RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HNRNPUL1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000040725

Ensembl transcript IDs: ENSMUST00000043765.14, ENSMUST00000108401.3, ENSMUST00000206832.2

Found 247 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ACATTGCAGGTCTGGCACCTGGAAGAGCAATGGAGGTGGAGGTGGTaGTGGAGGTGGAGGTGGTGGTGGTGGTGGTGGTGGAGGAACTTT +
Preference number: 1 (lower is better)
Translates to: TLQVWHLEEQWRWRW*WRWRWWWWWWWRNF
Trigger: AAAGTTCCTCCACCACCACCACCACCACCACCTCCACCTCCACCACCACCTCCACCTCCATTGCTCTTCCAGGTGCCAGACCTGCAATGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206832.2
3UTR CCA 90 bp AAAACATTGCAGGTCTGGCACCTGGAAGAGCAATGGAGGTGGAGGTaGTGGTGGAGGTGGAGGTGGTGGTGGTGGTGGTGGTGGAGGAAC +
Preference number: 1 (lower is better)
Translates to: KTLQVWHLEEQWRWR*WWRWRWWWWWWWRN
Trigger: GTTCCTCCACCACCACCACCACCACCACCTCCACCTCCACCACCACCTCCACCTCCATTGCTCTTCCAGGTGCCAGACCTGCAATGTTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206832.2
3UTR CCA 90 bp AAGGACCACTGTAAAACATTGCAGGTCTGGCACCTGGAAGAGCAATaGAGGTGGAGGTGGTGGTGGAGGTGGAGGTGGTGGTGGTGGTGG +
Preference number: 1 (lower is better)
Translates to: KDHCKTLQVWHLEEQ*RWRWWWRWRWWWWW
Trigger: CCACCACCACCACCACCTCCACCTCCACCACCACCTCCACCTCCATTGCTCTTCCAGGTGCCAGACCTGCAATGTTTTACAGTGGTCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206832.2
3UTR CCA 90 bp AGAGTAATCAAAAGGACCACTGTAAAACATTGCAGGTCTGGCACCTaGAAGAGCAATGGAGGTGGAGGTGGTGGTGGAGGTGGAGGTGGT +
Preference number: 1 (lower is better)
Translates to: RVIKRTTVKHCRSGT*KSNGGGGGGGGGGG
Trigger: ACCACCTCCACCTCCACCACCACCTCCACCTCCATTGCTCTTCCAGGTGCCAGACCTGCAATGTTTTACAGTGGTCCTTTTGATTACTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206832.2
3UTR TCA 90 bp AATAGTCACACTCTCTCCAAGTACAAAAAGCAGTTACAATCCAACTaGACAGACGCTTGTGTGCAAAGTTACGGGGAACTGAGACATCAT +
Preference number: 1 (lower is better)
Translates to: NSHTLSKYKKQLQSN*TDACVQSYGELRHH
Trigger: ATGATGTCTCAGTTCCCCGTAACTTTGCACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGAGAGTGTGACTATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
3UTR-3UTR CCA 90 bp TGGCACCTGGAAGAGCAATGGAGGTGGAGGTGGTGGTGGAGGTGGAGGTGGTGGGGTCTAAAGGGAAGCTaGCCCCACCCCCACCTTCCC +
Preference number: 2 (lower is better)
Translates to: WHLEEQWRWRWWWRWRWWGLKGS*PHPHLP
Trigger: GGGAAGGTGGGGGTGGGGCCAGCTTCCCTTTAGACC...CCACCACCTCCACCTCCACCACCACCTCCACCTCCATTGCTCTTCCAGGTGCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000206832.2
3UTR-3UTR CCA 90 bp CTTCACCCTCTCACCCGCTTATGCCCACCAGAAACTACCACGACTCCTGGAGTACCTCCCCAGTCACTGTaGCCTCACAAGGGAGGCTTC +
Preference number: 2 (lower is better)
Translates to: LHPLTRLCPPETTTTPGVPPQSL*PHKGGF
Trigger: GAAGCCTCCCTTGTGAGGCCACAGTGACTGGGGAGG...TACTCCAGGAGTCGTGGTAGTTTCTGGTGGGCATAAGCGGGTGAGAGGGTGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206832.2
3UTR-3UTR TCA 90 bp TGGCACCTGGAAGAGCAATGGAGGTGGAGGTGGTGGTGGAGGTGGAGGTGGTGGCAGTTACAATCCAACTaGACAGACGCTTGTGTGCAA +
Preference number: 2 (lower is better)
Translates to: WHLEEQWRWRWWWRWRWWQLQSN*TDACVQ
Trigger: TTGCACACAAGCGTCTGTTCAGTTGGATTGTAACTG...CCACCACCTCCACCTCCACCACCACCTCCACCTCCATTGCTCTTCCAGGTGCCA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206832.2
3UTR-3UTR CCA 90 bp CTTCACCCTCTCACCCGCTTATGCCCACCAGAAACTACCACGACTCCTGGAGTACTCCTCTGGAAAAAGTaGGCTAGAGAGAGGCAGCCC +
Preference number: 2 (lower is better)
Translates to: LHPLTRLCPPETTTTPGVLLWKK*ARERQP
Trigger: GGGCTGCCTCTCTCTAGCCCACTTTTTCCAGAGGAG...TACTCCAGGAGTCGTGGTAGTTTCTGGTGGGCATAAGCGGGTGAGAGGGTGAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000206832.2
3UTR-3UTR TCA 90 bp AGTCACTGTGGCCTCACAAGGGAGGCTTCTTTAGCTAAGAAGGCAGGGGAGGAGAATGCCTGGCCTGTATaGAGAGAGAAGCTCCTCTGG +
Preference number: 2 (lower is better)
Translates to: SHCGLTREASLAKKAGEENAWPV*REKLLW
Trigger: CCAGAGGAGCTTCTCTCTTCATACAGGCCAGGCATT...CTCCTCCCCTGCCTTCTTAGCTAAAGAAGCCTCCCTTGTGAGGCCACAGTGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
3UTR-3UTR CCA 90 bp CCTTCCCTTCACCCTCTCACCCGCTTATGCCCACCAGAAACTACCACGACTCCTAGAGAGAAGCTCCTCTaGAAAAAGTGGGCTAGAGAG +
Preference number: 2 (lower is better)
Translates to: PSLHPLTRLCPPETTTTPREKLL*KKWARE
Trigger: CTCTCTAGCCCACTTTTTCCAGAGGAGCTTCTCTCT...AGGAGTCGTGGTAGTTTCTGGTGGGCATAAGCGGGTGAGAGGGTGAAGGGAAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000206832.2
3UTR-3UTR CCA 90 bp TGGCACCTGGAAGAGCAATGGAGGTGGAGGTGGTGGTGGAGGTGGAGGTGGTGGAACTACCACGACTCCTaGAGTAAAAGGTTTCAAGTT +
Preference number: 2 (lower is better)
Translates to: WHLEEQWRWRWWWRWRWWNYHDS*SKRFQV
Trigger: AACTTGAAACCTTTTACTCCAGGAGTCGTGGTAGTT...CCACCACCTCCACCTCCACCACCACCTCCACCTCCATTGCTCTTCCAGGTGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206832.2
3UTR-3UTR GCA 90 bp AGTCACTGTGGCCTCACAAGGGAGGCTTCTTTAGCTAAGAAGGCAGGGGAGGAGATCCAGAGAGGAAAATaGCTGGCCTGTATGAAGAGA +
Preference number: 2 (lower is better)
Translates to: SHCGLTREASLAKKAGEEIQRGK*LACMKR
Trigger: TCTCTTCATACAGGCCAGGCATTTTCCTCTCTGGAT...CTCCTCCCCTGCCTTCTTAGCTAAAGAAGCCTCCCTTGTGAGGCCACAGTGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
3UTR-3UTR CCA 90 bp TCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACAGACGCTTGTGTGCAAACCTCCCCAGTCACTGTaGCCTCACAAGGGAGGCTTC +
Preference number: 2 (lower is better)
Translates to: SPSTKSSYNPTEQTLVCKPPQSL*PHKGGF
Trigger: GAAGCCTCCCTTGTGAGGCCACAGTGACTGGGGAGG...TTTGCACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
3UTR-3UTR TCA 90 bp CACTCTCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACAGACGCTTGTGTAATGCCTGGCCTGTATaGAGAGAGAAGCTCCTCTGG +
Preference number: 2 (lower is better)
Translates to: HSLQVQKAVTIQLNRRLCNAWPV*REKLLW
Trigger: CCAGAGGAGCTTCTCTCTTCATACAGGCCAGGCATT...ACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGAGAGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
3UTR-3UTR CCA 90 bp GTTAAAGGTGATTTTGTTGTTTCGAGGGTGTGGCTCTTCCTCGGTTACCTGAACCTCACTGTTGCCTGTTaGAATCCAGAGAGGAAAATG +
Preference number: 2 (lower is better)
Translates to: VKGDFVVSRVWLFLGYLNLTVAC*NPERKM
Trigger: CATTTTCCTCTCTGGATTCCAACAGGCAACAGTGAG...GTTCAGGTAACCGAGGAAGAGCCACACCCTCGAAACAACAAAATCACCTTTAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
3UTR-3UTR CCA 90 bp AGTTCAATAGTCACACTCTCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACTCCTCTGGAAAAAGTaGGCTAGAGAGAGGCAGCCC +
Preference number: 2 (lower is better)
Translates to: SSIVTLSPSTKSSYNPTELLWKK*ARERQP
Trigger: GGGCTGCCTCTCTCTAGCCCACTTTTTCCAGAGGAG...TTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGAGAGTGTGACTATTGAACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
3UTR-3UTR CCA 90 bp AACAGACGCTTGTGTGCAAAGTTACGGGGAACTGAGACATCATATAAAAAGTTACTCACTGTTGCCTGTTaGAATCCAGAGAGGAAAATG +
Preference number: 2 (lower is better)
Translates to: NRRLCAKLRGTETSYKKLLTVAC*NPERKM
Trigger: CATTTTCCTCTCTGGATTCCAACAGGCAACAGTGAG...TAACTTTTTATATGATGTCTCAGTTCCCCGTAACTTTGCACACAAGCGTCTGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
3UTR CCA 72 bp TGGCACCTGGAAGAGCAATGGAGGTGGAGGTGGTGGTaGAGGTGGAGGTGGTGGTGGTGGTGGTGGTGGAGG +
Preference number: 3 (lower is better)
Translates to: WHLEEQWRWRWW*RWRWWWWWWWR
Trigger: CCTCCACCACCACCACCACCACCACCTCCACCTCCACCACCACCTCCACCTCCATTGCTCTTCCAGGTGCCA
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206832.2
3UTR CCA 72 bp GTCTGGCACCTGGAAGAGCAATGGAGGTGGAGGTGGTaGTGGAGGTGGAGGTGGTGGTGGTGGTGGTGGTGG +
Preference number: 3 (lower is better)
Translates to: VWHLEEQWRWRW*WRWRWWWWWWW
Trigger: CCACCACCACCACCACCACCACCTCCACCTCCACCACCACCTCCACCTCCATTGCTCTTCCAGGTGCCAGAC
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206832.2
3UTR GCA 72 bp CCACCCCCACCTTCCCTTCACCCTCTCACCCGCTTATaGCCACCAGAAACTACCACGACTCCTGGAGTAAAA +
Preference number: 3 (lower is better)
Translates to: PPPPSLHPLTRL*PPETTTTPGVK
