Pregenerated sensors for HOXA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029844Ensembl transcript IDs: ENSMUST00000000964.6, ENSMUST00000120363.2
Found 116 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAGAGTTGGGCTGGAGTAGCCTCAGTGGGAGGTAGTCAGAGTGTCTaGGGTAGACGATGCCGGAGAAGGGGCACTGGGCGAGGGGCTAGA | + |
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Preference number: 1 (lower is better) Translates to: QSWAGVASVGGSQSV*GRRCRRRGTGRGAR Trigger: TCTAGCCCCTCGCCCAGTGCCCCTTCTCCGGCATCGTCTACCTCAGACACTCTGACTACCTCCCACTGAGGCTACTCCAGCCCAACTCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120363.2 |
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| 3UTR CCA 90 bp | TTAAATGCAGGGTGGCCAGAGAAGCAGGAAGAATTGGTTAGAGTTTaGGAAGACCTGGCACAGGCAAAGTGCTTGGCAGGCCTTCTTAAC | + |
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Preference number: 1 (lower is better) Translates to: LNAGWPEKQEELVRV*EDLAQAKCLAGLLN Trigger: GTTAAGAAGGCCTGCCAAGCACTTTGCCTGTGCCAGGTCTTCCCAAACTCTAACCAATTCTTCCTGCTTCTCTGGCCACCCTGCATTTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| 3UTR CCA 90 bp | AAGAATTGGTTAGAGTTTGGGAAGACCTGGCACAGGCAAAGTGCTTaGCAGGCCTTCTTAACTCTGAAAGAACCAATTGAGGCCAACTTC | + |
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Preference number: 1 (lower is better) Translates to: KNWLEFGKTWHRQSA*QAFLTLKEPIEANF Trigger: GAAGTTGGCCTCAATTGGTTCTTTCAGAGTTAAGAAGGCCTGCCAAGCACTTTGCCTGTGCCAGGTCTTCCCAAACTCTAACCAATTCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| 3UTR CCA 90 bp | ACAAAATATACATTCATTGTGCCATCCATCACATTAACAATTAGCTaGAAATACACTGGATCCAGCCATGATACAAGACAGTGTGGAAGG | + |
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Preference number: 1 (lower is better) Translates to: TKYTFIVPSITLTIS*KYTGSSHDTRQCGR Trigger: CCTTCCACACTGTCTTGTATCATGGCTGGATCCAGTGTATTTCCAGCTAATTGTTAATGTGATGGATGGCACAATGAATGTATATTTTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| 3UTR CAA 90 bp | CTCTGTGAGCTGCTTGGTGGTGAAATTGGTGCGCACTGCGTTGGGTaGACCCACGTAGCCGTACTCTCCAACTTTCCCTGTTTTGGGAGG | + |
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Preference number: 2 (lower is better) Translates to: LCELLGGEIGAHCVG*THVAVLSNFPCFGR Trigger: CCTCCCAAAACAGGGAAAGTTGGAGAGTACGGCTACGTGGGTCAACCCAACGCAGTGCGCACCAATTTCACCACCAAGCAGCTCACAGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120363.2 |
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| 3UTR-3UTR TCA 90 bp | TGGGAAGACCTGGCACAGGCAAAGTGCTTGGCAGGCCTTCTTAACTCTGAAAGACACTGGATCCAGCCATaGTACAAGACAGTGTGGAAG | + |
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Preference number: 2 (lower is better) Translates to: WEDLAQAKCLAGLLNSERHWIQP*YKTVWK Trigger: CTTCCACACTGTCTTGTATCATGGCTGGATCCAGTG...TCTTTCAGAGTTAAGAAGGCCTGCCAAGCACTTTGCCTGTGCCAGGTCTTCCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| 3UTR-3UTR GCA 90 bp | TGGCCAGGAGCTCCCCAGATGGGACGAGAAAGGAAGAGAGAGTCTGTAAAGAAATCCAGCTCTGTGAGCTaGTTGGTGGTGAAATTGGTG | + |
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Preference number: 2 (lower is better) Translates to: WPGAPQMGRERKRESVKKSSSVS*LVVKLV Trigger: CACCAATTTCACCACCAAGCAGCTCACAGAGCTGGA...TTTCTTTACAGACTCTCTCTTCCTTTCTCGTCCCATCTGGGGAGCTCCTGGCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120363.2 |
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| 3UTR-3UTR CCA 90 bp | AAACTCTGCTCTGGACCACATCACTCCAGGATCTCAGAGCTGTTCATGATTGTACAGGAGCTCCCCAGATaGGACGAGAAAGGAAGAGAG | + |
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Preference number: 2 (lower is better) Translates to: KLCSGPHHSRISELFMIVQELPR*DEKGRE Trigger: CTCTCTTCCTTTCTCGTCCCATCTGGGGAGCTCCTG...TACAATCATGAACAGCTCTGAGATCCTGGAGTGATGTGGTCCAGAGCAGAGTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| 3UTR-3UTR CCA 90 bp | TGGCCAGGAGCTCCCCAGATGGGACGAGAAAGGAAGAGAGAGTCTGTAAAGAAAGCTAAGAATGTGCTTTaGGTAAGAAATCCCAGCCCA | + |
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Preference number: 2 (lower is better) Translates to: WPGAPQMGRERKRESVKKAKNVL*VRNPSP Trigger: TGGGCTGGGATTTCTTACCCAAAGCACATTCTTAGC...TTTCTTTACAGACTCTCTCTTCCTTTCTCGTCCCATCTGGGGAGCTCCTGGCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| 3UTR-3UTR CCA 90 bp | CCATCCATCACATTAACAATTAGCTGGAAATACACTGGATCCAGCCATGATACACCTGGGCTGCAGAGTTaGGCTGGAGTAGCCTCAGTG | + |
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Preference number: 2 (lower is better) Translates to: PSITLTISWKYTGSSHDTPGLQS*AGVASV Trigger: CACTGAGGCTACTCCAGCCCAACTCTGCAGCCCAGG...TGTATCATGGCTGGATCCAGTGTATTTCCAGCTAATTGTTAATGTGATGGATGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120363.2 |
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| 3UTR-3UTR TCA 90 bp | TGGGAAGACCTGGCACAGGCAAAGTGCTTGGCAGGCCTTCTTAACTCTGAAAGAAAAATCTCACAACAGTaGAGGAAAGGATGTTGGGAG | + |
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Preference number: 2 (lower is better) Translates to: WEDLAQAKCLAGLLNSERKISQQ*RKGCWE Trigger: CTCCCAACATCCTTTCCTTCACTGTTGTGAGATTTT...TCTTTCAGAGTTAAGAAGGCCTGCCAAGCACTTTGCCTGTGCCAGGTCTTCCCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| 3UTR-3UTR GCA 90 bp | AAACTCTGCTCTGGACCACATCACTCCAGGATCTCAGAGCTGTTCATGATTGTAAAGACCCGTAAACTCTaGTCTGGACCACATCACTCC | + |
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Preference number: 2 (lower is better) Translates to: KLCSGPHHSRISELFMIVKTRKL*SGPHHS Trigger: GGAGTGATGTGGTCCAGAGCAGAGTTTACGGGTCTT...TACAATCATGAACAGCTCTGAGATCCTGGAGTGATGTGGTCCAGAGCAGAGTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| 3UTR-3UTR GCA 90 bp | TTGAATGAAAGAGGTTTTCTTCTTTCGCCCATAATCACACATGAACTGTACCAGCCGTTTTCTCATCGCTaGCAGGAGGAGTGGCAGGGG | + |
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Preference number: 2 (lower is better) Translates to: LNERGFLLSPIITHELYQPFSHR*QEEWQG Trigger: CCCCTGCCACTCCTCCTGGCAGCGATGAGAAAACGG...CTGGTACAGTTCATGTGTGATTATGGGCGAAAGAAGAAAACCTCTTTCATTCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120363.2 |
