Pregenerated sensors for HOPX (Mus musculus)
Ensembl gene IDs: ENSMUSG00000059325Ensembl transcript IDs: ENSMUST00000081964.7, ENSMUST00000113453.9, ENSMUST00000120827.9
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGAAGCCAGGCAGCTCTGAAGGGGATGGTCCATATGAATTACTACTaGAAGGTGATGGCCAAGGGCAAACGAAGACGGTTCCCACATCAT | + |
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Preference number: 1 (lower is better) Translates to: RSQAALKGMVHMNYY*KVMAKGKRRRFPHH Trigger: ATGATGTGGGAACCGTCTTCGTTTGCCCTTGGCCATCACCTTCCAGTAGTAATTCATATGGACCATCCCCTTCAGAGCTGCCTGGCTTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| 3UTR TCA 90 bp | ACCACCAGTGTGTTTAGTGAAGCAGAAGGAGGGAGCACAGGGAAGTaGACTCAGGAGGTGTTCCCCTGCCTGTTCTGTTATCTTTTCAAT | + |
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Preference number: 1 (lower is better) Translates to: TTSVFSEAEGGSTGK*TQEVFPCLFCYLFN Trigger: ATTGAAAAGATAACAGAACAGGCAGGGGAACACCTCCTGAGTTCACTTCCCTGTGCTCCCTCCTTCTGCTTCACTAAACACACTGGTGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| 3UTR-3UTR GCA 90 bp | CATATGAATTACTACTGGAAGGTGATGGCCAAGGGCAAACGAAGACGGTTCCCAGGCAAGCCACACCCCTaGCCCCAGCCAAGCCATCAC | + |
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Preference number: 2 (lower is better) Translates to: HMNYYWKVMAKGKRRRFPGKPHP*PQPSHH Trigger: GTGATGGCTTGGCTGGGGGCAGGGGTGTGGCTTGCC...TGGGAACCGTCTTCGTTTGCCCTTGGCCATCACCTTCCAGTAGTAATTCATATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| 3UTR-3UTR GCA 90 bp | CTACTTGCTTTTCTGCCCCTTGGAATCCATAGCTGCTATACTAGGTTGCTTTCCGGCAAGCCACACCCCTaGCCCCAGCCAAGCCATCAC | + |
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Preference number: 2 (lower is better) Translates to: LLAFLPLGIHSCYTRLLSGKPHP*PQPSHH Trigger: GTGATGGCTTGGCTGGGGGCAGGGGTGTGGCTTGCC...GGAAAGCAACCTAGTATAGCAGCTATGGATTCCAAGGGGCAGAAAAGCAAGTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| 3UTR-3UTR TCA 90 bp | CGTTCTCATTCAACCACCAGTGTGTTTAGTGAAGCAGAAGGAGGGAGCACAGGGATTACTACTGGAAGGTaGTGGCCAAGGGCAAACGAA | + |
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Preference number: 2 (lower is better) Translates to: RSHSTTSVFSEAEGGSTGITTGR*WPRANE Trigger: TTCGTTTGCCCTTGGCCATCACCTTCCAGTAGTAAT...CCCTGTGCTCCCTCCTTCTGCTTCACTAAACACACTGGTGGTTGAATGAGAACG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| 3UTR-3UTR TCA 90 bp | CGTTCTCATTCAACCACCAGTGTGTTTAGTGAAGCAGAAGGAGGGAGCACAGGGCATTCAACACTGCACTaGAACATCAAAACAGCCTGG | + |
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Preference number: 2 (lower is better) Translates to: RSHSTTSVFSEAEGGSTGHSTLH*NIKTAW Trigger: CCAGGCTGTTTTGATGTTTCAGTGCAGTGTTGAATG...CCCTGTGCTCCCTCCTTCTGCTTCACTAAACACACTGGTGGTTGAATGAGAACG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| 3UTR-3UTR TCA 90 bp | CCATATGAATTACTACTGGAAGGTGATGGCCAAGGGCAAACGAAGACGGTTCCCAGGACAGCAAAACAATaGGACATTCAACACTGCACT | + |