Trigger: TTTTACTCCAGGAGTCGTGGTAGTTTCTGGTGGGCATAAGCGGGTGAGAGGGTGAAGGGAAGGTGGGGGTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000206832.2
3UTR-3UTR CAA 90 bp CCTTCCCTTCACCCTCTCACCCGCTTATGCCCACCAGAAACTACCACGACTCCTCAACTGAACAGACGCTaGTGTGCAAAGTTACGGGGA +
Preference number: 3 (lower is better)
Translates to: PSLHPLTRLCPPETTTTPQLNRR*CAKLRG
Trigger: TCCCCGTAACTTTGCACACAAGCGTCTGTTCAGTTG...AGGAGTCGTGGTAGTTTCTGGTGGGCATAAGCGGGTGAGAGGGTGAAGGGAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206832.2
3UTR-3UTR CAA 90 bp AGTCACTGTGGCCTCACAAGGGAGGCTTCTTTAGCTAAGAAGGCAGGGGAGGAGGCTCACTGTTGCCTGTaGGAATCCAGAGAGGAAAAT +
Preference number: 3 (lower is better)
Translates to: SHCGLTREASLAKKAGEEAHCCL*ESREEN
Trigger: ATTTTCCTCTCTGGATTCCAACAGGCAACAGTGAGC...CTCCTCCCCTGCCTTCTTAGCTAAAGAAGCCTCCCTTGTGAGGCCACAGTGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
3UTR TCA 72 bp ACTCTCTCCAAGTACAAAAAGCAGTTACAATCCAACTaGACAGACGCTTGTGTGCAAAGTTACGGGGAACTG +
Preference number: 3 (lower is better)
Translates to: TLSKYKKQLQSN*TDACVQSYGEL
Trigger: CAGTTCCCCGTAACTTTGCACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGAGAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
3UTR-3UTR CAA 90 bp CACTCTCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACAGACGCTTGTGTAAGAAAAGCTCACTGTaGCCTGTTGGAATCCAGAGA +
Preference number: 3 (lower is better)
Translates to: HSLQVQKAVTIQLNRRLCKKSSL*PVGIQR
Trigger: TCTCTGGATTCCAACAGGCAACAGTGAGCTTTTCTT...ACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGAGAGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
3UTR-3UTR CAA 90 bp TCTCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACAGACGCTTGTGTGCAAGGTTAAAGGTGATTTaGTTGTTTCGAGGGTGTGGC +
Preference number: 3 (lower is better)
Translates to: SLQVQKAVTIQLNRRLCARLKVI*LFRGCG
Trigger: GCCACACCCTCGAAACAACAAAATCACCTTTAACCT...TGCACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
3UTR-3UTR CAA 90 bp CACTCTCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACAGACGCTTGTGTAGGTTAAAGGTGATTTaGTTGTTTCGAGGGTGTGGC +
Preference number: 3 (lower is better)
Translates to: HSLQVQKAVTIQLNRRLCRLKVI*LFRGCG
Trigger: GCCACACCCTCGAAACAACAAAATCACCTTTAACCT...ACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGAGAGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
3UTR-3UTR CAA 90 bp TCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACAGACGCTTGTGTGCAAAAAGAAAAGCTCACTGTaGCCTGTTGGAATCCAGAGA +
Preference number: 3 (lower is better)
Translates to: SPSTKSSYNPTEQTLVCKKKSSL*PVGIQR
Trigger: TCTCTGGATTCCAACAGGCAACAGTGAGCTTTTCTT...TTTGCACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR GCA 90 bp AAGGCAGGTGCTATTAGAAGCAGCCGGCACGAGCCTCTGAAGGCTCCAGCACCGTCCAGGCCGCGGCGCTaGAGCTCCTCGCGAAGTTCG +
Preference number: 4 (lower is better)
Translates to: KAGAIRSSRHEPLKAPAPSRPRR*SSSRSS
Trigger: CGAACTTCGCGAGGAGCTGCAGCGCCGCGGCCTGGA...CGGTGCTGGAGCCTTCAGAGGCTCGTGCCGGCTGCTTCTAATAGCACCTGCCTT
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206832.2
CDS-3UTR CCA 90 bp TGGCACCTGGAAGAGCAATGGAGGTGGAGGTGGTGGTGGAGGTGGAGGTGGTGGTGGCGGAGGTGGAGGTaGTGGGGCTGTGTAGCCCTG +
Preference number: 4 (lower is better)
Translates to: WHLEEQWRWRWWWRWRWWWRRWR*WGCVAL
Trigger: CAGGGCTACACAGCCCCACCACCTCCACCTCCGCCA...CCACCACCTCCACCTCCACCACCACCTCCACCTCCATTGCTCTTCCAGGTGCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206832.2
CDS-3UTR TCA 90 bp TGGCACCTGGAAGAGCAATGGAGGTGGAGGTGGTGGTGGAGGTGGAGGTGGTGGACACACGCCCTCTTCTaGCCCCATAGCTGGCACGGG +
Preference number: 4 (lower is better)
Translates to: WHLEEQWRWRWWWRWRWWTHALF*PHSWHG
Trigger: CCCGTGCCAGCTATGGGGTCAGAAGAGGGCGTGTGT...CCACCACCTCCACCTCCACCACCACCTCCACCTCCATTGCTCTTCCAGGTGCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206832.2
CDS-3UTR GCA 90 bp AAGGCAGGTGCTATTAGAAGCAGCCGGCACGAGCCTCTGAAGGCTCCAGCACCGGGAAGCCTCCTCGGTTaGCTCCAGGAGGGCCTCGGT +
Preference number: 4 (lower is better)
Translates to: KAGAIRSSRHEPLKAPAPGSLLG*LQEGLG
Trigger: ACCGAGGCCCTCCTGGAGGCAACCGAGGAGGCTTCC...CGGTGCTGGAGCCTTCAGAGGCTCGTGCCGGCTGCTTCTAATAGCACCTGCCTT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR GCA 90 bp AAGGCAGGTGCTATTAGAAGCAGCCGGCACGAGCCTCTGAAGGCTCCAGCACCGCCTCACCAGCTTGTCTaGCTCCTCCCGCTGGAGCTC +
Preference number: 4 (lower is better)
Translates to: KAGAIRSSRHEPLKAPAPPHQLV*LLPLEL
Trigger: GAGCTCCAGCGGGAGGAGGCAGACAAGCTGGTGAGG...CGGTGCTGGAGCCTTCAGAGGCTCGTGCCGGCTGCTTCTAATAGCACCTGCCTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR GCA 90 bp CCTTCCCTTCACCCTCTCACCCGCTTATGCCCACCAGAAACTACCACGACTCCTGGAAGCCTCCTCGGTTaGCTCCAGGAGGGCCTCGGT +
Preference number: 4 (lower is better)
Translates to: PSLHPLTRLCPPETTTTPGSLLG*LQEGLG
Trigger: ACCGAGGCCCTCCTGGAGGCAACCGAGGAGGCTTCC...AGGAGTCGTGGTAGTTTCTGGTGGGCATAAGCGGGTGAGAGGGTGAAGGGAAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206832.2
CDS-3UTR GCA 90 bp AAGGCAGGTGCTATTAGAAGCAGCCGGCACGAGCCTCTGAAGGCTCCAGCACCGAACCTCCTCGGTAGTTaGCTCCTCCACCACCGCTGC +
Preference number: 4 (lower is better)
Translates to: KAGAIRSSRHEPLKAPAPNLLGS*LLHHRC
Trigger: GCAGCGGTGGTGGAGGAGGCAACTACCGAGGAGGTT...CGGTGCTGGAGCCTTCAGAGGCTCGTGCCGGCTGCTTCTAATAGCACCTGCCTT
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CCA 90 bp GAAAAAGGGGCCAAGGCAGGTGCTATTAGAAGCAGCCGGCACGAGCCTCTGAAGCGGAGGTGGAGGTGGTaGGGCTGTGTAGCCCTGGGT +
Preference number: 4 (lower is better)
Translates to: EKGAKAGAIRSSRHEPLKRRWRW*GCVALG
Trigger: ACCCAGGGCTACACAGCCCCACCACCTCCACCTCCG...CTTCAGAGGCTCGTGCCGGCTGCTTCTAATAGCACCTGCCTTGGCCCCTTTTTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CCA 90 bp GAAAAAGGGGCCAAGGCAGGTGCTATTAGAAGCAGCCGGCACGAGCCTCTGAAGCCACCTCCCCGGTTCTaGAAGCCTCCTCGGTTGCCT +
Preference number: 4 (lower is better)
Translates to: EKGAKAGAIRSSRHEPLKPPPRF*KPPRLP
Trigger: AGGCAACCGAGGAGGCTTCCAGAACCGGGGAGGTGG...CTTCAGAGGCTCGTGCCGGCTGCTTCTAATAGCACCTGCCTTGGCCCCTTTTTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CCA 90 bp AAGGCAGGTGCTATTAGAAGCAGCCGGCACGAGCCTCTGAAGGCTCCAGCACCGTCTGCCTCCTCCCGCTaGAGCTCAATGAACAGAACC +
Preference number: 4 (lower is better)
Translates to: KAGAIRSSRHEPLKAPAPSASSR*SSMNRT
Trigger: GGTTCTGTTCATTGAGCTCCAGCGGGAGGAGGCAGA...CGGTGCTGGAGCCTTCAGAGGCTCGTGCCGGCTGCTTCTAATAGCACCTGCCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CCA 90 bp TGGCACCTGGAAGAGCAATGGAGGTGGAGGTGGTGGTGGAGGTGGAGGTGGTGGGATACTGGTTATAGCTaGGCTGAGGGTAGGTCTGGG +
Preference number: 4 (lower is better)
Translates to: WHLEEQWRWRWWWRWRWWDTGYS*AEGRSG
Trigger: CCCAGACCTACCCTCAGCCCAGCTATAACCAGTATC...CCACCACCTCCACCTCCACCACCACCTCCACCTCCATTGCTCTTCCAGGTGCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206832.2
CDS-3UTR TCA 90 bp AGTCACTGTGGCCTCACAAGGGAGGCTTCTTTAGCTAAGAAGGCAGGGGAGGAGAGACGGTTGAGGCACTaGGTGGCCTGCTGGATCAGG +
Preference number: 4 (lower is better)
Translates to: SHCGLTREASLAKKAGEERRLRH*VACWIR
Trigger: CCTGATCCAGCAGGCCACTCAGTGCCTCAACCGTCT...CTCCTCCCCTGCCTTCTTAGCTAAAGAAGCCTCCCTTGTGAGGCCACAGTGACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR TCA 90 bp TGGCACCTGGAAGAGCAATGGAGGTGGAGGTGGTGGTGGAGGTGGAGGTGGTGGTTTCCGTCTCTGGGCTaGCCCATAAACATTGGTCTG +
Preference number: 4 (lower is better)
Translates to: WHLEEQWRWRWWWRWRWWFPSLG*PINIGL
Trigger: CAGACCAATGTTTATGGGTCAGCCCAGAGACGGAAA...CCACCACCTCCACCTCCACCACCACCTCCACCTCCATTGCTCTTCCAGGTGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206832.2
CDS-3UTR CCA 90 bp AGTCACTGTGGCCTCACAAGGGAGGCTTCTTTAGCTAAGAAGGCAGGGGAGGAGTGGCTGTTGTGGTGGTaGCTGTTGCTGAGGAGCCCG +
Preference number: 4 (lower is better)
Translates to: SHCGLTREASLAKKAGEEWLLWW*LLLRSP
Trigger: CGGGCTCCTCAGCAACAGCCACCACCACAACAGCCA...CTCCTCCCCTGCCTTCTTAGCTAAAGAAGCCTCCCTTGTGAGGCCACAGTGACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CCA 90 bp AAGGCAGGTGCTATTAGAAGCAGCCGGCACGAGCCTCTGAAGGCTCCAGCACCGGATACTGGTTATAGCTaGGCTGAGGGTAGGTCTGGG +
