Pregenerated sensors for HORMAD2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020419Ensembl transcript IDs: ENSMUST00000020689.10, ENSMUST00000109948.8, ENSMUST00000109949.8, ENSMUST00000130174.2
Found 83 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCCTCTCTAACTCGGCCGCGAGGTCATCCCATCCCAAGGCAGCTCTaGGATCCAGGTTCCTTCTGGAGAAGTGAACCTAGGGCCTGCTCA | + |
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Preference number: 1 (lower is better) Translates to: SSLTRPRGHPIPRQL*DPGSFWRSEPRACS Trigger: TGAGCAGGCCCTAGGTTCACTTCTCCAGAAGGAACCTGGATCGCAGAGCTGCCTTGGGATGGGATGACCTCGCGGCCGAGTTAGAGAGGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020689.10 ENSMUST00000109948.8 |
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| 3UTR GCA 90 bp | GAAAATACACAACATAGGTCTTACAGGGGAACCAGGCTCCTGAACTaGATGTCAGCTGTTTGGGATTGGCCAACAGCACAGGGCCTGGGG | + |
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Preference number: 1 (lower is better) Translates to: ENTQHRSYRGTRLLN*MSAVWDWPTAQGLG Trigger: CCCCAGGCCCTGTGCTGTTGGCCAATCCCAAACAGCTGACATGCAGTTCAGGAGCCTGGTTCCCCTGTAAGACCTATGTTGTGTATTTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020689.10 ENSMUST00000109948.8 |
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| 3UTR CCA 90 bp | GGGCCTGGGGCAGAGCTGAGGAACTGCACAGGGAGGGAGGGCATCTaGATTCACATGCTGCTGATCAACTTTGTGACTGAAATCAACATA | + |
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Preference number: 1 (lower is better) Translates to: GPGAELRNCTGREGI*IHMLLINFVTEINI Trigger: TATGTTGATTTCAGTCACAAAGTTGATCAGCAGCATGTGAATCCAGATGCCCTCCCTCCCTGTGCAGTTCCTCAGCTCTGCCCCAGGCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020689.10 ENSMUST00000109948.8 |
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| 3UTR TCA 90 bp | ACCCATTCGAAGGCTCACAGGCTCCCCCTCAAACAGCAGGAAGTGTaGATTCACCGCTTCTTTAAAGCCAGGGGGTTGGTAATCATGTGG | + |
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Preference number: 1 (lower is better) Translates to: THSKAHRLPLKQQEV*IHRFFKARGLVIMW Trigger: CCACATGATTACCAACCCCCTGGCTTTAAAGAAGCGGTGAATTCACACTTCCTGCTGTTTGAGGGGGAGCCTGTGAGCCTTCGAATGGGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000020689.10 |
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| 3UTR TCA 90 bp | TCGAGCATTCTGGTGGCCTCCGTTGTGACTTTTACTTTCATGCTGTaGAAGCCAGAGGAGACTGAACCCATTCGAAGGCTCACAGGCTCC | + |
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Preference number: 1 (lower is better) Translates to: SSILVASVVTFTFML*KPEETEPIRRLTGS Trigger: GGAGCCTGTGAGCCTTCGAATGGGTTCAGTCTCCTCTGGCTTTCACAGCATGAAAGTAAAAGTCACAACGGAGGCCACCAGAATGCTCGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020689.10 |
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| 3UTR TCA 90 bp | CTCCGTTGTGACTTTTACTTTCATGCTGTGAAAGCCAGAGGAGACTaGACCCATTCGAAGGCTCACAGGCTCCCCCTCAAACAGCAGGAA | + |
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Preference number: 1 (lower is better) Translates to: LRCDFYFHAVKARGD*THSKAHRLPLKQQE Trigger: TTCCTGCTGTTTGAGGGGGAGCCTGTGAGCCTTCGAATGGGTTCAGTCTCCTCTGGCTTTCACAGCATGAAAGTAAAAGTCACAACGGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020689.10 |
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| 3UTR TCA 90 bp | ACATCATTCGGAAGGGGTCCAAGATTCTGCATCAGTATATACAATTaGCGGATTAGTAGGGAACAGGCTTTCTTAATATCTTCACTGTCT | + |
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Preference number: 1 (lower is better) Translates to: TSFGRGPRFCISIYN*RISREQAFLISSLS Trigger: AGACAGTGAAGATATTAAGAAAGCCTGTTCCCTACTAATCCGTCAATTGTATATACTGATGCAGAATCTTGGACCCCTTCCGAATGATGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020689.10 |
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| 3UTR-3UTR TCA 90 bp | GCCGCGAGGTCATCCCATCCCAAGGCAGCTCTGCGATCCAGGTTCCTTCTGGAGCTGTCACTGGTTCGCTaGCCTTCTTCTTCTTTCTGG | + |
|
Preference number: 2 (lower is better) Translates to: AARSSHPKAALRSRFLLELSLVR*PSSSFW Trigger: CCAGAAAGAAGAAGAAGGTCAGCGAACCAGTGACAG...CTCCAGAAGGAACCTGGATCGCAGAGCTGCCTTGGGATGGGATGACCTCGCGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020689.10 |
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| 3UTR-3UTR CCA 90 bp | GCGTGTCTCCTCTCTAACTCGGCCGCGAGGTCATCCCATCCCAAGGCAGCTCTGGGAAGAAAGAAGGCTTaGTCATTATCCTGTTACAGC | + |
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Preference number: 2 (lower is better) Translates to: ACLLSNSAARSSHPKAALGRKKA*SLSCYS Trigger: GCTGTAACAGGATAATGACCAAGCCTTCTTTCTTCC...CAGAGCTGCCTTGGGATGGGATGACCTCGCGGCCGAGTTAGAGAGGAGACACGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020689.10 ENSMUST00000109948.8 |
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| 3UTR-3UTR TCA 90 bp | GCCGCGAGGTCATCCCATCCCAAGGCAGCTCTGCGATCCAGGTTCCTTCTGGAGAAACAGCAGGAAGTGTaGATTCACCGCTTCTTTAAA | + |
