RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HOXA11 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038210

Ensembl transcript IDs: ENSMUST00000048026.10

Found 73 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GCCAAAGGCCAAGGACCCACTGGCCAGGCCTGCTGCTCTGCTGCCTaGCAGACACCAAATCCAAGTTTCCTTAATGTGGTGAAGAGTTTG +
Preference number: 1 (lower is better)
Translates to: AKGQGPTGQACCSAA*QTPNPSFLNVVKSL
Trigger: CAAACTCTTCACCACATTAAGGAAACTTGGATTTGGTGTCTGTCAGGCAGCAGAGCAGCAGGCCTGGCCAGTGGGTCCTTGGCCTTTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
3UTR TCA 90 bp ACCCTTAGAATTCAATTACTAATAGGAAGCTTAACCACGGAGATCTaGACCAAGAGAGTTTCAGGCCCCCTTCCTATTGGACGAATCTCT +
Preference number: 1 (lower is better)
Translates to: TLRIQLLIGSLTTEI*TKRVSGPLPIGRIS
Trigger: AGAGATTCGTCCAATAGGAAGGGGGCCTGAAACTCTCTTGGTTCAGATCTCCGTGGTTAAGCTTCCTATTAGTAATTGAATTCTAAGGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
3UTR-3UTR TCA 90 bp GAGACCTGGGGGTGGGCAGGCTCTGTGCAGAGGGTCTTGAGCGGGTGGCCTCCTGGGCCCAATCTCCAGTaGCCACACCCAGCTCAAAGC +
Preference number: 2 (lower is better)
Translates to: ETWGWAGSVQRVLSGWPPGPNLQ*PHPAQS
Trigger: GCTTTGAGCTGGGTGTGGTCACTGGAGATTGGGCCC...AGGAGGCCACCCGCTCAAGACCCTCTGCACAGAGCCTGCCCACCCCCAGGTCTC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
3UTR-3UTR CCA 90 bp AGCCCCTCACAGCCAAAGGCCAAGGACCCACTGGCCAGGCCTGCTGCTCTGCTGGTAGGCTGCAGAAGGTaGCTGCTAGGAGCTCAGGTT +
Preference number: 2 (lower is better)
Translates to: SPSQPKAKDPLARPAALLVGCRR*LLGAQV
Trigger: AACCTGAGCTCCTAGCAGCCACCTTCTGCAGCCTAC...CAGCAGAGCAGCAGGCCTGGCCAGTGGGTCCTTGGCCTTTGGCTGTGAGGGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
3UTR-3UTR CCA 90 bp CTGCAGAAGGTGGCTGCTAGGAGCTCAGGTTTGGGTGCAGATCAGTGGTGGGATTGGGAGACCTGGGGGTaGGCAGGCTCTGTGCAGAGG +
Preference number: 2 (lower is better)
Translates to: LQKVAARSSGLGADQWWDWETWG*AGSVQR
Trigger: CCTCTGCACAGAGCCTGCCCACCCCCAGGTCTCCCA...ATCCCACCACTGATCTGCACCCAAACCTGAGCTCCTAGCAGCCACCTTCTGCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
3UTR-3UTR TCA 90 bp GAGACCTGGGGGTGGGCAGGCTCTGTGCAGAGGGTCTTGAGCGGGTGGCCTCCTTTAACCACGGAGATCTaGACCAAGAGAGTTTCAGGC +
Preference number: 2 (lower is better)
Translates to: ETWGWAGSVQRVLSGWPPLTTEI*TKRVSG
Trigger: GCCTGAAACTCTCTTGGTTCAGATCTCCGTGGTTAA...AGGAGGCCACCCGCTCAAGACCCTCTGCACAGAGCCTGCCCACCCCCAGGTCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
3UTR-3UTR CCA 90 bp CTGCAGAAGGTGGCTGCTAGGAGCTCAGGTTTGGGTGCAGATCAGTGGTGGGATTTGACTTGGGAGACCTaGGGGTGGGCAGGCTCTGTG +
Preference number: 2 (lower is better)
Translates to: LQKVAARSSGLGADQWWDLTWET*GWAGSV
Trigger: CACAGAGCCTGCCCACCCCCAGGTCTCCCAAGTCAA...ATCCCACCACTGATCTGCACCCAAACCTGAGCTCCTAGCAGCCACCTTCTGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
3UTR-3UTR CCA 90 bp AGCCCCTCACAGCCAAAGGCCAAGGACCCACTGGCCAGGCCTGCTGCTCTGCTGGGTGCAGATCAGTGGTaGGATGATATTAATGACATC +
Preference number: 2 (lower is better)
Translates to: SPSQPKAKDPLARPAALLGADQW*DDINDI
Trigger: GATGTCATTAATATCATCCCACCACTGATCTGCACC...CAGCAGAGCAGCAGGCCTGGCCAGTGGGTCCTTGGCCTTTGGCTGTGAGGGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
3UTR-3UTR TCA 90 bp AGCCCCTCACAGCCAAAGGCCAAGGACCCACTGGCCAGGCCTGCTGCTCTGCTGGTTTCCTTAATGTGGTaGAGAGTTTGCCAAACTGTA +