Preference number: 4 (lower is better)
Translates to: KAGAIRSSRHEPLKAPAPDTGYS*AEGRSG
Trigger: CCCAGACCTACCCTCAGCCCAGCTATAACCAGTATC...CGGTGCTGGAGCCTTCAGAGGCTCGTGCCGGCTGCTTCTAATAGCACCTGCCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CCA 90 bp AAGGCAGGTGCTATTAGAAGCAGCCGGCACGAGCCTCTGAAGGCTCCAGCACCGGTCGGGCTCTGTAGATaGAAGATGCTTCACGGAGAT +
Preference number: 4 (lower is better)
Translates to: KAGAIRSSRHEPLKAPAPVGLCR*KMLHGD
Trigger: ATCTCCGTGAAGCATCTTCCATCTACAGAGCCCGAC...CGGTGCTGGAGCCTTCAGAGGCTCGTGCCGGCTGCTTCTAATAGCACCTGCCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR GCA 90 bp AAGGCAGGTGCTATTAGAAGCAGCCGGCACGAGCCTCTGAAGGCTCCAGCACCGCGGGCCACTTTGAAGTaGAGGTCACAGTTATATGTG +
Preference number: 4 (lower is better)
Translates to: KAGAIRSSRHEPLKAPAPRATLK*RSQLYV
Trigger: CACATATAACTGTGACCTGCACTTCAAAGTGGCCCG...CGGTGCTGGAGCCTTCAGAGGCTCGTGCCGGCTGCTTCTAATAGCACCTGCCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR GCA 90 bp CCTTCCCTTCACCCTCTCACCCGCTTATGCCCACCAGAAACTACCACGACTCCTCCTTCCTCGTTGTATTaGCTCACCAGCTTGTCTGCC +
Preference number: 4 (lower is better)
Translates to: PSLHPLTRLCPPETTTTPPSSLY*LTSLSA
Trigger: GGCAGACAAGCTGGTGAGGCAATACAACGAGGAAGG...AGGAGTCGTGGTAGTTTCTGGTGGGCATAAGCGGGTGAGAGGGTGAAGGGAAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206832.2
CDS-3UTR CCA 90 bp AAGGCAGGTGCTATTAGAAGCAGCCGGCACGAGCCTCTGAAGGCTCCAGCACCGGGCCTCTTTCGATTCTaGAATTGTGGTCTGTCTGTC +
Preference number: 4 (lower is better)
Translates to: KAGAIRSSRHEPLKAPAPGLFRF*NCGLSV
Trigger: GACAGACAGACCACAATTCCAGAATCGAAAGAGGCC...CGGTGCTGGAGCCTTCAGAGGCTCGTGCCGGCTGCTTCTAATAGCACCTGCCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CCA 90 bp GAAAAAGGGGCCAAGGCAGGTGCTATTAGAAGCAGCCGGCACGAGCCTCTGAAGGCCCTCAATCGTCAATaGATAGCCACTACTCCGGTC +
Preference number: 4 (lower is better)
Translates to: EKGAKAGAIRSSRHEPLKALNRQ*IATTPV
Trigger: GACCGGAGTAGTGGCTATCCATTGACGATTGAGGGC...CTTCAGAGGCTCGTGCCGGCTGCTTCTAATAGCACCTGCCTTGGCCCCTTTTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR TCA 90 bp AGTCACTGTGGCCTCACAAGGGAGGCTTCTTTAGCTAAGAAGGCAGGGGAGGAGGGTCTCGGGCCACTTTaGAGTGCAGGTCACAGTTAT +
Preference number: 4 (lower is better)
Translates to: SHCGLTREASLAKKAGEEGLGPL*SAGHSY
Trigger: ATAACTGTGACCTGCACTTCAAAGTGGCCCGAGACC...CTCCTCCCCTGCCTTCTTAGCTAAAGAAGCCTCCCTTGTGAGGCCACAGTGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR TCA 90 bp AGTCACTGTGGCCTCACAAGGGAGGCTTCTTTAGCTAAGAAGGCAGGGGAGGAGTTTCGGGCAGCGATCTaGATAAGACGGTTGAGGCAC +
Preference number: 4 (lower is better)
Translates to: SHCGLTREASLAKKAGEEFRAAI*IRRLRH
Trigger: GTGCCTCAACCGTCTTATTCAGATCGCTGCCCGAAA...CTCCTCCCCTGCCTTCTTAGCTAAAGAAGCCTCCCTTGTGAGGCCACAGTGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR GCA 90 bp TGGCACCTGGAAGAGCAATGGAGGTGGAGGTGGTGGTGGAGGTGGAGGTGGTGGCTTGACTCATTTTCTTaGTTGATGACTGGTGTCTCG +
Preference number: 4 (lower is better)
Translates to: WHLEEQWRWRWWWRWRWWLDSFS*LMTGVS
Trigger: CGAGACACCAGTCATCAAGCAAGAAAATGAGTCAAG...CCACCACCTCCACCTCCACCACCACCTCCACCTCCATTGCTCTTCCAGGTGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206832.2
CDS-3UTR CCA 90 bp CTGTATGAAGAGAGAAGCTCCTCTGGAAAAAGTGGGCTAGAGAGAGGCAGCCCTCTGAGGGGGAGGTGCTaGATGAATGTGAACCCTGGG +
Preference number: 4 (lower is better)
Translates to: LYEERSSSGKSGLERGSPLRGRC*MNVNPG
Trigger: CCCAGGGTTCACATTCATCCAGCACCTCCCCCTCAG...AGGGCTGCCTCTCTCTAGCCCACTTTTTCCAGAGGAGCTTCTCTCTTCATACAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CCA 90 bp AGTCACTGTGGCCTCACAAGGGAGGCTTCTTTAGCTAAGAAGGCAGGGGAGGAGAGGGCTATAGCTAGGTaGTGGTGGTGGTTGTTGTGG +
Preference number: 4 (lower is better)
Translates to: SHCGLTREASLAKKAGEERAIAR*WWWLLW
Trigger: CCACAACAACCACCACCACCACCTAGCTATAGCCCT...CTCCTCCCCTGCCTTCTTAGCTAAAGAAGCCTCCCTTGTGAGGCCACAGTGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR TCA 90 bp GTTAAAGGTGATTTTGTTGTTTCGAGGGTGTGGCTCTTCCTCGGTTACCTGAACGCTGGCACGGGCTCCTaGCCACAGGTATGCAAAGCC +
Preference number: 4 (lower is better)
Translates to: VKGDFVVSRVWLFLGYLNAGTGS*PQVCKA
Trigger: GGCTTTGCATACCTGTGGTCAGGAGCCCGTGCCAGC...GTTCAGGTAACCGAGGAAGAGCCACACCCTCGAAACAACAAAATCACCTTTAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR TCA 90 bp AGTCACTGTGGCCTCACAAGGGAGGCTTCTTTAGCTAAGAAGGCAGGGGAGGAGCCCGCATCTTATCCATaGTGGCATTGGTACCCAGAA +
Preference number: 4 (lower is better)
Translates to: SHCGLTREASLAKKAGEEPASYP*WHWYPE
Trigger: TTCTGGGTACCAATGCCATCATGGATAAGATGCGGG...CTCCTCCCCTGCCTTCTTAGCTAAAGAAGCCTCCCTTGTGAGGCCACAGTGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR GCA 90 bp AAGGCAGGTGCTATTAGAAGCAGCCGGCACGAGCCTCTGAAGGCTCCAGCACCGCTTGACTCATTTTCTTaGTTGATGACTGGTGTCTCG +
Preference number: 4 (lower is better)
Translates to: KAGAIRSSRHEPLKAPAPLDSFS*LMTGVS
Trigger: CGAGACACCAGTCATCAAGCAAGAAAATGAGTCAAG...CGGTGCTGGAGCCTTCAGAGGCTCGTGCCGGCTGCTTCTAATAGCACCTGCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR GCA 90 bp AGTCACTGTGGCCTCACAAGGGAGGCTTCTTTAGCTAAGAAGGCAGGGGAGGAGTCTCACACTCTGCTTTaGTCTTTGGCCCAATGGTGC +
Preference number: 4 (lower is better)
Translates to: SHCGLTREASLAKKAGEESHTLL*SLAQWC
Trigger: GCACCATTGGGCCAAAGAGCAAAGCAGAGTGTGAGA...CTCCTCCCCTGCCTTCTTAGCTAAAGAAGCCTCCCTTGTGAGGCCACAGTGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CCA 90 bp GTTAAAGGTGATTTTGTTGTTTCGAGGGTGTGGCTCTTCCTCGGTTACCTGAACCCACCTCCCCGGTTCTaGAAGCCTCCTCGGTTGCCT +
Preference number: 4 (lower is better)
Translates to: VKGDFVVSRVWLFLGYLNPPPRF*KPPRLP
Trigger: AGGCAACCGAGGAGGCTTCCAGAACCGGGGAGGTGG...GTTCAGGTAACCGAGGAAGAGCCACACCCTCGAAACAACAAAATCACCTTTAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR TCA 90 bp CATTCGGGAAGTGAGAGTAATCAAAAGGACCACTGTAAAACATTGCAGGTCTGGTCTTCAGCAGGAGGCTaGGGAGAGCGGCCCCTTCGA +
Preference number: 4 (lower is better)
Translates to: HSGSESNQKDHCKTLQVWSSAGG*GERPLR
Trigger: TCGAAGGGGCCGCTCTCCTCAGCCTCCTGCTGAAGA...CCAGACCTGCAATGTTTTACAGTGGTCCTTTTGATTACTCTCACTTCCCGAATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000206832.2
CDS-3UTR TCA 90 bp CTGTATGAAGAGAGAAGCTCCTCTGGAAAAAGTGGGCTAGAGAGAGGCAGCCCTTTTCGGGCAGCGATCTaGATAAGACGGTTGAGGCAC +
Preference number: 4 (lower is better)
Translates to: LYEERSSSGKSGLERGSPFRAAI*IRRLRH
Trigger: GTGCCTCAACCGTCTTATTCAGATCGCTGCCCGAAA...AGGGCTGCCTCTCTCTAGCCCACTTTTTCCAGAGGAGCTTCTCTCTTCATACAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CCA 90 bp AGTCACTGTGGCCTCACAAGGGAGGCTTCTTTAGCTAAGAAGGCAGGGGAGGAGGAATGTTGTACTTCTTaGAAGGGTTGGAGGCAGCGT +
Preference number: 4 (lower is better)
Translates to: SHCGLTREASLAKKAGEEECCTS*KGWRQR
Trigger: ACGCTGCCTCCAACCCTTCCAAGAAGTACAACATTC...CTCCTCCCCTGCCTTCTTAGCTAAAGAAGCCTCCCTTGTGAGGCCACAGTGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CCA 90 bp CTTCACCCTCTCACCCGCTTATGCCCACCAGAAACTACCACGACTCCTGGAGTAGAATGTTGTACTTCTTaGAAGGGTTGGAGGCAGCGT +
Preference number: 4 (lower is better)
Translates to: LHPLTRLCPPETTTTPGVECCTS*KGWRQR
Trigger: ACGCTGCCTCCAACCCTTCCAAGAAGTACAACATTC...TACTCCAGGAGTCGTGGTAGTTTCTGGTGGGCATAAGCGGGTGAGAGGGTGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206832.2
CDS-3UTR CCA 90 bp AGTCACTGTGGCCTCACAAGGGAGGCTTCTTTAGCTAAGAAGGCAGGGGAGGAGACAATAGCTTTCCGCTaGAAGCCTTCAAACGGTCTC +
Preference number: 4 (lower is better)
Translates to: SHCGLTREASLAKKAGEETIAFR*KPSNGL
Trigger: GAGACCGTTTGAAGGCTTCCAGCGGAAAGCTATTGT...CTCCTCCCCTGCCTTCTTAGCTAAAGAAGCCTCCCTTGTGAGGCCACAGTGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR TCA 90 bp CATGTTCATAGCCACGAGTGTGTAAACTTTTCAAGAGAAAGCTCCTTGCTGGTAGCTGGCACGGGCTCCTaGCCACAGGTATGCAAAGCC +
Preference number: 4 (lower is better)
Translates to: HVHSHECVNFSRESSLLVAGTGS*PQVCKA
Trigger: GGCTTTGCATACCTGTGGTCAGGAGCCCGTGCCAGC...TACCAGCAAGGAGCTTTCTCTTGAAAAGTTTACACACTCGTGGCTATGAACATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108401.3