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| 3UTR-3UTR TCA 90 bp | AGACATCTTAAGACCCGTAAACTCTGCTCTGGACCACATCACTCCAGGATCTCATCTGAAAGAACCAATTaGGGCCAACTTCTGAGGCAT | + |
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Preference number: 2 (lower is better) Translates to: RHLKTRKLCSGPHHSRISSERTN*GQLLRH Trigger: ATGCCTCAGAAGTTGGCCTCAATTGGTTCTTTCAGA...TGAGATCCTGGAGTGATGTGGTCCAGAGCAGAGTTTACGGGTCTTAAGATGTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| 3UTR-3UTR CCA 90 bp | AGACATCTTAAGACCCGTAAACTCTGCTCTGGACCACATCACTCCAGGATCTCAGGCTCCAGAATTCTCTaGAAATACCTTATCTTGGCC | + |
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Preference number: 2 (lower is better) Translates to: RHLKTRKLCSGPHHSRISGSRIL*KYLILA Trigger: GGCCAAGATAAGGTATTTCCAGAGAATTCTGGAGCC...TGAGATCCTGGAGTGATGTGGTCCAGAGCAGAGTTTACGGGTCTTAAGATGTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| 3UTR-3UTR TCA 90 bp | ATCTTAAGACCCGTAAACTCTGCTCTGGACCACATCACTCCAGGATCTCAGAGCGCTAGATTTCTCAGATaGTTCTTCCGTTTTCTCATC | + |
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Preference number: 2 (lower is better) Translates to: ILRPVNSALDHITPGSQSARFLR*FFRFLI Trigger: GATGAGAAAACGGAAGAATCATCTGAGAAATCTAGC...GCTCTGAGATCCTGGAGTGATGTGGTCCAGAGCAGAGTTTACGGGTCTTAAGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120363.2 |
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| 3UTR-3UTR GCA 90 bp | GGGACATCAGAACATTGTGCGACATGCAGAAGACTAGTCACGAATCACACAAAAGAGATGCCTCCTTCCTaGAAATGTCTGATGGCAAAG | + |
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Preference number: 2 (lower is better) Translates to: GTSEHCATCRRLVTNHTKEMPPS*KCLMAK Trigger: CTTTGCCATCAGACATTTGCAGGAAGGAGGCATCTC...TTTTGTGTGATTCGTGACTAGTCTTCTGCATGTCGCACAATGTTCTGATGTCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| 3UTR-3UTR CCA 90 bp | AAACTCTGCTCTGGACCACATCACTCCAGGATCTCAGAGCTGTTCATGATTGTAGCTAAGAATGTGCTTTaGGTAAGAAATCCCAGCCCA | + |
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Preference number: 2 (lower is better) Translates to: KLCSGPHHSRISELFMIVAKNVL*VRNPSP Trigger: TGGGCTGGGATTTCTTACCCAAAGCACATTCTTAGC...TACAATCATGAACAGCTCTGAGATCCTGGAGTGATGTGGTCCAGAGCAGAGTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| 3UTR-3UTR CCA 90 bp | TGGCCAGGAGCTCCCCAGATGGGACGAGAAAGGAAGAGAGAGTCTGTAAAGAAATACTTAAGGGCTAGGTaGAGAAGAACAATACATAGA | + |
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Preference number: 2 (lower is better) Translates to: WPGAPQMGRERKRESVKKYLRAR*RRTIHR Trigger: TCTATGTATTGTTCTTCTCCACCTAGCCCTTAAGTA...TTTCTTTACAGACTCTCTCTTCCTTTCTCGTCCCATCTGGGGAGCTCCTGGCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| 3UTR-3UTR GCA 90 bp | AAACTCTGCTCTGGACCACATCACTCCAGGATCTCAGAGCTGTTCATGATTGTAGAACATTGTGCGACATaGAGAAGACTAGTCACGAAT | + |
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Preference number: 2 (lower is better) Translates to: KLCSGPHHSRISELFMIVEHCAT*RRLVTN Trigger: ATTCGTGACTAGTCTTCTGCATGTCGCACAATGTTC...TACAATCATGAACAGCTCTGAGATCCTGGAGTGATGTGGTCCAGAGCAGAGTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| 3UTR-3UTR GCA 90 bp | TACTTTTATTACAGACATCTTAAGACCCGTAAACTCTGCTCTGGACCACATCACTTCTCACGCTTCTTCTaGTTCATGCGGCGATTCTGG | + |
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Preference number: 2 (lower is better) Translates to: YFYYRHLKTRKLCSGPHHFSRFF*FMRRFW Trigger: CCAGAATCGCCGCATGAAGCAGAAGAAGCGTGAGAA...GTGATGTGGTCCAGAGCAGAGTTTACGGGTCTTAAGATGTCTGTAATAAAAGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120363.2 |
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| 3UTR-3UTR CCA 90 bp | CCATCCATCACATTAACAATTAGCTGGAAATACACTGGATCCAGCCATGATACAGGAAATACCTTATCTTaGCCAGGAGCTCCCCAGATG | + |
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Preference number: 2 (lower is better) Translates to: PSITLTISWKYTGSSHDTGNTLS*PGAPQM Trigger: CATCTGGGGAGCTCCTGGCCAAGATAAGGTATTTCC...TGTATCATGGCTGGATCCAGTGTATTTCCAGCTAATTGTTAATGTGATGGATGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| 3UTR-3UTR CCA 90 bp | CCATCCATCACATTAACAATTAGCTGGAAATACACTGGATCCAGCCATGATACACACAGGCAAAGTGCTTaGCAGGCCTTCTTAACTCTG | + |
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Preference number: 2 (lower is better) Translates to: PSITLTISWKYTGSSHDTHRQSA*QAFLTL Trigger: CAGAGTTAAGAAGGCCTGCCAAGCACTTTGCCTGTG...TGTATCATGGCTGGATCCAGTGTATTTCCAGCTAATTGTTAATGTGATGGATGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| 3UTR-3UTR CCA 90 bp | CAGGATCTCAGAGCTGTTCATGATTGTACAGTAAATGGAGACTATCATAGGCTCGAATTGGTTAGAGTTTaGGAAGACCTGGCACAGGCA | + |
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Preference number: 2 (lower is better) Translates to: QDLRAVHDCTVNGDYHRLELVRV*EDLAQA Trigger: TGCCTGTGCCAGGTCTTCCCAAACTCTAACCAATTC...GAGCCTATGATAGTCTCCATTTACTGTACAATCATGAACAGCTCTGAGATCCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| 3UTR-3UTR TCA 90 bp | ATAGATAAAAGGAGAGATGCCTCCTTCCTGCAAATGTCTGATGGCAAAGGGAACGCATCTGACTCTGTTTaGATGAAAGAGGTTTTCTTC | + |
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Preference number: 2 (lower is better) Translates to: IDKRRDASFLQMSDGKGNASDSV*MKEVFF Trigger: GAAGAAAACCTCTTTCATTCAAACAGAGTCAGATGC...GTTCCCTTTGCCATCAGACATTTGCAGGAAGGAGGCATCTCTCCTTTTATCTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| 3UTR-3UTR GCA 90 bp | TTGAATGAAAGAGGTTTTCTTCTTTCGCCCATAATCACACATGAACTGTACCAGGAGATGCCTCCTTCCTaGAAATGTCTGATGGCAAAG | + |
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Preference number: 2 (lower is better) Translates to: LNERGFLLSPIITHELYQEMPPS*KCLMAK Trigger: CTTTGCCATCAGACATTTGCAGGAAGGAGGCATCTC...CTGGTACAGTTCATGTGTGATTATGGGCGAAAGAAGAAAACCTCTTTCATTCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| 3UTR-3UTR CCA 90 bp | ACTCTGCTCTGGACCACATCACTCCAGGATCTCAGAGCTGTTCATGATTGTACAAAGAATGAATACCTTTaGGTTACAAATGATCCAGCA | + |