Preference number: 2 (lower is better)
Translates to: SPSQPKAKDPLARPAALLVSLMW*RVCQTV
Trigger: TACAGTTTGGCAAACTCTTCACCACATTAAGGAAAC...CAGCAGAGCAGCAGGCCTGGCCAGTGGGTCCTTGGCCTTTGGCTGTGAGGGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
3UTR-3UTR CCA 90 bp CTTCAGCCCCTCACAGCCAAAGGCCAAGGACCCACTGGCCAGGCCTGCTGCTCTGATATTAATGACATCTaGATAGGTTTCTCCTTCCTC +
Preference number: 2 (lower is better)
Translates to: LQPLTAKGQGPTGQACCSDINDI*IGFSFL
Trigger: GAGGAAGGAGAAACCTATCCAGATGTCATTAATATC...AGAGCAGCAGGCCTGGCCAGTGGGTCCTTGGCCTTTGGCTGTGAGGGGCTGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
3UTR-3UTR CCA 90 bp ATTGAGGGGCCAGGAACCAGCACAGCCTCTGGAGTTTTCAATGTCTTCTACCCTTTCCAAGTCGCAATGTaGCTTGACCTTGTCAAGGGC +
Preference number: 2 (lower is better)
Translates to: IEGPGTSTASGVFNVFYPFQVAM*LDLVKG
Trigger: GCCCTTGACAAGGTCAAGCCACATTGCGACTTGGAA...AGGGTAGAAGACATTGAAAACTCCAGAGGCTGTGCTGGTTCCTGGCCCCTCAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
3UTR CAA 90 bp GAAAACCCAGGTAGGCTGCAGAAGGTGGCTGCTAGGAGCTCAGGTTaGGGTGCAGATCAGTGGTGGGATGATATTAATGACATCTGGATA +
Preference number: 2 (lower is better)
Translates to: ENPGRLQKVAARSSG*GADQWWDDINDIWI
Trigger: TATCCAGATGTCATTAATATCATCCCACCACTGATCTGCACCCAAACCTGAGCTCCTAGCAGCCACCTTCTGCAGCCTACCTGGGTTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
3UTR-3UTR TCA 90 bp ATTGAGGGGCCAGGAACCAGCACAGCCTCTGGAGTTTTCAATGTCTTCTACCCTAGTCGCAATGTGGCTTaGCCTTGTCAAGGGCAAAAT +
Preference number: 2 (lower is better)
Translates to: IEGPGTSTASGVFNVFYPSRNVA*PCQGQN
Trigger: ATTTTGCCCTTGACAAGGTCAAGCCACATTGCGACT...AGGGTAGAAGACATTGAAAACTCCAGAGGCTGTGCTGGTTCCTGGCCCCTCAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
3UTR-3UTR TCA 90 bp CTCTCTCTCCCTTTTCACAGCCACCTTTTGGTTAACTGTCTTTCACATTACTTTGGGCACACAGTTTCTTaGCTTGGGAGACCTGGGGGT +
Preference number: 2 (lower is better)
Translates to: LSLPFHSHLLVNCLSHYFGHTVS*LGRPGG
Trigger: ACCCCCAGGTCTCCCAAGTCAAGAAACTGTGTGCCC...AAAGTAATGTGAAAGACAGTTAACCAAAAGGTGGCTGTGAAAAGGGAGAGAGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
3UTR TCA 72 bp AGACCTGGGGGTGGGCAGGCTCTGTGCAGAGGGTCTTaGGCGGGTGGCCTCCTTAGGGTTTGGCAGGGGGCC +
Preference number: 3 (lower is better)
Translates to: RPGGGQALCRGS*AGGLLRVWQGA
Trigger: GGCCCCCTGCCAAACCCTAAGGAGGCCACCCGCTCAAGACCCTCTGCACAGAGCCTGCCCACCCCCAGGTCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
3UTR CCA 72 bp AGGCTTGGGGCACACAGTTTCTTGACTTGGGAGACCTaGGGGTGGGCAGGCTCTGTGCAGAGGGTCTTGAGC +
Preference number: 3 (lower is better)
Translates to: RLGAHSFLTWET*GWAGSVQRVLS
Trigger: GCTCAAGACCCTCTGCACAGAGCCTGCCCACCCCCAGGTCTCCCAAGTCAAGAAACTGTGTGCCCCAAGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
3UTR-3UTR CAA 90 bp AGCCCCTCACAGCCAAAGGCCAAGGACCCACTGGCCAGGCCTGCTGCTCTGCTGAAGTCGCAATGTGGCTaGACCTTGTCAAGGGCAAAA +
Preference number: 3 (lower is better)
Translates to: SPSQPKAKDPLARPAALLKSQCG*TLSRAK
Trigger: TTTTGCCCTTGACAAGGTCAAGCCACATTGCGACTT...CAGCAGAGCAGCAGGCCTGGCCAGTGGGTCCTTGGCCTTTGGCTGTGAGGGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
3UTR-3UTR CAA 90 bp CTTCAGCCCCTCACAGCCAAAGGCCAAGGACCCACTGGCCAGGCCTGCTGCTCTTTTCACAGCCACCTTTaGGTTAACTGTCTTTCACAT +