CDS-3UTR GCA 90 bp CTTCACCCTCTCACCCGCTTATGCCCACCAGAAACTACCACGACTCCTGGAGTACAGAATCTCACACTCTaGTTTGCTCTTTGGCCCAAT +
Preference number: 4 (lower is better)
Translates to: LHPLTRLCPPETTTTPGVQNLTL*FALWPN
Trigger: ATTGGGCCAAAGAGCAAAGCAGAGTGTGAGATTCTG...TACTCCAGGAGTCGTGGTAGTTTCTGGTGGGCATAAGCGGGTGAGAGGGTGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206832.2
CDS-3UTR GCA 90 bp TCTCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACAGACGCTTGTGTGCATGGCCCACGTGGTCTTaGCAGCAGCAGGCAGGCCTA +
Preference number: 4 (lower is better)
Translates to: SLQVQKAVTIQLNRRLCAWPTWS*QQQAGL
Trigger: TAGGCCTGCCTGCTGCTGGCAAGACCACGTGGGCCA...TGCACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR GCA 90 bp AAAAGACATGTTCATAGCCACGAGTGTGTAAACTTTTCAAGAGAAAGCTCCTTGTCCAGGCCGCGGCGCTaGAGCTCCTCGCGAAGTTCG +
Preference number: 4 (lower is better)
Translates to: KRHVHSHECVNFSRESSLSRPRR*SSSRSS
Trigger: CGAACTTCGCGAGGAGCTGCAGCGCCGCGGCCTGGA...CAAGGAGCTTTCTCTTGAAAAGTTTACACACTCGTGGCTATGAACATGTCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108401.3
CDS-3UTR TCA 90 bp TCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACAGACGCTTGTGTGCAAAACACACGCCCTCTTCTaGCCCCATAGCTGGCACGGG +
Preference number: 4 (lower is better)
Translates to: SPSTKSSYNPTEQTLVCKTHALF*PHSWHG
Trigger: CCCGTGCCAGCTATGGGGTCAGAAGAGGGCGTGTGT...TTTGCACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR TCA 90 bp TTAAGGGAAAGAAAGATGCACAGGAAAAGACATGTTCATAGCCACGAGTGTGTAACACACGCCCTCTTCTaGCCCCATAGCTGGCACGGG +
Preference number: 4 (lower is better)
Translates to: LRERKMHRKRHVHSHECVTHALF*PHSWHG
Trigger: CCCGTGCCAGCTATGGGGTCAGAAGAGGGCGTGTGT...TACACACTCGTGGCTATGAACATGTCTTTTCCTGTGCATCTTTCTTTCCCTTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108401.3
CDS-3UTR TCA 90 bp AGTCACTGTGGCCTCACAAGGGAGGCTTCTTTAGCTAAGAAGGCAGGGGAGGAGCGACATCAGGCAAAGTaGAGTTGGCTTTCATTTCTA +
Preference number: 4 (lower is better)
Translates to: SHCGLTREASLAKKAGEERHQAK*SWLSFL
Trigger: TAGAAATGAAAGCCAACTTCACTTTGCCTGATGTCG...CTCCTCCCCTGCCTTCTTAGCTAAAGAAGCCTCCCTTGTGAGGCCACAGTGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR TCA 90 bp GTTAAAGGTGATTTTGTTGTTTCGAGGGTGTGGCTCTTCCTCGGTTACCTGAACCCCGCTGGAGCTCAATaGACAGAACCTCATCCAGGA +
Preference number: 4 (lower is better)
Translates to: VKGDFVVSRVWLFLGYLNPAGAQ*TEPHPG
Trigger: TCCTGGATGAGGTTCTGTTCATTGAGCTCCAGCGGG...GTTCAGGTAACCGAGGAAGAGCCACACCCTCGAAACAACAAAATCACCTTTAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR GCA 90 bp TCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACAGACGCTTGTGTGCAAACCTCACCAGCTTGTCTaGCTCCTCCCGCTGGAGCTC +
Preference number: 4 (lower is better)
Translates to: SPSTKSSYNPTEQTLVCKPHQLV*LLPLEL
Trigger: GAGCTCCAGCGGGAGGAGGCAGACAAGCTGGTGAGG...TTTGCACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CCA 90 bp GAAAAAGGGGCCAAGGCAGGTGCTATTAGAAGCAGCCGGCACGAGCCTCTGAAGTTCTTGCTTGATGACTaGTGTCTCGTAGAATTGGTT +
Preference number: 4 (lower is better)
Translates to: EKGAKAGAIRSSRHEPLKFLLDD*CLVELV
Trigger: AACCAATTCTACGAGACACCAGTCATCAAGCAAGAA...CTTCAGAGGCTCGTGCCGGCTGCTTCTAATAGCACCTGCCTTGGCCCCTTTTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CCA 90 bp CATTCGGGAAGTGAGAGTAATCAAAAGGACCACTGTAAAACATTGCAGGTCTGGCTGAGGGGGAGGTGCTaGATGAATGTGAACCCTGGG +
Preference number: 4 (lower is better)
Translates to: HSGSESNQKDHCKTLQVWLRGRC*MNVNPG
Trigger: CCCAGGGTTCACATTCATCCAGCACCTCCCCCTCAG...CCAGACCTGCAATGTTTTACAGTGGTCCTTTTGATTACTCTCACTTCCCGAATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000206832.2
CDS-3UTR CCA 90 bp GTTAAAGGTGATTTTGTTGTTTCGAGGGTGTGGCTCTTCCTCGGTTACCTGAACTCCTTGGTTGTAGGGTaGCTGGCTGTAACTCGGCTG +
Preference number: 4 (lower is better)
Translates to: VKGDFVVSRVWLFLGYLNSLVVG*LAVTRL
Trigger: CAGCCGAGTTACAGCCAGCCACCCTACAACCAAGGA...GTTCAGGTAACCGAGGAAGAGCCACACCCTCGAAACAACAAAATCACCTTTAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR TCA 90 bp CATTCGGGAAGTGAGAGTAATCAAAAGGACCACTGTAAAACATTGCAGGTCTGGCCCGCTGGAGCTCAATaGACAGAACCTCATCCAGGA +
Preference number: 4 (lower is better)
Translates to: HSGSESNQKDHCKTLQVWPAGAQ*TEPHPG
Trigger: TCCTGGATGAGGTTCTGTTCATTGAGCTCCAGCGGG...CCAGACCTGCAATGTTTTACAGTGGTCCTTTTGATTACTCTCACTTCCCGAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206832.2
CDS-3UTR CCA 90 bp CATTCGGGAAGTGAGAGTAATCAAAAGGACCACTGTAAAACATTGCAGGTCTGGCCAATACGGACAACGTaGGGGTCGGGCTCTGTAGAT +
Preference number: 4 (lower is better)
Translates to: HSGSESNQKDHCKTLQVWPIRTT*GSGSVD
Trigger: ATCTACAGAGCCCGACCCCCACGTTGTCCGTATTGG...CCAGACCTGCAATGTTTTACAGTGGTCCTTTTGATTACTCTCACTTCCCGAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000206832.2
CDS-3UTR CCA 90 bp GTTAAAGGTGATTTTGTTGTTTCGAGGGTGTGGCTCTTCCTCGGTTACCTGAACGCTATAGCTAGGTGGTaGTGGTGGTTGTTGTGGTGG +
Preference number: 4 (lower is better)
Translates to: VKGDFVVSRVWLFLGYLNAIARW*WWLLWW
Trigger: CCACCACAACAACCACCACCACCACCTAGCTATAGC...GTTCAGGTAACCGAGGAAGAGCCACACCCTCGAAACAACAAAATCACCTTTAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CCA 90 bp GTTAAAGGTGATTTTGTTGTTTCGAGGGTGTGGCTCTTCCTCGGTTACCTGAACAGGGCTATAGCTAGGTaGTGGTGGTGGTTGTTGTGG +
Preference number: 4 (lower is better)
Translates to: VKGDFVVSRVWLFLGYLNRAIAR*WWWLLW
Trigger: CCACAACAACCACCACCACCACCTAGCTATAGCCCT...GTTCAGGTAACCGAGGAAGAGCCACACCCTCGAAACAACAAAATCACCTTTAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CCA 90 bp CATTCGGGAAGTGAGAGTAATCAAAAGGACCACTGTAAAACATTGCAGGTCTGGTCCTTGGTTGTAGGGTaGCTGGCTGTAACTCGGCTG +
Preference number: 4 (lower is better)
Translates to: HSGSESNQKDHCKTLQVWSLVVG*LAVTRL
Trigger: CAGCCGAGTTACAGCCAGCCACCCTACAACCAAGGA...CCAGACCTGCAATGTTTTACAGTGGTCCTTTTGATTACTCTCACTTCCCGAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206832.2
CDS-3UTR CCA 90 bp AGTTCAATAGTCACACTCTCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACGGAGGTGGAGGTGGTaGGGCTGTGTAGCCCTGGGT +
Preference number: 4 (lower is better)
Translates to: SSIVTLSPSTKSSYNPTERRWRW*GCVALG
Trigger: ACCCAGGGCTACACAGCCCCACCACCTCCACCTCCG...TTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGAGAGTGTGACTATTGAACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CCA 90 bp AGTTCAATAGTCACACTCTCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAATGGCGGAGGTGGAGGTaGTGGGGCTGTGTAGCCCTG +
Preference number: 4 (lower is better)
Translates to: SSIVTLSPSTKSSYNPTEWRRWR*WGCVAL
Trigger: CAGGGCTACACAGCCCCACCACCTCCACCTCCGCCA...TTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGAGAGTGTGACTATTGAACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR TCA 90 bp AGTTCAATAGTCACACTCTCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAATCTTCAGCAGGAGGCTaGGGAGAGCGGCCCCTTCGA +
Preference number: 4 (lower is better)
Translates to: SSIVTLSPSTKSSYNPTESSAGG*GERPLR
Trigger: TCGAAGGGGCCGCTCTCCTCAGCCTCCTGCTGAAGA...TTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGAGAGTGTGACTATTGAACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR TCA 90 bp AGTTCAATAGTCACACTCTCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAAGCTGGCACGGGCTCCTaGCCACAGGTATGCAAAGCC +
Preference number: 4 (lower is better)
Translates to: SSIVTLSPSTKSSYNPTEAGTGS*PQVCKA
Trigger: GGCTTTGCATACCTGTGGTCAGGAGCCCGTGCCAGC...TTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGAGAGTGTGACTATTGAACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR TCA 90 bp GTTAAAGGTGATTTTGTTGTTTCGAGGGTGTGGCTCTTCCTCGGTTACCTGAACTTACTGTGCGGTCTTTaGGGTCCTCATCAGTTGGAC +
Preference number: 4 (lower is better)
Translates to: VKGDFVVSRVWLFLGYLNLLCGL*GPHQLD
Trigger: GTCCAACTGATGAGGACCTCAAAGACCGCACAGTAA...GTTCAGGTAACCGAGGAAGAGCCACACCCTCGAAACAACAAAATCACCTTTAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR GCA 90 bp AGTTCAATAGTCACACTCTCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAATGGCCCACGTGGTCTTaGCAGCAGCAGGCAGGCCTA +