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Preference number: 2 (lower is better) Translates to: PYELLLEGDGQGQTKTVPRTAKQ*DIQHCT Trigger: AGTGCAGTGTTGAATGTCTCATTGTTTTGCTGTCCT...GGGAACCGTCTTCGTTTGCCCTTGGCCATCACCTTCCAGTAGTAATTCATATGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| 3UTR-3UTR TCA 90 bp | GAAGGTGATGGCCAAGGGCAAACGAAGACGGTTCCCACATCATCTTTCATTAAACATTCAACACTGCACTaGAACATCAAAACAGCCTGG | + |
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Preference number: 2 (lower is better) Translates to: EGDGQGQTKTVPTSSFIKHSTLH*NIKTAW Trigger: CCAGGCTGTTTTGATGTTTCAGTGCAGTGTTGAATG...TTTAATGAAAGATGATGTGGGAACCGTCTTCGTTTGCCCTTGGCCATCACCTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| 3UTR-3UTR TCA 90 bp | CAAATACACCCACGTTCTCATTCAACCACCAGTGTGTTTAGTGAAGCAGAAGGAATTACTACTGGAAGGTaGTGGCCAAGGGCAAACGAA | + |
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Preference number: 2 (lower is better) Translates to: QIHPRSHSTTSVFSEAEGITTGR*WPRANE Trigger: TTCGTTTGCCCTTGGCCATCACCTTCCAGTAGTAAT...TCCTTCTGCTTCACTAAACACACTGGTGGTTGAATGAGAACGTGGGTGTATTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| 3UTR-3UTR TCA 90 bp | CTTTTCAATAGAAGCCAGGCAGCTCTGAAGGGGATGGTCCATATGAATTACTACCATTCAACACTGCACTaGAACATCAAAACAGCCTGG | + |
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Preference number: 2 (lower is better) Translates to: LFNRSQAALKGMVHMNYYHSTLH*NIKTAW Trigger: CCAGGCTGTTTTGATGTTTCAGTGCAGTGTTGAATG...GTAGTAATTCATATGGACCATCCCCTTCAGAGCTGCCTGGCTTCTATTGAAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| 3UTR-3UTR TCA 90 bp | CTACTTGCTTTTCTGCCCCTTGGAATCCATAGCTGCTATACTAGGTTGCTTTCCAGGACAGCAAAACAATaGGACATTCAACACTGCACT | + |
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Preference number: 2 (lower is better) Translates to: LLAFLPLGIHSCYTRLLSRTAKQ*DIQHCT Trigger: AGTGCAGTGTTGAATGTCTCATTGTTTTGCTGTCCT...GGAAAGCAACCTAGTATAGCAGCTATGGATTCCAAGGGGCAGAAAAGCAAGTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| 3UTR-3UTR CCA 90 bp | CAAATACACCCACGTTCTCATTCAACCACCAGTGTGTTTAGTGAAGCAGAAGGACATATGAATTACTACTaGAAGGTGATGGCCAAGGGC | + |
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Preference number: 2 (lower is better) Translates to: QIHPRSHSTTSVFSEAEGHMNYY*KVMAKG Trigger: GCCCTTGGCCATCACCTTCCAGTAGTAATTCATATG...TCCTTCTGCTTCACTAAACACACTGGTGGTTGAATGAGAACGTGGGTGTATTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| 3UTR CCA 72 bp | GCAGCTCTGAAGGGGATGGTCCATATGAATTACTACTaGAAGGTGATGGCCAAGGGCAAACGAAGACGGTTC | + |
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Preference number: 3 (lower is better) Translates to: AALKGMVHMNYY*KVMAKGKRRRF Trigger: GAACCGTCTTCGTTTGCCCTTGGCCATCACCTTCCAGTAGTAATTCATATGGACCATCCCCTTCAGAGCTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| CDS-3UTR CCA 90 bp | CCGAGGGAAGGAAGAAGAGATGGAGTTCCAAGAGCAAGCTCAAGGGCCTGGCTCCCACCTGGTCCTCCGTaGGGCCGCTCGCGGTCTGCG | + |
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Preference number: 4 (lower is better) Translates to: PREGRRDGVPRASSRAWLPPGPP*GRSRSA Trigger: CGCAGACCGCGAGCGGCCCCACGGAGGACCAGGTGG...GAGCCAGGCCCTTGAGCTTGCTCTTGGAACTCCATCTCTTCTTCCTTCCCTCGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| CDS-3UTR TCA 90 bp | CCGAGGGAAGGAAGAAGAGATGGAGTTCCAAGAGCAAGCTCAAGGGCCTGGCTCCGAAGGCAAGCCTTCTaGCCGCCGCCACTCTGCCAG | + |