Preference number: 3 (lower is better)
Translates to: LQPLTAKGQGPTGQACCSFHSHL*VNCLSH
Trigger: ATGTGAAAGACAGTTAACCAAAAGGTGGCTGTGAAA...AGAGCAGCAGGCCTGGCCAGTGGGTCCTTGGCCTTTGGCTGTGAGGGGCTGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
3UTR TCA 72 bp CCTGACAGACACCAAATCCAAGTTTCCTTAATGTGGTaGAGAGTTTGCCAAACTGTAGCCCTCCGCAGGCAT +
Preference number: 3 (lower is better)
Translates to: PDRHQIQVSLMW*RVCQTVALRRH
Trigger: ATGCCTGCGGAGGGCTACAGTTTGGCAAACTCTTCACCACATTAAGGAAACTTGGATTTGGTGTCTGTCAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
3UTR CCA 72 bp GCTGCTAGGAGCTCAGGTTTGGGTGCAGATCAGTGGTaGGATGATATTAATGACATCTGGATAGGTTTCTCC +
Preference number: 3 (lower is better)
Translates to: AARSSGLGADQW*DDINDIWIGFS
Trigger: GGAGAAACCTATCCAGATGTCATTAATATCATCCCACCACTGATCTGCACCCAAACCTGAGCTCCTAGCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
3UTR CCA 72 bp GTGGCTGCTAGGAGCTCAGGTTTGGGTGCAGATCAGTaGTGGGATGATATTAATGACATCTGGATAGGTTTC +
Preference number: 3 (lower is better)
Translates to: VAARSSGLGADQ*WDDINDIWIGF
Trigger: GAAACCTATCCAGATGTCATTAATATCATCCCACCACTGATCTGCACCCAAACCTGAGCTCCTAGCAGCCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
3UTR-3UTR CAA 90 bp GTCTTTCACATTACTTTTGGAAAGCAACCCCAGCCTGAATCTCTAGGAGTCATCCAATGTGGCTTGACCTaGTCAAGGGCAAAATCTGCA +
Preference number: 3 (lower is better)
Translates to: VFHITFGKQPQPESLGVIQCGLT*SRAKSA
Trigger: TGCAGATTTTGCCCTTGACAAGGTCAAGCCACATTG...GATGACTCCTAGAGATTCAGGCTGGGGTTGCTTTCCAAAAGTAATGTGAAAGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
3UTR TCA 72 bp ATTCAATTACTAATAGGAAGCTTAACCACGGAGATCTaGACCAAGAGAGTTTCAGGCCCCCTTCCTATTGGA +
Preference number: 3 (lower is better)
Translates to: IQLLIGSLTTEI*TKRVSGPLPIG
Trigger: TCCAATAGGAAGGGGGCCTGAAACTCTCTTGGTTCAGATCTCCGTGGTTAAGCTTCCTATTAGTAATTGAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS-3UTR CCA 90 bp GAGACCTGGGGGTGGGCAGGCTCTGTGCAGAGGGTCTTGAGCGGGTGGCCTCCTACGAGACGGCGGGGGTaGGGTGGTGGTAGACGTTGG +
Preference number: 4 (lower is better)
Translates to: ETWGWAGSVQRVLSGWPPTRRRG*GGGRRW
Trigger: CCAACGTCTACCACCACCCCACCCCCGCCGTCTCGT...AGGAGGCCACCCGCTCAAGACCCTCTGCACAGAGCCTGCCCACCCCCAGGTCTC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS-3UTR CCA 90 bp GAGACCTGGGGGTGGGCAGGCTCTGTGCAGAGGGTCTTGAGCGGGTGGCCTCCTTTTTTGCGGGTGCGTTaGCCACCGGAGCCACCGGCC +
Preference number: 4 (lower is better)
Translates to: ETWGWAGSVQRVLSGWPPFLRVR*PPEPPA
Trigger: GGCCGGTGGCTCCGGTGGCCAACGCACCCGCAAAAA...AGGAGGCCACCCGCTCAAGACCCTCTGCACAGAGCCTGCCCACCCCCAGGTCTC
68% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS-3UTR CCA 90 bp CTTCAGCCCCTCACAGCCAAAGGCCAAGGACCCACTGGCCAGGCCTGCTGCTCTCGTTGGCCGAGCTCTTaGCCAGCACGTCGCCAGGCA +
Preference number: 4 (lower is better)
Translates to: LQPLTAKGQGPTGQACCSRWPSS*PARRQA
Trigger: TGCCTGGCGACGTGCTGGCCAAGAGCTCGGCCAACG...AGAGCAGCAGGCCTGGCCAGTGGGTCCTTGGCCTTTGGCTGTGAGGGGCTGAAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS-3UTR CCA 90 bp GAGACCTGGGGGTGGGCAGGCTCTGTGCAGAGGGTCTTGAGCGGGTGGCCTCCTCCGTGCTATAGAAATTaGACGAGACGGCGGGGGTGG +
Preference number: 4 (lower is better)
Translates to: ETWGWAGSVQRVLSGWPPPCYRN*TRRRGW
