Pregenerated sensors for HOXA11 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038210Ensembl transcript IDs: ENSMUST00000048026.10
Found 73 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR TCA 90 bp | GCCAAAGGCCAAGGACCCACTGGCCAGGCCTGCTGCTCTGCTGCCTaGCAGACACCAAATCCAAGTTTCCTTAATGTGGTGAAGAGTTTG | + |
Preference number: 1 (lower is better) Translates to: AKGQGPTGQACCSAA*QTPNPSFLNVVKSL Trigger: CAAACTCTTCACCACATTAAGGAAACTTGGATTTGGTGTCTGTCAGGCAGCAGAGCAGCAGGCCTGGCCAGTGGGTCCTTGGCCTTTGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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3UTR TCA 90 bp | ACCCTTAGAATTCAATTACTAATAGGAAGCTTAACCACGGAGATCTaGACCAAGAGAGTTTCAGGCCCCCTTCCTATTGGACGAATCTCT | + |
Preference number: 1 (lower is better) Translates to: TLRIQLLIGSLTTEI*TKRVSGPLPIGRIS Trigger: AGAGATTCGTCCAATAGGAAGGGGGCCTGAAACTCTCTTGGTTCAGATCTCCGTGGTTAAGCTTCCTATTAGTAATTGAATTCTAAGGGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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3UTR-3UTR TCA 90 bp | GAGACCTGGGGGTGGGCAGGCTCTGTGCAGAGGGTCTTGAGCGGGTGGCCTCCTGGGCCCAATCTCCAGTaGCCACACCCAGCTCAAAGC | + |
Preference number: 2 (lower is better) Translates to: ETWGWAGSVQRVLSGWPPGPNLQ*PHPAQS Trigger: GCTTTGAGCTGGGTGTGGTCACTGGAGATTGGGCCC...AGGAGGCCACCCGCTCAAGACCCTCTGCACAGAGCCTGCCCACCCCCAGGTCTC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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3UTR-3UTR CCA 90 bp | AGCCCCTCACAGCCAAAGGCCAAGGACCCACTGGCCAGGCCTGCTGCTCTGCTGGTAGGCTGCAGAAGGTaGCTGCTAGGAGCTCAGGTT | + |
Preference number: 2 (lower is better) Translates to: SPSQPKAKDPLARPAALLVGCRR*LLGAQV Trigger: AACCTGAGCTCCTAGCAGCCACCTTCTGCAGCCTAC...CAGCAGAGCAGCAGGCCTGGCCAGTGGGTCCTTGGCCTTTGGCTGTGAGGGGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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3UTR-3UTR CCA 90 bp | CTGCAGAAGGTGGCTGCTAGGAGCTCAGGTTTGGGTGCAGATCAGTGGTGGGATTGGGAGACCTGGGGGTaGGCAGGCTCTGTGCAGAGG | + |
Preference number: 2 (lower is better) Translates to: LQKVAARSSGLGADQWWDWETWG*AGSVQR Trigger: CCTCTGCACAGAGCCTGCCCACCCCCAGGTCTCCCA...ATCCCACCACTGATCTGCACCCAAACCTGAGCTCCTAGCAGCCACCTTCTGCAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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3UTR-3UTR TCA 90 bp | GAGACCTGGGGGTGGGCAGGCTCTGTGCAGAGGGTCTTGAGCGGGTGGCCTCCTTTAACCACGGAGATCTaGACCAAGAGAGTTTCAGGC | + |
Preference number: 2 (lower is better) Translates to: ETWGWAGSVQRVLSGWPPLTTEI*TKRVSG Trigger: GCCTGAAACTCTCTTGGTTCAGATCTCCGTGGTTAA...AGGAGGCCACCCGCTCAAGACCCTCTGCACAGAGCCTGCCCACCCCCAGGTCTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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3UTR-3UTR CCA 90 bp | CTGCAGAAGGTGGCTGCTAGGAGCTCAGGTTTGGGTGCAGATCAGTGGTGGGATTTGACTTGGGAGACCTaGGGGTGGGCAGGCTCTGTG | + |
Preference number: 2 (lower is better) Translates to: LQKVAARSSGLGADQWWDLTWET*GWAGSV Trigger: CACAGAGCCTGCCCACCCCCAGGTCTCCCAAGTCAA...ATCCCACCACTGATCTGCACCCAAACCTGAGCTCCTAGCAGCCACCTTCTGCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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3UTR-3UTR CCA 90 bp | AGCCCCTCACAGCCAAAGGCCAAGGACCCACTGGCCAGGCCTGCTGCTCTGCTGGGTGCAGATCAGTGGTaGGATGATATTAATGACATC | + |