Preference number: 4 (lower is better)
Translates to: SSIVTLSPSTKSSYNPTEWPTWS*QQQAGL
Trigger: TAGGCCTGCCTGCTGCTGGCAAGACCACGTGGGCCA...TTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGAGAGTGTGACTATTGAACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR GCA 90 bp AACAGACGCTTGTGTGCAAAGTTACGGGGAACTGAGACATCATATAAAAAGTTAAACCTCCTCGGTAGTTaGCTCCTCCACCACCGCTGC +
Preference number: 4 (lower is better)
Translates to: NRRLCAKLRGTETSYKKLNLLGS*LLHHRC
Trigger: GCAGCGGTGGTGGAGGAGGCAACTACCGAGGAGGTT...TAACTTTTTATATGATGTCTCAGTTCCCCGTAACTTTGCACACAAGCGTCTGTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CCA 90 bp TCTCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACAGACGCTTGTGTGCACCAATACGGACAACGTaGGGGTCGGGCTCTGTAGAT +
Preference number: 4 (lower is better)
Translates to: SLQVQKAVTIQLNRRLCAPIRTT*GSGSVD
Trigger: ATCTACAGAGCCCGACCCCCACGTTGTCCGTATTGG...TGCACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CCA 90 bp CATTCGGGAAGTGAGAGTAATCAAAAGGACCACTGTAAAACATTGCAGGTCTGGGCTATAGCTAGGTGGTaGTGGTGGTTGTTGTGGTGG +
Preference number: 4 (lower is better)
Translates to: HSGSESNQKDHCKTLQVWAIARW*WWLLWW
Trigger: CCACCACAACAACCACCACCACCACCTAGCTATAGC...CCAGACCTGCAATGTTTTACAGTGGTCCTTTTGATTACTCTCACTTCCCGAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206832.2
CDS-3UTR CCA 90 bp TCTCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACAGACGCTTGTGTGCAGTAGTTCCCGTAGTATaGCGGCCACTGGCTCTGGTT +
Preference number: 4 (lower is better)
Translates to: SLQVQKAVTIQLNRRLCAVVPVV*RPLALV
Trigger: AACCAGAGCCAGTGGCCGCCATACTACGGGAACTAC...TGCACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR TCA 90 bp TTGACTACAAGTTTAAGTATGGATGTTAAGGGAAAGAAAGATGCACAGGAAAAGTCTTCAGCAGGAGGCTaGGGAGAGCGGCCCCTTCGA +
Preference number: 4 (lower is better)
Translates to: LTTSLSMDVKGKKDAQEKSSAGG*GERPLR
Trigger: TCGAAGGGGCCGCTCTCCTCAGCCTCCTGCTGAAGA...CTTTTCCTGTGCATCTTTCTTTCCCTTAACATCCATACTTAAACTTGTAGTCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108401.3
CDS-3UTR TCA 90 bp CACTCTCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACAGACGCTTGTGTGGTCTCGGGCCACTTTaGAGTGCAGGTCACAGTTAT +
Preference number: 4 (lower is better)
Translates to: HSLQVQKAVTIQLNRRLCGLGPL*SAGHSY
Trigger: ATAACTGTGACCTGCACTTCAAAGTGGCCCGAGACC...ACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGAGAGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR TCA 90 bp CATGTTCATAGCCACGAGTGTGTAAACTTTTCAAGAGAAAGCTCCTTGCTGGTAGGTCTCGGGCCACTTTaGAGTGCAGGTCACAGTTAT +
Preference number: 4 (lower is better)
Translates to: HVHSHECVNFSRESSLLVGLGPL*SAGHSY
Trigger: ATAACTGTGACCTGCACTTCAAAGTGGCCCGAGACC...TACCAGCAAGGAGCTTTCTCTTGAAAAGTTTACACACTCGTGGCTATGAACATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108401.3
CDS-3UTR TCA 90 bp AGTTCAATAGTCACACTCTCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAAAGACGGTTGAGGCACTaGGTGGCCTGCTGGATCAGG +
Preference number: 4 (lower is better)
Translates to: SSIVTLSPSTKSSYNPTERRLRH*VACWIR
Trigger: CCTGATCCAGCAGGCCACTCAGTGCCTCAACCGTCT...TTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGAGAGTGTGACTATTGAACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR GCA 90 bp TCTCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACAGACGCTTGTGTGCACCTTCCTCGTTGTATTaGCTCACCAGCTTGTCTGCC +
Preference number: 4 (lower is better)
Translates to: SLQVQKAVTIQLNRRLCAPSSLY*LTSLSA
Trigger: GGCAGACAAGCTGGTGAGGCAATACAACGAGGAAGG...TGCACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CCA 90 bp CATGTTCATAGCCACGAGTGTGTAAACTTTTCAAGAGAAAGCTCCTTGCTGGTAGCCCTCAATCGTCAATaGATAGCCACTACTCCGGTC +
Preference number: 4 (lower is better)
Translates to: HVHSHECVNFSRESSLLVALNRQ*IATTPV
Trigger: GACCGGAGTAGTGGCTATCCATTGACGATTGAGGGC...TACCAGCAAGGAGCTTTCTCTTGAAAAGTTTACACACTCGTGGCTATGAACATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108401.3
CDS-3UTR CCA 90 bp GTTAAAGGTGATTTTGTTGTTTCGAGGGTGTGGCTCTTCCTCGGTTACCTGAACACAATAGCTTTCCGCTaGAAGCCTTCAAACGGTCTC +
Preference number: 4 (lower is better)
Translates to: VKGDFVVSRVWLFLGYLNTIAFR*KPSNGL
Trigger: GAGACCGTTTGAAGGCTTCCAGCGGAAAGCTATTGT...GTTCAGGTAACCGAGGAAGAGCCACACCCTCGAAACAACAAAATCACCTTTAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CCA 90 bp TCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACAGACGCTTGTGTGCAAATCTGCCTCCTCCCGCTaGAGCTCAATGAACAGAACC +
Preference number: 4 (lower is better)
Translates to: SPSTKSSYNPTEQTLVCKSASSR*SSMNRT
Trigger: GGTTCTGTTCATTGAGCTCCAGCGGGAGGAGGCAGA...TTTGCACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CCA 90 bp TCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACAGACGCTTGTGTGCAAATGCTGGTATTGGCGCTaGAGCCAGGGATGTTGCTGT +
Preference number: 4 (lower is better)
Translates to: SPSTKSSYNPTEQTLVCKCWYWR*SQGCCC
Trigger: ACAGCAACATCCCTGGCTCCAGCGCCAATACCAGCA...TTTGCACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR TCA 90 bp TCTCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACAGACGCTTGTGTGCACCCGCATCTTATCCATaGTGGCATTGGTACCCAGAA +
Preference number: 4 (lower is better)
Translates to: SLQVQKAVTIQLNRRLCAPASYP*WHWYPE
Trigger: TTCTGGGTACCAATGCCATCATGGATAAGATGCGGG...TGCACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR TCA 90 bp CACTCTCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACAGACGCTTGTGTTTTCCGTCTCTGGGCTaGCCCATAAACATTGGTCTG +
Preference number: 4 (lower is better)
Translates to: HSLQVQKAVTIQLNRRLCFPSLG*PINIGL
Trigger: CAGACCAATGTTTATGGGTCAGCCCAGAGACGGAAA...ACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGAGAGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR GCA 90 bp CACTCTCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACAGACGCTTGTGTTCTCACACTCTGCTTTaGTCTTTGGCCCAATGGTGC +
Preference number: 4 (lower is better)
Translates to: HSLQVQKAVTIQLNRRLCSHTLL*SLAQWC
Trigger: GCACCATTGGGCCAAAGAGCAAAGCAGAGTGTGAGA...ACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGAGAGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CCA 90 bp TCTCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACAGACGCTTGTGTGCAGTCGGGCTCTGTAGATaGAAGATGCTTCACGGAGAT +
Preference number: 4 (lower is better)
Translates to: SLQVQKAVTIQLNRRLCAVGLCR*KMLHGD
Trigger: ATCTCCGTGAAGCATCTTCCATCTACAGAGCCCGAC...TGCACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CCA 90 bp CATGTTCATAGCCACGAGTGTGTAAACTTTTCAAGAGAAAGCTCCTTGCTGGTAGTCGGGCTCTGTAGATaGAAGATGCTTCACGGAGAT +
Preference number: 4 (lower is better)
Translates to: HVHSHECVNFSRESSLLVVGLCR*KMLHGD
Trigger: ATCTCCGTGAAGCATCTTCCATCTACAGAGCCCGAC...TACCAGCAAGGAGCTTTCTCTTGAAAAGTTTACACACTCGTGGCTATGAACATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108401.3
CDS-3UTR CCA 90 bp AAAAGACATGTTCATAGCCACGAGTGTGTAAACTTTTCAAGAGAAAGCTCCTTGCCAATACGGACAACGTaGGGGTCGGGCTCTGTAGAT +
Preference number: 4 (lower is better)
Translates to: KRHVHSHECVNFSRESSLPIRTT*GSGSVD
Trigger: ATCTACAGAGCCCGACCCCCACGTTGTCCGTATTGG...CAAGGAGCTTTCTCTTGAAAAGTTTACACACTCGTGGCTATGAACATGTCTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000108401.3
CDS-3UTR CCA 90 bp AACAGACGCTTGTGTGCAAAGTTACGGGGAACTGAGACATCATATAAAAAGTTATGCTGGTATTGGCGCTaGAGCCAGGGATGTTGCTGT +
Preference number: 4 (lower is better)
Translates to: NRRLCAKLRGTETSYKKLCWYWR*SQGCCC
Trigger: ACAGCAACATCCCTGGCTCCAGCGCCAATACCAGCA...TAACTTTTTATATGATGTCTCAGTTCCCCGTAACTTTGCACACAAGCGTCTGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR GCA 90 bp CATGTTCATAGCCACGAGTGTGTAAACTTTTCAAGAGAAAGCTCCTTGCTGGTACGGGCCACTTTGAAGTaGAGGTCACAGTTATATGTG +
Preference number: 4 (lower is better)
Translates to: HVHSHECVNFSRESSLLVRATLK*RSQLYV