Trigger: CCACCCCCGCCGTCTCGTCCAATTTCTATAGCACGG...AGGAGGCCACCCGCTCAAGACCCTCTGCACAGAGCCTGCCCACCCCCAGGTCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS-3UTR CCA 90 bp GAGACCTGGGGGTGGGCAGGCTCTGTGCAGAGGGTCTTGAGCGGGTGGCCTCCTGAGGCTGGAGAAATCTaGACCCGAGACGTAGTAAGT +
Preference number: 4 (lower is better)
Translates to: ETWGWAGSVQRVLSGWPPEAGEI*TRDVVS
Trigger: ACTTACTACGTCTCGGGTCCAGATTTCTCCAGCCTC...AGGAGGCCACCCGCTCAAGACCCTCTGCACAGAGCCTGCCCACCCCCAGGTCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS-3UTR GCA 90 bp ATTGAGGGGCCAGGAACCAGCACAGCCTCTGGAGTTTTCAATGTCTTCTACCCTGCCGCGCTGGGCGCCTaGAGACAGTCTCTGTGCACG +
Preference number: 4 (lower is better)
Translates to: IEGPGTSTASGVFNVFYPAALGA*RQSLCT
Trigger: CGTGCACAGAGACTGTCTGCAGGCGCCCAGCGCGGC...AGGGTAGAAGACATTGAAAACTCCAGAGGCTGTGCTGGTTCCTGGCCCCTCAAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS-3UTR GCA 90 bp CTTCAGCCCCTCACAGCCAAAGGCCAAGGACCCACTGGCCAGGCCTGCTGCTCTCGTTCCTGCCCACCGTaGTATAGAAATTGGACGAGA +
Preference number: 4 (lower is better)
Translates to: LQPLTAKGQGPTGQACCSRSCPP*YRNWTR
Trigger: TCTCGTCCAATTTCTATAGCACGGTGGGCAGGAACG...AGAGCAGCAGGCCTGGCCAGTGGGTCCTTGGCCTTTGGCTGTGAGGGGCTGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS-3UTR GCA 90 bp ACCACACCCAGCTCAAAGCTTTTGCAGGCTCTAAGAGTGAACCACCAGGGGTCCAGATTGCCGCGGGGGTaGCATTTAGTGGCGGGCTCA +
Preference number: 4 (lower is better)
Translates to: TTPSSKLLQALRVNHQGSRLPRG*HLVAGS
Trigger: TGAGCCCGCCACTAAATGGCACCCCCGCGGCAATCT...GGACCCCTGGTGGTTCACTCTTAGAGCCTGCAAAAGCTTTGAGCTGGGTGTGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS-3UTR CCA 90 bp ATTGAGGGGCCAGGAACCAGCACAGCCTCTGGAGTTTTCAATGTCTTCTACCCTGTCGCAGCTGCTGCTTaGGGCCCCTTCTCGGCGTTC +
Preference number: 4 (lower is better)
Translates to: IEGPGTSTASGVFNVFYPVAAAA*GPFSAF
Trigger: GAACGCCGAGAAGGGGCCCCAAGCAGCAGCTGCGAC...AGGGTAGAAGACATTGAAAACTCCAGAGGCTGTGCTGGTTCCTGGCCCCTCAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS-3UTR TCA 90 bp ACCACACCCAGCTCAAAGCTTTTGCAGGCTCTAAGAGTGAACCACCAGGGGTCCCAATGGCGTACTCTCTaGAGGTCACTTCGCGCACGG +
Preference number: 4 (lower is better)
Translates to: TTPSSKLLQALRVNHQGSQWRTL*RSLRAR
Trigger: CCGTGCGCGAAGTGACCTTCAGAGAGTACGCCATTG...GGACCCCTGGTGGTTCACTCTTAGAGCCTGCAAAAGCTTTGAGCTGGGTGTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS-3UTR CCA 90 bp ATTGAGGGGCCAGGAACCAGCACAGCCTCTGGAGTTTTCAATGTCTTCTACCCTGCCTTGTCCTCAGTGTaGCCGGAAGACGACTCGGGG +
Preference number: 4 (lower is better)
Translates to: IEGPGTSTASGVFNVFYPALSSV*PEDDSG
Trigger: CCCCGAGTCGTCTTCCGGCCACACTGAGGACAAGGC...AGGGTAGAAGACATTGAAAACTCCAGAGGCTGTGCTGGTTCCTGGCCCCTCAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS-3UTR GCA 90 bp CTCAAAGCTTTTGCAGGCTCTAAGAGTGAACCACCAGGGGTCCCAAACCATTCAAAGGGCAGCGCTTTTTaGGGGTGCGTTGGCCACCGG +
Preference number: 4 (lower is better)
Translates to: LKAFAGSKSEPPGVPNHSKGSAF*GCVGHR
Trigger: CCGGTGGCCAACGCACCCGCAAAAAGCGCTGCCCTT...TGAATGGTTTGGGACCCCTGGTGGTTCACTCTTAGAGCCTGCAAAAGCTTTGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS-3UTR CCA 90 bp CAAGTCGCAATGTGGCTTGACCTTGTCAAGGGCAAAATCTGCATATTATTTCACGCACGCCGGCCGCGCTaGGCGCCTGCAGACAGTCTC +
Preference number: 4 (lower is better)
Translates to: QVAMWLDLVKGKICILFHARRPR*APADSL
