Pregenerated sensors for HORMAD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028109Ensembl transcript IDs: ENSMUST00000029754.13, ENSMUST00000090797.11, ENSMUST00000107154.4, ENSMUST00000171191.6
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CAGAAGGCACACCTTCAAATAATACAGCATATTAGTTTAAATGTTGAGAACTGCCTAGATTCCAAGACGTaGAGGACCTTTAACTCCAAG | + |
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Preference number: 2 (lower is better) Translates to: QKAHLQIIQHISLNVENCLDSKT*RTFNSK Trigger: CTTGGAGTTAAAGGTCCTTCACGTCTTGGAATCTAG...GCAGTTCTCAACATTTAAACTAATATGCTGTATTATTTGAAGGTGTGCCTTCTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000090797.11 ENSMUST00000107154.4 |
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| 3UTR-3UTR TCA 90 bp | CAGAAGGCACACCTTCAAATAATACAGCATATTAGTTTAAATGTTGAGAACTGCCCTTTTCTTCAGCACTaGCTCTTGACTAGATTCCAA | + |
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Preference number: 2 (lower is better) Translates to: QKAHLQIIQHISLNVENCPFLQH*LLTRFQ Trigger: TTGGAATCTAGTCAAGAGTCAGTGCTGAAGAAAAGG...GCAGTTCTCAACATTTAAACTAATATGCTGTATTATTTGAAGGTGTGCCTTCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000090797.11 ENSMUST00000107154.4 |
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| 3UTR TCA 72 bp | TTTAAGCCTGGAGAGATGGCTCAGTGGTTGAGAGGATaGACTGCTCCTTTAGACCCTATGTTCCATTCCCAG | + |
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Preference number: 3 (lower is better) Translates to: FKPGEMAQWLRG*TAPLDPMFHSQ Trigger: CTGGGAATGGAACATAGGGTCTAAAGGAGCAGTTCATCCTCTCAACCACTGAGCCATCTCTCCAGGCTTAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171191.6 |
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| CDS-3UTR TCA 90 bp | CAGAAGGCACACCTTCAAATAATACAGCATATTAGTTTAAATGTTGAGAACTGCCATTCTGAAATTGTCTaGGGATCTCCTGGATTGGTG | + |
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Preference number: 4 (lower is better) Translates to: QKAHLQIIQHISLNVENCHSEIV*GSPGLV Trigger: CACCAATCCAGGAGATCCTCAGACAATTTCAGAATG...GCAGTTCTCAACATTTAAACTAATATGCTGTATTATTTGAAGGTGTGCCTTCTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029754.13 ENSMUST00000090797.11 ENSMUST00000107154.4 |
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| CDS-3UTR GCA 90 bp | CAGAAGGCACACCTTCAAATAATACAGCATATTAGTTTAAATGTTGAGAACTGCATTGGGAAATACCAATaGACTCAGGGAAGCTGTCCT | + |
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Preference number: 4 (lower is better) Translates to: QKAHLQIIQHISLNVENCIGKYQ*TQGSCP Trigger: AGGACAGCTTCCCTGAGTGCATTGGTATTTCCCAAT...GCAGTTCTCAACATTTAAACTAATATGCTGTATTATTTGAAGGTGTGCCTTCTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029754.13 ENSMUST00000090797.11 ENSMUST00000107154.4 |
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| CDS-3UTR TCA 90 bp | CAGAAGGCACACCTTCAAATAATACAGCATATTAGTTTAAATGTTGAGAACTGCAAACTGGTAACATTCTaGAATTGTCTGAGGATCTCC | + |
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Preference number: 4 (lower is better) Translates to: QKAHLQIIQHISLNVENCKLVTF*NCLRIS Trigger: GGAGATCCTCAGACAATTTCAGAATGTTACCAGTTT...GCAGTTCTCAACATTTAAACTAATATGCTGTATTATTTGAAGGTGTGCCTTCTG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029754.13 ENSMUST00000090797.11 ENSMUST00000107154.4 |