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Preference number: 2 (lower is better) Translates to: AARSSHPKAALRSRFLLEKQQEV*IHRFFK Trigger: TTTAAAGAAGCGGTGAATTCACACTTCCTGCTGTTT...CTCCAGAAGGAACCTGGATCGCAGAGCTGCCTTGGGATGGGATGACCTCGCGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020689.10 |
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| 3UTR-3UTR GCA 90 bp | GGGAGGGAGGGCATCTGGATTCACATGCTGCTGATCAACTTTGTGACTGAAATCATCCCAAGGCAGCTCTaGGATCCAGGTTCCTTCTGG | + |
|
Preference number: 2 (lower is better) Translates to: GREGIWIHMLLINFVTEIIPRQL*DPGSFW Trigger: CCAGAAGGAACCTGGATCGCAGAGCTGCCTTGGGAT...GATTTCAGTCACAAAGTTGATCAGCAGCATGTGAATCCAGATGCCCTCCCTCCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020689.10 ENSMUST00000109948.8 |
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| 3UTR-3UTR TCA 90 bp | TTACAGGGGAACCAGGCTCCTGAACTGCATGTCAGCTGTTTGGGATTGGCCAACGGAGAATTTTTAAACTaGGGTTGGGATCTCTCCTCA | + |
|
Preference number: 2 (lower is better) Translates to: LQGNQAPELHVSCLGLANGEFLN*GWDLSS Trigger: TGAGGAGAGATCCCAACCTCAGTTTAAAAATTCTCC...GTTGGCCAATCCCAAACAGCTGACATGCAGTTCAGGAGCCTGGTTCCCCTGTAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020689.10 |
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| 3UTR-3UTR GCA 90 bp | ACAGGGAGGGAGGGCATCTGGATTCACATGCTGCTGATCAACTTTGTGACTGAACACTTTCAAAGCTTGTaGTGCTGCTGTCAAAGTCCA | + |
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Preference number: 2 (lower is better) Translates to: TGREGIWIHMLLINFVTEHFQSL*CCCQSP Trigger: TGGACTTTGACAGCAGCAGCACAAGCTTTGAAAGTG...TTCAGTCACAAAGTTGATCAGCAGCATGTGAATCCAGATGCCCTCCCTCCCTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020689.10 |
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| 3UTR-3UTR TCA 90 bp | CATATAAATCATGCCTGGCTAAGCACCTCCACACATATCCTATGCTGCGCTGTGTTTACTTTCATGCTGTaGAAGCCAGAGGAGACTGAA | + |
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Preference number: 2 (lower is better) Translates to: HINHAWLSTSTHILCCAVFTFML*KPEETE Trigger: TTCAGTCTCCTCTGGCTTTCACAGCATGAAAGTAAA...CACAGCGCAGCATAGGATATGTGTGGAGGTGCTTAGCCAGGCATGATTTATATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020689.10 |
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| 3UTR CAA 90 bp | CAGACTGAGGAGAGAGTGGAGCAAAGCCGTAGGAAGAAAGAAGGCTaGGTCATTATCCTGTTACAGCACTTCATAGATTTTTGCAAAACA | + |
|
Preference number: 2 (lower is better) Translates to: QTEERVEQSRRKKEG*VIILLQHFIDFCKT Trigger: TGTTTTGCAAAAATCTATGAAGTGCTGTAACAGGATAATGACCAAGCCTTCTTTCTTCCTACGGCTTTGCTCCACTCTCTCCTCAGTCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000020689.10 ENSMUST00000109948.8 ENSMUST00000109949.8 |
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| 3UTR CAA 90 bp | CAAATAGCATCACCTGCAAGTTACAGACAGATAAACTCAAGTATTTaGGAGAAAATACACAACATAGGTCTTACAGGGGAACCAGGCTCC | + |
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Preference number: 2 (lower is better) Translates to: QIASPASYRQINSSI*EKIHNIGLTGEPGS Trigger: GGAGCCTGGTTCCCCTGTAAGACCTATGTTGTGTATTTTCTCCAAAATACTTGAGTTTATCTGTCTGTAACTTGCAGGTGATGCTATTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020689.10 ENSMUST00000109948.8 |
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| 3UTR-3UTR CAA 90 bp | GCGTGTCTCCTCTCTAACTCGGCCGCGAGGTCATCCCATCCCAAGGCAGCTCTGTTTAAAGCCAGGGGGTaGGTAATCATGTGGGGTCAC | + |
|
Preference number: 3 (lower is better) Translates to: ACLLSNSAARSSHPKAALFKARG*VIMWGH Trigger: GTGACCCCACATGATTACCAACCCCCTGGCTTTAAA...CAGAGCTGCCTTGGGATGGGATGACCTCGCGGCCGAGTTAGAGAGGAGACACGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020689.10 |
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| 3UTR TCA 72 bp | AAGGCTCACAGGCTCCCCCTCAAACAGCAGGAAGTGTaGATTCACCGCTTCTTTAAAGCCAGGGGGTTGGTA | + |
|
Preference number: 3 (lower is better) Translates to: KAHRLPLKQQEV*IHRFFKARGLV Trigger: TACCAACCCCCTGGCTTTAAAGAAGCGGTGAATTCACACTTCCTGCTGTTTGAGGGGGAGCCTGTGAGCCTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000020689.10 |
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| 3UTR CCA 72 bp | GCAGAGCTGAGGAACTGCACAGGGAGGGAGGGCATCTaGATTCACATGCTGCTGATCAACTTTGTGACTGAA | + |
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Preference number: 3 (lower is better) Translates to: AELRNCTGREGI*IHMLLINFVTE Trigger: TTCAGTCACAAAGTTGATCAGCAGCATGTGAATCCAGATGCCCTCCCTCCCTGTGCAGTTCCTCAGCTCTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020689.10 ENSMUST00000109948.8 |
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| 3UTR TCA 72 bp | CTGGTGGCCTCCGTTGTGACTTTTACTTTCATGCTGTaGAAGCCAGAGGAGACTGAACCCATTCGAAGGCTC | + |