Preference number: 2 (lower is better) Translates to: SPSQPKAKDPLARPAALLGADQW*DDINDI Trigger: GATGTCATTAATATCATCCCACCACTGATCTGCACC...CAGCAGAGCAGCAGGCCTGGCCAGTGGGTCCTTGGCCTTTGGCTGTGAGGGGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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3UTR-3UTR TCA 90 bp | AGCCCCTCACAGCCAAAGGCCAAGGACCCACTGGCCAGGCCTGCTGCTCTGCTGGTTTCCTTAATGTGGTaGAGAGTTTGCCAAACTGTA | + |
Preference number: 2 (lower is better) Translates to: SPSQPKAKDPLARPAALLVSLMW*RVCQTV Trigger: TACAGTTTGGCAAACTCTTCACCACATTAAGGAAAC...CAGCAGAGCAGCAGGCCTGGCCAGTGGGTCCTTGGCCTTTGGCTGTGAGGGGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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3UTR-3UTR CCA 90 bp | CTTCAGCCCCTCACAGCCAAAGGCCAAGGACCCACTGGCCAGGCCTGCTGCTCTGATATTAATGACATCTaGATAGGTTTCTCCTTCCTC | + |
Preference number: 2 (lower is better) Translates to: LQPLTAKGQGPTGQACCSDINDI*IGFSFL Trigger: GAGGAAGGAGAAACCTATCCAGATGTCATTAATATC...AGAGCAGCAGGCCTGGCCAGTGGGTCCTTGGCCTTTGGCTGTGAGGGGCTGAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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3UTR-3UTR CCA 90 bp | ATTGAGGGGCCAGGAACCAGCACAGCCTCTGGAGTTTTCAATGTCTTCTACCCTTTCCAAGTCGCAATGTaGCTTGACCTTGTCAAGGGC | + |
Preference number: 2 (lower is better) Translates to: IEGPGTSTASGVFNVFYPFQVAM*LDLVKG Trigger: GCCCTTGACAAGGTCAAGCCACATTGCGACTTGGAA...AGGGTAGAAGACATTGAAAACTCCAGAGGCTGTGCTGGTTCCTGGCCCCTCAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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3UTR CAA 90 bp | GAAAACCCAGGTAGGCTGCAGAAGGTGGCTGCTAGGAGCTCAGGTTaGGGTGCAGATCAGTGGTGGGATGATATTAATGACATCTGGATA | + |
Preference number: 2 (lower is better) Translates to: ENPGRLQKVAARSSG*GADQWWDDINDIWI Trigger: TATCCAGATGTCATTAATATCATCCCACCACTGATCTGCACCCAAACCTGAGCTCCTAGCAGCCACCTTCTGCAGCCTACCTGGGTTTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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3UTR-3UTR TCA 90 bp | ATTGAGGGGCCAGGAACCAGCACAGCCTCTGGAGTTTTCAATGTCTTCTACCCTAGTCGCAATGTGGCTTaGCCTTGTCAAGGGCAAAAT | + |
Preference number: 2 (lower is better) Translates to: IEGPGTSTASGVFNVFYPSRNVA*PCQGQN Trigger: ATTTTGCCCTTGACAAGGTCAAGCCACATTGCGACT...AGGGTAGAAGACATTGAAAACTCCAGAGGCTGTGCTGGTTCCTGGCCCCTCAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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3UTR-3UTR TCA 90 bp | CTCTCTCTCCCTTTTCACAGCCACCTTTTGGTTAACTGTCTTTCACATTACTTTGGGCACACAGTTTCTTaGCTTGGGAGACCTGGGGGT | + |
Preference number: 2 (lower is better) Translates to: LSLPFHSHLLVNCLSHYFGHTVS*LGRPGG Trigger: ACCCCCAGGTCTCCCAAGTCAAGAAACTGTGTGCCC...AAAGTAATGTGAAAGACAGTTAACCAAAAGGTGGCTGTGAAAAGGGAGAGAGAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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3UTR TCA 72 bp | AGACCTGGGGGTGGGCAGGCTCTGTGCAGAGGGTCTTaGGCGGGTGGCCTCCTTAGGGTTTGGCAGGGGGCC | + |
Preference number: 3 (lower is better) Translates to: RPGGGQALCRGS*AGGLLRVWQGA Trigger: GGCCCCCTGCCAAACCCTAAGGAGGCCACCCGCTCAAGACCCTCTGCACAGAGCCTGCCCACCCCCAGGTCT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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3UTR CCA 72 bp | AGGCTTGGGGCACACAGTTTCTTGACTTGGGAGACCTaGGGGTGGGCAGGCTCTGTGCAGAGGGTCTTGAGC | + |
Preference number: 3 (lower is better) Translates to: RLGAHSFLTWET*GWAGSVQRVLS Trigger: GCTCAAGACCCTCTGCACAGAGCCTGCCCACCCCCAGGTCTCCCAAGTCAAGAAACTGTGTGCCCCAAGCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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3UTR-3UTR CAA 90 bp | AGCCCCTCACAGCCAAAGGCCAAGGACCCACTGGCCAGGCCTGCTGCTCTGCTGAAGTCGCAATGTGGCTaGACCTTGTCAAGGGCAAAA | + |