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Preference number: 4 (lower is better) Translates to: PREGRRDGVPRASSRAWLRRQAF*PPPLCQ Trigger: CTGGCAGAGTGGCGGCGGTCAGAAGGCTTGCCTTCG...GAGCCAGGCCCTTGAGCTTGCTCTTGGAACTCCATCTCTTCTTCCTTCCCTCGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| CDS-3UTR CCA 90 bp | CGTTCTCATTCAACCACCAGTGTGTTTAGTGAAGCAGAAGGAGGGAGCACAGGGCCACCTGGTCCTCCGTaGGGCCGCTCGCGGTCTGCG | + |
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Preference number: 4 (lower is better) Translates to: RSHSTTSVFSEAEGGSTGPPGPP*GRSRSA Trigger: CGCAGACCGCGAGCGGCCCCACGGAGGACCAGGTGG...CCCTGTGCTCCCTCCTTCTGCTTCACTAAACACACTGGTGGTTGAATGAGAACG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| CDS-3UTR TCA 90 bp | CGTTCTCATTCAACCACCAGTGTGTTTAGTGAAGCAGAAGGAGGGAGCACAGGGCCGCCTCGGCTGCGATaGGGCACAGCGTGGTGGGGT | + |
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Preference number: 4 (lower is better) Translates to: RSHSTTSVFSEAEGGSTGPPRLR*GTAWWG Trigger: ACCCCACCACGCTGTGCCTCATCGCAGCCGAGGCGG...CCCTGTGCTCCCTCCTTCTGCTTCACTAAACACACTGGTGGTTGAATGAGAACG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| CDS-3UTR CCA 90 bp | AGGAGGTGTTCCCCTGCCTGTTCTGTTATCTTTTCAATAGAAGCCAGGCAGCTCCCACCTGGTCCTCCGTaGGGCCGCTCGCGGTCTGCG | + |
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Preference number: 4 (lower is better) Translates to: RRCSPACSVIFSIEARQLPPGPP*GRSRSA Trigger: CGCAGACCGCGAGCGGCCCCACGGAGGACCAGGTGG...GAGCTGCCTGGCTTCTATTGAAAAGATAACAGAACAGGCAGGGGAACACCTCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| CDS-3UTR TCA 90 bp | AGCCTGGGTAAGCCGAGGGAAGGAAGAAGAGATGGAGTTCCAAGAGCAAGCTCACGAAGGCAAGCCTTCTaGCCGCCGCCACTCTGCCAG | + |
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Preference number: 4 (lower is better) Translates to: SLGKPREGRRDGVPRASSRRQAF*PPPLCQ Trigger: CTGGCAGAGTGGCGGCGGTCAGAAGGCTTGCCTTCG...TGAGCTTGCTCTTGGAACTCCATCTCTTCTTCCTTCCCTCGGCTTACCCAGGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| CDS-3UTR CCA 90 bp | AGCCTGGGTAAGCCGAGGGAAGGAAGAAGAGATGGAGTTCCAAGAGCAAGCTCATCCAGGATCTCCACCTaGTCCTCCGTGGGGCCGCTC | + |
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Preference number: 4 (lower is better) Translates to: SLGKPREGRRDGVPRASSSRIST*SSVGPL Trigger: GAGCGGCCCCACGGAGGACCAGGTGGAGATCCTGGA...TGAGCTTGCTCTTGGAACTCCATCTCTTCTTCCTTCCCTCGGCTTACCCAGGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| CDS-3UTR TCA 90 bp | CATATGAATTACTACTGGAAGGTGATGGCCAAGGGCAAACGAAGACGGTTCCCACCGCCTCGGCTGCGATaGGGCACAGCGTGGTGGGGT | + |
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Preference number: 4 (lower is better) Translates to: HMNYYWKVMAKGKRRRFPPPRLR*GTAWWG Trigger: ACCCCACCACGCTGTGCCTCATCGCAGCCGAGGCGG...TGGGAACCGTCTTCGTTTGCCCTTGGCCATCACCTTCCAGTAGTAATTCATATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| CDS-3UTR GCA 90 bp | CGTTCTCATTCAACCACCAGTGTGTTTAGTGAAGCAGAAGGAGGGAGCACAGGGGAGACCCGCCTCGGCTaGGATGAGGCACAGCGTGGT | + |