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Preference number: 2 (lower is better) Translates to: TLLWTTSLQDLRAVHDCTKNEYL*VTNDPA Trigger: TGCTGGATCATTTGTAACCCAAAGGTATTCATTCTT...TGTACAATCATGAACAGCTCTGAGATCCTGGAGTGATGTGGTCCAGAGCAGAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| 3UTR-3UTR TCA 90 bp | GATCTCAGAGCTGTTCATGATTGTACAGTAAATGGAGACTATCATAGGCTCACAAAAATCTCACAACAGTaGAGGAAAGGATGTTGGGAG | + |
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Preference number: 2 (lower is better) Translates to: DLRAVHDCTVNGDYHRLTKISQQ*RKGCWE Trigger: CTCCCAACATCCTTTCCTTCACTGTTGTGAGATTTT...TGTGAGCCTATGATAGTCTCCATTTACTGTACAATCATGAACAGCTCTGAGATC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| 3UTR-3UTR TCA 90 bp | CCATCCATCACATTAACAATTAGCTGGAAATACACTGGATCCAGCCATGATACAGAACTGTACCAGTTTTaGGAATTTGTCCACCCTGTT | + |
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Preference number: 2 (lower is better) Translates to: PSITLTISWKYTGSSHDTELYQF*EFVHPV Trigger: AACAGGGTGGACAAATTCTCAAAACTGGTACAGTTC...TGTATCATGGCTGGATCCAGTGTATTTCCAGCTAATTGTTAATGTGATGGATGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| 3UTR-3UTR TCA 90 bp | GATCTCAGAGCTGTTCATGATTGTACAGTAAATGGAGACTATCATAGGCTCACAGAACTGTACCAGTTTTaGGAATTTGTCCACCCTGTT | + |
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Preference number: 2 (lower is better) Translates to: DLRAVHDCTVNGDYHRLTELYQF*EFVHPV Trigger: AACAGGGTGGACAAATTCTCAAAACTGGTACAGTTC...TGTGAGCCTATGATAGTCTCCATTTACTGTACAATCATGAACAGCTCTGAGATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| 3UTR-3UTR TCA 90 bp | ATAGATAAAAGGAGAGATGCCTCCTTCCTGCAAATGTCTGATGGCAAAGGGAACCTGACTCTGTTTGAATaGAAGAGGTTTTCTTCTTTC | + |
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Preference number: 2 (lower is better) Translates to: IDKRRDASFLQMSDGKGNLTLFE*KRFSSF Trigger: GAAAGAAGAAAACCTCTTTCATTCAAACAGAGTCAG...GTTCCCTTTGCCATCAGACATTTGCAGGAAGGAGGCATCTCTCCTTTTATCTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| 3UTR-3UTR CCA 90 bp | GATCTCAGAGCTGTTCATGATTGTACAGTAAATGGAGACTATCATAGGCTCACAAGAAGCAGGAAGAATTaGTTAGAGTTTGGGAAGACC | + |
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Preference number: 2 (lower is better) Translates to: DLRAVHDCTVNGDYHRLTRSRKN*LEFGKT Trigger: GGTCTTCCCAAACTCTAACCAATTCTTCCTGCTTCT...TGTGAGCCTATGATAGTCTCCATTTACTGTACAATCATGAACAGCTCTGAGATC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| 3UTR-3UTR TCA 90 bp | CCATCCATCACATTAACAATTAGCTGGAAATACACTGGATCCAGCCATGATACAGCATCTGACTCTGTTTaGATGAAAGAGGTTTTCTTC | + |
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Preference number: 2 (lower is better) Translates to: PSITLTISWKYTGSSHDTASDSV*MKEVFF Trigger: GAAGAAAACCTCTTTCATTCAAACAGAGTCAGATGC...TGTATCATGGCTGGATCCAGTGTATTTCCAGCTAATTGTTAATGTGATGGATGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| 3UTR-3UTR CCA 90 bp | GATCTCAGAGCTGTTCATGATTGTACAGTAAATGGAGACTATCATAGGCTCACATACTTAAGGGCTAGGTaGAGAAGAACAATACATAGA | + |
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Preference number: 2 (lower is better) Translates to: DLRAVHDCTVNGDYHRLTYLRAR*RRTIHR Trigger: TCTATGTATTGTTCTTCTCCACCTAGCCCTTAAGTA...TGTGAGCCTATGATAGTCTCCATTTACTGTACAATCATGAACAGCTCTGAGATC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| 3UTR-3UTR CCA 90 bp | TACTTTTATTACAGACATCTTAAGACCCGTAAACTCTGCTCTGGACCACATCACAAGAATGAATACCTTTaGGTTACAAATGATCCAGCA | + |
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Preference number: 2 (lower is better) Translates to: YFYYRHLKTRKLCSGPHHKNEYL*VTNDPA Trigger: TGCTGGATCATTTGTAACCCAAAGGTATTCATTCTT...GTGATGTGGTCCAGAGCAGAGTTTACGGGTCTTAAGATGTCTGTAATAAAAGTA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| 3UTR TCA 72 bp | GCTGGAGTAGCCTCAGTGGGAGGTAGTCAGAGTGTCTaGGGTAGACGATGCCGGAGAAGGGGCACTGGGCGA | + |
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Preference number: 3 (lower is better) Translates to: AGVASVGGSQSV*GRRCRRRGTGR Trigger: TCGCCCAGTGCCCCTTCTCCGGCATCGTCTACCTCAGACACTCTGACTACCTCCCACTGAGGCTACTCCAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120363.2 |
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| 3UTR-3UTR CAA 90 bp | TGGGAAGACCTGGCACAGGCAAAGTGCTTGGCAGGCCTTCTTAACTCTGAAAGAGCGCACTGCGTTGGGTaGACCCACGTAGCCGTACTC | + |
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Preference number: 3 (lower is better) Translates to: WEDLAQAKCLAGLLNSERAHCVG*THVAVL Trigger: GAGTACGGCTACGTGGGTCAACCCAACGCAGTGCGC...TCTTTCAGAGTTAAGAAGGCCTGCCAAGCACTTTGCCTGTGCCAGGTCTTCCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120363.2 |
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| 3UTR GCA 72 bp | CTCTGTGAGCTGCTTGGTGGTGAAATTGGTGCGCACTaGGTTGGGTTGACCCACGTAGCCGTACTCTCCAAC | + |
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Preference number: 3 (lower is better) Translates to: LCELLGGEIGAH*VGLTHVAVLSN Trigger: GTTGGAGAGTACGGCTACGTGGGTCAACCCAACGCAGTGCGCACCAATTTCACCACCAAGCAGCTCACAGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120363.2 |
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| 3UTR-3UTR CAA 90 bp | GACCTGGCACAGGCAAAGTGCTTGGCAGGCCTTCTTAACTCTGAAAGAACCAATAGCTCTGTGAGCTGCTaGGTGGTGAAATTGGTGCGC | + |
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Preference number: 3 (lower is better) Translates to: DLAQAKCLAGLLNSERTNSSVSC*VVKLVR Trigger: GCGCACCAATTTCACCACCAAGCAGCTCACAGAGCT...ATTGGTTCTTTCAGAGTTAAGAAGGCCTGCCAAGCACTTTGCCTGTGCCAGGTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120363.2 |
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| 3UTR CCA 72 bp | ACCAAGGCTCCAGAATTCTCTGGAAATACCTTATCTTaGCCAGGAGCTCCCCAGATGGGACGAGAAAGGAAG | + |
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Preference number: 3 (lower is better) Translates to: TKAPEFSGNTLS*PGAPQMGRERK Trigger: CTTCCTTTCTCGTCCCATCTGGGGAGCTCCTGGCCAAGATAAGGTATTTCCAGAGAATTCTGGAGCCTTGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| 3UTR-3UTR CAA 90 bp | TGGCCAGGAGCTCCCCAGATGGGACGAGAAAGGAAGAGAGAGTCTGTAAAGAAACTTCTTCATGAGTCTTaGGACACTCTCTCTCCTCTA | + |