Preference number: 3 (lower is better) Translates to: SPSQPKAKDPLARPAALLKSQCG*TLSRAK Trigger: TTTTGCCCTTGACAAGGTCAAGCCACATTGCGACTT...CAGCAGAGCAGCAGGCCTGGCCAGTGGGTCCTTGGCCTTTGGCTGTGAGGGGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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3UTR-3UTR CAA 90 bp | CTTCAGCCCCTCACAGCCAAAGGCCAAGGACCCACTGGCCAGGCCTGCTGCTCTTTTCACAGCCACCTTTaGGTTAACTGTCTTTCACAT | + |
Preference number: 3 (lower is better) Translates to: LQPLTAKGQGPTGQACCSFHSHL*VNCLSH Trigger: ATGTGAAAGACAGTTAACCAAAAGGTGGCTGTGAAA...AGAGCAGCAGGCCTGGCCAGTGGGTCCTTGGCCTTTGGCTGTGAGGGGCTGAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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3UTR TCA 72 bp | CCTGACAGACACCAAATCCAAGTTTCCTTAATGTGGTaGAGAGTTTGCCAAACTGTAGCCCTCCGCAGGCAT | + |
Preference number: 3 (lower is better) Translates to: PDRHQIQVSLMW*RVCQTVALRRH Trigger: ATGCCTGCGGAGGGCTACAGTTTGGCAAACTCTTCACCACATTAAGGAAACTTGGATTTGGTGTCTGTCAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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3UTR CCA 72 bp | GCTGCTAGGAGCTCAGGTTTGGGTGCAGATCAGTGGTaGGATGATATTAATGACATCTGGATAGGTTTCTCC | + |
Preference number: 3 (lower is better) Translates to: AARSSGLGADQW*DDINDIWIGFS Trigger: GGAGAAACCTATCCAGATGTCATTAATATCATCCCACCACTGATCTGCACCCAAACCTGAGCTCCTAGCAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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3UTR CCA 72 bp | GTGGCTGCTAGGAGCTCAGGTTTGGGTGCAGATCAGTaGTGGGATGATATTAATGACATCTGGATAGGTTTC | + |
Preference number: 3 (lower is better) Translates to: VAARSSGLGADQ*WDDINDIWIGF Trigger: GAAACCTATCCAGATGTCATTAATATCATCCCACCACTGATCTGCACCCAAACCTGAGCTCCTAGCAGCCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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3UTR-3UTR CAA 90 bp | GTCTTTCACATTACTTTTGGAAAGCAACCCCAGCCTGAATCTCTAGGAGTCATCCAATGTGGCTTGACCTaGTCAAGGGCAAAATCTGCA | + |
Preference number: 3 (lower is better) Translates to: VFHITFGKQPQPESLGVIQCGLT*SRAKSA Trigger: TGCAGATTTTGCCCTTGACAAGGTCAAGCCACATTG...GATGACTCCTAGAGATTCAGGCTGGGGTTGCTTTCCAAAAGTAATGTGAAAGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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3UTR TCA 72 bp | ATTCAATTACTAATAGGAAGCTTAACCACGGAGATCTaGACCAAGAGAGTTTCAGGCCCCCTTCCTATTGGA | + |
Preference number: 3 (lower is better) Translates to: IQLLIGSLTTEI*TKRVSGPLPIG Trigger: TCCAATAGGAAGGGGGCCTGAAACTCTCTTGGTTCAGATCTCCGTGGTTAAGCTTCCTATTAGTAATTGAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS-3UTR CCA 90 bp | GAGACCTGGGGGTGGGCAGGCTCTGTGCAGAGGGTCTTGAGCGGGTGGCCTCCTACGAGACGGCGGGGGTaGGGTGGTGGTAGACGTTGG | + |
Preference number: 4 (lower is better) Translates to: ETWGWAGSVQRVLSGWPPTRRRG*GGGRRW Trigger: CCAACGTCTACCACCACCCCACCCCCGCCGTCTCGT...AGGAGGCCACCCGCTCAAGACCCTCTGCACAGAGCCTGCCCACCCCCAGGTCTC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS-3UTR CCA 90 bp | GAGACCTGGGGGTGGGCAGGCTCTGTGCAGAGGGTCTTGAGCGGGTGGCCTCCTTTTTTGCGGGTGCGTTaGCCACCGGAGCCACCGGCC | + |
Preference number: 4 (lower is better) Translates to: ETWGWAGSVQRVLSGWPPFLRVR*PPEPPA Trigger: GGCCGGTGGCTCCGGTGGCCAACGCACCCGCAAAAA...AGGAGGCCACCCGCTCAAGACCCTCTGCACAGAGCCTGCCCACCCCCAGGTCTC 68% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS-3UTR CCA 90 bp | CTTCAGCCCCTCACAGCCAAAGGCCAAGGACCCACTGGCCAGGCCTGCTGCTCTCGTTGGCCGAGCTCTTaGCCAGCACGTCGCCAGGCA | + |