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Preference number: 4 (lower is better) Translates to: RSHSTTSVFSEAEGGSTGETRLG*DEAQRG Trigger: ACCACGCTGTGCCTCATCGCAGCCGAGGCGGGTCTC...CCCTGTGCTCCCTCCTTCTGCTTCACTAAACACACTGGTGGTTGAATGAGAACG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| CDS-3UTR TCA 90 bp | CAAATACACCCACGTTCTCATTCAACCACCAGTGTGTTTAGTGAAGCAGAAGGACCGCCTCGGCTGCGATaGGGCACAGCGTGGTGGGGT | + |
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Preference number: 4 (lower is better) Translates to: QIHPRSHSTTSVFSEAEGPPRLR*GTAWWG Trigger: ACCCCACCACGCTGTGCCTCATCGCAGCCGAGGCGG...TCCTTCTGCTTCACTAAACACACTGGTGGTTGAATGAGAACGTGGGTGTATTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| CDS-3UTR GCA 90 bp | CCGAGGGAAGGAAGAAGAGATGGAGTTCCAAGAGCAAGCTCAAGGGCCTGGCTCCACTCTGCCAGGCGCTaGTTAAACCATTTCTGCGTC | + |
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Preference number: 4 (lower is better) Translates to: PREGRRDGVPRASSRAWLHSARR*LNHFCV Trigger: GACGCAGAAATGGTTTAAGCAGCGCCTGGCAGAGTG...GAGCCAGGCCCTTGAGCTTGCTCTTGGAACTCCATCTCTTCTTCCTTCCCTCGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| CDS-3UTR GCA 90 bp | GAACTCAGGAGGTGTTCCCCTGCCTGTTCTGTTATCTTTTCAATAGAAGCCAGGGTGGTGGGGTCCGGGTaGTTGTTGACCTTGTTGAAG | + |
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Preference number: 4 (lower is better) Translates to: ELRRCSPACSVIFSIEARVVGSG*LLTLLK Trigger: CTTCAACAAGGTCAACAAGCACCCGGACCCCACCAC...CCTGGCTTCTATTGAAAAGATAACAGAACAGGCAGGGGAACACCTCCTGAGTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| CDS-3UTR GCA 90 bp | CCATATGAATTACTACTGGAAGGTGATGGCCAAGGGCAAACGAAGACGGTTCCCCACTCTGCCAGGCGCTaGTTAAACCATTTCTGCGTC | + |
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Preference number: 4 (lower is better) Translates to: PYELLLEGDGQGQTKTVPHSARR*LNHFCV Trigger: GACGCAGAAATGGTTTAAGCAGCGCCTGGCAGAGTG...GGGAACCGTCTTCGTTTGCCCTTGGCCATCACCTTCCAGTAGTAATTCATATGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| CDS-3UTR GCA 90 bp | AAGGTGATGGCCAAGGGCAAACGAAGACGGTTCCCACATCATCTTTCATTAAAAGTGGTGGGGTCCGGGTaGTTGTTGACCTTGTTGAAG | + |
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Preference number: 4 (lower is better) Translates to: KVMAKGKRRRFPHHLSLKVVGSG*LLTLLK Trigger: CTTCAACAAGGTCAACAAGCACCCGGACCCCACCAC...TTTTAATGAAAGATGATGTGGGAACCGTCTTCGTTTGCCCTTGGCCATCACCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| CDS-3UTR GCA 90 bp | CAAGCCATCACTTTACACAGAACTGCATTTAGCTCCCTGTTATTTTGGATTTTTGAGACCCGCCTCGGCTaGGATGAGGCACAGCGTGGT | + |
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Preference number: 4 (lower is better) Translates to: QAITLHRTAFSSLLFWIFETRLG*DEAQRG Trigger: ACCACGCTGTGCCTCATCGCAGCCGAGGCGGGTCTC...AAAAATCCAAAATAACAGGGAGCTAAATGCAGTTCTGTGTAAAGTGATGGCTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| CDS-3UTR GCA 90 bp | CTTAGCTACTTGCTTTTCTGCCCCTTGGAATCCATAGCTGCTATACTAGGTTGCCACTCTGCCAGGCGCTaGTTAAACCATTTCTGCGTC | + |