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Preference number: 3 (lower is better) Translates to: LVASVVTFTFML*KPEETEPIRRL Trigger: GAGCCTTCGAATGGGTTCAGTCTCCTCTGGCTTTCACAGCATGAAAGTAAAAGTCACAACGGAGGCCACCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020689.10 |
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| 3UTR GCA 72 bp | GCTCAATGTGCACAAAATTCATTCTTTGGACTTGACTaGCGCAGGCCTCCTCTTCCTCGTCACAGTCTAGCC | + |
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Preference number: 3 (lower is better) Translates to: AQCAQNSFFGLD*RRPPLPRHSLA Trigger: GGCTAGACTGTGACGAGGAAGAGGAGGCCTGCGGCAGTCAAGTCCAAAGAATGAATTTTGTGCACATTGAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020689.10 |
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| 3UTR TCA 72 bp | GACTTTTACTTTCATGCTGTGAAAGCCAGAGGAGACTaGACCCATTCGAAGGCTCACAGGCTCCCCCTCAAA | + |
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Preference number: 3 (lower is better) Translates to: DFYFHAVKARGD*THSKAHRLPLK Trigger: TTTGAGGGGGAGCCTGTGAGCCTTCGAATGGGTTCAGTCTCCTCTGGCTTTCACAGCATGAAAGTAAAAGTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020689.10 |
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| 3UTR TCA 72 bp | CTTGGCTCAATGTGCACAAAATTCATTCTTTGGACTTaGCTGCCGCAGGCCTCCTCTTCCTCGTCACAGTCT | + |
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Preference number: 3 (lower is better) Translates to: LGSMCTKFILWT*LPQASSSSSQS Trigger: AGACTGTGACGAGGAAGAGGAGGCCTGCGGCAGTCAAGTCCAAAGAATGAATTTTGTGCACATTGAGCCAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020689.10 |
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| 3UTR CCA 72 bp | CTCAATAGCTTAGCCTTTCACAGACTGAGGAGAGAGTaGAGCAAAGCCGTAGGAAGAAAGAAGGCTTGGTCA | + |
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Preference number: 3 (lower is better) Translates to: LNSLAFHRLRRE*SKAVGRKKAWS Trigger: TGACCAAGCCTTCTTTCTTCCTACGGCTTTGCTCCACTCTCTCCTCAGTCTGTGAAAGGCTAAGCTATTGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020689.10 ENSMUST00000109948.8 ENSMUST00000109949.8 |
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| 3UTR TCA 72 bp | CCGGACACTTTTTGTCTTCCCGGAGAATTTTTAAACTaGGGTTGGGATCTCTCCTCATTATATGGGTCCCAG | + |
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Preference number: 3 (lower is better) Translates to: PDTFCLPGEFLN*GWDLSSLYGSQ Trigger: CTGGGACCCATATAATGAGGAGAGATCCCAACCTCAGTTTAAAAATTCTCCGGGAAGACAAAAAGTGTCCGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000020689.10 |
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| 3UTR-3UTR CAA 90 bp | ACAGGGAGGGAGGGCATCTGGATTCACATGCTGCTGATCAACTTTGTGACTGAAGCACTTCATAGATTTTaGCAAAACAGGTGTAGCAAA | + |
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Preference number: 3 (lower is better) Translates to: TGREGIWIHMLLINFVTEALHRF*QNRCSK Trigger: TTTGCTACACCTGTTTTGCAAAAATCTATGAAGTGC...TTCAGTCACAAAGTTGATCAGCAGCATGTGAATCCAGATGCCCTCCCTCCCTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020689.10 ENSMUST00000109948.8 |
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| 3UTR-3UTR CAA 90 bp | AATGAAGACTGTCACTGGTTCGCTGACCTTCTTCTTCTTTCTGGAACTTTCAAATCCCACTTTCAAAGCTaGTGCTGCTGCTGTCAAAGT | + |
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Preference number: 3 (lower is better) Translates to: NEDCHWFADLLLLSGTFKSHFQS*CCCCQS Trigger: ACTTTGACAGCAGCAGCACAAGCTTTGAAAGTGGGA...TTTGAAAGTTCCAGAAAGAAGAAGAAGGTCAGCGAACCAGTGACAGTCTTCATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020689.10 |
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| 3UTR TCA 72 bp | GGAAGGGGTCCAAGATTCTGCATCAGTATATACAATTaGCGGATTAGTAGGGAACAGGCTTTCTTAATATCT | + |
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Preference number: 3 (lower is better) Translates to: GRGPRFCISIYN*RISREQAFLIS Trigger: AGATATTAAGAAAGCCTGTTCCCTACTAATCCGTCAATTGTATATACTGATGCAGAATCTTGGACCCCTTCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020689.10 |
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| 3UTR GCA 72 bp | TTGGTCATTATCCTGTTACAGCACTTCATAGATTTTTaGAAAACAGGTGTAGCAAAGGCACCTAAGTTTCAT | + |
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Preference number: 3 (lower is better) Translates to: LVIILLQHFIDF*KTGVAKAPKFH Trigger: ATGAAACTTAGGTGCCTTTGCTACACCTGTTTTGCAAAAATCTATGAAGTGCTGTAACAGGATAATGACCAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020689.10 |
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| CDS-3UTR TCA 90 bp | GCGTGTCTCCTCTCTAACTCGGCCGCGAGGTCATCCCATCCCAAGGCAGCTCTGCTTCACCACCACCAGTaGCTCATGCTCATTTGTCAC | + |