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| CDS-3UTR TCA 90 bp | CAGAAGGCACACCTTCAAATAATACAGCATATTAGTTTAAATGTTGAGAACTGCTTTAATCTGAAGGTGTaGAAAGGTGTTGGGACTTCT | + |
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Preference number: 4 (lower is better) Translates to: QKAHLQIIQHISLNVENCFNLKV*KGVGTS Trigger: AGAAGTCCCAACACCTTTTCACACCTTCAGATTAAA...GCAGTTCTCAACATTTAAACTAATATGCTGTATTATTTGAAGGTGTGCCTTCTG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029754.13 ENSMUST00000090797.11 ENSMUST00000107154.4 |
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| CDS-3UTR TCA 90 bp | CAGAAGGCACACCTTCAAATAATACAGCATATTAGTTTAAATGTTGAGAACTGCACTGTTTTCCTAAATTaGCGAAGACTTCTCTTCCGA | + |
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Preference number: 4 (lower is better) Translates to: QKAHLQIIQHISLNVENCTVFLN*RRLLFR Trigger: TCGGAAGAGAAGTCTTCGTCAATTTAGGAAAACAGT...GCAGTTCTCAACATTTAAACTAATATGCTGTATTATTTGAAGGTGTGCCTTCTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029754.13 |
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| CDS-3UTR GCA 90 bp | CAGAAGGCACACCTTCAAATAATACAGCATATTAGTTTAAATGTTGAGAACTGCAATGAGGAGAATACTTaGTTTCTTGGTGTCAGCAGA | + |
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Preference number: 4 (lower is better) Translates to: QKAHLQIIQHISLNVENCNEENT*FLGVSR Trigger: TCTGCTGACACCAAGAAAGCAAGTATTCTCCTCATT...GCAGTTCTCAACATTTAAACTAATATGCTGTATTATTTGAAGGTGTGCCTTCTG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029754.13 ENSMUST00000090797.11 ENSMUST00000107154.4 |
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| CDS-3UTR TCA 90 bp | CAGAAGGCACACCTTCAAATAATACAGCATATTAGTTTAAATGTTGAGAACTGCCTTCTTTCAGAATTTTaGCACAGAGATCATCCAGAT | + |
|
Preference number: 4 (lower is better) Translates to: QKAHLQIIQHISLNVENCLLSEF*HRDHPD Trigger: ATCTGGATGATCTCTGTGTCAAAATTCTGAAAGAAG...GCAGTTCTCAACATTTAAACTAATATGCTGTATTATTTGAAGGTGTGCCTTCTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029754.13 ENSMUST00000090797.11 ENSMUST00000107154.4 |
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| CDS-3UTR TCA 90 bp | CAGAAGGCACACCTTCAAATAATACAGCATATTAGTTTAAATGTTGAGAACTGCCTAAATTTGGTTCTTTaGTTTCAGAAGCTCCAGAGT | + |
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Preference number: 4 (lower is better) Translates to: QKAHLQIIQHISLNVENCLNLVL*FQKLQS Trigger: ACTCTGGAGCTTCTGAAATCAAAGAACCAAATTTAG...GCAGTTCTCAACATTTAAACTAATATGCTGTATTATTTGAAGGTGTGCCTTCTG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029754.13 ENSMUST00000090797.11 ENSMUST00000107154.4 |
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| CDS-3UTR TCA 90 bp | CAGAAGGCACACCTTCAAATAATACAGCATATTAGTTTAAATGTTGAGAACTGCCTGACAATGAGAAATTaGAGGACTTTGGCTCTTTTT | + |
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Preference number: 4 (lower is better) Translates to: QKAHLQIIQHISLNVENCLTMRN*RTLALF Trigger: AAAAAGAGCCAAAGTCCTTCAATTTCTCATTGTCAG...GCAGTTCTCAACATTTAAACTAATATGCTGTATTATTTGAAGGTGTGCCTTCTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029754.13 ENSMUST00000090797.11 ENSMUST00000107154.4 |
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| CDS-3UTR TCA 90 bp | CAGAAGGCACACCTTCAAATAATACAGCATATTAGTTTAAATGTTGAGAACTGCATTGTTTTCCTAAATTaGCGAAGACTTCTCTTCCGA | + |