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Preference number: 4 (lower is better) Translates to: LSYLLFCPLESIAAILGCHSARR*LNHFCV Trigger: GACGCAGAAATGGTTTAAGCAGCGCCTGGCAGAGTG...GCAACCTAGTATAGCAGCTATGGATTCCAAGGGGCAGAAAAGCAAGTAGCTAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| CDS-3UTR GCA 90 bp | CAAGCCATCACTTTACACAGAACTGCATTTAGCTCCCTGTTATTTTGGATTTTTGTGGTGGGGTCCGGGTaGTTGTTGACCTTGTTGAAG | + |
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Preference number: 4 (lower is better) Translates to: QAITLHRTAFSSLLFWIFVVGSG*LLTLLK Trigger: CTTCAACAAGGTCAACAAGCACCCGGACCCCACCAC...AAAAATCCAAAATAACAGGGAGCTAAATGCAGTTCTGTGTAAAGTGATGGCTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| CDS GCA 90 bp | CATTCCGAAGGCAAGCCTTCTGACCGCCGCCACTCTGCCAGGCGCTaGTTAAACCATTTCTGCGTCTGCTCCTCCGTGAGACCCGCCTCG | + |
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Preference number: 5 (lower is better) Translates to: HSEGKPSDRRHSARR*LNHFCVCSSVRPAS Trigger: CGAGGCGGGTCTCACGGAGGAGCAGACGCAGAAATGGTTTAAGCAGCGCCTGGCAGAGTGGCGGCGGTCAGAAGGCTTGCCTTCGGAATG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| CDS GCA 90 bp | AGACCCGCCTCGGCTGCGATGAGGCACAGCGTGGTGGGGTCCGGGTaGTTGTTGACCTTGTTGAAGTTGTACTCCAGGATCTCCACCTGG | + |
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Preference number: 5 (lower is better) Translates to: RPASAAMRHSVVGSG*LLTLLKLYSRISTW Trigger: CCAGGTGGAGATCCTGGAGTACAACTTCAACAAGGTCAACAAGCACCCGGACCCCACCACGCTGTGCCTCATCGCAGCCGAGGCGGGTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| CDS GCA 90 bp | CTTAAACCATTTCTGCGTCTGCTCCTCCGTGAGACCCGCCTCGGCTaGGATGAGGCACAGCGTGGTGGGGTCCGGGTGCTTGTTGACCTT | + |
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Preference number: 5 (lower is better) Translates to: LKPFLRLLLRETRLG*DEAQRGGVRVLVDL Trigger: AAGGTCAACAAGCACCCGGACCCCACCACGCTGTGCCTCATCGCAGCCGAGGCGGGTCTCACGGAGGAGCAGACGCAGAAATGGTTTAAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| CDS-3UTR CAA 90 bp | CCGAGGGAAGGAAGAAGAGATGGAGTTCCAAGAGCAAGCTCAAGGGCCTGGCTCGTGGGGTCCGGGTGCTaGTTGACCTTGTTGAAGTTG | + |
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Preference number: 5 (lower is better) Translates to: PREGRRDGVPRASSRAWLVGSGC*LTLLKL Trigger: CAACTTCAACAAGGTCAACAAGCACCCGGACCCCAC...GAGCCAGGCCCTTGAGCTTGCTCTTGGAACTCCATCTCTTCTTCCTTCCCTCGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| CDS-3UTR CAA 90 bp | AGAAGGAGGGAGCACAGGGAAGTGAACTCAGGAGGTGTTCCCCTGCCTGTTCTGTGCTTGTTGACCTTGTaGAAGTTGTACTCCAGGATC | + |
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Preference number: 5 (lower is better) Translates to: RRREHREVNSGGVPLPVLCLLTL*KLYSRI Trigger: GATCCTGGAGTACAACTTCAACAAGGTCAACAAGCA...CAGAACAGGCAGGGGAACACCTCCTGAGTTCACTTCCCTGTGCTCCCTCCTTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| CDS-3UTR CAA 90 bp | GAACTCAGGAGGTGTTCCCCTGCCTGTTCTGTTATCTTTTCAATAGAAGCCAGGGTGGGGTCCGGGTGCTaGTTGACCTTGTTGAAGTTG | + |
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Preference number: 5 (lower is better) Translates to: ELRRCSPACSVIFSIEARVGSGC*LTLLKL Trigger: CAACTTCAACAAGGTCAACAAGCACCCGGACCCCAC...CCTGGCTTCTATTGAAAAGATAACAGAACAGGCAGGGGAACACCTCCTGAGTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| CDS-3UTR CAA 90 bp | CATATGAATTACTACTGGAAGGTGATGGCCAAGGGCAAACGAAGACGGTTCCCAGTGGGGTCCGGGTGCTaGTTGACCTTGTTGAAGTTG | + |