Preference number: 4 (lower is better) Translates to: LQPLTAKGQGPTGQACCSRWPSS*PARRQA Trigger: TGCCTGGCGACGTGCTGGCCAAGAGCTCGGCCAACG...AGAGCAGCAGGCCTGGCCAGTGGGTCCTTGGCCTTTGGCTGTGAGGGGCTGAAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS-3UTR CCA 90 bp | GAGACCTGGGGGTGGGCAGGCTCTGTGCAGAGGGTCTTGAGCGGGTGGCCTCCTCCGTGCTATAGAAATTaGACGAGACGGCGGGGGTGG | + |
Preference number: 4 (lower is better) Translates to: ETWGWAGSVQRVLSGWPPPCYRN*TRRRGW Trigger: CCACCCCCGCCGTCTCGTCCAATTTCTATAGCACGG...AGGAGGCCACCCGCTCAAGACCCTCTGCACAGAGCCTGCCCACCCCCAGGTCTC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS-3UTR CCA 90 bp | GAGACCTGGGGGTGGGCAGGCTCTGTGCAGAGGGTCTTGAGCGGGTGGCCTCCTGAGGCTGGAGAAATCTaGACCCGAGACGTAGTAAGT | + |
Preference number: 4 (lower is better) Translates to: ETWGWAGSVQRVLSGWPPEAGEI*TRDVVS Trigger: ACTTACTACGTCTCGGGTCCAGATTTCTCCAGCCTC...AGGAGGCCACCCGCTCAAGACCCTCTGCACAGAGCCTGCCCACCCCCAGGTCTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS-3UTR GCA 90 bp | ATTGAGGGGCCAGGAACCAGCACAGCCTCTGGAGTTTTCAATGTCTTCTACCCTGCCGCGCTGGGCGCCTaGAGACAGTCTCTGTGCACG | + |
Preference number: 4 (lower is better) Translates to: IEGPGTSTASGVFNVFYPAALGA*RQSLCT Trigger: CGTGCACAGAGACTGTCTGCAGGCGCCCAGCGCGGC...AGGGTAGAAGACATTGAAAACTCCAGAGGCTGTGCTGGTTCCTGGCCCCTCAAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS-3UTR GCA 90 bp | CTTCAGCCCCTCACAGCCAAAGGCCAAGGACCCACTGGCCAGGCCTGCTGCTCTCGTTCCTGCCCACCGTaGTATAGAAATTGGACGAGA | + |
Preference number: 4 (lower is better) Translates to: LQPLTAKGQGPTGQACCSRSCPP*YRNWTR Trigger: TCTCGTCCAATTTCTATAGCACGGTGGGCAGGAACG...AGAGCAGCAGGCCTGGCCAGTGGGTCCTTGGCCTTTGGCTGTGAGGGGCTGAAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS-3UTR GCA 90 bp | ACCACACCCAGCTCAAAGCTTTTGCAGGCTCTAAGAGTGAACCACCAGGGGTCCAGATTGCCGCGGGGGTaGCATTTAGTGGCGGGCTCA | + |
Preference number: 4 (lower is better) Translates to: TTPSSKLLQALRVNHQGSRLPRG*HLVAGS Trigger: TGAGCCCGCCACTAAATGGCACCCCCGCGGCAATCT...GGACCCCTGGTGGTTCACTCTTAGAGCCTGCAAAAGCTTTGAGCTGGGTGTGGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS-3UTR CCA 90 bp | ATTGAGGGGCCAGGAACCAGCACAGCCTCTGGAGTTTTCAATGTCTTCTACCCTGTCGCAGCTGCTGCTTaGGGCCCCTTCTCGGCGTTC | + |
Preference number: 4 (lower is better) Translates to: IEGPGTSTASGVFNVFYPVAAAA*GPFSAF Trigger: GAACGCCGAGAAGGGGCCCCAAGCAGCAGCTGCGAC...AGGGTAGAAGACATTGAAAACTCCAGAGGCTGTGCTGGTTCCTGGCCCCTCAAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS-3UTR TCA 90 bp | ACCACACCCAGCTCAAAGCTTTTGCAGGCTCTAAGAGTGAACCACCAGGGGTCCCAATGGCGTACTCTCTaGAGGTCACTTCGCGCACGG | + |
Preference number: 4 (lower is better) Translates to: TTPSSKLLQALRVNHQGSQWRTL*RSLRAR Trigger: CCGTGCGCGAAGTGACCTTCAGAGAGTACGCCATTG...GGACCCCTGGTGGTTCACTCTTAGAGCCTGCAAAAGCTTTGAGCTGGGTGTGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS-3UTR CCA 90 bp | ATTGAGGGGCCAGGAACCAGCACAGCCTCTGGAGTTTTCAATGTCTTCTACCCTGCCTTGTCCTCAGTGTaGCCGGAAGACGACTCGGGG | + |
Preference number: 4 (lower is better) Translates to: IEGPGTSTASGVFNVFYPALSSV*PEDDSG Trigger: CCCCGAGTCGTCTTCCGGCCACACTGAGGACAAGGC...AGGGTAGAAGACATTGAAAACTCCAGAGGCTGTGCTGGTTCCTGGCCCCTCAAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS-3UTR GCA 90 bp | CTCAAAGCTTTTGCAGGCTCTAAGAGTGAACCACCAGGGGTCCCAAACCATTCAAAGGGCAGCGCTTTTTaGGGGTGCGTTGGCCACCGG | + |
