Pregenerated sensors for HOATZ (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032057Ensembl transcript IDs: ENSMUST00000170947.3
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | ATACATTGTGGAAACACCTTTCAAGTCAAACAAAAACCAGGAGTTTGGGATGATGGGGAGCAGATTTCCTaGGATTCCTTCCTGCCGCTA | + |
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Preference number: 4 (lower is better) Translates to: IHCGNTFQVKQKPGVWDDGEQIS*DSFLPL Trigger: TAGCGGCAGGAAGGAATCCCAGGAAATCTGCTCCCC...ATCATCCCAAACTCCTGGTTTTTGTTTGACTTGAAAGGTGTTTCCACAATGTAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000170947.3 |
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| CDS-3UTR TCA 90 bp | TGTGGAAACACCTTTCAAGTCAAACAAAAACCAGGAGTTTGGGATGATTATGATATTGCATCCTTGTCCTaGTCAAAGGGAAAGGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: CGNTFQVKQKPGVWDDYDIASLS*SKGKGW Trigger: CCAGCCCTTTCCCTTTGATCAGGACAAGGATGCAAT...ATCATAATCATCCCAAACTCCTGGTTTTTGTTTGACTTGAAAGGTGTTTCCACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170947.3 |
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| CDS-3UTR GCA 90 bp | ACTGATCCTGCTGTAAGCATAACTTGCTGTAAGGGTGAACACATATCAGTCAGTCTTTTGGAGATACTTTaGTCTCTCTTCAGATTCCTG | + |
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Preference number: 4 (lower is better) Translates to: TDPAVSITCCKGEHISVSLLEIL*SLFRFL Trigger: CAGGAATCTGAAGAGAGAGCAAAGTATCTCCAAAAG...ACTGACTGATATGTGTTCACCCTTACAGCAAGTTATGCTTACAGCAGGATCAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170947.3 |
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| CDS-3UTR TCA 90 bp | ATACATTGTGGAAACACCTTTCAAGTCAAACAAAAACCAGGAGTTTGGGATGATCTCTCTTCAGATTCCTaGATCCTTTGGGCTTTAGCA | + |
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Preference number: 4 (lower is better) Translates to: IHCGNTFQVKQKPGVWDDLSSDS*ILWALA Trigger: TGCTAAAGCCCAAAGGATTCAGGAATCTGAAGAGAG...ATCATCCCAAACTCCTGGTTTTTGTTTGACTTGAAAGGTGTTTCCACAATGTAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170947.3 |
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| CDS-3UTR CCA 90 bp | ATATACATTGTGGAAACACCTTTCAAGTCAAACAAAAACCAGGAGTTTGGGATGTCAAAGGGAAAGGGCTaGACAGAACTTTTCTCTCTC | + |
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Preference number: 4 (lower is better) Translates to: IYIVETPFKSNKNQEFGMSKGKG*TELFSL Trigger: GAGAGAGAAAAGTTCTGTCCAGCCCTTTCCCTTTGA...CATCCCAAACTCCTGGTTTTTGTTTGACTTGAAAGGTGTTTCCACAATGTATAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000170947.3 |
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| CDS-3UTR CCA 90 bp | TGTGGAAACACCTTTCAAGTCAAACAAAAACCAGGAGTTTGGGATGATTATGATCGCGTTTTGGCCTTTTaGAGATACTTTGCTCTCTCT | + |
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Preference number: 4 (lower is better) Translates to: CGNTFQVKQKPGVWDDYDRVLAF*RYFALS Trigger: AGAGAGAGCAAAGTATCTCCAAAAGGCCAAAACGCG...ATCATAATCATCCCAAACTCCTGGTTTTTGTTTGACTTGAAAGGTGTTTCCACA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000170947.3 |
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| CDS-3UTR CCA 90 bp | CAAGTCAAACAAAAACCAGGAGTTTGGGATGATTATGATGCGAAAATGATTATGTGTTTCCTTAAAAGTTaGAGAATCTCATCTCGCGTT | + |
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Preference number: 4 (lower is better) Translates to: QVKQKPGVWDDYDAKMIMCFLKS*RISSRV Trigger: AACGCGAGATGAGATTCTCCAACTTTTAAGGAAACA...CATAATCATTTTCGCATCATAATCATCCCAAACTCCTGGTTTTTGTTTGACTTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000170947.3 |
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| CDS CCA 90 bp | TCAGAGCAGCCGGTGAACACCAGTAATCCAGGGGAGCAGATTTCCTaGGATTCCTTCCTGCCGCTAGGACAGCCTCTGGGCCCCGTTTCC | + |
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Preference number: 5 (lower is better) Translates to: SEQPVNTSNPGEQIS*DSFLPLGQPLGPVS Trigger: GGAAACGGGGCCCAGAGGCTGTCCTAGCGGCAGGAAGGAATCCCAGGAAATCTGCTCCCCTGGATTACTGGTGTTCACCGGCTGCTCTGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170947.3 |
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| CDS-3UTR CAA 90 bp | ATATACATTGTGGAAACACCTTTCAAGTCAAACAAAAACCAGGAGTTTGGGATGAACTGCTTAGCCAAATaGGCATCCTGCTCAGAGCAG | + |