Trigger: GAGACTGTCTGCAGGCGCCCAGCGCGGCCGGCGTGC...GTGAAATAATATGCAGATTTTGCCCTTGACAAGGTCAAGCCACATTGCGACTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS-3UTR CCA 90 bp CTCAAAGCTTTTGCAGGCTCTAAGAGTGAACCACCAGGGGTCCCAAACCATTCAGGTGGTGGTAGACGTTaGCCGAGCTCTTGGCCAGCA +
Preference number: 4 (lower is better)
Translates to: LKAFAGSKSEPPGVPNHSGGGRR*PSSWPA
Trigger: TGCTGGCCAAGAGCTCGGCCAACGTCTACCACCACC...TGAATGGTTTGGGACCCCTGGTGGTTCACTCTTAGAGCCTGCAAAAGCTTTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS-3UTR GCA 90 bp CTCAAAGCTTTTGCAGGCTCTAAGAGTGAACCACCAGGGGTCCCAAACCATTCAGCAGAACGCCGTTCCTaGCCACCGTGCTATAGAAAT +
Preference number: 4 (lower is better)
Translates to: LKAFAGSKSEPPGVPNHSAERRS*PPCYRN
Trigger: ATTTCTATAGCACGGTGGGCAGGAACGGCGTTCTGC...TGAATGGTTTGGGACCCCTGGTGGTTCACTCTTAGAGCCTGCAAAAGCTTTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS-3UTR GCA 90 bp CTCTCTCTCCCTTTTCACAGCCACCTTTTGGTTAACTGTCTTTCACATTACTTTTGCAGACAGTCTCTGTaGACGAGCTCCTCCGCGGAG +
Preference number: 4 (lower is better)
Translates to: LSLPFHSHLLVNCLSHYFCRQSL*TSSSAE
Trigger: CTCCGCGGAGGAGCTCGTGCACAGAGACTGTCTGCA...AAAGTAATGTGAAAGACAGTTAACCAAAAGGTGGCTGTGAAAAGGGAGAGAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS-3UTR GCA 90 bp GCAATGTGGCTTGACCTTGTCAAGGGCAAAATCTGCATATTATTTCACATGTATAGCGCTTTTTGCGGGTaGGTTGGCCACCGGAGCCAC +
Preference number: 4 (lower is better)
Translates to: AMWLDLVKGKICILFHMYSAFCG*VGHRSH
Trigger: GTGGCTCCGGTGGCCAACGCACCCGCAAAAAGCGCT...ATACATGTGAAATAATATGCAGATTTTGCCCTTGACAAGGTCAAGCCACATTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS-3UTR CCA 90 bp GTCTTTCACATTACTTTTGGAAAGCAACCCCAGCCTGAATCTCTAGGAGTCATCGTAGGAGTATGTCATTaGGCGCGAAGACGGGGTCTG +
Preference number: 4 (lower is better)
Translates to: VFHITFGKQPQPESLGVIVGVCH*ARRRGL
Trigger: CAGACCCCGTCTTCGCGCCCAATGACATACTCCTAC...GATGACTCCTAGAGATTCAGGCTGGGGTTGCTTTCCAAAAGTAATGTGAAAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS-3UTR CCA 90 bp GCAATGTGGCTTGACCTTGTCAAGGGCAAAATCTGCATATTATTTCACATGTATCTGGTCGAAAGCCTGTaGCAGAACGCCGTTCCTGCC +
Preference number: 4 (lower is better)
Translates to: AMWLDLVKGKICILFHMYLVESL*QNAVPA
Trigger: GGCAGGAACGGCGTTCTGCCACAGGCTTTCGACCAG...ATACATGTGAAATAATATGCAGATTTTGCCCTTGACAAGGTCAAGCCACATTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS-3UTR GCA 90 bp CTCTCTCTCCCTTTTCACAGCCACCTTTTGGTTAACTGTCTTTCACATTACTTTCGAGGTTTTCCGGGGTaGCGTAAGCCGTCTCGAAAA +
Preference number: 4 (lower is better)
Translates to: LSLPFHSHLLVNCLSHYFRGFPG*RKPSRK
Trigger: TTTTCGAGACGGCTTACGGCACCCCGGAAAACCTCG...AAAGTAATGTGAAAGACAGTTAACCAAAAGGTGGCTGTGAAAAGGGAGAGAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS-3UTR CCA 90 bp CAAGTCGCAATGTGGCTTGACCTTGTCAAGGGCAAAATCTGCATATTATTTCACGCCGTCTCGAAAAACTaGTCGAAAGCCTGTGGCAGA +
Preference number: 4 (lower is better)
Translates to: QVAMWLDLVKGKICILFHAVSKN*SKACGR
Trigger: TCTGCCACAGGCTTTCGACCAGTTTTTCGAGACGGC...GTGAAATAATATGCAGATTTTGCCCTTGACAAGGTCAAGCCACATTGCGACTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
3UTR CAA 72 bp ACACCAAATCCAAGTTTCCTTAATGTGGTGAAGAGTTaGCCAAACTGTAGCCCTCCGCAGGCATTTCCTGTA +
Preference number: 4 (lower is better)
Translates to: TPNPSFLNVVKS*PNCSPPQAFPV