Preference number: 4 (lower is better) Translates to: LKAFAGSKSEPPGVPNHSKGSAF*GCVGHR Trigger: CCGGTGGCCAACGCACCCGCAAAAAGCGCTGCCCTT...TGAATGGTTTGGGACCCCTGGTGGTTCACTCTTAGAGCCTGCAAAAGCTTTGAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS-3UTR CCA 90 bp | CAAGTCGCAATGTGGCTTGACCTTGTCAAGGGCAAAATCTGCATATTATTTCACGCACGCCGGCCGCGCTaGGCGCCTGCAGACAGTCTC | + |
Preference number: 4 (lower is better) Translates to: QVAMWLDLVKGKICILFHARRPR*APADSL Trigger: GAGACTGTCTGCAGGCGCCCAGCGCGGCCGGCGTGC...GTGAAATAATATGCAGATTTTGCCCTTGACAAGGTCAAGCCACATTGCGACTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS-3UTR CCA 90 bp | CTCAAAGCTTTTGCAGGCTCTAAGAGTGAACCACCAGGGGTCCCAAACCATTCAGGTGGTGGTAGACGTTaGCCGAGCTCTTGGCCAGCA | + |
Preference number: 4 (lower is better) Translates to: LKAFAGSKSEPPGVPNHSGGGRR*PSSWPA Trigger: TGCTGGCCAAGAGCTCGGCCAACGTCTACCACCACC...TGAATGGTTTGGGACCCCTGGTGGTTCACTCTTAGAGCCTGCAAAAGCTTTGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS-3UTR GCA 90 bp | CTCAAAGCTTTTGCAGGCTCTAAGAGTGAACCACCAGGGGTCCCAAACCATTCAGCAGAACGCCGTTCCTaGCCACCGTGCTATAGAAAT | + |
Preference number: 4 (lower is better) Translates to: LKAFAGSKSEPPGVPNHSAERRS*PPCYRN Trigger: ATTTCTATAGCACGGTGGGCAGGAACGGCGTTCTGC...TGAATGGTTTGGGACCCCTGGTGGTTCACTCTTAGAGCCTGCAAAAGCTTTGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS-3UTR GCA 90 bp | CTCTCTCTCCCTTTTCACAGCCACCTTTTGGTTAACTGTCTTTCACATTACTTTTGCAGACAGTCTCTGTaGACGAGCTCCTCCGCGGAG | + |
Preference number: 4 (lower is better) Translates to: LSLPFHSHLLVNCLSHYFCRQSL*TSSSAE Trigger: CTCCGCGGAGGAGCTCGTGCACAGAGACTGTCTGCA...AAAGTAATGTGAAAGACAGTTAACCAAAAGGTGGCTGTGAAAAGGGAGAGAGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS-3UTR GCA 90 bp | GCAATGTGGCTTGACCTTGTCAAGGGCAAAATCTGCATATTATTTCACATGTATAGCGCTTTTTGCGGGTaGGTTGGCCACCGGAGCCAC | + |
Preference number: 4 (lower is better) Translates to: AMWLDLVKGKICILFHMYSAFCG*VGHRSH Trigger: GTGGCTCCGGTGGCCAACGCACCCGCAAAAAGCGCT...ATACATGTGAAATAATATGCAGATTTTGCCCTTGACAAGGTCAAGCCACATTGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS-3UTR CCA 90 bp | GTCTTTCACATTACTTTTGGAAAGCAACCCCAGCCTGAATCTCTAGGAGTCATCGTAGGAGTATGTCATTaGGCGCGAAGACGGGGTCTG | + |
Preference number: 4 (lower is better) Translates to: VFHITFGKQPQPESLGVIVGVCH*ARRRGL Trigger: CAGACCCCGTCTTCGCGCCCAATGACATACTCCTAC...GATGACTCCTAGAGATTCAGGCTGGGGTTGCTTTCCAAAAGTAATGTGAAAGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS-3UTR CCA 90 bp | GCAATGTGGCTTGACCTTGTCAAGGGCAAAATCTGCATATTATTTCACATGTATCTGGTCGAAAGCCTGTaGCAGAACGCCGTTCCTGCC | + |
Preference number: 4 (lower is better) Translates to: AMWLDLVKGKICILFHMYLVESL*QNAVPA Trigger: GGCAGGAACGGCGTTCTGCCACAGGCTTTCGACCAG...ATACATGTGAAATAATATGCAGATTTTGCCCTTGACAAGGTCAAGCCACATTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS-3UTR GCA 90 bp | CTCTCTCTCCCTTTTCACAGCCACCTTTTGGTTAACTGTCTTTCACATTACTTTCGAGGTTTTCCGGGGTaGCGTAAGCCGTCTCGAAAA | + |
Preference number: 4 (lower is better) Translates to: LSLPFHSHLLVNCLSHYFRGFPG*RKPSRK Trigger: TTTTCGAGACGGCTTACGGCACCCCGGAAAACCTCG...AAAGTAATGTGAAAGACAGTTAACCAAAAGGTGGCTGTGAAAAGGGAGAGAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS-3UTR CCA 90 bp | CAAGTCGCAATGTGGCTTGACCTTGTCAAGGGCAAAATCTGCATATTATTTCACGCCGTCTCGAAAAACTaGTCGAAAGCCTGTGGCAGA | + |