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Preference number: 4 (lower is better) Translates to: ACLLSNSAARSSHPKAALLHHHQ*LMLICH Trigger: GTGACAAATGAGCATGAGTCACTGGTGGTGGTGAAG...CAGAGCTGCCTTGGGATGGGATGACCTCGCGGCCGAGTTAGAGAGGAGACACGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020689.10 ENSMUST00000109948.8 |
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| CDS-3UTR TCA 90 bp | GCGTGTCTCCTCTCTAACTCGGCCGCGAGGTCATCCCATCCCAAGGCAGCTCTGATCATGTGGGGTCACTaGGTTATAATAATGGAGTTT | + |
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Preference number: 4 (lower is better) Translates to: ACLLSNSAARSSHPKAALIMWGH*VIIMEF Trigger: AAACTCCATTATTATAACTCAGTGACCCCACATGAT...CAGAGCTGCCTTGGGATGGGATGACCTCGCGGCCGAGTTAGAGAGGAGACACGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109948.8 |
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| CDS-3UTR GCA 90 bp | GTCTTACAGGGGAACCAGGCTCCTGAACTGCATGTCAGCTGTTTGGGATTGGCCACCACCAGTGACTCATaGTCATTTGTCACTTGGGAC | + |
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Preference number: 4 (lower is better) Translates to: VLQGNQAPELHVSCLGLATTSDS*SFVTWD Trigger: GTCCCAAGTGACAAATGAGCATGAGTCACTGGTGGT...GGCCAATCCCAAACAGCTGACATGCAGTTCAGGAGCCTGGTTCCCCTGTAAGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020689.10 ENSMUST00000109948.8 |
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| CDS-3UTR TCA 90 bp | CAGACTGAGGAGAGAGTGGAGCAAAGCCGTAGGAAGAAAGAAGGCTTGGTCATTCTTCACCACCACCAGTaGCTCATGCTCATTTGTCAC | + |
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Preference number: 4 (lower is better) Translates to: QTEERVEQSRRKKEGLVILHHHQ*LMLICH Trigger: GTGACAAATGAGCATGAGTCACTGGTGGTGGTGAAG...AATGACCAAGCCTTCTTTCTTCCTACGGCTTTGCTCCACTCTCTCCTCAGTCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020689.10 ENSMUST00000109948.8 ENSMUST00000109949.8 |
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| CDS-3UTR TCA 90 bp | TCACAGACTGAGGAGAGAGTGGAGCAAAGCCGTAGGAAGAAAGAAGGCTTGGTCTGGTGGCCTCCGTTGTaGCTTTTACTTTCATGCTGT | + |
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Preference number: 4 (lower is better) Translates to: SQTEERVEQSRRKKEGLVWWPPL*LLLSCC Trigger: ACAGCATGAAAGTAAAAGTCACAACGGAGGCCACCA...GACCAAGCCTTCTTTCTTCCTACGGCTTTGCTCCACTCTCTCCTCAGTCTGTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109948.8 ENSMUST00000109949.8 |
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| CDS-3UTR TCA 90 bp | TTAGCCTTTCACAGACTGAGGAGAGAGTGGAGCAAAGCCGTAGGAAGAAAGAAGTTCATTCTTTGGACTTaGCTGCCGCAGGCCTCCTCT | + |
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Preference number: 4 (lower is better) Translates to: LAFHRLRREWSKAVGRKKFILWT*LPQASS Trigger: AGAGGAGGCCTGCGGCAGTCAAGTCCAAAGAATGAA...CTTCTTTCTTCCTACGGCTTTGCTCCACTCTCTCCTCAGTCTGTGAAAGGCTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109948.8 ENSMUST00000109949.8 |
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| CDS-3UTR CCA 90 bp | CTTAGCCTTTCACAGACTGAGGAGAGAGTGGAGCAAAGCCGTAGGAAGAAAGAAACGCCTTCAGTGTTCTaGTGTTGTGAGAGAGCTGCG | + |
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Preference number: 4 (lower is better) Translates to: LSLSQTEERVEQSRRKKETPSVF*CCERAA Trigger: CGCAGCTCTCTCACAACACCAGAACACTGAAGGCGT...TTCTTTCTTCCTACGGCTTTGCTCCACTCTCTCCTCAGTCTGTGAAAGGCTAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020689.10 ENSMUST00000109948.8 ENSMUST00000109949.8 |
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| 3UTR CAA 72 bp | ACTTGGCTCAATGTGCACAAAATTCATTCTTTGGACTaGACTGCCGCAGGCCTCCTCTTCCTCGTCACAGTC | + |
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Preference number: 4 (lower is better) Translates to: TWLNVHKIHSLD*TAAGLLFLVTV Trigger: GACTGTGACGAGGAAGAGGAGGCCTGCGGCAGTCAAGTCCAAAGAATGAATTTTGTGCACATTGAGCCAAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020689.10 |
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| CDS-3UTR TCA 90 bp | AATACACAACATAGGTCTTACAGGGGAACCAGGCTCCTGAACTGCATGTCAGCTCTGTCACTGGTTCGCTaGCCTTCTTCTTCTTTCTGG | + |
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Preference number: 4 (lower is better) Translates to: NTQHRSYRGTRLLNCMSALSLVR*PSSSFW Trigger: CCAGAAAGAAGAAGAAGGTCAGCGAACCAGTGACAG...AGCTGACATGCAGTTCAGGAGCCTGGTTCCCCTGTAAGACCTATGTTGTGTATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109948.8 |
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| CDS-3UTR GCA 90 bp | ACAGGGAGGGAGGGCATCTGGATTCACATGCTGCTGATCAACTTTGTGACTGAAACCACCAGTGACTCATaGTCATTTGTCACTTGGGAC | + |
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Preference number: 4 (lower is better) Translates to: TGREGIWIHMLLINFVTETTSDS*SFVTWD Trigger: GTCCCAAGTGACAAATGAGCATGAGTCACTGGTGGT...TTCAGTCACAAAGTTGATCAGCAGCATGTGAATCCAGATGCCCTCCCTCCCTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020689.10 ENSMUST00000109948.8 |