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Preference number: 5 (lower is better) Translates to: HMNYYWKVMAKGKRRRFPVGSGC*LTLLKL Trigger: CAACTTCAACAAGGTCAACAAGCACCCGGACCCCAC...TGGGAACCGTCTTCGTTTGCCCTTGGCCATCACCTTCCAGTAGTAATTCATATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| CDS-3UTR CAA 90 bp | CATATGAATTACTACTGGAAGGTGATGGCCAAGGGCAAACGAAGACGGTTCCCAGGGTGCTTGTTGACCTaGTTGAAGTTGTACTCCAGG | + |
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Preference number: 5 (lower is better) Translates to: HMNYYWKVMAKGKRRRFPGCLLT*LKLYSR Trigger: CCTGGAGTACAACTTCAACAAGGTCAACAAGCACCC...TGGGAACCGTCTTCGTTTGCCCTTGGCCATCACCTTCCAGTAGTAATTCATATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| CDS-3UTR CAA 90 bp | GGCCAAGGGCAAACGAAGACGGTTCCCACATCATCTTTCATTAAAATCCAAAGGGGGTGCTTGTTGACCTaGTTGAAGTTGTACTCCAGG | + |
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Preference number: 5 (lower is better) Translates to: GQGQTKTVPTSSFIKIQRGCLLT*LKLYSR Trigger: CCTGGAGTACAACTTCAACAAGGTCAACAAGCACCC...CCTTTGGATTTTAATGAAAGATGATGTGGGAACCGTCTTCGTTTGCCCTTGGCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| CDS-3UTR CAA 90 bp | CTACTTGCTTTTCTGCCCCTTGGAATCCATAGCTGCTATACTAGGTTGCTTTCCTTGACCTTGTTGAAGTaGTACTCCAGGATCTCCACC | + |
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Preference number: 5 (lower is better) Translates to: LLAFLPLGIHSCYTRLLSLTLLK*YSRIST Trigger: GGTGGAGATCCTGGAGTACAACTTCAACAAGGTCAA...GGAAAGCAACCTAGTATAGCAGCTATGGATTCCAAGGGGCAGAAAAGCAAGTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| CDS-3UTR CAA 90 bp | GGTCCATATGAATTACTACTGGAAGGTGATGGCCAAGGGCAAACGAAGACGGTTTGCTTGTTGACCTTGTaGAAGTTGTACTCCAGGATC | + |
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Preference number: 5 (lower is better) Translates to: GPYELLLEGDGQGQTKTVCLLTL*KLYSRI Trigger: GATCCTGGAGTACAACTTCAACAAGGTCAACAAGCA...AACCGTCTTCGTTTGCCCTTGGCCATCACCTTCCAGTAGTAATTCATATGGACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| CDS-3UTR CAA 90 bp | AACAATGAGACATTCAACACTGCACTGAAACATCAAAACAGCCTGGGTAAGCCGTTGACCTTGTTGAAGTaGTACTCCAGGATCTCCACC | + |
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Preference number: 5 (lower is better) Translates to: NNETFNTALKHQNSLGKPLTLLK*YSRIST Trigger: GGTGGAGATCCTGGAGTACAACTTCAACAAGGTCAA...CGGCTTACCCAGGCTGTTTTGATGTTTCAGTGCAGTGTTGAATGTCTCATTGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| CDS-3UTR CAA 90 bp | GGCCAAGGGCAAACGAAGACGGTTCCCACATCATCTTTCATTAAAATCCAAAGGTGCTTGTTGACCTTGTaGAAGTTGTACTCCAGGATC | + |
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Preference number: 5 (lower is better) Translates to: GQGQTKTVPTSSFIKIQRCLLTL*KLYSRI Trigger: GATCCTGGAGTACAACTTCAACAAGGTCAACAAGCA...CCTTTGGATTTTAATGAAAGATGATGTGGGAACCGTCTTCGTTTGCCCTTGGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| CDS GCA 72 bp | TTTCTGCGTCTGCTCCTCCGTGAGACCCGCCTCGGCTaGGATGAGGCACAGCGTGGTGGGGTCCGGGTGCTT | + |