Preference number: 4 (lower is better) Translates to: QVAMWLDLVKGKICILFHAVSKN*SKACGR Trigger: TCTGCCACAGGCTTTCGACCAGTTTTTCGAGACGGC...GTGAAATAATATGCAGATTTTGCCCTTGACAAGGTCAAGCCACATTGCGACTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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3UTR CAA 72 bp | ACACCAAATCCAAGTTTCCTTAATGTGGTGAAGAGTTaGCCAAACTGTAGCCCTCCGCAGGCATTTCCTGTA | + |
Preference number: 4 (lower is better) Translates to: TPNPSFLNVVKS*PNCSPPQAFPV Trigger: TACAGGAAATGCCTGCGGAGGGCTACAGTTTGGCAAACTCTTCACCACATTAAGGAAACTTGGATTTGGTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS-3UTR CCA 90 bp | CAAGTCGCAATGTGGCTTGACCTTGTCAAGGGCAAAATCTGCATATTATTTCACAAAAAGAAGGGAGGCTaGAGAAATCTGGACCCGAGA | + |
Preference number: 4 (lower is better) Translates to: QVAMWLDLVKGKICILFHKKKGG*RNLDPR Trigger: TCTCGGGTCCAGATTTCTCCAGCCTCCCTTCTTTTT...GTGAAATAATATGCAGATTTTGCCCTTGACAAGGTCAAGCCACATTGCGACTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS-3UTR CCA 90 bp | GCAATGTGGCTTGACCTTGTCAAGGGCAAAATCTGCATATTATTTCACATGTATGTAGTAAGTACAACTTaGCAAATACATGTTAGAGGA | + |
Preference number: 4 (lower is better) Translates to: AMWLDLVKGKICILFHMYVVSTT*QIHVRG Trigger: TCCTCTAACATGTATTTGCCAAGTTGTACTTACTAC...ATACATGTGAAATAATATGCAGATTTTGCCCTTGACAAGGTCAAGCCACATTGC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS CCA 90 bp | CGCCGCCACCGCCGCCGTCCGAACTTGAAGTTGCCGGCGCGCCCGTaGCCGCCGCCGCCACCGCCGCAGCGGAGGTCGCAGCTGCTGCTT | + |
Preference number: 5 (lower is better) Translates to: RRHRRRPNLKLPARP*PPPPPPQRRSQLLL Trigger: AAGCAGCAGCTGCGACCTCCGCTGCGGCGGTGGCGGCGGCGGCCACGGGCGCGCCGGCAACTTCAAGTTCGGACGGCGGCGGTGGCGGCG 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS CCA 90 bp | ACGAGACGGCGGGGGTGGGGTGGTGGTAGACGTTGGCCGAGCTCTTaGCCAGCACGTCGCCAGGCACGCCGGCCGCGCTGGGCGCCTGCA | + |
Preference number: 5 (lower is better) Translates to: TRRRGWGGGRRWPSS*PARRQARRPRWAPA Trigger: TGCAGGCGCCCAGCGCGGCCGGCGTGCCTGGCGACGTGCTGGCCAAGAGCTCGGCCAACGTCTACCACCACCCCACCCCCGCCGTCTCGT 74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS GCA 90 bp | CACCGGCCTTGTCCTCAGTGTGGCCGGAAGACGACTCGGGGCTGCTaGTGCTCTCGGGTCGCCGCCGTCGCTCCTTCTCCTCCGCCGCCG | + |
Preference number: 5 (lower is better) Translates to: HRPCPQCGRKTTRGC*CSRVAAVAPSPPPP Trigger: CGGCGGCGGAGGAGAAGGAGCGACGGCGGCGACCCGAGAGCAGCAGCAGCCCCGAGTCGTCTTCCGGCCACACTGAGGACAAGGCCGGTG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS CCA 90 bp | TGGCCGAGCTCTTGGCCAGCACGTCGCCAGGCACGCCGGCCGCGCTaGGCGCCTGCAGACAGTCTCTGTGCACGAGCTCCTCCGCGGAGT | + |
Preference number: 5 (lower is better) Translates to: WPSSWPARRQARRPR*APADSLCARAPPRS Trigger: ACTCCGCGGAGGAGCTCGTGCACAGAGACTGTCTGCAGGCGCCCAGCGCGGCCGGCGTGCCTGGCGACGTGCTGGCCAAGAGCTCGGCCA 72% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS GCA 90 bp | AGCCACCGGCCTTGTCCTCAGTGTGGCCGGAAGACGACTCGGGGCTaGTGCTGCTCTCGGGTCGCCGCCGTCGCTCCTTCTCCTCCGCCG | + |
Preference number: 5 (lower is better) Translates to: SHRPCPQCGRKTTRG*CCSRVAAVAPSPPP Trigger: CGGCGGAGGAGAAGGAGCGACGGCGGCGACCCGAGAGCAGCAGCAGCCCCGAGTCGTCTTCCGGCCACACTGAGGACAAGGCCGGTGGCT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS CCA 90 bp | TTGCGGGTGCGTTGGCCACCGGAGCCACCGGCCTTGTCCTCAGTGTaGCCGGAAGACGACTCGGGGCTGCTGCTGCTCTCGGGTCGCCGC | + |
Preference number: 5 (lower is better) Translates to: LRVRWPPEPPALSSV*PEDDSGLLLLSGRR Trigger: GCGGCGACCCGAGAGCAGCAGCAGCCCCGAGTCGTCTTCCGGCCACACTGAGGACAAGGCCGGTGGCTCCGGTGGCCAACGCACCCGCAA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS-3UTR CAA 90 bp | GAGACCTGGGGGTGGGCAGGCTCTGTGCAGAGGGTCTTGAGCGGGTGGCCTCCTACGTTGGCCGAGCTCTaGGCCAGCACGTCGCCAGGC | + |