Trigger: CACATATAACTGTGACCTGCACTTCAAAGTGGCCCG...TACCAGCAAGGAGCTTTCTCTTGAAAAGTTTACACACTCGTGGCTATGAACATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108401.3
CDS-3UTR CCA 90 bp TCTCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACAGACGCTTGTGTGCAGGCCTCTTTCGATTCTaGAATTGTGGTCTGTCTGTC +
Preference number: 4 (lower is better)
Translates to: SLQVQKAVTIQLNRRLCAGLFRF*NCGLSV
Trigger: GACAGACAGACCACAATTCCAGAATCGAAAGAGGCC...TGCACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CCA 90 bp AACAGACGCTTGTGTGCAAAGTTACGGGGAACTGAGACATCATATAAAAAGTTAGCCCTCAATCGTCAATaGATAGCCACTACTCCGGTC +
Preference number: 4 (lower is better)
Translates to: NRRLCAKLRGTETSYKKLALNRQ*IATTPV
Trigger: GACCGGAGTAGTGGCTATCCATTGACGATTGAGGGC...TAACTTTTTATATGATGTCTCAGTTCCCCGTAACTTTGCACACAAGCGTCTGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CCA 90 bp AGTTCAATAGTCACACTCTCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAAGTAGTTCCCGTAGTATaGCGGCCACTGGCTCTGGTT +
Preference number: 4 (lower is better)
Translates to: SSIVTLSPSTKSSYNPTEVVPVV*RPLALV
Trigger: AACCAGAGCCAGTGGCCGCCATACTACGGGAACTAC...TTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGAGAGTGTGACTATTGAACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR TCA 90 bp ATGTTAAGGGAAAGAAAGATGCACAGGAAAAGACATGTTCATAGCCACGAGTGTGTCTTCAATTCTGGGTaGTATACTTGCTGCTGTGGC +
Preference number: 4 (lower is better)
Translates to: MLRERKMHRKRHVHSHECVFNSG*YTCCCG
Trigger: GCCACAGCAGCAAGTATATCACCCAGAATTGAAGAC...ACACTCGTGGCTATGAACATGTCTTTTCCTGTGCATCTTTCTTTCCCTTAACAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108401.3
CDS-3UTR CCA 90 bp CATGTTCATAGCCACGAGTGTGTAAACTTTTCAAGAGAAAGCTCCTTGCTGGTATCGATTCTGGAATTGTaGTCTGTCTGTCTTGAGCTG +
Preference number: 4 (lower is better)
Translates to: HVHSHECVNFSRESSLLVSILEL*SVCLEL
Trigger: CAGCTCAAGACAGACAGACCACAATTCCAGAATCGA...TACCAGCAAGGAGCTTTCTCTTGAAAAGTTTACACACTCGTGGCTATGAACATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108401.3
CDS-3UTR TCA 90 bp TCTCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACAGACGCTTGTGTGCACGACATCAGGCAAAGTaGAGTTGGCTTTCATTTCTA +
Preference number: 4 (lower is better)
Translates to: SLQVQKAVTIQLNRRLCARHQAK*SWLSFL
Trigger: TAGAAATGAAAGCCAACTTCACTTTGCCTGATGTCG...TGCACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR GCA 90 bp TCTCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACAGACGCTTGTGTGCATCTGTAGATGGAAGATaGTTCACGGAGATTTCCTCA +
Preference number: 4 (lower is better)
Translates to: SLQVQKAVTIQLNRRLCASVDGR*FTEISS
Trigger: TGAGGAAATCTCCGTGAAGCATCTTCCATCTACAGA...TGCACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR GCA 90 bp TCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACAGACGCTTGTGTGCAAACAGAATCTCACACTCTaGTTTGCTCTTTGGCCCAAT +
Preference number: 4 (lower is better)
Translates to: SPSTKSSYNPTEQTLVCKQNLTL*FALWPN
Trigger: ATTGGGCCAAAGAGCAAAGCAGAGTGTGAGATTCTG...TTTGCACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CCA 90 bp AAAAGACATGTTCATAGCCACGAGTGTGTAAACTTTTCAAGAGAAAGCTCCTTGGGCCTCTTTCGATTCTaGAATTGTGGTCTGTCTGTC +
Preference number: 4 (lower is better)
Translates to: KRHVHSHECVNFSRESSLGLFRF*NCGLSV
Trigger: GACAGACAGACCACAATTCCAGAATCGAAAGAGGCC...CAAGGAGCTTTCTCTTGAAAAGTTTACACACTCGTGGCTATGAACATGTCTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108401.3
3UTR CAA 72 bp GTACAAAAAGCAGTTACAATCCAACTGAACAGACGCTaGTGTGCAAAGTTACGGGGAACTGAGACATCATAT +
Preference number: 4 (lower is better)
Translates to: VQKAVTIQLNRR*CAKLRGTETSY
Trigger: ATATGATGTCTCAGTTCCCCGTAACTTTGCACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR TCA 90 bp AGTTCAATAGTCACACTCTCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAAGTCTTCAATTCTGGGTaGTATACTTGCTGCTGTGGC +
Preference number: 4 (lower is better)
Translates to: SSIVTLSPSTKSSYNPTEVFNSG*YTCCCG
Trigger: GCCACAGCAGCAAGTATATCACCCAGAATTGAAGAC...TTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGAGAGTGTGACTATTGAACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR GCA 90 bp TTAAGGGAAAGAAAGATGCACAGGAAAAGACATGTTCATAGCCACGAGTGTGTATCTGTAGATGGAAGATaGTTCACGGAGATTTCCTCA +
Preference number: 4 (lower is better)
Translates to: LRERKMHRKRHVHSHECVSVDGR*FTEISS
Trigger: TGAGGAAATCTCCGTGAAGCATCTTCCATCTACAGA...TACACACTCGTGGCTATGAACATGTCTTTTCCTGTGCATCTTTCTTTCCCTTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108401.3
CDS-3UTR GCA 90 bp TCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACAGACGCTTGTGTGCAAATCTGTAGATGGAAGATaGTTCACGGAGATTTCCTCA +
Preference number: 4 (lower is better)
Translates to: SPSTKSSYNPTEQTLVCKSVDGR*FTEISS
Trigger: TGAGGAAATCTCCGTGAAGCATCTTCCATCTACAGA...TTTGCACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CCA 90 bp AACAGACGCTTGTGTGCAAAGTTACGGGGAACTGAGACATCATATAAAAAGTTATCGATTCTGGAATTGTaGTCTGTCTGTCTTGAGCTG +
Preference number: 4 (lower is better)
Translates to: NRRLCAKLRGTETSYKKLSILEL*SVCLEL
Trigger: CAGCTCAAGACAGACAGACCACAATTCCAGAATCGA...TAACTTTTTATATGATGTCTCAGTTCCCCGTAACTTTGCACACAAGCGTCTGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR TCA 90 bp TCTCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACAGACGCTTGTGTGCATCTCCTATCATAGCTTaGCTCATTTTCTTGCTTGAT +
Preference number: 4 (lower is better)
Translates to: SLQVQKAVTIQLNRRLCASPIIA*LIFLLD
Trigger: ATCAAGCAAGAAAATGAGTCAAGCTATGATAGGAGA...TGCACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CCA 90 bp TCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACAGACGCTTGTGTGCAAATTCTTGCTTGATGACTaGTGTCTCGTAGAATTGGTT +
Preference number: 4 (lower is better)
Translates to: SPSTKSSYNPTEQTLVCKFLLDD*CLVELV
Trigger: AACCAATTCTACGAGACACCAGTCATCAAGCAAGAA...TTTGCACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CCA 90 bp TCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACAGACGCTTGTGTGCAAAGAGGTCCTCATCAGTTaGACAGATTACAATAGCTTT +
Preference number: 4 (lower is better)
Translates to: SPSTKSSYNPTEQTLVCKEVLIS*TDYNSF
Trigger: AAAGCTATTGTAATCTGTCCAACTGATGAGGACCTC...TTTGCACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR TCA 90 bp ATGTTAAGGGAAAGAAAGATGCACAGGAAAAGACATGTTCATAGCCACGAGTGTTCTCCTATCATAGCTTaGCTCATTTTCTTGCTTGAT +
Preference number: 4 (lower is better)
Translates to: MLRERKMHRKRHVHSHECSPIIA*LIFLLD
Trigger: ATCAAGCAAGAAAATGAGTCAAGCTATGATAGGAGA...ACACTCGTGGCTATGAACATGTCTTTTCCTGTGCATCTTTCTTTCCCTTAACAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108401.3
CDS-3UTR CCA 90 bp AGGGAAAGAAAGATGCACAGGAAAAGACATGTTCATAGCCACGAGTGTGTAAACAGTTATATGTGTCAATaGCCACAAGTGTATCATCAA +
Preference number: 4 (lower is better)
Translates to: RERKMHRKRHVHSHECVNSYMCQ*PQVYHQ
Trigger: TTGATGATACACTTGTGGCCATTGACACATATAACT...GTTTACACACTCGTGGCTATGAACATGTCTTTTCCTGTGCATCTTTCTTTCCCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108401.3
CDS-3UTR GCA 90 bp TTGACTACAAGTTTAAGTATGGATGTTAAGGGAAAGAAAGATGCACAGGAAAAGCTTGACTCATTTTCTTaGTTGATGACTGGTGTCTCG +
Preference number: 4 (lower is better)
Translates to: LTTSLSMDVKGKKDAQEKLDSFS*LMTGVS
Trigger: CGAGACACCAGTCATCAAGCAAGAAAATGAGTCAAG...CTTTTCCTGTGCATCTTTCTTTCCCTTAACATCCATACTTAAACTTGTAGTCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108401.3
CDS-3UTR CCA 90 bp AGTTCAATAGTCACACTCTCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAAGAGGTCCTCATCAGTTaGACAGATTACAATAGCTTT +
Preference number: 4 (lower is better)
Translates to: SSIVTLSPSTKSSYNPTEEVLIS*TDYNSF
Trigger: AAAGCTATTGTAATCTGTCCAACTGATGAGGACCTC...TTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGAGAGTGTGACTATTGAACT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR TCA 90 bp AGTTCAATAGTCACACTCTCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAATCTCCTATCATAGCTTaGCTCATTTTCTTGCTTGAT +
Preference number: 4 (lower is better)
Translates to: SSIVTLSPSTKSSYNPTESPIIA*LIFLLD