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| CDS-3UTR TCA 90 bp | AATACACAACATAGGTCTTACAGGGGAACCAGGCTCCTGAACTGCATGTCAGCTTGGTGGCCTCCGTTGTaGCTTTTACTTTCATGCTGT | + |
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Preference number: 4 (lower is better) Translates to: NTQHRSYRGTRLLNCMSAWWPPL*LLLSCC Trigger: ACAGCATGAAAGTAAAAGTCACAACGGAGGCCACCA...AGCTGACATGCAGTTCAGGAGCCTGGTTCCCCTGTAAGACCTATGTTGTGTATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109948.8 |
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| CDS-3UTR TCA 90 bp | AGCAAAGCCGTAGGAAGAAAGAAGGCTTGGTCATTATCCTGTTACAGCACTTCATTCATTCTTTGGACTTaGCTGCCGCAGGCCTCCTCT | + |
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Preference number: 4 (lower is better) Translates to: SKAVGRKKAWSLSCYSTSFILWT*LPQASS Trigger: AGAGGAGGCCTGCGGCAGTCAAGTCCAAAGAATGAA...TGAAGTGCTGTAACAGGATAATGACCAAGCCTTCTTTCTTCCTACGGCTTTGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109948.8 ENSMUST00000109949.8 |
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| CDS-3UTR GCA 90 bp | CTTAGCCTTTCACAGACTGAGGAGAGAGTGGAGCAAAGCCGTAGGAAGAAAGAAACCACCAGTGACTCATaGTCATTTGTCACTTGGGAC | + |
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Preference number: 4 (lower is better) Translates to: LSLSQTEERVEQSRRKKETTSDS*SFVTWD Trigger: GTCCCAAGTGACAAATGAGCATGAGTCACTGGTGGT...TTCTTTCTTCCTACGGCTTTGCTCCACTCTCTCCTCAGTCTGTGAAAGGCTAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020689.10 ENSMUST00000109948.8 ENSMUST00000109949.8 |
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| CDS-3UTR CCA 90 bp | GACTGTCACTGGTTCGCTGACCTTCTTCTTCTTTCTGGAACTTTCAAAACTTGGACGCCTTCAGTGTTCTaGTGTTGTGAGAGAGCTGCG | + |
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Preference number: 4 (lower is better) Translates to: DCHWFADLLLLSGTFKTWTPSVF*CCERAA Trigger: CGCAGCTCTCTCACAACACCAGAACACTGAAGGCGT...CCAAGTTTTGAAAGTTCCAGAAAGAAGAAGAAGGTCAGCGAACCAGTGACAGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020689.10 |
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| CDS-3UTR TCA 90 bp | GTGGAGCAAAGCCGTAGGAAGAAAGAAGGCTTGGTCATTATCCTGTTACAGCACGGAGAATTTTTAAACTaGGGTCATCCAAACGGCGGT | + |
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Preference number: 4 (lower is better) Translates to: VEQSRRKKEGLVIILLQHGEFLN*GHPNGG Trigger: ACCGCCGTTTGGATGACCTCAGTTTAAAAATTCTCC...GTGCTGTAACAGGATAATGACCAAGCCTTCTTTCTTCCTACGGCTTTGCTCCAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000109948.8 ENSMUST00000109949.8 |
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| CDS-3UTR TCA 90 bp | CAGACTGAGGAGAGAGTGGAGCAAAGCCGTAGGAAGAAAGAAGGCTTGGTCATTTTTACTTTCATGCTGTaGAAGCCAGAGGAGACTGAA | + |
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Preference number: 4 (lower is better) Translates to: QTEERVEQSRRKKEGLVIFTFML*KPEETE Trigger: TTCAGTCTCCTCTGGCTTTCACAGCATGAAAGTAAA...AATGACCAAGCCTTCTTTCTTCCTACGGCTTTGCTCCACTCTCTCCTCAGTCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000109948.8 ENSMUST00000109949.8 |
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| CDS-3UTR CCA 90 bp | AGCAAAGCCGTAGGAAGAAAGAAGGCTTGGTCATTATCCTGTTACAGCACTTCATCTGTAGGAGCTCTCTaGAAACAAGCCCCTCAGGTA | + |
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Preference number: 4 (lower is better) Translates to: SKAVGRKKAWSLSCYSTSSVGAL*KQAPQV Trigger: TACCTGAGGGGCTTGTTTCCAGAGAGCTCCTACAGA...TGAAGTGCTGTAACAGGATAATGACCAAGCCTTCTTTCTTCCTACGGCTTTGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020689.10 ENSMUST00000109948.8 ENSMUST00000109949.8 |
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| 3UTR CAA 72 bp | TTCAAAACTTGGCTCAATGTGCACAAAATTCATTCTTaGGACTTGACTGCCGCAGGCCTCCTCTTCCTCGTC | + |
|
Preference number: 4 (lower is better) Translates to: FKTWLNVHKIHS*DLTAAGLLFLV Trigger: GACGAGGAAGAGGAGGCCTGCGGCAGTCAAGTCCAAAGAATGAATTTTGTGCACATTGAGCCAAGTTTTGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020689.10 |
||
| CDS-3UTR TCA 90 bp | AACTGCACAGGGAGGGAGGGCATCTGGATTCACATGCTGCTGATCAACTTTGTGATCAGTATATACAATTaGCGGATTAGTAGGGAACAG | + |
|
Preference number: 4 (lower is better) Translates to: NCTGREGIWIHMLLINFVISIYN*RISREQ Trigger: CTGTTCCCTACTAATCCGTCAATTGTATATACTGAT...CACAAAGTTGATCAGCAGCATGTGAATCCAGATGCCCTCCCTCCCTGTGCAGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109948.8 |
||
| CDS-3UTR TCA 90 bp | GTGGAGCAAAGCCGTAGGAAGAAAGAAGGCTTGGTCATTATCCTGTTACAGCACTTTACTTTCATGCTGTaGAAGCCAGAGGAGACTGAA | + |
|
Preference number: 4 (lower is better) Translates to: VEQSRRKKEGLVIILLQHFTFML*KPEETE Trigger: TTCAGTCTCCTCTGGCTTTCACAGCATGAAAGTAAA...GTGCTGTAACAGGATAATGACCAAGCCTTCTTTCTTCCTACGGCTTTGCTCCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109948.8 ENSMUST00000109949.8 |