Trigger: TACAGGAAATGCCTGCGGAGGGCTACAGTTTGGCAAACTCTTCACCACATTAAGGAAACTTGGATTTGGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS-3UTR CCA 90 bp CAAGTCGCAATGTGGCTTGACCTTGTCAAGGGCAAAATCTGCATATTATTTCACAAAAAGAAGGGAGGCTaGAGAAATCTGGACCCGAGA +
Preference number: 4 (lower is better)
Translates to: QVAMWLDLVKGKICILFHKKKGG*RNLDPR
Trigger: TCTCGGGTCCAGATTTCTCCAGCCTCCCTTCTTTTT...GTGAAATAATATGCAGATTTTGCCCTTGACAAGGTCAAGCCACATTGCGACTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS-3UTR CCA 90 bp GCAATGTGGCTTGACCTTGTCAAGGGCAAAATCTGCATATTATTTCACATGTATGTAGTAAGTACAACTTaGCAAATACATGTTAGAGGA +
Preference number: 4 (lower is better)
Translates to: AMWLDLVKGKICILFHMYVVSTT*QIHVRG
Trigger: TCCTCTAACATGTATTTGCCAAGTTGTACTTACTAC...ATACATGTGAAATAATATGCAGATTTTGCCCTTGACAAGGTCAAGCCACATTGC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS CCA 90 bp CGCCGCCACCGCCGCCGTCCGAACTTGAAGTTGCCGGCGCGCCCGTaGCCGCCGCCGCCACCGCCGCAGCGGAGGTCGCAGCTGCTGCTT +
Preference number: 5 (lower is better)
Translates to: RRHRRRPNLKLPARP*PPPPPPQRRSQLLL
Trigger: AAGCAGCAGCTGCGACCTCCGCTGCGGCGGTGGCGGCGGCGGCCACGGGCGCGCCGGCAACTTCAAGTTCGGACGGCGGCGGTGGCGGCG
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS CCA 90 bp ACGAGACGGCGGGGGTGGGGTGGTGGTAGACGTTGGCCGAGCTCTTaGCCAGCACGTCGCCAGGCACGCCGGCCGCGCTGGGCGCCTGCA +
Preference number: 5 (lower is better)
Translates to: TRRRGWGGGRRWPSS*PARRQARRPRWAPA
Trigger: TGCAGGCGCCCAGCGCGGCCGGCGTGCCTGGCGACGTGCTGGCCAAGAGCTCGGCCAACGTCTACCACCACCCCACCCCCGCCGTCTCGT
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS GCA 90 bp CACCGGCCTTGTCCTCAGTGTGGCCGGAAGACGACTCGGGGCTGCTaGTGCTCTCGGGTCGCCGCCGTCGCTCCTTCTCCTCCGCCGCCG +
Preference number: 5 (lower is better)
Translates to: HRPCPQCGRKTTRGC*CSRVAAVAPSPPPP
Trigger: CGGCGGCGGAGGAGAAGGAGCGACGGCGGCGACCCGAGAGCAGCAGCAGCCCCGAGTCGTCTTCCGGCCACACTGAGGACAAGGCCGGTG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS CCA 90 bp TGGCCGAGCTCTTGGCCAGCACGTCGCCAGGCACGCCGGCCGCGCTaGGCGCCTGCAGACAGTCTCTGTGCACGAGCTCCTCCGCGGAGT +
Preference number: 5 (lower is better)
Translates to: WPSSWPARRQARRPR*APADSLCARAPPRS
Trigger: ACTCCGCGGAGGAGCTCGTGCACAGAGACTGTCTGCAGGCGCCCAGCGCGGCCGGCGTGCCTGGCGACGTGCTGGCCAAGAGCTCGGCCA
72% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS GCA 90 bp AGCCACCGGCCTTGTCCTCAGTGTGGCCGGAAGACGACTCGGGGCTaGTGCTGCTCTCGGGTCGCCGCCGTCGCTCCTTCTCCTCCGCCG +
Preference number: 5 (lower is better)
Translates to: SHRPCPQCGRKTTRG*CCSRVAAVAPSPPP
Trigger: CGGCGGAGGAGAAGGAGCGACGGCGGCGACCCGAGAGCAGCAGCAGCCCCGAGTCGTCTTCCGGCCACACTGAGGACAAGGCCGGTGGCT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS CCA 90 bp TTGCGGGTGCGTTGGCCACCGGAGCCACCGGCCTTGTCCTCAGTGTaGCCGGAAGACGACTCGGGGCTGCTGCTGCTCTCGGGTCGCCGC +
Preference number: 5 (lower is better)
Translates to: LRVRWPPEPPALSSV*PEDDSGLLLLSGRR
Trigger: GCGGCGACCCGAGAGCAGCAGCAGCCCCGAGTCGTCTTCCGGCCACACTGAGGACAAGGCCGGTGGCTCCGGTGGCCAACGCACCCGCAA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS-3UTR CAA 90 bp GAGACCTGGGGGTGGGCAGGCTCTGTGCAGAGGGTCTTGAGCGGGTGGCCTCCTACGTTGGCCGAGCTCTaGGCCAGCACGTCGCCAGGC +
Preference number: 5 (lower is better)
Translates to: ETWGWAGSVQRVLSGWPPTLAEL*ASTSPG
