAAAGGCACTGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS-3UTR CAA 90 bp | TACCATTCCTTAAGGTTTTGTTTTAATTGTAGATTCCATGGAAGAGAGAGTCCCGGATGCGCCATCAGGTaGCGGCACTGGTTGGCCGCG | + |
|
Preference number: 5 (lower is better) Translates to: YHSLRFCFNCRFHGRESPGCAIR*RHWLAA Trigger: CGCGGCCAACCAGTGCCGCAACCTGATGGCGCATCC...GGGACTCTCTCTTCCATGGAATCTACAATTAAAACAAAACCTTAAGGAATGGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS-3UTR CAA 90 bp | AAACAATTCAGTGCCTTTCCCCCTTCTAAGCCTCTACCTGAAACATTTCCAGAAGGCTGCGTCTGCTCTTaGGGGCAGTACATTTGGCCG | + |
|
Preference number: 5 (lower is better) Translates to: KQFSAFPPSKPLPETFPEGCVCS*GQYIWP Trigger: CGGCCAAATGTACTGCCCCAAAGAGCAGACGCAGCC...TTCTGGAAATGTTTCAGGTAGAGGCTTAGAAGGGGGAAAGGCACTGAATTGTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS-3UTR CAA 90 bp | ATGTGTGAACTGAAATTACTGCTTGATTTAAAATGTGCTGTGACGATGAGTCCCGCCCCTTCCATGTTCTaGTTGAGCTCGTCGGCCACC | + |
|
Preference number: 5 (lower is better) Translates to: MCELKLLLDLKCAVTMSPAPSMF*LSSSAT Trigger: GGTGGCCGACGAGCTCAACAAGAACATGGAAGGGGC...GGGACTCATCGTCACAGCACATTTTAAATCAAGCAGTAATTTCAGTTCACACAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS-3UTR CAA 90 bp | ATGTGTGAACTGAAATTACTGCTTGATTTAAAATGTGCTGTGACGATGAGTCCCGCCTCTCAGAGAGGTTaGTCGTGGCTGATATCCTCC | + |
|
Preference number: 5 (lower is better) Translates to: MCELKLLLDLKCAVTMSPASQRG*SWLISS Trigger: GGAGGATATCAGCCACGACAAACCTCTCTGAGAGGC...GGGACTCATCGTCACAGCACATTTTAAATCAAGCAGTAATTTCAGTTCACACAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS-3UTR CAA 90 bp | AGGGATTTCAATAAGGTTTACCTGAGCAGGCACTTAACATGCAAAGGGGAGGGTGATATCCTCCTCCGTTaGTCCTTGGTAATGAATTTG | + |
|
Preference number: 5 (lower is better) Translates to: RDFNKVYLSRHLTCKGEGDILLR*SLVMNL Trigger: CAAATTCATTACCAAGGACAAACGGAGGAGGATATC...ACCCTCCCCTTTGCATGTTAAGTGCCTGCTCAGGTAAACCTTATTGAAATCCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS-3UTR CAA 90 bp | ATGTGTGAACTGAAATTACTGCTTGATTTAAAATGTGCTGTGACGATGAGTCCCTCCTTGGTAATGAATTaGTTCGTAGCGTATTCCCGT | + |
|
Preference number: 5 (lower is better) Translates to: MCELKLLLDLKCAVTMSPSLVMN*FVAYSR Trigger: ACGGGAATACGCTACGAACAAATTCATTACCAAGGA...GGGACTCATCGTCACAGCACATTTTAAATCAAGCAGTAATTTCAGTTCACACAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS GCA 72 bp | GCCCCGACGAGCTCTGTGCCGCCGCCGAGCAGGGACTaGACTGCTTGGCGGCCTCGGCACCCGCGGGCCCCG | + |
|
Preference number: 6 (lower is better) Translates to: APTSSVPPPSRD*TAWRPRHPRAP Trigger: CGGGGCCCGCGGGTGCCGAGGCCGCCAAGCAGTGCAGTCCCTGCTCGGCGGCGGCACAGAGCTCGTCGGGGC 79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS GCA 72 bp | GCCGTAGGGCAGCGCCGCGGGCCCCGACGAGCTCTGTaGCGCCGCCGAGCAGGGACTGCACTGCTTGGCGGC | + |