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Preference number: 3 (lower is better) Translates to: WPGAPQMGRERKRESVKKLLHES*DTLSPL Trigger: TAGAGGAGAGAGAGTGTCCAAAGACTCATGAAGAAG...TTTCTTTACAGACTCTCTCTTCCTTTCTCGTCCCATCTGGGGAGCTCCTGGCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| 3UTR-3UTR CAA 90 bp | TGGGAAGACCTGGCACAGGCAAAGTGCTTGGCAGGCCTTCTTAACTCTGAAAGAGAGAAGCAGGAAGAATaGGTTAGAGTTTGGGAAGAC | + |
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Preference number: 3 (lower is better) Translates to: WEDLAQAKCLAGLLNSEREKQEE*VRVWED Trigger: GTCTTCCCAAACTCTAACCAATTCTTCCTGCTTCTC...TCTTTCAGAGTTAAGAAGGCCTGCCAAGCACTTTGCCTGTGCCAGGTCTTCCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| 3UTR CCA 72 bp | AGAAGCAGGAAGAATTGGTTAGAGTTTGGGAAGACCTaGCACAGGCAAAGTGCTTGGCAGGCCTTCTTAACT | + |
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Preference number: 3 (lower is better) Translates to: RSRKNWLEFGKT*HRQSAWQAFLT Trigger: AGTTAAGAAGGCCTGCCAAGCACTTTGCCTGTGCCAGGTCTTCCCAAACTCTAACCAATTCTTCCTGCTTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| 3UTR TCA 72 bp | ACAGTGAAGGAAAGGATGTTGGGAGCCATCAGCAATTaGTGTGGACACCCGATGTGGATGAAGGAGTTAACT | + |
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Preference number: 3 (lower is better) Translates to: TVKERMLGAISN*CGHPMWMKELT Trigger: AGTTAACTCCTTCATCCACATCGGGTGTCCACATCAATTGCTGATGGCTCCCAACATCCTTTCCTTCACTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| 3UTR CCA 72 bp | GAAGGAAAGGATGTTGGGAGCCATCAGCAATTGATGTaGACACCCGATGTGGATGAAGGAGTTAACTTCCAA | + |
|
Preference number: 3 (lower is better) Translates to: EGKDVGSHQQLM*TPDVDEGVNFQ Trigger: TTGGAAGTTAACTCCTTCATCCACATCGGGTGTCCACATCAATTGCTGATGGCTCCCAACATCCTTTCCTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
||
| 3UTR CCA 72 bp | TTAGAGTTTGGGAAGACCTGGCACAGGCAAAGTGCTTaGCAGGCCTTCTTAACTCTGAAAGAACCAATTGAG | + |
|
Preference number: 3 (lower is better) Translates to: LEFGKTWHRQSA*QAFLTLKEPIE Trigger: CTCAATTGGTTCTTTCAGAGTTAAGAAGGCCTGCCAAGCACTTTGCCTGTGCCAGGTCTTCCCAAACTCTAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
||
| 3UTR TCA 72 bp | TGCTTGGCAGGCCTTCTTAACTCTGAAAGAACCAATTaGGGCCAACTTCTGAGGCATCTGACTCTGTTTGAA | + |
|
Preference number: 3 (lower is better) Translates to: CLAGLLNSERTN*GQLLRHLTLFE Trigger: TTCAAACAGAGTCAGATGCCTCAGAAGTTGGCCTCAATTGGTTCTTTCAGAGTTAAGAAGGCCTGCCAAGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
||
| 3UTR-3UTR CAA 90 bp | CCATCCATCACATTAACAATTAGCTGGAAATACACTGGATCCAGCCATGATACATGGAAATACCTTATCTaGGCCAGGAGCTCCCCAGAT | + |
|
Preference number: 3 (lower is better) Translates to: PSITLTISWKYTGSSHDTWKYLI*ARSSPD Trigger: ATCTGGGGAGCTCCTGGCCAAGATAAGGTATTTCCA...TGTATCATGGCTGGATCCAGTGTATTTCCAGCTAATTGTTAATGTGATGGATGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
||
| 3UTR-3UTR CAA 90 bp | TACTTTTATTACAGACATCTTAAGACCCGTAAACTCTGCTCTGGACCACATCACTGGAAATACCTTATCTaGGCCAGGAGCTCCCCAGAT | + |
|
Preference number: 3 (lower is better) Translates to: YFYYRHLKTRKLCSGPHHWKYLI*ARSSPD Trigger: ATCTGGGGAGCTCCTGGCCAAGATAAGGTATTTCCA...GTGATGTGGTCCAGAGCAGAGTTTACGGGTCTTAAGATGTCTGTAATAAAAGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
||
| 3UTR GCA 72 bp | TACTTTTATTACAGACATCTTAAGACCCGTAAACTCTaGTCTGGACCACATCACTCCAGGATCTCAGAGCTG | + |
|
Preference number: 3 (lower is better) Translates to: YFYYRHLKTRKL*SGPHHSRISEL Trigger: CAGCTCTGAGATCCTGGAGTGATGTGGTCCAGAGCAGAGTTTACGGGTCTTAAGATGTCTGTAATAAAAGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
||
| 3UTR-3UTR CAA 90 bp | GGGACATCAGAACATTGTGCGACATGCAGAAGACTAGTCACGAATCACACAAAACCAACTTTCCCTGTTTaGGGAGGGTTTCTTTTAACT | + |
|
Preference number: 3 (lower is better) Translates to: GTSEHCATCRRLVTNHTKPTFPV*GGFLLT Trigger: AGTTAAAAGAAACCCTCCCAAAACAGGGAAAGTTGG...TTTTGTGTGATTCGTGACTAGTCTTCTGCATGTCGCACAATGTTCTGATGTCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120363.2 |
||
| 3UTR-3UTR CAA 90 bp | TGTGATATTTCAGGGACATCAGAACATTGTGCGACATGCAGAAGACTAGTCACGACCAGTTTTGAGAATTaGTCCACCCTGTTTGATTTA | + |
|
Preference number: 3 (lower is better) Translates to: CDISGTSEHCATCRRLVTTSFEN*STLFDL Trigger: TAAATCAAACAGGGTGGACAAATTCTCAAAACTGGT...CGTGACTAGTCTTCTGCATGTCGCACAATGTTCTGATGTCCCTGAAATATCACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
||
| 3UTR CCA 72 bp | ACATTCATTGTGCCATCCATCACATTAACAATTAGCTaGAAATACACTGGATCCAGCCATGATACAAGACAG | + |
|
Preference number: 3 (lower is better) Translates to: TFIVPSITLTIS*KYTGSSHDTRQ Trigger: CTGTCTTGTATCATGGCTGGATCCAGTGTATTTCCAGCTAATTGTTAATGTGATGGATGGCACAATGAATGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
||
| CDS-3UTR GCA 90 bp | AGACATCTTAAGACCCGTAAACTCTGCTCTGGACCACATCACTCCAGGATCTCAGGGGCGAGCCCACTGTaGCCCCAGCATAACCCTGGT | + |
|
Preference number: 4 (lower is better) Translates to: RHLKTRKLCSGPHHSRISGASPL*PQHNPG Trigger: ACCAGGGTTATGCTGGGGGCACAGTGGGCTCGCCCC...TGAGATCCTGGAGTGATGTGGTCCAGAGCAGAGTTTACGGGTCTTAAGATGTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000964.6 |
||
| CDS-3UTR CCA 90 bp | GACCTGGCACAGGCAAAGTGCTTGGCAGGCCTTCTTAACTCTGAAAGAACCAATTGGTGGTGGTGGTGGTaGGGCGAGCTGATCTGCACC | + |
|
Preference number: 4 (lower is better) Translates to: DLAQAKCLAGLLNSERTNWWWWW*GELICT Trigger: GGTGCAGATCAGCTCGCCCCACCACCACCACCACCA...ATTGGTTCTTTCAGAGTTAAGAAGGCCTGCCAAGCACTTTGCCTGTGCCAGGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
||
| 3UTR CAA 72 bp | CTGCTTGGTGGTGAAATTGGTGCGCACTGCGTTGGGTaGACCCACGTAGCCGTACTCTCCAACTTTCCCTGT | + |
|
Preference number: 4 (lower is better) Translates to: LLGGEIGAHCVG*THVAVLSNFPC Trigger: ACAGGGAAAGTTGGAGAGTACGGCTACGTGGGTCAACCCAACGCAGTGCGCACCAATTTCACCACCAAGCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120363.2 |
||
| CDS-3UTR TCA 90 bp | GACCTGGCACAGGCAAAGTGCTTGGCAGGCCTTCTTAACTCTGAAAGAACCAATGGCCATAAGGCGCACTaGAGTTCTGCGCGCCATAGC | + |
|
Preference number: 4 (lower is better) Translates to: DLAQAKCLAGLLNSERTNGHKAH*SSARHS Trigger: GCTATGGCGCGCAGAACTTCAGTGCGCCTTATGGCC...ATTGGTTCTTTCAGAGTTAAGAAGGCCTGCCAAGCACTTTGCCTGTGCCAGGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
||