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Preference number: 5 (lower is better) Translates to: IYIVETPFKSNKNQEFGMNCLAK*ASCSEQ Trigger: CTGCTCTGAGCAGGATGCCAATTTGGCTAAGCAGTT...CATCCCAAACTCCTGGTTTTTGTTTGACTTGAAAGGTGTTTCCACAATGTATAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170947.3 |
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| CDS-3UTR CAA 90 bp | TGTGGAAACACCTTTCAAGTCAAACAAAAACCAGGAGTTTGGGATGATTATGATTCGCGTTTTGGCCTTTaGGAGATACTTTGCTCTCTC | + |
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Preference number: 5 (lower is better) Translates to: CGNTFQVKQKPGVWDDYDSRFGL*EILCSL Trigger: GAGAGAGCAAAGTATCTCCAAAAGGCCAAAACGCGA...ATCATAATCATCCCAAACTCCTGGTTTTTGTTTGACTTGAAAGGTGTTTCCACA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000170947.3 |
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| CDS-3UTR CAA 90 bp | ATACATTGTGGAAACACCTTTCAAGTCAAACAAAAACCAGGAGTTTGGGATGATCTGATAAAACTTCCTTaGATTTGGGCACTTTGTCCT | + |
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Preference number: 5 (lower is better) Translates to: IHCGNTFQVKQKPGVWDDLIKLP*IWALCP Trigger: AGGACAAAGTGCCCAAATCAAAGGAAGTTTTATCAG...ATCATCCCAAACTCCTGGTTTTTGTTTGACTTGAAAGGTGTTTCCACAATGTAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000170947.3 |
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| CDS-3UTR CAA 90 bp | TGTGGAAACACCTTTCAAGTCAAACAAAAACCAGGAGTTTGGGATGATTATGATAGATTCCTGAATCCTTaGGGCTTTAGCAAAGATAAT | + |
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Preference number: 5 (lower is better) Translates to: CGNTFQVKQKPGVWDDYDRFLNP*GFSKDN Trigger: ATTATCTTTGCTAAAGCCCAAAGGATTCAGGAATCT...ATCATAATCATCCCAAACTCCTGGTTTTTGTTTGACTTGAAAGGTGTTTCCACA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170947.3 |
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| CDS GCA 72 bp | GCCCCGAGCCAAAACTGCTTAGCCAAATTGGCATCCTaGTCAGAGCAGCCGGTGAACACCAGTAATCCAGGG | + |
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Preference number: 6 (lower is better) Translates to: APSQNCLAKLAS*SEQPVNTSNPG Trigger: CCCTGGATTACTGGTGTTCACCGGCTGCTCTGAGCAGGATGCCAATTTGGCTAAGCAGTTTTGGCTCGGGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170947.3 |
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| CDS GCA 72 bp | AGATTCCTGAATCCTTTGGGCTTTAGCAAAGATAATTaGATCCTTGTCCTGATCAAAGGGAAAGGGCTGGAC | + |
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Preference number: 6 (lower is better) Translates to: RFLNPLGFSKDN*ILVLIKGKGLD Trigger: GTCCAGCCCTTTCCCTTTGATCAGGACAAGGATGCAATTATCTTTGCTAAAGCCCAAAGGATTCAGGAATCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170947.3 |
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| CDS CAA 72 bp | GAATCTCATCTCGCGTTTTGGCCTTTTGGAGATACTTaGCTCTCTCTTCAGATTCCTGAATCCTTTGGGCTT | + |
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Preference number: 6 (lower is better) Translates to: ESHLAFWPFGDT*LSLQIPESFGL Trigger: AAGCCCAAAGGATTCAGGAATCTGAAGAGAGAGCAAAGTATCTCCAAAAGGCCAAAACGCGAGATGAGATTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170947.3 |
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| CDS TCA 72 bp | CTTTGGGCTTTAGCAAAGATAATTGCATCCTTGTCCTaGTCAAAGGGAAAGGGCTGGACAGAACTTTTCTCT | + |
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Preference number: 6 (lower is better) Translates to: LWALAKIIASLS*SKGKGWTELFS Trigger: AGAGAAAAGTTCTGTCCAGCCCTTTCCCTTTGATCAGGACAAGGATGCAATTATCTTTGCTAAAGCCCAAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170947.3 |
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| CDS GCA 72 bp | AATCTCATCTCGCGTTTTGGCCTTTTGGAGATACTTTaGTCTCTCTTCAGATTCCTGAATCCTTTGGGCTTT | + |
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Preference number: 6 (lower is better) Translates to: NLISRFGLLEIL*SLFRFLNPLGF Trigger: AAAGCCCAAAGGATTCAGGAATCTGAAGAGAGAGCAAAGTATCTCCAAAAGGCCAAAACGCGAGATGAGATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170947.3 |
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