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Preference number: 4 (lower is better) Translates to: QKAHLQIIQHISLNVENCIVFLN*RRLLFR Trigger: TCGGAAGAGAAGTCTTCGTCAATTTAGGAAAACAAT...GCAGTTCTCAACATTTAAACTAATATGCTGTATTATTTGAAGGTGTGCCTTCTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000090797.11 ENSMUST00000107154.4 |
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| CDS-3UTR CCA 90 bp | CAGAAGGCACACCTTCAAATAATACAGCATATTAGTTTAAATGTTGAGAACTGCCCCATAAGCACGTTCTaGAAATATTCCTCTCAAATA | + |
|
Preference number: 4 (lower is better) Translates to: QKAHLQIIQHISLNVENCPISTF*KYSSQI Trigger: TATTTGAGAGGAATATTTCCAGAACGTGCTTATGGG...GCAGTTCTCAACATTTAAACTAATATGCTGTATTATTTGAAGGTGTGCCTTCTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029754.13 ENSMUST00000090797.11 ENSMUST00000107154.4 |
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| CDS-3UTR GCA 90 bp | CAGAAGGCACACCTTCAAATAATACAGCATATTAGTTTAAATGTTGAGAACTGCTCACCTACACTCAGGTaGATTTATTGTTTTCCTAAA | + |
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Preference number: 4 (lower is better) Translates to: QKAHLQIIQHISLNVENCSPTLR*IYCFPK Trigger: TTTAGGAAAACAATAAATGCACCTGAGTGTAGGTGA...GCAGTTCTCAACATTTAAACTAATATGCTGTATTATTTGAAGGTGTGCCTTCTG 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000090797.11 ENSMUST00000107154.4 |
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| CDS-3UTR CAA 90 bp | CAGAAGGCACACCTTCAAATAATACAGCATATTAGTTTAAATGTTGAGAACTGCAGGTGTGAAAAGGTGTaGGGACTTCTCCCACATTTA | + |
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Preference number: 5 (lower is better) Translates to: QKAHLQIIQHISLNVENCRCEKV*GLLPHL Trigger: TAAATGTGGGAGAAGTCCCAACACCTTTTCACACCT...GCAGTTCTCAACATTTAAACTAATATGCTGTATTATTTGAAGGTGTGCCTTCTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029754.13 ENSMUST00000090797.11 ENSMUST00000107154.4 |
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| CDS-3UTR CAA 90 bp | CAGAAGGCACACCTTCAAATAATACAGCATATTAGTTTAAATGTTGAGAACTGCGGTAACATTCTGAAATaGTCTGAGGATCTCCTGGAT | + |
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Preference number: 5 (lower is better) Translates to: QKAHLQIIQHISLNVENCGNILK*SEDLLD Trigger: ATCCAGGAGATCCTCAGACAATTTCAGAATGTTACC...GCAGTTCTCAACATTTAAACTAATATGCTGTATTATTTGAAGGTGTGCCTTCTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029754.13 ENSMUST00000090797.11 ENSMUST00000107154.4 |
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| CDS-3UTR CAA 90 bp | CAGAAGGCACACCTTCAAATAATACAGCATATTAGTTTAAATGTTGAGAACTGCGACTGTTTTCCTAAATaGACGAAGACTTCTCTTCCG | + |
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Preference number: 5 (lower is better) Translates to: QKAHLQIIQHISLNVENCDCFPK*TKTSLP Trigger: CGGAAGAGAAGTCTTCGTCAATTTAGGAAAACAGTC...GCAGTTCTCAACATTTAAACTAATATGCTGTATTATTTGAAGGTGTGCCTTCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029754.13 |
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| CDS-3UTR CAA 90 bp | CAGAAGGCACACCTTCAAATAATACAGCATATTAGTTTAAATGTTGAGAACTGCAGAATACTTGCTTTCTaGGTGTCAGCAGATGTTGTA | + |
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Preference number: 5 (lower is better) Translates to: QKAHLQIIQHISLNVENCRILAF*VSADVV Trigger: TACAACATCTGCTGACACCAAGAAAGCAAGTATTCT...GCAGTTCTCAACATTTAAACTAATATGCTGTATTATTTGAAGGTGTGCCTTCTG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029754.13 ENSMUST00000090797.11 ENSMUST00000107154.4 |