| CDS-3UTR TCA 90 bp | AGACATCTTAAGACCCGTAAACTCTGCTCTGGACCACATCACTCCAGGATCTCACCCTGGTGGTGGTGGTaGTGCTGGACCATGGGAGTC | + |
|
Preference number: 4 (lower is better) Translates to: RHLKTRKLCSGPHHSRISPWWWW*CWTMGV Trigger: GACTCCCATGGTCCAGCATCACCACCACCACCAGGG...TGAGATCCTGGAGTGATGTGGTCCAGAGCAGAGTTTACGGGTCTTAAGATGTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000964.6 |
||
| CDS-3UTR GCA 90 bp | ATGCCTCCTTCCTGCAAATGTCTGATGGCAAAGGGAACTAACTGTTCTCCAGCCCCGTTTTCTCATCGCTaGCAGGAGGAGTGGCAGGGG | + |
|
Preference number: 4 (lower is better) Translates to: MPPSCKCLMAKGTNCSPAPFSHR*QEEWQG Trigger: CCCCTGCCACTCCTCCTGGCAGCGATGAGAAAACGG...GGCTGGAGAACAGTTAGTTCCCTTTGCCATCAGACATTTGCAGGAAGGAGGCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000964.6 |
||
| CDS-3UTR CCA 90 bp | GGAAAGGATGTTGGGAGCCATCAGCAATTGATGTGGACACCCGATGTGGATGAACGACAGGCTTCTTGGTaGCTGGCGTGGAGAGGGGAT | + |
|
Preference number: 4 (lower is better) Translates to: GKDVGSHQQLMWTPDVDERQASW*LAWRGD Trigger: ATCCCCTCTCCACGCCAGCCACCAAGAAGCCTGTCG...TTCATCCACATCGGGTGTCCACATCAATTGCTGATGGCTCCCAACATCCTTTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000964.6 |
||
| CDS-3UTR TCA 90 bp | ACTCTGCTCTGGACCACATCACTCCAGGATCTCAGAGCTGTTCATGATTGTACAGGCCATAAGGCGCACTaGAGTTCTGCGCGCCATAGC | + |
|
Preference number: 4 (lower is better) Translates to: TLLWTTSLQDLRAVHDCTGHKAH*SSARHS Trigger: GCTATGGCGCGCAGAACTTCAGTGCGCCTTATGGCC...TGTACAATCATGAACAGCTCTGAGATCCTGGAGTGATGTGGTCCAGAGCAGAGT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
||
| CDS-3UTR TCA 90 bp | ATCTTAAGACCCGTAAACTCTGCTCTGGACCACATCACTCCAGGATCTCAGAGCTGTCCATATGAGTGGTaGATGTACTGGGGCGAGCCC | + |
|
Preference number: 4 (lower is better) Translates to: ILRPVNSALDHITPGSQSCPYEW*MYWGEP Trigger: GGGCTCGCCCCAGTACATTCACCACTCATATGGACA...GCTCTGAGATCCTGGAGTGATGTGGTCCAGAGCAGAGTTTACGGGTCTTAAGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000964.6 |
||
| CDS-3UTR GCA 90 bp | ATGCCTCCTTCCTGCAAATGTCTGATGGCAAAGGGAACTAACTGTTCTCCAGCCTCCCAGAGTCGCCACTaGCAAGGATGGGGTATTCCA | + |
|
Preference number: 4 (lower is better) Translates to: MPPSCKCLMAKGTNCSPASQSRH*QGWGIP Trigger: TGGAATACCCCATCCTTGGCAGTGGCGACTCTGGGA...GGCTGGAGAACAGTTAGTTCCCTTTGCCATCAGACATTTGCAGGAAGGAGGCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
||
| CDS-3UTR GCA 90 bp | GACCTGGCACAGGCAAAGTGCTTGGCAGGCCTTCTTAACTCTGAAAGAACCAATGCCAGGGCCAGAGTCTaGTGCTCTTGTCCATATGAG | + |
|
Preference number: 4 (lower is better) Translates to: DLAQAKCLAGLLNSERTNARARV*CSCPYE Trigger: CTCATATGGACAAGAGCAGCAGACTCTGGCCCTGGC...ATTGGTTCTTTCAGAGTTAAGAAGGCCTGCCAAGCACTTTGCCTGTGCCAGGTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000964.6 |
||
| CDS-3UTR CCA 90 bp | GGGACATCAGAACATTGTGCGACATGCAGAAGACTAGTCACGAATCACACAAAATGGTGGTGGTGGTGGTaGGGCGAGCTGATCTGCACC | + |
|
Preference number: 4 (lower is better) Translates to: GTSEHCATCRRLVTNHTKWWWWW*GELICT Trigger: GGTGCAGATCAGCTCGCCCCACCACCACCACCACCA...TTTTGTGTGATTCGTGACTAGTCTTCTGCATGTCGCACAATGTTCTGATGTCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
||
| CDS-3UTR CCA 90 bp | ACTCTGCTCTGGACCACATCACTCCAGGATCTCAGAGCTGTTCATGATTGTACAAGGCTTCTTGGTGGCTaGCGTGGAGAGGGGATAAGG | + |
|
Preference number: 4 (lower is better) Translates to: TLLWTTSLQDLRAVHDCTRLLGG*RGEGIR Trigger: CCTTATCCCCTCTCCACGCCAGCCACCAAGAAGCCT...TGTACAATCATGAACAGCTCTGAGATCCTGGAGTGATGTGGTCCAGAGCAGAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000964.6 |
||
| CDS-3UTR TCA 90 bp | CTCTTCTTCATGAGTCTTTGGACACTCTCTCTCCTCTATGTCCTACTTAAGGGCTCACCTGGGTCTCATTaGGCTGTAGGGACGCGGCAA | + |
|
Preference number: 4 (lower is better) Translates to: LFFMSLWTLSLLYVLLKGSPGSH*AVGTRQ Trigger: TTGCCGCGTCCCTACAGCTCAATGAGACCCAGGTGA...GCCCTTAAGTAGGACATAGAGGAGAGAGAGTGTCCAAAGACTCATGAAGAAGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000964.6 |
||
| CDS-3UTR TCA 90 bp | ACTCTGCTCTGGACCACATCACTCCAGGATCTCAGAGCTGTTCATGATTGTACAGGTAGTCAGAGTGTCTaGGGTAGACGATGCCGGAGA | + |
|
Preference number: 4 (lower is better) Translates to: TLLWTTSLQDLRAVHDCTGSQSV*GRRCRR Trigger: TCTCCGGCATCGTCTACCTCAGACACTCTGACTACC...TGTACAATCATGAACAGCTCTGAGATCCTGGAGTGATGTGGTCCAGAGCAGAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000964.6 |
||
| CDS-3UTR CCA 90 bp | TGGGAAGACCTGGCACAGGCAAAGTGCTTGGCAGGCCTTCTTAACTCTGAAAGACTGACCGCGCAGGATTaGAAAGTTGTAATCCCATGG | + |
|
Preference number: 4 (lower is better) Translates to: WEDLAQAKCLAGLLNSERLTAQD*KVVIPW Trigger: CCATGGGATTACAACTTTCCAATCCTGCGCGGTCAG...TCTTTCAGAGTTAAGAAGGCCTGCCAAGCACTTTGCCTGTGCCAGGTCTTCCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
||
| CDS-3UTR CCA 90 bp | ATGCCTCCTTCCTGCAAATGTCTGATGGCAAAGGGAACTAACTGTTCTCCAGCCTCTTGGTGGCTGGCGTaGAGAGGGGATAAGGAGTTA | + |
|
Preference number: 4 (lower is better) Translates to: MPPSCKCLMAKGTNCSPASWWLA*RGDKEL Trigger: TAACTCCTTATCCCCTCTCCACGCCAGCCACCAAGA...GGCTGGAGAACAGTTAGTTCCCTTTGCCATCAGACATTTGCAGGAAGGAGGCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000964.6 |
||
| CDS-3UTR CCA 90 bp | GACCTGGCACAGGCAAAGTGCTTGGCAGGCCTTCTTAACTCTGAAAGAACCAATAGGAGTTATTATACGTaGCCAGGGCCAGAGTCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: DLAQAKCLAGLLNSERTNRSYYT*PGPESA Trigger: AGCAGACTCTGGCCCTGGCCACGTATAATAACTCCT...ATTGGTTCTTTCAGAGTTAAGAAGGCCTGCCAAGCACTTTGCCTGTGCCAGGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000964.6 |
||
| CDS-3UTR GCA 90 bp | GGGACATCAGAACATTGTGCGACATGCAGAAGACTAGTCACGAATCACACAAAATCCCAGAGTCGCCACTaGCAAGGATGGGGTATTCCA | + |
|
Preference number: 4 (lower is better) Translates to: GTSEHCATCRRLVTNHTKSQSRH*QGWGIP Trigger: TGGAATACCCCATCCTTGGCAGTGGCGACTCTGGGA...TTTTGTGTGATTCGTGACTAGTCTTCTGCATGTCGCACAATGTTCTGATGTCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
||
| CDS-3UTR GCA 90 bp | AAACTCTGCTCTGGACCACATCACTCCAGGATCTCAGAGCTGTTCATGATTGTAATCCAGTCAAAGGTCTaGGCTGGAGAAGACGTCTCT | + |
|
Preference number: 4 (lower is better) Translates to: KLCSGPHHSRISELFMIVIQSKV*AGEDVS Trigger: AGAGACGTCTTCTCCAGCGCAGACCTTTGACTGGAT...TACAATCATGAACAGCTCTGAGATCCTGGAGTGATGTGGTCCAGAGCAGAGTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000964.6 |