Trigger: GCCTGGCGACGTGCTGGCCAAGAGCTCGGCCAACGT...AGGAGGCCACCCGCTCAAGACCCTCTGCACAGAGCCTGCCCACCCCCAGGTCTC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS-3UTR CAA 90 bp GAGACCTGGGGGTGGGCAGGCTCTGTGCAGAGGGTCTTGAGCGGGTGGCCTCCTGGTCGCAGCTGCTGCTaGGGGCCCCTTCTCGGCGTT +
Preference number: 5 (lower is better)
Translates to: ETWGWAGSVQRVLSGWPPGRSCC*GPLLGV
Trigger: AACGCCGAGAAGGGGCCCCAAGCAGCAGCTGCGACC...AGGAGGCCACCCGCTCAAGACCCTCTGCACAGAGCCTGCCCACCCCCAGGTCTC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS CCA 90 bp TATAGAAATTGGACGAGACGGCGGGGGTGGGGTGGTGGTAGACGTTaGCCGAGCTCTTGGCCAGCACGTCGCCAGGCACGCCGGCCGCGC +
Preference number: 5 (lower is better)
Translates to: YRNWTRRRGWGGGRR*PSSWPARRQARRPR
Trigger: GCGCGGCCGGCGTGCCTGGCGACGTGCTGGCCAAGAGCTCGGCCAACGTCTACCACCACCCCACCCCCGCCGTCTCGTCCAATTTCTATA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS-3UTR CAA 90 bp AGCCCCTCACAGCCAAAGGCCAAGGACCCACTGGCCAGGCCTGCTGCTCTGCTGCTTTTTGCGGGTGCGTaGGCCACCGGAGCCACCGGC +
Preference number: 5 (lower is better)
Translates to: SPSQPKAKDPLARPAALLLFAGA*ATGATG
Trigger: GCCGGTGGCTCCGGTGGCCAACGCACCCGCAAAAAG...CAGCAGAGCAGCAGGCCTGGCCAGTGGGTCCTTGGCCTTTGGCTGTGAGGGGCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS CCA 90 bp AAGCCTGTGGCAGAACGCCGTTCCTGCCCACCGTGCTATAGAAATTaGACGAGACGGCGGGGGTGGGGTGGTGGTAGACGTTGGCCGAGC +
Preference number: 5 (lower is better)
Translates to: KPVAERRSCPPCYRN*TRRRGWGGGRRWPS
Trigger: GCTCGGCCAACGTCTACCACCACCCCACCCCCGCCGTCTCGTCCAATTTCTATAGCACGGTGGGCAGGAACGGCGTTCTGCCACAGGCTT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS-3UTR CAA 90 bp ATTGAGGGGCCAGGAACCAGCACAGCCTCTGGAGTTTTCAATGTCTTCTACCCTCCGGAGCCACCGGCCTaGTCCTCAGTGTGGCCGGAA +
Preference number: 5 (lower is better)
Translates to: IEGPGTSTASGVFNVFYPPEPPA*SSVWPE
Trigger: TTCCGGCCACACTGAGGACAAGGCCGGTGGCTCCGG...AGGGTAGAAGACATTGAAAACTCCAGAGGCTGTGCTGGTTCCTGGCCCCTCAAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS-3UTR CAA 90 bp CTCCTTAGGGTTTGGCAGGGGGCCCAATCTCCAGTGACCACACCCAGCTCAAAGAGTAGGAGTATGTCATaGGGCGCGAAGACGGGGTCT +
Preference number: 5 (lower is better)
Translates to: LLRVWQGAQSPVTTPSSKSRSMS*GAKTGS
Trigger: AGACCCCGTCTTCGCGCCCAATGACATACTCCTACT...CTTTGAGCTGGGTGTGGTCACTGGAGATTGGGCCCCCTGCCAAACCCTAAGGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS CCA 90 bp AGGGAGGCTGGAGAAATCTGGACCCGAGACGTAGTAAGTACAACTTaGCAAATACATGTTAGAGGAGCAGGGACCACGCTCATCAAAATC +
Preference number: 5 (lower is better)
Translates to: REAGEIWTRDVVSTT*QIHVRGAGTTLIKI
Trigger: GATTTTGATGAGCGTGGTCCCTGCTCCTCTAACATGTATTTGCCAAGTTGTACTTACTACGTCTCGGGTCCAGATTTCTCCAGCCTCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS CCA 72 bp CGCCGCCGTCCGAACTTGAAGTTGCCGGCGCGCCCGTaGCCGCCGCCGCCACCGCCGCAGCGGAGGTCGCAG +
Preference number: 6 (lower is better)
Translates to: RRRPNLKLPARP*PPPPPPQRRSQ
Trigger: CTGCGACCTCCGCTGCGGCGGTGGCGGCGGCGGCCACGGGCGCGCCGGCAACTTCAAGTTCGGACGGCGGCG
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS CCA 72 bp CGGGGGTGGGGTGGTGGTAGACGTTGGCCGAGCTCTTaGCCAGCACGTCGCCAGGCACGCCGGCCGCGCTGG +
Preference number: 6 (lower is better)
Translates to: RGWGGGRRWPSS*PARRQARRPRW
Trigger: CCAGCGCGGCCGGCGTGCCTGGCGACGTGCTGGCCAAGAGCTCGGCCAACGTCTACCACCACCCCACCCCCG
75% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS GCA 72 bp AGCACGTCGCCAGGCACGCCGGCCGCGCTGGGCGCCTaGAGACAGTCTCTGTGCACGAGCTCCTCCGCGGAG +
Preference number: 6 (lower is better)
Translates to: STSPGTPAALGA*RQSLCTSSSAE
Trigger: CTCCGCGGAGGAGCTCGTGCACAGAGACTGTCTGCAGGCGCCCAGCGCGGCCGGCGTGCCTGGCGACGTGCT
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS GCA 72 bp CCTCAGTGTGGCCGGAAGACGACTCGGGGCTGCTGCTaGTCTCGGGTCGCCGCCGTCGCTCCTTCTCCTCCG +
Preference number: 6 (lower is better)
Translates to: PQCGRKTTRGCC*SRVAAVAPSPP
Trigger: CGGAGGAGAAGGAGCGACGGCGGCGACCCGAGAGCAGCAGCAGCCCCGAGTCGTCTTCCGGCCACACTGAGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS CCA 72 bp TCTTGGCCAGCACGTCGCCAGGCACGCCGGCCGCGCTaGGCGCCTGCAGACAGTCTCTGTGCACGAGCTCCT +
Preference number: 6 (lower is better)
Translates to: SWPARRQARRPR*APADSLCARAP
Trigger: AGGAGCTCGTGCACAGAGACTGTCTGCAGGCGCCCAGCGCGGCCGGCGTGCCTGGCGACGTGCTGGCCAAGA
71% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS CCA 72 bp CGTTGGCCACCGGAGCCACCGGCCTTGTCCTCAGTGTaGCCGGAAGACGACTCGGGGCTGCTGCTGCTCTCG +
Preference number: 6 (lower is better)
Translates to: RWPPEPPALSSV*PEDDSGLLLLS
Trigger: CGAGAGCAGCAGCAGCCCCGAGTCGTCTTCCGGCCACACTGAGGACAAGGCCGGTGGCTCCGGTGGCCAACG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS GCA 72 bp TGTCCTCAGTGTGGCCGGAAGACGACTCGGGGCTGCTaGTGCTCTCGGGTCGCCGCCGTCGCTCCTTCTCCT +
Preference number: 6 (lower is better)
Translates to: CPQCGRKTTRGC*CSRVAAVAPSP
Trigger: AGGAGAAGGAGCGACGGCGGCGACCCGAGAGCAGCAGCAGCCCCGAGTCGTCTTCCGGCCACACTGAGGACA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS GCA 72 bp CCTTGTCCTCAGTGTGGCCGGAAGACGACTCGGGGCTaGTGCTGCTCTCGGGTCGCCGCCGTCGCTCCTTCT +
Preference number: 6 (lower is better)
Translates to: PCPQCGRKTTRG*CCSRVAAVAPS
Trigger: AGAAGGAGCGACGGCGGCGACCCGAGAGCAGCAGCAGCCCCGAGTCGTCTTCCGGCCACACTGAGGACAAGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS CAA 72 bp TTTTTGCGGGTGCGTTGGCCACCGGAGCCACCGGCCTaGTCCTCAGTGTGGCCGGAAGACGACTCGGGGCTG +
Preference number: 6 (lower is better)
Translates to: FLRVRWPPEPPA*SSVWPEDDSGL
Trigger: CAGCCCCGAGTCGTCTTCCGGCCACACTGAGGACAAGGCCGGTGGCTCCGGTGGCCAACGCACCCGCAAAAA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS GCA 72 bp CGAAAGCCTGTGGCAGAACGCCGTTCCTGCCCACCGTaGTATAGAAATTGGACGAGACGGCGGGGGTGGGGT +
Preference number: 6 (lower is better)
Translates to: RKPVAERRSCPP*YRNWTRRRGWG
Trigger: ACCCCACCCCCGCCGTCTCGTCCAATTTCTATAGCACGGTGGGCAGGAACGGCGTTCTGCCACAGGCTTTCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS CCA 72 bp CCACCGTGCTATAGAAATTGGACGAGACGGCGGGGGTaGGGTGGTGGTAGACGTTGGCCGAGCTCTTGGCCA +
Preference number: 6 (lower is better)
Translates to: PPCYRNWTRRRG*GGGRRWPSSWP
Trigger: TGGCCAAGAGCTCGGCCAACGTCTACCACCACCCCACCCCCGCCGTCTCGTCCAATTTCTATAGCACGGTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10
CDS CCA 72 bp GGAGAAATCTGGACCCGAGACGTAGTAAGTACAACTTaGCAAATACATGTTAGAGGAGCAGGGACCACGCTC +
Preference number: 6 (lower is better)
Translates to: GEIWTRDVVSTT*QIHVRGAGTTL
Trigger: GAGCGTGGTCCCTGCTCCTCTAACATGTATTTGCCAAGTTGTACTTACTACGTCTCGGGTCCAGATTTCTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048026.10