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| CDS-3UTR CAA 90 bp | CAGAAGGCACACCTTCAAATAATACAGCATATTAGTTTAAATGTTGAGAACTGCCCTGACAATGAGAAATaGAAGGACTTTGGCTCTTTT | + |
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Preference number: 5 (lower is better) Translates to: QKAHLQIIQHISLNVENCPDNEK*KDFGSF Trigger: AAAAGAGCCAAAGTCCTTCAATTTCTCATTGTCAGG...GCAGTTCTCAACATTTAAACTAATATGCTGTATTATTTGAAGGTGTGCCTTCTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029754.13 ENSMUST00000090797.11 ENSMUST00000107154.4 |
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| CDS-3UTR CAA 90 bp | CAGAAGGCACACCTTCAAATAATACAGCATATTAGTTTAAATGTTGAGAACTGCTCTTCTTTCAGAATTTaGACACAGAGATCATCCAGA | + |
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Preference number: 5 (lower is better) Translates to: QKAHLQIIQHISLNVENCSSFRI*TQRSSR Trigger: TCTGGATGATCTCTGTGTCAAAATTCTGAAAGAAGA...GCAGTTCTCAACATTTAAACTAATATGCTGTATTATTTGAAGGTGTGCCTTCTG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029754.13 ENSMUST00000090797.11 ENSMUST00000107154.4 |
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| CDS-3UTR CAA 90 bp | CAGAAGGCACACCTTCAAATAATACAGCATATTAGTTTAAATGTTGAGAACTGCTCTAAATTTGGTTCTTaGATTTCAGAAGCTCCAGAG | + |
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Preference number: 5 (lower is better) Translates to: QKAHLQIIQHISLNVENCSKFGS*ISEAPE Trigger: CTCTGGAGCTTCTGAAATCAAAGAACCAAATTTAGA...GCAGTTCTCAACATTTAAACTAATATGCTGTATTATTTGAAGGTGTGCCTTCTG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029754.13 ENSMUST00000090797.11 ENSMUST00000107154.4 |
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| CDS-3UTR CAA 90 bp | CAGAAGGCACACCTTCAAATAATACAGCATATTAGTTTAAATGTTGAGAACTGCGGACTTTGGCTCTTTTaGAATTGCATAGTTTCTTCT | + |
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Preference number: 5 (lower is better) Translates to: QKAHLQIIQHISLNVENCGLWLF*NCIVSS Trigger: AGAAGAAACTATGCAATTCAAAAAGAGCCAAAGTCC...GCAGTTCTCAACATTTAAACTAATATGCTGTATTATTTGAAGGTGTGCCTTCTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029754.13 ENSMUST00000090797.11 ENSMUST00000107154.4 |
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| CDS-3UTR CAA 90 bp | CAGAAGGCACACCTTCAAATAATACAGCATATTAGTTTAAATGTTGAGAACTGCTATTGTTTTCCTAAATaGACGAAGACTTCTCTTCCG | + |
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Preference number: 5 (lower is better) Translates to: QKAHLQIIQHISLNVENCYCFPK*TKTSLP Trigger: CGGAAGAGAAGTCTTCGTCAATTTAGGAAAACAATA...GCAGTTCTCAACATTTAAACTAATATGCTGTATTATTTGAAGGTGTGCCTTCTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000090797.11 ENSMUST00000107154.4 |
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| CDS CAA 90 bp | AAACAGCTAGGAGCCTCTTCACAAACATCAAAGATTGATGCTCAGTaGATATCTTATTGGGAAATACCAATGCACTCAGGGAAGCTGTCC | + |
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Preference number: 6 (lower is better) Translates to: KQLGASSQTSKIDAQ*ISYWEIPMHSGKLS Trigger: GGACAGCTTCCCTGAGTGCATTGGTATTTCCCAATAAGATATCAACTGAGCATCAATCTTTGATGTTTGTGAAGAGGCTCCTAGCTGTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029754.13 ENSMUST00000090797.11 ENSMUST00000107154.4 ENSMUST00000171191.6 |
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