||
| CDS-3UTR GCA 90 bp | TGTGATATTTCAGGGACATCAGAACATTGTGCGACATGCAGAAGACTAGTCACGGAAATTGGTGCGCACTaGGTTGGGTTGACCCACGTA | + |
|
Preference number: 4 (lower is better) Translates to: CDISGTSEHCATCRRLVTEIGAH*VGLTHV Trigger: TACGTGGGTCAACCCAACGCAGTGCGCACCAATTTC...CGTGACTAGTCTTCTGCATGTCGCACAATGTTCTGATGTCCCTGAAATATCACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000964.6 |
||
| CDS-3UTR TCA 90 bp | ATAGATAAAAGGAGAGATGCCTCCTTCCTGCAAATGTCTGATGGCAAAGGGAACCTGCTCTTGTCCATATaGGTGGTGAATGTACTGGGG | + |
|
Preference number: 4 (lower is better) Translates to: IDKRRDASFLQMSDGKGNLLLSI*VVNVLG Trigger: CCCCAGTACATTCACCACTCATATGGACAAGAGCAG...GTTCCCTTTGCCATCAGACATTTGCAGGAAGGAGGCATCTCTCCTTTTATCTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000964.6 |
||
| CDS-3UTR CCA 90 bp | ATAGATAAAAGGAGAGATGCCTCCTTCCTGCAAATGTCTGATGGCAAAGGGAACCTGACCGCGCAGGATTaGAAAGTTGTAATCCCATGG | + |
|
Preference number: 4 (lower is better) Translates to: IDKRRDASFLQMSDGKGNLTAQD*KVVIPW Trigger: CCATGGGATTACAACTTTCCAATCCTGCGCGGTCAG...GTTCCCTTTGCCATCAGACATTTGCAGGAAGGAGGCATCTCTCCTTTTATCTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
||
| CDS-3UTR CCA 90 bp | TACTTTTATTACAGACATCTTAAGACCCGTAAACTCTGCTCTGGACCACATCACGGTGATGCTGGACCATaGGAGTCGAGAGGTTTCCAG | + |
|
Preference number: 4 (lower is better) Translates to: YFYYRHLKTRKLCSGPHHGDAGP*ESRGFQ Trigger: CTGGAAACCTCTCGACTCCCATGGTCCAGCATCACC...GTGATGTGGTCCAGAGCAGAGTTTACGGGTCTTAAGATGTCTGTAATAAAAGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000964.6 |
||
| 3UTR CAA 72 bp | AACAGTGAAGGAAAGGATGTTGGGAGCCATCAGCAATaGATGTGGACACCCGATGTGGATGAAGGAGTTAAC | + |
|
Preference number: 4 (lower is better) Translates to: NSEGKDVGSHQQ*MWTPDVDEGVN Trigger: GTTAACTCCTTCATCCACATCGGGTGTCCACATCAATTGCTGATGGCTCCCAACATCCTTTCCTTCACTGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
||
| 3UTR CAA 72 bp | TTTTTAAATGCAGGGTGGCCAGAGAAGCAGGAAGAATaGGTTAGAGTTTGGGAAGACCTGGCACAGGCAAAG | + |
|
Preference number: 4 (lower is better) Translates to: FLNAGWPEKQEE*VRVWEDLAQAK Trigger: CTTTGCCTGTGCCAGGTCTTCCCAAACTCTAACCAATTCTTCCTGCTTCTCTGGCCACCCTGCATTTAAAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
||
| CDS-3UTR CCA 90 bp | ACTAGTCACGAATCACACAAAATATACATTCATTGTGCCATCCATCACATTAACGAACGACAGGCTTCTTaGTGGCTGGCGTGGAGAGGG | + |
|
Preference number: 4 (lower is better) Translates to: TSHESHKIYIHCAIHHINERQAS*WLAWRG Trigger: CCCTCTCCACGCCAGCCACCAAGAAGCCTGTCGTTC...GTTAATGTGATGGATGGCACAATGAATGTATATTTTGTGTGATTCGTGACTAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000964.6 |
||
| CDS-3UTR GCA 90 bp | GATCTCAGAGCTGTTCATGATTGTACAGTAAATGGAGACTATCATAGGCTCACATTCTCACGCTTCTTCTaGTTCATGCGGCGATTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: DLRAVHDCTVNGDYHRLTFSRFF*FMRRFW Trigger: CCAGAATCGCCGCATGAAGCAGAAGAAGCGTGAGAA...TGTGAGCCTATGATAGTCTCCATTTACTGTACAATCATGAACAGCTCTGAGATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000964.6 |
||
| CDS-3UTR TCA 90 bp | ATAGATAAAAGGAGAGATGCCTCCTTCCTGCAAATGTCTGATGGCAAAGGGAACGCTAGATTTCTCAGATaGTTCTTCCGTTTTCTCATC | + |
|
Preference number: 4 (lower is better) Translates to: IDKRRDASFLQMSDGKGNARFLR*FFRFLI Trigger: GATGAGAAAACGGAAGAATCATCTGAGAAATCTAGC...GTTCCCTTTGCCATCAGACATTTGCAGGAAGGAGGCATCTCTCCTTTTATCTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000964.6 |
||
| CDS CCA 90 bp | CTGTGCCCCCAGCATAACCCTGGTGGTGGTGGTGATGCTGGACCATaGGAGTCGAGAGGTTTCCAGAGTAAACAGCGGGAGCGCACGGGG | + |
|
Preference number: 5 (lower is better) Translates to: LCPQHNPGGGGDAGP*ESRGFQSKQRERTG Trigger: CCCCGTGCGCTCCCGCTGTTTACTCTGGAAACCTCTCGACTCCCATGGTCCAGCATCACCACCACCACCAGGGTTATGCTGGGGGCACAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000964.6 |
||
| CDS GCA 90 bp | GCTCTTGTCCATATGAGTGGTGAATGTACTGGGGCGAGCCCACTGTaGCCCCAGCATAACCCTGGTGGTGGTGGTGATGCTGGACCATGG | + |
|
Preference number: 5 (lower is better) Translates to: ALVHMSGECTGASPL*PQHNPGGGGDAGPW Trigger: CCATGGTCCAGCATCACCACCACCACCAGGGTTATGCTGGGGGCACAGTGGGCTCGCCCCAGTACATTCACCACTCATATGGACAAGAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000964.6 |
||
| CDS-3UTR CAA 90 bp | CCTTATCTTGGCCAGGAGCTCCCCAGATGGGACGAGAAAGGAAGAGAGAGTCTGGGAACGACAGGCTTCTaGGTGGCTGGCGTGGAGAGG | + |
|
Preference number: 5 (lower is better) Translates to: PYLGQELPRWDEKGRESLGTTGF*VAGVER Trigger: CCTCTCCACGCCAGCCACCAAGAAGCCTGTCGTTCC...CAGACTCTCTCTTCCTTTCTCGTCCCATCTGGGGAGCTCCTGGCCAAGATAAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000964.6 |
||
| CDS-3UTR CAA 90 bp | CCTTATCTTGGCCAGGAGCTCCCCAGATGGGACGAGAAAGGAAGAGAGAGTCTGGCGCACTGCGTTGGGTaGACCCACGTAGCCGTACTC | + |
|
Preference number: 5 (lower is better) Translates to: PYLGQELPRWDEKGRESLAHCVG*THVAVL Trigger: GAGTACGGCTACGTGGGTCAACCCAACGCAGTGCGC...CAGACTCTCTCTTCCTTTCTCGTCCCATCTGGGGAGCTCCTGGCCAAGATAAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000964.6 |
||
| CDS CCA 90 bp | GACGTCTCTGAAGCAGGGGAACGACAGGCTTCTTGGTGGCTGGCGTaGAGAGGGGATAAGGAGTTATTATACGTGGCCAGGGCCAGAGTC | + |
|
Preference number: 5 (lower is better) Translates to: DVSEAGERQASWWLA*RGDKELLYVARARV Trigger: GACTCTGGCCCTGGCCACGTATAATAACTCCTTATCCCCTCTCCACGCCAGCCACCAAGAAGCCTGTCGTTCCCCTGCTTCAGAGACGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000964.6 |
||
| CDS GCA 90 bp | GGTCAGAGGGGTAAGCTCGCGCCGAGCAGGTCCCAGAGTCGCCACTaGCAAGGATGGGGTATTCCAGAAAGGAGTTCATTCTTGCATTGT | + |
|
Preference number: 5 (lower is better) Translates to: GQRGKLAPSRSQSRH*QGWGIPERSSFLHC Trigger: ACAATGCAAGAATGAACTCCTTTCTGGAATACCCCATCCTTGGCAGTGGCGACTCTGGGACCTGCTCGGCGCGAGCTTACCCCTCTGACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
||
| CDS CCA 90 bp | GAGAAGACGTCTCTGAAGCAGGGGAACGACAGGCTTCTTGGTGGCTaGCGTGGAGAGGGGATAAGGAGTTATTATACGTGGCCAGGGCCA | + |
|
Preference number: 5 (lower is better) Translates to: EKTSLKQGNDRLLGG*RGEGIRSYYTWPGP Trigger: TGGCCCTGGCCACGTATAATAACTCCTTATCCCCTCTCCACGCCAGCCACCAAGAAGCCTGTCGTTCCCCTGCTTCAGAGACGTCTTCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000964.6 |