Trigger: ATCAAGCAAGAAAATGAGTCAAGCTATGATAGGAGA...TTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGAGAGTGTGACTATTGAACT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CCA 90 bp TTGACTACAAGTTTAAGTATGGATGTTAAGGGAAAGAAAGATGCACAGGAAAAGTTCTTGCTTGATGACTaGTGTCTCGTAGAATTGGTT +
Preference number: 4 (lower is better)
Translates to: LTTSLSMDVKGKKDAQEKFLLDD*CLVELV
Trigger: AACCAATTCTACGAGACACCAGTCATCAAGCAAGAA...CTTTTCCTGTGCATCTTTCTTTCCCTTAACATCCATACTTAAACTTGTAGTCAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108401.3
CDS-3UTR CCA 90 bp AACAGACGCTTGTGTGCAAAGTTACGGGGAACTGAGACATCATATAAAAAGTTAAGTTATATGTGTCAATaGCCACAAGTGTATCATCAA +
Preference number: 4 (lower is better)
Translates to: NRRLCAKLRGTETSYKKLSYMCQ*PQVYHQ
Trigger: TTGATGATACACTTGTGGCCATTGACACATATAACT...TAACTTTTTATATGATGTCTCAGTTCCCCGTAACTTTGCACACAAGCGTCTGTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS GCA 90 bp GCTGGAAACCGCCGCCGCCCCCACGGCCTCGGAAGCCTCCGCCTCTaGTGTCAAAGCGCTTCTCAGGGGGCGGGCCGGCCTTCCGGCCTT +
Preference number: 5 (lower is better)
Translates to: AGNRRRPHGLGSLRL*CQSASQGAGRPSGL
Trigger: AAGGCCGGAAGGCCGGCCCGCCCCCTGAGAAGCGCTTTGACAGCAGAGGCGGAGGCTTCCGAGGCCGTGGGGGCGGCGGCGGTTTCCAGC
73% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS GCA 90 bp CACCGCTGCCACCACCACCTCCCCGGTTCTGGAAGCCTCCTCGGTTaGCTCCAGGAGGGCCTCGGTTGTCATACCGCTGGAAACCGCCGC +
Preference number: 5 (lower is better)
Translates to: HRCHHHLPGSGSLLG*LQEGLGCHTAGNRR
Trigger: GCGGCGGTTTCCAGCGGTATGACAACCGAGGCCCTCCTGGAGGCAACCGAGGAGGCTTCCAGAACCGGGGAGGTGGTGGTGGCAGCGGTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS GCA 90 bp TCAGCAAGCTCGGCCTTCAGGCCGCGAGTGTCCAGGCCGCGGCGCTaGAGCTCCTCGCGAAGTTCGTTCACCTTCAGGCGACGCACATCC +
Preference number: 5 (lower is better)
Translates to: SASSAFRPRVSRPRR*SSSRSSFTFRRRTS
Trigger: GGATGTGCGTCGCCTGAAGGTGAACGAACTTCGCGAGGAGCTGCAGCGCCGCGGCCTGGACACTCGCGGCCTGAAGGCCGAGCTTGCTGA
67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108401.3
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp TGGCACCTGGAAGAGCAATGGAGGTGGAGGTGGTGGTGGAGGTGGAGGTGGTGGTGGAAGCCTCCTCGGTaGCCTCCAGGAGGGCCTCGG +
Preference number: 5 (lower is better)
Translates to: WHLEEQWRWRWWWRWRWWWKPPR*PPGGPR
Trigger: CCGAGGCCCTCCTGGAGGCAACCGAGGAGGCTTCCA...CCACCACCTCCACCTCCACCACCACCTCCACCTCCATTGCTCTTCCAGGTGCCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp AAGGCAGGTGCTATTAGAAGCAGCCGGCACGAGCCTCTGAAGGCTCCAGCACCGTGGAAGCCTCCTCGGTaGCCTCCAGGAGGGCCTCGG +
Preference number: 5 (lower is better)
Translates to: KAGAIRSSRHEPLKAPAPWKPPR*PPGGPR
Trigger: CCGAGGCCCTCCTGGAGGCAACCGAGGAGGCTTCCA...CGGTGCTGGAGCCTTCAGAGGCTCGTGCCGGCTGCTTCTAATAGCACCTGCCTT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS CCA 90 bp GGCTCCCGGAGGGTTCCGAGCAGGGCTATAGCTAGGTGGTGGTGGTaGTTGTTGTGGTGGTGGTTGTGGTGGCGGTGGCTGTTGTGGTGG +
Preference number: 5 (lower is better)
Translates to: GSRRVPSRAIARWWW*LLWWWLWWRWLLWW
Trigger: CCACCACAACAGCCACCGCCACCACAACCACCACCACAACAACCACCACCACCACCTAGCTATAGCCCTGCTCGGAACCCTCCGGGAGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS CCA 90 bp GCTGGCTCCCGGAGGGTTCCGAGCAGGGCTATAGCTAGGTGGTGGTaGTGGTTGTTGTGGTGGTGGTTGTGGTGGCGGTGGCTGTTGTGG +
Preference number: 5 (lower is better)
Translates to: AGSRRVPSRAIARWW*WLLWWWLWWRWLLW
Trigger: CCACAACAGCCACCGCCACCACAACCACCACCACAACAACCACCACCACCACCTAGCTATAGCCCTGCTCGGAACCCTCCGGGAGCCAGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS CCA 90 bp GCTGCTGGCTCCCGGAGGGTTCCGAGCAGGGCTATAGCTAGGTGGTaGTGGTGGTTGTTGTGGTGGTGGTTGTGGTGGCGGTGGCTGTTG +
Preference number: 5 (lower is better)
Translates to: AAGSRRVPSRAIARW*WWLLWWWLWWRWLL
Trigger: CAACAGCCACCGCCACCACAACCACCACCACAACAACCACCACCACCACCTAGCTATAGCCCTGCTCGGAACCCTCCGGGAGCCAGCAGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS CCA 90 bp GTAGCTGCTGGCTCCCGGAGGGTTCCGAGCAGGGCTATAGCTAGGTaGTGGTGGTGGTTGTTGTGGTGGTGGTTGTGGTGGCGGTGGCTG +
Preference number: 5 (lower is better)
Translates to: VAAGSRRVPSRAIAR*WWWLLWWWLWWRWL
Trigger: CAGCCACCGCCACCACAACCACCACCACAACAACCACCACCACCACCTAGCTATAGCCCTGCTCGGAACCCTCCGGGAGCCAGCAGCTAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS CCA 90 bp TGGTGGGGCTGTGTAGCCCTGGGTGTAGCCTCCTTGGTTGTAGGGTaGCTGGCTGTAACTCGGCTGTGGAGGGGTGTAGCTGCTCACTGT +
Preference number: 5 (lower is better)
Translates to: WWGCVALGVASLVVG*LAVTRLWRGVAAHC
Trigger: ACAGTGAGCAGCTACACCCCTCCACAGCCGAGTTACAGCCAGCCACCCTACAACCAAGGAGGCTACACCCAGGGCTACACAGCCCCACCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp AAGGCAGGTGCTATTAGAAGCAGCCGGCACGAGCCTCTGAAGGCTCCAGCACCGCTGGGTGTAGCCTCCTaGGTTGTAGGGTGGCTGGCT +
Preference number: 5 (lower is better)
Translates to: KAGAIRSSRHEPLKAPAPLGVAS*VVGWLA
Trigger: AGCCAGCCACCCTACAACCAAGGAGGCTACACCCAG...CGGTGCTGGAGCCTTCAGAGGCTCGTGCCGGCTGCTTCTAATAGCACCTGCCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS GCA 90 bp GCCGGCCTTCCGGCCTTCCTCGTTGTATTGCCTCACCAGCTTGTCTaGCTCCTCCCGCTGGAGCTCAATGAACAGAACCTCATCCAGGAA +
Preference number: 5 (lower is better)
Translates to: AGLPAFLVVLPHQLV*LLPLELNEQNLIQE
Trigger: TTCCTGGATGAGGTTCTGTTCATTGAGCTCCAGCGGGAGGAGGCAGACAAGCTGGTGAGGCAATACAACGAGGAAGGCCGGAAGGCCGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS CCA 90 bp AGGCAGGCCTACCATCATCAGAATCTCACACTCTGCTTTGCTCTTTaGCCCAATGGTGCCCCGTATCCGCTCACTGAGGGGGAGGTGCTG +
Preference number: 5 (lower is better)
Translates to: RQAYHHQNLTLCFAL*PNGAPYPLTEGEVL
Trigger: CAGCACCTCCCCCTCAGTGAGCGGATACGGGGCACCATTGGGCCAAAGAGCAAAGCAGAGTGTGAGATTCTGATGATGGTAGGCCTGCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp GAAAAAGGGGCCAAGGCAGGTGCTATTAGAAGCAGCCGGCACGAGCCTCTGAAGACTCTGCTTTGCTCTTaGGCCCAATGGTGCCCCGTA +
Preference number: 5 (lower is better)
Translates to: EKGAKAGAIRSSRHEPLKTLLCS*AQWCPV
Trigger: TACGGGGCACCATTGGGCCAAAGAGCAAAGCAGAGT...CTTCAGAGGCTCGTGCCGGCTGCTTCTAATAGCACCTGCCTTGGCCCCTTTTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp GAAAAAGGGGCCAAGGCAGGTGCTATTAGAAGCAGCCGGCACGAGCCTCTGAAGTTCCGGCCTTCCTCGTaGTATTGCCTCACCAGCTTG +
Preference number: 5 (lower is better)
Translates to: EKGAKAGAIRSSRHEPLKFRPSS*YCLTSL
Trigger: CAAGCTGGTGAGGCAATACAACGAGGAAGGCCGGAA...CTTCAGAGGCTCGTGCCGGCTGCTTCTAATAGCACCTGCCTTGGCCCCTTTTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp CTGTATGAAGAGAGAAGCTCCTCTGGAAAAAGTGGGCTAGAGAGAGGCAGCCCTGTAGGGGTGCTGGTATaGGCGCTGGAGCCAGGGATG +
Preference number: 5 (lower is better)
Translates to: LYEERSSSGKSGLERGSPVGVLV*ALEPGM
Trigger: CATCCCTGGCTCCAGCGCCAATACCAGCACCCCTAC...AGGGCTGCCTCTCTCTAGCCCACTTTTTCCAGAGGAGCTTCTCTCTTCATACAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp CTTCACCCTCTCACCCGCTTATGCCCACCAGAAACTACCACGACTCCTGGAGTACGGTCTCGGGCCACTTaGAAGTGCAGGTCACAGTTA +
Preference number: 5 (lower is better)
Translates to: LHPLTRLCPPETTTTPGVRSRAT*KCRSQL
Trigger: TAACTGTGACCTGCACTTCAAAGTGGCCCGAGACCG...TACTCCAGGAGTCGTGGTAGTTTCTGGTGGGCATAAGCGGGTGAGAGGGTGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp AGTCACTGTGGCCTCACAAGGGAGGCTTCTTTAGCTAAGAAGGCAGGGGAGGAGATTACCCCAGCGGTTTaGGTTGTAGCCACCACCTCC +
Preference number: 5 (lower is better)
Translates to: SHCGLTREASLAKKAGEEITPAV*VVATTS
Trigger: GGAGGTGGTGGCTACAACCAAAACCGCTGGGGTAAT...CTCCTCCCCTGCCTTCTTAGCTAAAGAAGCCTCCCTTGTGAGGCCACAGTGACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS TCA 90 bp AAAACACACACGCCCTCTTCTGACCCCATAGCTGGCACGGGCTCCTaGCCACAGGTATGCAAAGCCCTCAATCGTCAATGGATAGCCACT +
Preference number: 5 (lower is better)
Translates to: KTHTPSSDPIAGTGS*PQVCKALNRQWIAT
Trigger: AGTGGCTATCCATTGACGATTGAGGGCTTTGCATACCTGTGGTCAGGAGCCCGTGCCAGCTATGGGGTCAGAAGAGGGCGTGTGTGTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043765.14
ENSMUST00000108401.3
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp GAAAAAGGGGCCAAGGCAGGTGCTATTAGAAGCAGCCGGCACGAGCCTCTGAAGGCTGGGTGGGGCTTCTaGCTTCATTTCTGTCTTCAA +