||
| CDS-3UTR TCA 90 bp | GGGAGGGAGGGCATCTGGATTCACATGCTGCTGATCAACTTTGTGACTGAAATCCAGGTACGTTATACATaGGATACAAGTAGCAAAAAG | + |
|
Preference number: 4 (lower is better) Translates to: GREGIWIHMLLINFVTEIQVRYT*DTSSKK Trigger: CTTTTTGCTACTTGTATCTCATGTATAACGTACCTG...GATTTCAGTCACAAAGTTGATCAGCAGCATGTGAATCCAGATGCCCTCCCTCCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020689.10 ENSMUST00000109948.8 |
||
| CDS-3UTR TCA 90 bp | AGCAAAGCCGTAGGAAGAAAGAAGGCTTGGTCATTATCCTGTTACAGCACTTCAGGAGAATTTTTAAACTaGGGTCATCCAAACGGCGGT | + |
|
Preference number: 4 (lower is better) Translates to: SKAVGRKKAWSLSCYSTSGEFLN*GHPNGG Trigger: ACCGCCGTTTGGATGACCTCAGTTTAAAAATTCTCC...TGAAGTGCTGTAACAGGATAATGACCAAGCCTTCTTTCTTCCTACGGCTTTGCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000109948.8 ENSMUST00000109949.8 |
||
| CDS-3UTR TCA 90 bp | CAGACTGAGGAGAGAGTGGAGCAAAGCCGTAGGAAGAAAGAAGGCTTGGTCATTATCATGTGGGGTCACTaGGTTATAATAATGGAGTTT | + |
|
Preference number: 4 (lower is better) Translates to: QTEERVEQSRRKKEGLVIIMWGH*VIIMEF Trigger: AAACTCCATTATTATAACTCAGTGACCCCACATGAT...AATGACCAAGCCTTCTTTCTTCCTACGGCTTTGCTCCACTCTCTCCTCAGTCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109948.8 ENSMUST00000109949.8 |
||
| CDS-3UTR CCA 90 bp | GGCTTGGTCATTATCCTGTTACAGCACTTCATAGATTTTTGCAAAACAGGTGTAACGCCTTCAGTGTTCTaGTGTTGTGAGAGAGCTGCG | + |
|
Preference number: 4 (lower is better) Translates to: GLVIILLQHFIDFCKTGVTPSVF*CCERAA Trigger: CGCAGCTCTCTCACAACACCAGAACACTGAAGGCGT...TACACCTGTTTTGCAAAAATCTATGAAGTGCTGTAACAGGATAATGACCAAGCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000020689.10 ENSMUST00000109948.8 ENSMUST00000109949.8 |
||
| CDS-3UTR CCA 90 bp | TTTCACAGACTGAGGAGAGAGTGGAGCAAAGCCGTAGGAAGAAAGAAGGCTTGGCTTTCTCAGGTTCCTTaGGATTTGTGTAAAGTGTTA | + |
|
Preference number: 4 (lower is better) Translates to: FHRLRREWSKAVGRKKAWLSQVP*DLCKVL Trigger: TAACACTTTACACAAATCCCAAGGAACCTGAGAAAG...CCAAGCCTTCTTTCTTCCTACGGCTTTGCTCCACTCTCTCCTCAGTCTGTGAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109948.8 ENSMUST00000109949.8 |
||
| CDS-3UTR TCA 90 bp | GGCTTGGTCATTATCCTGTTACAGCACTTCATAGATTTTTGCAAAACAGGTGTACTGTCACTGGTTCGCTaGCCTTCTTCTTCTTTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: GLVIILLQHFIDFCKTGVLSLVR*PSSSFW Trigger: CCAGAAAGAAGAAGAAGGTCAGCGAACCAGTGACAG...TACACCTGTTTTGCAAAAATCTATGAAGTGCTGTAACAGGATAATGACCAAGCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000109948.8 ENSMUST00000109949.8 |
||
| CDS-3UTR CCA 90 bp | CAGCACTTCATAGATTTTTGCAAAACAGGTGTAGCAAAGGCACCTAAGTTTCATTCTGTAGGAGCTCTCTaGAAACAAGCCCCTCAGGTA | + |
|
Preference number: 4 (lower is better) Translates to: QHFIDFCKTGVAKAPKFHSVGAL*KQAPQV Trigger: TACCTGAGGGGCTTGTTTCCAGAGAGCTCCTACAGA...ATGAAACTTAGGTGCCTTTGCTACACCTGTTTTGCAAAAATCTATGAAGTGCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000020689.10 |
||
| CDS-3UTR CCA 90 bp | ACACAACATAGGTCTTACAGGGGAACCAGGCTCCTGAACTGCATGTCAGCTGTTGGAACTTTCAAAACTTaGCTCAATGTGCACAAAATT | + |
|
Preference number: 4 (lower is better) Translates to: TQHRSYRGTRLLNCMSAVGTFKT*LNVHKI Trigger: AATTTTGTGCACATTGAGCCAAGTTTTGAAAGTTCC...AACAGCTGACATGCAGTTCAGGAGCCTGGTTCCCCTGTAAGACCTATGTTGTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000109948.8 |
||
| 3UTR CAA 72 bp | GAGAGAGTGGAGCAAAGCCGTAGGAAGAAAGAAGGCTaGGTCATTATCCTGTTACAGCACTTCATAGATTTT | + |
|
Preference number: 4 (lower is better) Translates to: ERVEQSRRKKEG*VIILLQHFIDF Trigger: AAAATCTATGAAGTGCTGTAACAGGATAATGACCAAGCCTTCTTTCTTCCTACGGCTTTGCTCCACTCTCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020689.10 ENSMUST00000109948.8 ENSMUST00000109949.8 |
||
| CDS-3UTR CCA 90 bp | CTTAGCCTTTCACAGACTGAGGAGAGAGTGGAGCAAAGCCGTAGGAAGAAAGAAGGAACTTTCAAAACTTaGCTCAATGTGCACAAAATT | + |
|
Preference number: 4 (lower is better) Translates to: LSLSQTEERVEQSRRKKEGTFKT*LNVHKI Trigger: AATTTTGTGCACATTGAGCCAAGTTTTGAAAGTTCC...TTCTTTCTTCCTACGGCTTTGCTCCACTCTCTCCTCAGTCTGTGAAAGGCTAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000109948.8 ENSMUST00000109949.8 |
||
| CDS-3UTR TCA 90 bp | AAAGAAGGCTTGGTCATTATCCTGTTACAGCACTTCATAGATTTTTGCAAAACACTTCACCACCACCAGTaGCTCATGCTCATTTGTCAC | + |
|
Preference number: 4 (lower is better) Translates to: KEGLVIILLQHFIDFCKTLHHHQ*LMLICH Trigger: GTGACAAATGAGCATGAGTCACTGGTGGTGGTGAAG...TGTTTTGCAAAAATCTATGAAGTGCTGTAACAGGATAATGACCAAGCCTTCTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000020689.10 ENSMUST00000109948.8 ENSMUST00000109949.8 |
||
| CDS-3UTR GCA 90 bp | AGAAGGCTTGGTCATTATCCTGTTACAGCACTTCATAGATTTTTGCAAAACAGGCACTTTCAAAGCTTGTaGTGCTGCTGTCAAAGTCCA | + |