|
Preference number: 6 (lower is better) Translates to: AVGQRRGPRRAL*RRRAGTALLGG Trigger: GCCGCCAAGCAGTGCAGTCCCTGCTCGGCGGCGGCACAGAGCTCGTCGGGGCCCGCGGCGCTGCCCTACGGC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS GCA 72 bp | GGTGCGGGCCCATGCGGGCGCACGGGTAGTAGCCGCTaGCGAAGTAGCCGTAGGGCAGCGCCGCGGGCCCCG | + |
|
Preference number: 6 (lower is better) Translates to: GAGPCGRTGSSR*RSSRRAAPRAP Trigger: CGGGGCCCGCGGCGCTGCCCTACGGCTACTTCGGCAGCGGCTACTACCCGTGCGCCCGCATGGGCCCGCACC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS CAA 72 bp | GCCGCCGCTGCCGCCGCCGCCGCCCCTTCCATGTTCTaGTTGAGCTCGTCGGCCACCAGGCCGCCGCCGTTG | + |
|
Preference number: 6 (lower is better) Translates to: AAAAAAAAPSMF*LSSSATRPPPL Trigger: CAACGGCGGCGGCCTGGTGGCCGACGAGCTCAACAAGAACATGGAAGGGGCGGCGGCGGCGGCAGCGGCGGC 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS TCA 72 bp | CGGCCACCAGGCCGCCGCCGTTGTCGTAGAGAAACATaGCGGTGGGCTCGATCCAGCGGGGGTGGAGGAGCA | + |
|
Preference number: 6 (lower is better) Translates to: RPPGRRRCRRET*RWARSSGGGGA Trigger: TGCTCCTCCACCCCCGCTGGATCGAGCCCACCGTCATGTTTCTCTACGACAACGGCGGCGGCCTGGTGGCCG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS TCA 72 bp | CCTGATGGTAGAAAGCAAACTCCTTGGCGCGGGAGCTaGACTCCTCGGCCGCGGGGCCGGCGGTGTCCATGT | + |
|
Preference number: 6 (lower is better) Translates to: PDGRKQTPWRGS*TPRPRGRRCPC Trigger: ACATGGACACCGCCGGCCCCGCGGCCGAGGAGTTCAGCTCCCGCGCCAAGGAGTTTGCTTTCTACCATCAGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS CAA 72 bp | GTGGGGAGGCTGCGTCTGCTCTTTGGGGCAGTACATTaGGCCGTTCCAGCCGTTGGGCAGAGCCCAGGGCTG | + |
|
Preference number: 6 (lower is better) Translates to: VGRLRLLFGAVH*AVPAVGQSPGL Trigger: CAGCCCTGGGCTCTGCCCAACGGCTGGAACGGCCAAATGTACTGCCCCAAAGAGCAGACGCAGCCTCCCCAC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS GCA 72 bp | GCCGGGCACGGGCTGGTGATGGTGGTAAGGCCCGGCTaGGTAGCCCTGATGGTAGAAAGCAAACTCCTTGGC | + |
|
Preference number: 6 (lower is better) Translates to: AGHGLVMVVRPG*VALMVESKLLG Trigger: GCCAAGGAGTTTGCTTTCTACCATCAGGGCTACGCAGCCGGGCCTTACCACCATCACCAGCCCGTGCCCGGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||
| CDS CCA 72 bp | AAGGCACGCGCTTCTTTCTCCCCCTCCTATAGGAGCTaGCGTCTGAAGGATGGGAGACGACGTCGGGCAGAG | + |
|
Preference number: 6 (lower is better) Translates to: KARASFSPSYRS*RLKDGRRRRAE Trigger: CTCTGCCCGACGTCGTCTCCCATCCTTCAGACGCCAGCTCCTATAGGAGGGGGAGAAAGAAGCGCGTGCCTT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000147595.7 |
||