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Preference number: 6 (lower is better) Translates to: FLRLLLRETRLG*DEAQRGGVRVL Trigger: AAGCACCCGGACCCCACCACGCTGTGCCTCATCGCAGCCGAGGCGGGTCTCACGGAGGAGCAGACGCAGAAA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| CDS CAA 90 bp | AGGCACAGCGTGGTGGGGTCCGGGTGCTTGTTGACCTTGTTGAAGTaGTACTCCAGGATCTCCACCTGGTCCTCCGTGGGGCCGCTCGCG | + |
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Preference number: 6 (lower is better) Translates to: RHSVVGSGCLLTLLK*YSRISTWSSVGPLA Trigger: CGCGAGCGGCCCCACGGAGGACCAGGTGGAGATCCTGGAGTACAACTTCAACAAGGTCAACAAGCACCCGGACCCCACCACGCTGTGCCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| CDS GCA 72 bp | CACTCTGCCAGGCGCTGCTTAAACCATTTCTGCGTCTaGTCCTCCGTGAGACCCGCCTCGGCTGCGATGAGG | + |
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Preference number: 6 (lower is better) Translates to: HSARRCLNHFCV*SSVRPASAAMR Trigger: CCTCATCGCAGCCGAGGCGGGTCTCACGGAGGAGCAGACGCAGAAATGGTTTAAGCAGCGCCTGGCAGAGTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| CDS CAA 90 bp | GCTGCGATGAGGCACAGCGTGGTGGGGTCCGGGTGCTTGTTGACCTaGTTGAAGTTGTACTCCAGGATCTCCACCTGGTCCTCCGTGGGG | + |
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Preference number: 6 (lower is better) Translates to: AAMRHSVVGSGCLLT*LKLYSRISTWSSVG Trigger: CCCCACGGAGGACCAGGTGGAGATCCTGGAGTACAACTTCAACAAGGTCAACAAGCACCCGGACCCCACCACGCTGTGCCTCATCGCAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| CDS CAA 90 bp | GCCTCGGCTGCGATGAGGCACAGCGTGGTGGGGTCCGGGTGCTTGTaGACCTTGTTGAAGTTGTACTCCAGGATCTCCACCTGGTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: ASAAMRHSVVGSGCL*TLLKLYSRISTWSS Trigger: GGAGGACCAGGTGGAGATCCTGGAGTACAACTTCAACAAGGTCAACAAGCACCCGGACCCCACCACGCTGTGCCTCATCGCAGCCGAGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| CDS GCA 72 bp | GGCAAGCCTTCTGACCGCCGCCACTCTGCCAGGCGCTaGTTAAACCATTTCTGCGTCTGCTCCTCCGTGAGA | + |
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Preference number: 6 (lower is better) Translates to: GKPSDRRHSARR*LNHFCVCSSVR Trigger: TCTCACGGAGGAGCAGACGCAGAAATGGTTTAAGCAGCGCCTGGCAGAGTGGCGGCGGTCAGAAGGCTTGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| CDS GCA 72 bp | TCGGCTGCGATGAGGCACAGCGTGGTGGGGTCCGGGTaGTTGTTGACCTTGTTGAAGTTGTACTCCAGGATC | + |
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Preference number: 6 (lower is better) Translates to: SAAMRHSVVGSG*LLTLLKLYSRI Trigger: GATCCTGGAGTACAACTTCAACAAGGTCAACAAGCACCCGGACCCCACCACGCTGTGCCTCATCGCAGCCGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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| CDS CAA 72 bp | AGGCACAGCGTGGTGGGGTCCGGGTGCTTGTTGACCTaGTTGAAGTTGTACTCCAGGATCTCCACCTGGTCC | + |
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Preference number: 6 (lower is better) Translates to: RHSVVGSGCLLT*LKLYSRISTWS Trigger: GGACCAGGTGGAGATCCTGGAGTACAACTTCAACAAGGTCAACAAGCACCCGGACCCCACCACGCTGTGCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000081964.7 ENSMUST00000113453.9 ENSMUST00000120827.9 |
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