Preference number: 5 (lower is better) Translates to: ETWGWAGSVQRVLSGWPPTLAEL*ASTSPG Trigger: GCCTGGCGACGTGCTGGCCAAGAGCTCGGCCAACGT...AGGAGGCCACCCGCTCAAGACCCTCTGCACAGAGCCTGCCCACCCCCAGGTCTC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS-3UTR CAA 90 bp | GAGACCTGGGGGTGGGCAGGCTCTGTGCAGAGGGTCTTGAGCGGGTGGCCTCCTGGTCGCAGCTGCTGCTaGGGGCCCCTTCTCGGCGTT | + |
Preference number: 5 (lower is better) Translates to: ETWGWAGSVQRVLSGWPPGRSCC*GPLLGV Trigger: AACGCCGAGAAGGGGCCCCAAGCAGCAGCTGCGACC...AGGAGGCCACCCGCTCAAGACCCTCTGCACAGAGCCTGCCCACCCCCAGGTCTC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS CCA 90 bp | TATAGAAATTGGACGAGACGGCGGGGGTGGGGTGGTGGTAGACGTTaGCCGAGCTCTTGGCCAGCACGTCGCCAGGCACGCCGGCCGCGC | + |
Preference number: 5 (lower is better) Translates to: YRNWTRRRGWGGGRR*PSSWPARRQARRPR Trigger: GCGCGGCCGGCGTGCCTGGCGACGTGCTGGCCAAGAGCTCGGCCAACGTCTACCACCACCCCACCCCCGCCGTCTCGTCCAATTTCTATA 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS-3UTR CAA 90 bp | AGCCCCTCACAGCCAAAGGCCAAGGACCCACTGGCCAGGCCTGCTGCTCTGCTGCTTTTTGCGGGTGCGTaGGCCACCGGAGCCACCGGC | + |
Preference number: 5 (lower is better) Translates to: SPSQPKAKDPLARPAALLLFAGA*ATGATG Trigger: GCCGGTGGCTCCGGTGGCCAACGCACCCGCAAAAAG...CAGCAGAGCAGCAGGCCTGGCCAGTGGGTCCTTGGCCTTTGGCTGTGAGGGGCT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS CCA 90 bp | AAGCCTGTGGCAGAACGCCGTTCCTGCCCACCGTGCTATAGAAATTaGACGAGACGGCGGGGGTGGGGTGGTGGTAGACGTTGGCCGAGC | + |
Preference number: 5 (lower is better) Translates to: KPVAERRSCPPCYRN*TRRRGWGGGRRWPS Trigger: GCTCGGCCAACGTCTACCACCACCCCACCCCCGCCGTCTCGTCCAATTTCTATAGCACGGTGGGCAGGAACGGCGTTCTGCCACAGGCTT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS-3UTR CAA 90 bp | ATTGAGGGGCCAGGAACCAGCACAGCCTCTGGAGTTTTCAATGTCTTCTACCCTCCGGAGCCACCGGCCTaGTCCTCAGTGTGGCCGGAA | + |
Preference number: 5 (lower is better) Translates to: IEGPGTSTASGVFNVFYPPEPPA*SSVWPE Trigger: TTCCGGCCACACTGAGGACAAGGCCGGTGGCTCCGG...AGGGTAGAAGACATTGAAAACTCCAGAGGCTGTGCTGGTTCCTGGCCCCTCAAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS-3UTR CAA 90 bp | CTCCTTAGGGTTTGGCAGGGGGCCCAATCTCCAGTGACCACACCCAGCTCAAAGAGTAGGAGTATGTCATaGGGCGCGAAGACGGGGTCT | + |
Preference number: 5 (lower is better) Translates to: LLRVWQGAQSPVTTPSSKSRSMS*GAKTGS Trigger: AGACCCCGTCTTCGCGCCCAATGACATACTCCTACT...CTTTGAGCTGGGTGTGGTCACTGGAGATTGGGCCCCCTGCCAAACCCTAAGGAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS CCA 90 bp | AGGGAGGCTGGAGAAATCTGGACCCGAGACGTAGTAAGTACAACTTaGCAAATACATGTTAGAGGAGCAGGGACCACGCTCATCAAAATC | + |
Preference number: 5 (lower is better) Translates to: REAGEIWTRDVVSTT*QIHVRGAGTTLIKI Trigger: GATTTTGATGAGCGTGGTCCCTGCTCCTCTAACATGTATTTGCCAAGTTGTACTTACTACGTCTCGGGTCCAGATTTCTCCAGCCTCCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS CCA 72 bp | CGCCGCCGTCCGAACTTGAAGTTGCCGGCGCGCCCGTaGCCGCCGCCGCCACCGCCGCAGCGGAGGTCGCAG | + |
Preference number: 6 (lower is better) Translates to: RRRPNLKLPARP*PPPPPPQRRSQ Trigger: CTGCGACCTCCGCTGCGGCGGTGGCGGCGGCGGCCACGGGCGCGCCGGCAACTTCAAGTTCGGACGGCGGCG 79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS CCA 72 bp | CGGGGGTGGGGTGGTGGTAGACGTTGGCCGAGCTCTTaGCCAGCACGTCGCCAGGCACGCCGGCCGCGCTGG | + |