|
Preference number: 4 (lower is better) Translates to: RRLGHYPVTALHRFLQNRHFQSL*CCCQSP Trigger: TGGACTTTGACAGCAGCAGCACAAGCTTTGAAAGTG...CCTGTTTTGCAAAAATCTATGAAGTGCTGTAACAGGATAATGACCAAGCCTTCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000109948.8 ENSMUST00000109949.8 |
||
| CDS-3UTR GCA 90 bp | GAAGAAAGAAGGCTTGGTCATTATCCTGTTACAGCACTTCATAGATTTTTGCAACACTTTCAAAGCTTGTaGTGCTGCTGTCAAAGTCCA | + |
|
Preference number: 4 (lower is better) Translates to: EERRLGHYPVTALHRFLQHFQSL*CCCQSP Trigger: TGGACTTTGACAGCAGCAGCACAAGCTTTGAAAGTG...TTGCAAAAATCTATGAAGTGCTGTAACAGGATAATGACCAAGCCTTCTTTCTTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000109948.8 ENSMUST00000109949.8 |
||
| 3UTR CAA 72 bp | GGTATATCTCAGTCACTTTCTCAGGTTCCTTGGGATTaGTGTAAAGTGTTAATACTGCCATGTGTAGGTATC | + |
|
Preference number: 4 (lower is better) Translates to: GISQSLSQVPWD*CKVLILPCVGI Trigger: GATACCTACACATGGCAGTATTAACACTTTACACAAATCCCAAGGAACCTGAGAAAGTGACTGAGATATACC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020689.10 |
||
| CDS-3UTR TCA 90 bp | ATTATCCTGTTACAGCACTTCATAGATTTTTGCAAAACAGGTGTAGCAAAGGCAAAACAGCAGGAAGTGTaGATTCACCGCTTCTTTAAA | + |
|
Preference number: 4 (lower is better) Translates to: IILLQHFIDFCKTGVAKAKQQEV*IHRFFK Trigger: TTTAAAGAAGCGGTGAATTCACACTTCCTGCTGTTT...TGCCTTTGCTACACCTGTTTTGCAAAAATCTATGAAGTGCTGTAACAGGATAAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000109948.8 ENSMUST00000109949.8 |
||
| CDS-3UTR TCA 90 bp | GAAGAAAGAAGGCTTGGTCATTATCCTGTTACAGCACTTCATAGATTTTTGCAAAAACAGCAGGAAGTGTaGATTCACCGCTTCTTTAAA | + |
|
Preference number: 4 (lower is better) Translates to: EERRLGHYPVTALHRFLQKQQEV*IHRFFK Trigger: TTTAAAGAAGCGGTGAATTCACACTTCCTGCTGTTT...TTGCAAAAATCTATGAAGTGCTGTAACAGGATAATGACCAAGCCTTCTTTCTTC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000109948.8 ENSMUST00000109949.8 |
||
| CDS-3UTR TCA 90 bp | GGTCATTATCCTGTTACAGCACTTCATAGATTTTTGCAAAACAGGTGTAGCAAACAGGTACGTTATACATaGGATACAAGTAGCAAAAAG | + |
|
Preference number: 4 (lower is better) Translates to: GHYPVTALHRFLQNRCSKQVRYT*DTSSKK Trigger: CTTTTTGCTACTTGTATCTCATGTATAACGTACCTG...TTTGCTACACCTGTTTTGCAAAAATCTATGAAGTGCTGTAACAGGATAATGACC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000020689.10 ENSMUST00000109948.8 ENSMUST00000109949.8 |
||
| CDS-3UTR TCA 90 bp | GAAGAAAGAAGGCTTGGTCATTATCCTGTTACAGCACTTCATAGATTTTTGCAAATCAGTATATACAATTaGCGGATTAGTAGGGAACAG | + |
|
Preference number: 4 (lower is better) Translates to: EERRLGHYPVTALHRFLQISIYN*RISREQ Trigger: CTGTTCCCTACTAATCCGTCAATTGTATATACTGAT...TTGCAAAAATCTATGAAGTGCTGTAACAGGATAATGACCAAGCCTTCTTTCTTC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000109948.8 ENSMUST00000109949.8 |
||
| CDS-3UTR CCA 90 bp | TTGGTCATTATCCTGTTACAGCACTTCATAGATTTTTGCAAAACAGGTGTAGCACTTTCTCAGGTTCCTTaGGATTTGTGTAAAGTGTTA | + |
|
Preference number: 4 (lower is better) Translates to: LVIILLQHFIDFCKTGVALSQVP*DLCKVL Trigger: TAACACTTTACACAAATCCCAAGGAACCTGAGAAAG...TGCTACACCTGTTTTGCAAAAATCTATGAAGTGCTGTAACAGGATAATGACCAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000109948.8 ENSMUST00000109949.8 |
||
| CDS-3UTR CAA 90 bp | TTACAGGGGAACCAGGCTCCTGAACTGCATGTCAGCTGTTTGGGATTGGCCAACGTGACTCATGCTCATTaGTCACTTGGGACGGGAAAA | + |
|
Preference number: 5 (lower is better) Translates to: LQGNQAPELHVSCLGLANVTHAH*SLGTGK Trigger: TTTTCCCGTCCCAAGTGACAAATGAGCATGAGTCAC...GTTGGCCAATCCCAAACAGCTGACATGCAGTTCAGGAGCCTGGTTCCCCTGTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020689.10 ENSMUST00000109948.8 |
||
| CDS-3UTR CAA 90 bp | CTCTGCGATCCAGGTTCCTTCTGGAGAAGTGAACCTAGGGCCTGCTCAATAGCTATGCTCATTTGTCACTaGGGACGGGAAAATCGTGTT | + |
|
Preference number: 5 (lower is better) Translates to: LCDPGSFWRSEPRACSIAMLICH*GRENRV Trigger: AACACGATTTTCCCGTCCCAAGTGACAAATGAGCAT...AGCTATTGAGCAGGCCCTAGGTTCACTTCTCCAGAAGGAACCTGGATCGCAGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020689.10 ENSMUST00000109948.8 ENSMUST00000109949.8 |
||
| CDS CCA 90 bp | AAAAGCTTCTTCACCACCACCAGTGACTCATGCTCATTTGTCACTTaGGACGGGAAAATCGTGTTCTTAGACGCCTTCAGTGTTCTGGTG | + |
|
Preference number: 5 (lower is better) Translates to: KSFFTTTSDSCSFVT*DGKIVFLDAFSVLV Trigger: CACCAGAACACTGAAGGCGTCTAAGAACACGATTTTCCCGTCCCAAGTGACAAATGAGCATGAGTCACTGGTGGTGGTGAAGAAGCTTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000020689.10 ENSMUST00000109948.8 ENSMUST00000109949.8 ENSMUST00000130174.2 |
||
| CDS-3UTR CAA 90 bp | TTAGCCTTTCACAGACTGAGGAGAGAGTGGAGCAAAGCCGTAGGAAGAAAGAAGGTGACTCATGCTCATTaGTCACTTGGGACGGGAAAA | + |
|
Preference number: 5 (lower is better) Translates to: LAFHRLRREWSKAVGRKKVTHAH*SLGTGK Trigger: TTTTCCCGTCCCAAGTGACAAATGAGCATGAGTCAC...CTTCTTTCTTCCTACGGCTTTGCTCCACTCTCTCCTCAGTCTGTGAAAGGCTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020689.10 ENSMUST00000109948.8 ENSMUST00000109949.8 |