||
| CDS CCA 90 bp | GCTGGAGAAGACGTCTCTGAAGCAGGGGAACGACAGGCTTCTTGGTaGCTGGCGTGGAGAGGGGATAAGGAGTTATTATACGTGGCCAGG | + |
|
Preference number: 5 (lower is better) Translates to: AGEDVSEAGERQASW*LAWRGDKELLYVAR Trigger: CCTGGCCACGTATAATAACTCCTTATCCCCTCTCCACGCCAGCCACCAAGAAGCCTGTCGTTCCCCTGCTTCAGAGACGTCTTCTCCAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000964.6 |
||
| CDS CCA 90 bp | TGCGCTGGAGAAGACGTCTCTGAAGCAGGGGAACGACAGGCTTCTTaGTGGCTGGCGTGGAGAGGGGATAAGGAGTTATTATACGTGGCC | + |
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Preference number: 5 (lower is better) Translates to: CAGEDVSEAGERQAS*WLAWRGDKELLYVA Trigger: GGCCACGTATAATAACTCCTTATCCCCTCTCCACGCCAGCCACCAAGAAGCCTGTCGTTCCCCTGCTTCAGAGACGTCTTCTCCAGCGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000964.6 |
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| CDS-3UTR CAA 90 bp | AGACATCTTAAGACCCGTAAACTCTGCTCTGGACCACATCACTCCAGGATCTCATCGCCGCCGCAGCTGTaGGCACTGACCGCGCAGGAT | + |
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Preference number: 5 (lower is better) Translates to: RHLKTRKLCSGPHHSRISSPPQL*ALTAQD Trigger: ATCCTGCGCGGTCAGTGCCAACAGCTGCGGCGGCGA...TGAGATCCTGGAGTGATGTGGTCCAGAGCAGAGTTTACGGGTCTTAAGATGTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| CDS TCA 90 bp | TTTAACTTTCATCCAGTCAAAGGTCTGCGCTGGAGAAGACGTCTCTaGAGCAGGGGAACGACAGGCTTCTTGGTGGCTGGCGTGGAGAGG | + |
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Preference number: 5 (lower is better) Translates to: FNFHPVKGLRWRRRL*SRGTTGFLVAGVER Trigger: CCTCTCCACGCCAGCCACCAAGAAGCCTGTCGTTCCCCTGCTTCAGAGACGTCTTCTCCAGCGCAGACCTTTGACTGGATGAAAGTTAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000964.6 |
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| CDS TCA 90 bp | GTGGGTCTGCTTCCTGATTTAATCCATAGGGGCCATAAGGCGCACTaGAGTTCTGCGCGCCATAGCTTGGACCACAACTCGAGTGGGAAT | + |
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Preference number: 5 (lower is better) Translates to: VGLLPDLIHRGHKAH*SSARHSLDHNSSGN Trigger: ATTCCCACTCGAGTTGTGGTCCAAGCTATGGCGCGCAGAACTTCAGTGCGCCTTATGGCCCCTATGGATTAAATCAGGAAGCAGACCCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120363.2 |
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| CDS CCA 90 bp | CTTCTTGGTGGCTGGCGTGGAGAGGGGATAAGGAGTTATTATACGTaGCCAGGGCCAGAGTCTGCTGCTCTTGTCCATATGAGTGGTGAA | + |
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Preference number: 5 (lower is better) Translates to: LLGGWRGEGIRSYYT*PGPESAALVHMSGE Trigger: TTCACCACTCATATGGACAAGAGCAGCAGACTCTGGCCCTGGCCACGTATAATAACTCCTTATCCCCTCTCCACGCCAGCCACCAAGAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000964.6 |
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| CDS CCA 90 bp | TCCATAGGGGCCATAAGGCGCACTGAAGTTCTGCGCGCCATAGCTTaGACCACAACTCGAGTGGGAATAAGAAATCCCAAGGTTTCCAGA | + |
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Preference number: 5 (lower is better) Translates to: SIGAIRRTEVLRAIA*TTTRVGIRNPKVSR Trigger: TCTGGAAACCTTGGGATTTCTTATTCCCACTCGAGTTGTGGTCCAAGCTATGGCGCGCAGAACTTCAGTGCGCCTTATGGCCCCTATGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| CDS-3UTR CAA 90 bp | GATCTCAGAGCTGTTCATGATTGTACAGTAAATGGAGACTATCATAGGCTCACATCGCCGCCGCAGCTGTaGGCACTGACCGCGCAGGAT | + |
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Preference number: 5 (lower is better) Translates to: DLRAVHDCTVNGDYHRLTSPPQL*ALTAQD Trigger: ATCCTGCGCGGTCAGTGCCAACAGCTGCGGCGGCGA...TGTGAGCCTATGATAGTCTCCATTTACTGTACAATCATGAACAGCTCTGAGATC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| CDS-3UTR CAA 90 bp | AAACTCTGCTCTGGACCACATCACTCCAGGATCTCAGAGCTGTTCATGATTGTATCTGCGCGCCATAGCTaGGACCACAACTCGAGTGGG | + |
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Preference number: 5 (lower is better) Translates to: KLCSGPHHSRISELFMIVSARHS*DHNSSG Trigger: CCCACTCGAGTTGTGGTCCAAGCTATGGCGCGCAGA...TACAATCATGAACAGCTCTGAGATCCTGGAGTGATGTGGTCCAGAGCAGAGTTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| CDS-3UTR CAA 90 bp | ATGCCTCCTTCCTGCAAATGTCTGATGGCAAAGGGAACTAACTGTTCTCCAGCCTGCTTGGTGGTGAAATaGGTGCGCACTGCGTTGGGT | + |
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Preference number: 5 (lower is better) Translates to: MPPSCKCLMAKGTNCSPACLVVK*VRTALG Trigger: ACCCAACGCAGTGCGCACCAATTTCACCACCAAGCA...GGCTGGAGAACAGTTAGTTCCCTTTGCCATCAGACATTTGCAGGAAGGAGGCAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000964.6 |
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| CDS-3UTR CAA 90 bp | ATCTTAAGACCCGTAAACTCTGCTCTGGACCACATCACTCCAGGATCTCAGAGCGGAACGACAGGCTTCTaGGTGGGTCTGCTTCCTGAT | + |
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Preference number: 5 (lower is better) Translates to: ILRPVNSALDHITPGSQSGTTGF*VGLLPD Trigger: ATCAGGAAGCAGACCCACCAAGAAGCCTGTCGTTCC...GCTCTGAGATCCTGGAGTGATGTGGTCCAGAGCAGAGTTTACGGGTCTTAAGAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120363.2 |
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| CDS TCA 90 bp | TTACGTCTGCTTCCTGATTTAATCCATAGGGGCCATAAGGCGCACTaGAGTTCTGCGCGCCATAGCTTGGACCACAACTCGAGTGGGAAT | + |
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Preference number: 5 (lower is better) Translates to: LRLLPDLIHRGHKAH*SSARHSLDHNSSGN Trigger: ATTCCCACTCGAGTTGTGGTCCAAGCTATGGCGCGCAGAACTTCAGTGCGCCTTATGGCCCCTATGGATTAAATCAGGAAGCAGACGTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000964.6 |
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| CDS-3UTR CAA 90 bp | GGAAAGGATGTTGGGAGCCATCAGCAATTGATGTGGACACCCGATGTGGATGAAACTGACCGCGCAGGATaGGAAAGTTGTAATCCCATG | + |
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Preference number: 5 (lower is better) Translates to: GKDVGSHQQLMWTPDVDETDRAG*ESCNPM Trigger: CATGGGATTACAACTTTCCAATCCTGCGCGGTCAGT...TTCATCCACATCGGGTGTCCACATCAATTGCTGATGGCTCCCAACATCCTTTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| CDS-3UTR CAA 90 bp | GACCTGGCACAGGCAAAGTGCTTGGCAGGCCTTCTTAACTCTGAAAGAACCAATACTGACCGCGCAGGATaGGAAAGTTGTAATCCCATG | + |