Preference number: 6 (lower is better) Translates to: RGWGGGRRWPSS*PARRQARRPRW Trigger: CCAGCGCGGCCGGCGTGCCTGGCGACGTGCTGGCCAAGAGCTCGGCCAACGTCTACCACCACCCCACCCCCG 75% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS GCA 72 bp | AGCACGTCGCCAGGCACGCCGGCCGCGCTGGGCGCCTaGAGACAGTCTCTGTGCACGAGCTCCTCCGCGGAG | + |
Preference number: 6 (lower is better) Translates to: STSPGTPAALGA*RQSLCTSSSAE Trigger: CTCCGCGGAGGAGCTCGTGCACAGAGACTGTCTGCAGGCGCCCAGCGCGGCCGGCGTGCCTGGCGACGTGCT 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS GCA 72 bp | CCTCAGTGTGGCCGGAAGACGACTCGGGGCTGCTGCTaGTCTCGGGTCGCCGCCGTCGCTCCTTCTCCTCCG | + |
Preference number: 6 (lower is better) Translates to: PQCGRKTTRGCC*SRVAAVAPSPP Trigger: CGGAGGAGAAGGAGCGACGGCGGCGACCCGAGAGCAGCAGCAGCCCCGAGTCGTCTTCCGGCCACACTGAGG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS CCA 72 bp | TCTTGGCCAGCACGTCGCCAGGCACGCCGGCCGCGCTaGGCGCCTGCAGACAGTCTCTGTGCACGAGCTCCT | + |
Preference number: 6 (lower is better) Translates to: SWPARRQARRPR*APADSLCARAP Trigger: AGGAGCTCGTGCACAGAGACTGTCTGCAGGCGCCCAGCGCGGCCGGCGTGCCTGGCGACGTGCTGGCCAAGA 71% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS CCA 72 bp | CGTTGGCCACCGGAGCCACCGGCCTTGTCCTCAGTGTaGCCGGAAGACGACTCGGGGCTGCTGCTGCTCTCG | + |
Preference number: 6 (lower is better) Translates to: RWPPEPPALSSV*PEDDSGLLLLS Trigger: CGAGAGCAGCAGCAGCCCCGAGTCGTCTTCCGGCCACACTGAGGACAAGGCCGGTGGCTCCGGTGGCCAACG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS GCA 72 bp | TGTCCTCAGTGTGGCCGGAAGACGACTCGGGGCTGCTaGTGCTCTCGGGTCGCCGCCGTCGCTCCTTCTCCT | + |
Preference number: 6 (lower is better) Translates to: CPQCGRKTTRGC*CSRVAAVAPSP Trigger: AGGAGAAGGAGCGACGGCGGCGACCCGAGAGCAGCAGCAGCCCCGAGTCGTCTTCCGGCCACACTGAGGACA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS GCA 72 bp | CCTTGTCCTCAGTGTGGCCGGAAGACGACTCGGGGCTaGTGCTGCTCTCGGGTCGCCGCCGTCGCTCCTTCT | + |
Preference number: 6 (lower is better) Translates to: PCPQCGRKTTRG*CCSRVAAVAPS Trigger: AGAAGGAGCGACGGCGGCGACCCGAGAGCAGCAGCAGCCCCGAGTCGTCTTCCGGCCACACTGAGGACAAGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS CAA 72 bp | TTTTTGCGGGTGCGTTGGCCACCGGAGCCACCGGCCTaGTCCTCAGTGTGGCCGGAAGACGACTCGGGGCTG | + |
Preference number: 6 (lower is better) Translates to: FLRVRWPPEPPA*SSVWPEDDSGL Trigger: CAGCCCCGAGTCGTCTTCCGGCCACACTGAGGACAAGGCCGGTGGCTCCGGTGGCCAACGCACCCGCAAAAA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS GCA 72 bp | CGAAAGCCTGTGGCAGAACGCCGTTCCTGCCCACCGTaGTATAGAAATTGGACGAGACGGCGGGGGTGGGGT | + |
Preference number: 6 (lower is better) Translates to: RKPVAERRSCPP*YRNWTRRRGWG Trigger: ACCCCACCCCCGCCGTCTCGTCCAATTTCTATAGCACGGTGGGCAGGAACGGCGTTCTGCCACAGGCTTTCG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS CCA 72 bp | CCACCGTGCTATAGAAATTGGACGAGACGGCGGGGGTaGGGTGGTGGTAGACGTTGGCCGAGCTCTTGGCCA | + |
Preference number: 6 (lower is better) Translates to: PPCYRNWTRRRG*GGGRRWPSSWP Trigger: TGGCCAAGAGCTCGGCCAACGTCTACCACCACCCCACCCCCGCCGTCTCGTCCAATTTCTATAGCACGGTGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |
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CDS CCA 72 bp | GGAGAAATCTGGACCCGAGACGTAGTAAGTACAACTTaGCAAATACATGTTAGAGGAGCAGGGACCACGCTC | + |
Preference number: 6 (lower is better) Translates to: GEIWTRDVVSTT*QIHVRGAGTTL Trigger: GAGCGTGGTCCCTGCTCCTCTAACATGTATTTGCCAAGTTGTACTTACTACGTCTCGGGTCCAGATTTCTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048026.10 |