||
| CDS-3UTR CAA 90 bp | CATATAAATCATGCCTGGCTAAGCACCTCCACACATATCCTATGCTGCGCTGTGTCCCACTTTCAAAGCTaGTGCTGCTGCTGTCAAAGT | + |
|
Preference number: 5 (lower is better) Translates to: HINHAWLSTSTHILCCAVSHFQS*CCCCQS Trigger: ACTTTGACAGCAGCAGCACAAGCTTTGAAAGTGGGA...CACAGCGCAGCATAGGATATGTGTGGAGGTGCTTAGCCAGGCATGATTTATATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109948.8 |
||
| CDS-3UTR CAA 90 bp | CTTAGCCTTTCACAGACTGAGGAGAGAGTGGAGCAAAGCCGTAGGAAGAAAGAATCCCACTTTCAAAGCTaGTGCTGCTGCTGTCAAAGT | + |
|
Preference number: 5 (lower is better) Translates to: LSLSQTEERVEQSRRKKESHFQS*CCCCQS Trigger: ACTTTGACAGCAGCAGCACAAGCTTTGAAAGTGGGA...TTCTTTCTTCCTACGGCTTTGCTCCACTCTCTCCTCAGTCTGTGAAAGGCTAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109948.8 ENSMUST00000109949.8 |
||
| CDS GCA 90 bp | GAGATACAAGTAGCAAAAAGCTTCTTCACCACCACCAGTGACTCATaGTCATTTGTCACTTGGGACGGGAAAATCGTGTTCTTAGACGCC | + |
|
Preference number: 5 (lower is better) Translates to: EIQVAKSFFTTTSDS*SFVTWDGKIVFLDA Trigger: GGCGTCTAAGAACACGATTTTCCCGTCCCAAGTGACAAATGAGCATGAGTCACTGGTGGTGGTGAAGAAGCTTTTTGCTACTTGTATCTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000020689.10 ENSMUST00000109948.8 ENSMUST00000109949.8 ENSMUST00000130174.2 |
||
| CDS-3UTR CAA 90 bp | AGAAGGCTTGGTCATTATCCTGTTACAGCACTTCATAGATTTTTGCAAAACAGGTTTAAAGCCAGGGGGTaGGTAATCATGTGGGGTCAC | + |
|
Preference number: 5 (lower is better) Translates to: RRLGHYPVTALHRFLQNRFKARG*VIMWGH Trigger: GTGACCCCACATGATTACCAACCCCCTGGCTTTAAA...CCTGTTTTGCAAAAATCTATGAAGTGCTGTAACAGGATAATGACCAAGCCTTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENSMUST00000109948.8 ENSMUST00000109949.8 |
||
| CDS-3UTR CAA 90 bp | GAAGAAAGAAGGCTTGGTCATTATCCTGTTACAGCACTTCATAGATTTTTGCAATTTAAAGCCAGGGGGTaGGTAATCATGTGGGGTCAC | + |
|
Preference number: 5 (lower is better) Translates to: EERRLGHYPVTALHRFLQFKARG*VIMWGH Trigger: GTGACCCCACATGATTACCAACCCCCTGGCTTTAAA...TTGCAAAAATCTATGAAGTGCTGTAACAGGATAATGACCAAGCCTTCTTTCTTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000109948.8 ENSMUST00000109949.8 |
||
| CDS-3UTR CAA 90 bp | GAAGAAAGAAGGCTTGGTCATTATCCTGTTACAGCACTTCATAGATTTTTGCAAATGCTCATTTGTCACTaGGGACGGGAAAATCGTGTT | + |
|
Preference number: 5 (lower is better) Translates to: EERRLGHYPVTALHRFLQMLICH*GRENRV Trigger: AACACGATTTTCCCGTCCCAAGTGACAAATGAGCAT...TTGCAAAAATCTATGAAGTGCTGTAACAGGATAATGACCAAGCCTTCTTTCTTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000020689.10 ENSMUST00000109948.8 ENSMUST00000109949.8 |
||
| CDS-3UTR CAA 90 bp | ATTATCCTGTTACAGCACTTCATAGATTTTTGCAAAACAGGTGTAGCAAAGGCAATGCTCATTTGTCACTaGGGACGGGAAAATCGTGTT | + |
|
Preference number: 5 (lower is better) Translates to: IILLQHFIDFCKTGVAKAMLICH*GRENRV Trigger: AACACGATTTTCCCGTCCCAAGTGACAAATGAGCAT...TGCCTTTGCTACACCTGTTTTGCAAAAATCTATGAAGTGCTGTAACAGGATAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000020689.10 ENSMUST00000109948.8 ENSMUST00000109949.8 |
||
| CDS TCA 72 bp | CCGGACACTTTTTGTCTTCCCGGAGAATTTTTAAACTaGGGTCATCCAAACGGCGGTCTCTGTAGGAGCTCT | + |
|
Preference number: 6 (lower is better) Translates to: PDTFCLPGEFLN*GHPNGGLCRSS Trigger: AGAGCTCCTACAGAGACCGCCGTTTGGATGACCTCAGTTTAAAAATTCTCCGGGAAGACAAAAAGTGTCCGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000109948.8 ENSMUST00000109949.8 ENSMUST00000130174.2 |
||
| CDS CCA 72 bp | TTCACCACCACCAGTGACTCATGCTCATTTGTCACTTaGGACGGGAAAATCGTGTTCTTAGACGCCTTCAGT | + |
|
Preference number: 6 (lower is better) Translates to: FTTTSDSCSFVT*DGKIVFLDAFS Trigger: ACTGAAGGCGTCTAAGAACACGATTTTCCCGTCCCAAGTGACAAATGAGCATGAGTCACTGGTGGTGGTGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000020689.10 ENSMUST00000109948.8 ENSMUST00000109949.8 ENSMUST00000130174.2 |
||
| CDS GCA 72 bp | GTAGCAAAAAGCTTCTTCACCACCACCAGTGACTCATaGTCATTTGTCACTTGGGACGGGAAAATCGTGTTC | + |
|
Preference number: 6 (lower is better) Translates to: VAKSFFTTTSDS*SFVTWDGKIVF Trigger: GAACACGATTTTCCCGTCCCAAGTGACAAATGAGCATGAGTCACTGGTGGTGGTGAAGAAGCTTTTTGCTAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000020689.10 ENSMUST00000109948.8 ENSMUST00000109949.8 ENSMUST00000130174.2 |
||
| CDS TCA 72 bp | GCTCTCTGGAAACAAGCCCCTCAGGTACGTTATACATaGGATACAAGTAGCAAAAAGCTTCTTCACCACCAC | + |
|
Preference number: 6 (lower is better) Translates to: ALWKQAPQVRYT*DTSSKKLLHHH Trigger: GTGGTGGTGAAGAAGCTTTTTGCTACTTGTATCTCATGTATAACGTACCTGAGGGGCTTGTTTCCAGAGAGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000020689.10 ENSMUST00000109948.8 ENSMUST00000109949.8 ENSMUST00000130174.2 |
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