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Preference number: 5 (lower is better) Translates to: DLAQAKCLAGLLNSERTNTDRAG*ESCNPM Trigger: CATGGGATTACAACTTTCCAATCCTGCGCGGTCAGT...ATTGGTTCTTTCAGAGTTAAGAAGGCCTGCCAAGCACTTTGCCTGTGCCAGGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| CDS-3UTR CAA 90 bp | ATCTTAAGACCCGTAAACTCTGCTCTGGACCACATCACTCCAGGATCTCAGAGCCCAACTTTCCCTGTTTaGGGAGGGTTTCTTTTAACT | + |
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Preference number: 5 (lower is better) Translates to: ILRPVNSALDHITPGSQSPTFPV*GGFLLT Trigger: AGTTAAAAGAAACCCTCCCAAAACAGGGAAAGTTGG...GCTCTGAGATCCTGGAGTGATGTGGTCCAGAGCAGAGTTTACGGGTCTTAAGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000964.6 |
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| CDS-3UTR CAA 90 bp | TCACACATGAACTGTACCAGTTTTGAGAATTTGTCCACCCTGTTTGATTTAGTGAGCTCTGTGAGCTGCTaGGTGGTGAAATTGGTGCGC | + |
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Preference number: 5 (lower is better) Translates to: SHMNCTSFENLSTLFDLVSSVSC*VVKLVR Trigger: GCGCACCAATTTCACCACCAAGCAGCTCACAGAGCT...CACTAAATCAAACAGGGTGGACAAATTCTCAAAACTGGTACAGTTCATGTGTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000964.6 |
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| CDS CAA 90 bp | GAAGCGGTCGTCGCCGCCGCAGCTGTTGGCACTGACCGCGCAGGATaGGAAAGTTGTAATCCCATGGTCAGAGGGGTAAGCTCGCGCCGA | + |
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Preference number: 6 (lower is better) Translates to: EAVVAAAAVGTDRAG*ESCNPMVRGVSSRR Trigger: TCGGCGCGAGCTTACCCCTCTGACCATGGGATTACAACTTTCCAATCCTGCGCGGTCAGTGCCAACAGCTGCGGCGGCGACGACCGCTTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| CDS TCA 72 bp | CGTGGCCAGGGCCAGAGTCTGCTGCTCTTGTCCATATaGGTGGTGAATGTACTGGGGCGAGCCCACTGTGCC | + |
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Preference number: 6 (lower is better) Translates to: RGQGQSLLLLSI*VVNVLGRAHCA Trigger: GGCACAGTGGGCTCGCCCCAGTACATTCACCACTCATATGGACAAGAGCAGCAGACTCTGGCCCTGGCCACG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000964.6 |
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| CDS CAA 72 bp | GTCGCCGCCGCAGCTGTTGGCACTGACCGCGCAGGATaGGAAAGTTGTAATCCCATGGTCAGAGGGGTAAGC | + |
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Preference number: 6 (lower is better) Translates to: VAAAAVGTDRAG*ESCNPMVRGVS Trigger: GCTTACCCCTCTGACCATGGGATTACAACTTTCCAATCCTGCGCGGTCAGTGCCAACAGCTGCGGCGGCGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| CDS GCA 72 bp | GGTAAGCTCGCGCCGAGCAGGTCCCAGAGTCGCCACTaGCAAGGATGGGGTATTCCAGAAAGGAGTTCATTC | + |
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Preference number: 6 (lower is better) Translates to: GKLAPSRSQSRH*QGWGIPERSSF Trigger: GAATGAACTCCTTTCTGGAATACCCCATCCTTGGCAGTGGCGACTCTGGGACCTGCTCGGCGCGAGCTTACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| CDS GCA 72 bp | CATATGAGTGGTGAATGTACTGGGGCGAGCCCACTGTaGCCCCAGCATAACCCTGGTGGTGGTGGTGATGCT | + |
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Preference number: 6 (lower is better) Translates to: HMSGECTGASPL*PQHNPGGGGDA Trigger: AGCATCACCACCACCACCAGGGTTATGCTGGGGGCACAGTGGGCTCGCCCCAGTACATTCACCACTCATATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000964.6 |
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| CDS CCA 72 bp | CAGCATAACCCTGGTGGTGGTGGTGATGCTGGACCATaGGAGTCGAGAGGTTTCCAGAGTAAACAGCGGGAG | + |
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Preference number: 6 (lower is better) Translates to: QHNPGGGGDAGP*ESRGFQSKQRE Trigger: CTCCCGCTGTTTACTCTGGAAACCTCTCGACTCCCATGGTCCAGCATCACCACCACCACCAGGGTTATGCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000964.6 |
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| CDS CCA 72 bp | GCGCCGAGCAGGTCCCAGAGTCGCCACTGCCAAGGATaGGGTATTCCAGAAAGGAGTTCATTCTTGCATTGT | + |
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Preference number: 6 (lower is better) Translates to: APSRSQSRHCQG*GIPERSSFLHC Trigger: ACAATGCAAGAATGAACTCCTTTCTGGAATACCCCATCCTTGGCAGTGGCGACTCTGGGACCTGCTCGGCGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| CDS CCA 72 bp | GGCTGGCGTGGAGAGGGGATAAGGAGTTATTATACGTaGCCAGGGCCAGAGTCTGCTGCTCTTGTCCATATG | + |
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Preference number: 6 (lower is better) Translates to: GWRGEGIRSYYT*PGPESAALVHM Trigger: CATATGGACAAGAGCAGCAGACTCTGGCCCTGGCCACGTATAATAACTCCTTATCCCCTCTCCACGCCAGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000964.6 |
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| CDS CCA 72 bp | TCTCTGAAGCAGGGGAACGACAGGCTTCTTGGTGGCTaGCGTGGAGAGGGGATAAGGAGTTATTATACGTGG | + |
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Preference number: 6 (lower is better) Translates to: SLKQGNDRLLGG*RGEGIRSYYTW Trigger: CCACGTATAATAACTCCTTATCCCCTCTCCACGCCAGCCACCAAGAAGCCTGTCGTTCCCCTGCTTCAGAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000964.6 |
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| CDS TCA 72 bp | CTTCCTGATTTAATCCATAGGGGCCATAAGGCGCACTaGAGTTCTGCGCGCCATAGCTTGGACCACAACTCG | + |
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Preference number: 6 (lower is better) Translates to: LPDLIHRGHKAH*SSARHSLDHNS Trigger: CGAGTTGTGGTCCAAGCTATGGCGCGCAGAACTTCAGTGCGCCTTATGGCCCCTATGGATTAAATCAGGAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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| CDS CCA 72 bp | GCCATAAGGCGCACTGAAGTTCTGCGCGCCATAGCTTaGACCACAACTCGAGTGGGAATAAGAAATCCCAAG | + |
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Preference number: 6 (lower is better) Translates to: AIRRTEVLRAIA*TTTRVGIRNPK Trigger: CTTGGGATTTCTTATTCCCACTCGAGTTGTGGTCCAAGCTATGGCGCGCAGAACTTCAGTGCGCCTTATGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000964.6 ENSMUST00000120363.2 |
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