Preference number: 5 (lower is better)
Translates to: EKGAKAGAIRSSRHEPLKAGWGF*LHFCLQ
Trigger: TTGAAGACAGAAATGAAGCAAGAAGCCCCACCCAGC...CTTCAGAGGCTCGTGCCGGCTGCTTCTAATAGCACCTGCCTTGGCCCCTTTTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp AAGGCAGGTGCTATTAGAAGCAGCCGGCACGAGCCTCTGAAGGCTCCAGCACCGCTTTCGATTCTGGAATaGTGGTCTGTCTGTCTTGAG +
Preference number: 5 (lower is better)
Translates to: KAGAIRSSRHEPLKAPAPLSILE*WSVCLE
Trigger: CTCAAGACAGACAGACCACAATTCCAGAATCGAAAG...CGGTGCTGGAGCCTTCAGAGGCTCGTGCCGGCTGCTTCTAATAGCACCTGCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS GCA 90 bp CTGTGCCTCCATAACCATAGGAAAAAGGCTCTTCACCTAGCTGAGTaGTGCAAGAGTCCAAGGACCAGCCAATACGGACAACGTGGGGGT +
Preference number: 5 (lower is better)
Translates to: LCLHNHRKKALHLAE*CKSPRTSQYGQRGG
Trigger: ACCCCCACGTTGTCCGTATTGGCTGGTCCTTGGACTCTTGCAGCACTCAGCTAGGTGAAGAGCCTTTTTCCTATGGTTATGGAGGCACAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000043765.14
ENSMUST00000108401.3
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp CTGTATGAAGAGAGAAGCTCCTCTGGAAAAAGTGGGCTAGAGAGAGGCAGCCCTTGTGGTCTGTCTGTCTaGAGCTGTGAGGCTTCAGGG +
Preference number: 5 (lower is better)
Translates to: LYEERSSSGKSGLERGSPCGLSV*SCEASG
Trigger: CCCTGAAGCCTCACAGCTCAAGACAGACAGACCACA...AGGGCTGCCTCTCTCTAGCCCACTTTTTCCAGAGGAGCTTCTCTCTTCATACAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp AAGGCAGGTGCTATTAGAAGCAGCCGGCACGAGCCTCTGAAGGCTCCAGCACCGATCCACTTGCCATTCTaGGTAAAAGAAAGCTCCACA +
Preference number: 5 (lower is better)
Translates to: KAGAIRSSRHEPLKAPAPIHLPF*VKESST
Trigger: TGTGGAGCTTTCTTTTACCAAGAATGGCAAGTGGAT...CGGTGCTGGAGCCTTCAGAGGCTCGTGCCGGCTGCTTCTAATAGCACCTGCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp CTGTATGAAGAGAGAAGCTCCTCTGGAAAAAGTGGGCTAGAGAGAGGCAGCCCTTTGTGGTGGTGGCTGTaGCTGAGGAGCCCGGTTATA +
Preference number: 5 (lower is better)
Translates to: LYEERSSSGKSGLERGSPLWWWL*LRSPVI
Trigger: TATAACCGGGCTCCTCAGCAACAGCCACCACCACAA...AGGGCTGCCTCTCTCTAGCCCACTTTTTCCAGAGGAGCTTCTCTCTTCATACAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS GCA 90 bp GTGGCTGTTGTGGTGGTGGCTGTTGCTGAGGAGCCCGGTTATAGTTaGCTCGGTTGTTGGAGTTGTTGTTATCCCTGTTGTTATTACCCC +
Preference number: 5 (lower is better)
Translates to: VAVVVVAVAEEPGYS*LGCWSCCYPCCYYP
Trigger: GGGGTAATAACAACAGGGATAACAACAACTCCAACAACCGAGGCAACTATAACCGGGCTCCTCAGCAACAGCCACCACCACAACAGCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp AAGGCAGGTGCTATTAGAAGCAGCCGGCACGAGCCTCTGAAGGCTCCAGCACCGTGGTGTCTCGTAGAATaGGTTCTGTCTGGTAATATT +
Preference number: 5 (lower is better)
Translates to: KAGAIRSSRHEPLKAPAPWCLVE*VLSGNI
Trigger: AATATTACCAGACAGAACCAATTCTACGAGACACCA...CGGTGCTGGAGCCTTCAGAGGCTCGTGCCGGCTGCTTCTAATAGCACCTGCCTT
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp CCTTCCCTTCACCCTCTCACCCGCTTATGCCCACCAGAAACTACCACGACTCCTTTGGTACCCAGAATGTaGTACTTCTTGGAAGGGTTG +
Preference number: 5 (lower is better)
Translates to: PSLHPLTRLCPPETTTTPLVPRM*YFLEGL
Trigger: CAACCCTTCCAAGAAGTACAACATTCTGGGTACCAA...AGGAGTCGTGGTAGTTTCTGGTGGGCATAAGCGGGTGAGAGGGTGAAGGGAAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp AAGGCAGGTGCTATTAGAAGCAGCCGGCACGAGCCTCTGAAGGCTCCAGCACCGTCAGGCAAAGTGAAGTaGGCTTTCATTTCTAAGACT +
Preference number: 5 (lower is better)
Translates to: KAGAIRSSRHEPLKAPAPSGKVK*AFISKT
Trigger: AGTCTTAGAAATGAAAGCCAACTTCACTTTGCCTGA...CGGTGCTGGAGCCTTCAGAGGCTCGTGCCGGCTGCTTCTAATAGCACCTGCCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp CATTCGGGAAGTGAGAGTAATCAAAAGGACCACTGTAAAACATTGCAGGTCTGGGTAGGGGTGCTGGTATaGGCGCTGGAGCCAGGGATG +
Preference number: 5 (lower is better)
Translates to: HSGSESNQKDHCKTLQVWVGVLV*ALEPGM
Trigger: CATCCCTGGCTCCAGCGCCAATACCAGCACCCCTAC...CCAGACCTGCAATGTTTTACAGTGGTCCTTTTGATTACTCTCACTTCCCGAATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp GAAAAAGGGGCCAAGGCAGGTGCTATTAGAAGCAGCCGGCACGAGCCTCTGAAGATCCACTTGCCATTCTaGGTAAAAGAAAGCTCCACA +
Preference number: 5 (lower is better)
Translates to: EKGAKAGAIRSSRHEPLKIHLPF*VKESST
Trigger: TGTGGAGCTTTCTTTTACCAAGAATGGCAAGTGGAT...CTTCAGAGGCTCGTGCCGGCTGCTTCTAATAGCACCTGCCTTGGCCCCTTTTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp CTGTATGAAGAGAGAAGCTCCTCTGGAAAAAGTGGGCTAGAGAGAGGCAGCCCTAGAATGTTGTACTTCTaGGAAGGGTTGGAGGCAGCG +
Preference number: 5 (lower is better)
Translates to: LYEERSSSGKSGLERGSPRMLYF*EGLEAA
Trigger: CGCTGCCTCCAACCCTTCCAAGAAGTACAACATTCT...AGGGCTGCCTCTCTCTAGCCCACTTTTTCCAGAGGAGCTTCTCTCTTCATACAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp CATTCGGGAAGTGAGAGTAATCAAAAGGACCACTGTAAAACATTGCAGGTCTGGGTCTCGACCTCCTCGTaGTTGTGCCCAGGTAACCCC +
Preference number: 5 (lower is better)
Translates to: HSGSESNQKDHCKTLQVWVSTSS*LCPGNP
Trigger: GGGGTTACCTGGGCACAACAACGAGGAGGTCGAGAC...CCAGACCTGCAATGTTTTACAGTGGTCCTTTTGATTACTCTCACTTCCCGAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp GTTAAAGGTGATTTTGTTGTTTCGAGGGTGTGGCTCTTCCTCGGTTACCTGAACATTACCCCAGCGGTTTaGGTTGTAGCCACCACCTCC +
Preference number: 5 (lower is better)
Translates to: VKGDFVVSRVWLFLGYLNITPAV*VVATTS
Trigger: GGAGGTGGTGGCTACAACCAAAACCGCTGGGGTAAT...GTTCAGGTAACCGAGGAAGAGCCACACCCTCGAAACAACAAAATCACCTTTAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp TGGATGTTAAGGGAAAGAAAGATGCACAGGAAAAGACATGTTCATAGCCACGAGTCGACCTCCTCGTTGTaGTGCCCAGGTAACCCCGGA +
Preference number: 5 (lower is better)
Translates to: WMLRERKMHRKRHVHSHESTSSL*CPGNPG
Trigger: TCCGGGGTTACCTGGGCACAACAACGAGGAGGTCGA...CTCGTGGCTATGAACATGTCTTTTCCTGTGCATCTTTCTTTCCCTTAACATCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108401.3
CDS-3UTR CAA 90 bp CACTCTCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACAGACGCTTGTGTTCGACCTCCTCGTTGTaGTGCCCAGGTAACCCCGGA +
Preference number: 5 (lower is better)
Translates to: HSLQVQKAVTIQLNRRLCSTSSL*CPGNPG
Trigger: TCCGGGGTTACCTGGGCACAACAACGAGGAGGTCGA...ACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGAGAGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000206832.2
CDS TCA 90 bp CCTCAATCGTCAATGGATAGCCACTACTCCGGTCTCGGGCCACTTTaGAGTGCAGGTCACAGTTATATGTGTCAATGGCCACAAGTGTAT +
Preference number: 5 (lower is better)
Translates to: PQSSMDSHYSGLGPL*SAGHSYMCQWPQVY
Trigger: ATACACTTGTGGCCATTGACACATATAACTGTGACCTGCACTTCAAAGTGGCCCGAGACCGGAGTAGTGGCTATCCATTGACGATTGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043765.14
ENSMUST00000108401.3
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp CTGTATGAAGAGAGAAGCTCCTCTGGAAAAAGTGGGCTAGAGAGAGGCAGCCCTTTTTCAAAGCGGCTATaGGTAGACTTCTTCCCTGTG +
Preference number: 5 (lower is better)
Translates to: LYEERSSSGKSGLERGSPFSKRL*VDFFPV
Trigger: CACAGGGAAGAAGTCTACCAATAGCCGCTTTGAAAA...AGGGCTGCCTCTCTCTAGCCCACTTTTTCCAGAGGAGCTTCTCTCTTCATACAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp AGTCACTGTGGCCTCACAAGGGAGGCTTCTTTAGCTAAGAAGGCAGGGGAGGAGCGGTTGTTGGAGTTGTaGTTATCCCTGTTGTTATTA +
Preference number: 5 (lower is better)
Translates to: SHCGLTREASLAKKAGEERLLEL*LSLLLL
Trigger: TAATAACAACAGGGATAACAACAACTCCAACAACCG...CTCCTCCCCTGCCTTCTTAGCTAAAGAAGCCTCCCTTGTGAGGCCACAGTGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp TCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACAGACGCTTGTGTGCAAACTGGGTGTAGCCTCCTaGGTTGTAGGGTGGCTGGCT +
Preference number: 5 (lower is better)
Translates to: SPSTKSSYNPTEQTLVCKLGVAS*VVGWLA
Trigger: AGCCAGCCACCCTACAACCAAGGAGGCTACACCCAG...TTTGCACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp ATGTTAAGGGAAAGAAAGATGCACAGGAAAAGACATGTTCATAGCCACGAGTGTGTCTCGACCTCCTCGTaGTTGTGCCCAGGTAACCCC +
Preference number: 5 (lower is better)
Translates to: MLRERKMHRKRHVHSHECVSTSS*LCPGNP
Trigger: GGGGTTACCTGGGCACAACAACGAGGAGGTCGAGAC...ACACTCGTGGCTATGAACATGTCTTTTCCTGTGCATCTTTCTTTCCCTTAACAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108401.3
CDS-3UTR CAA 90 bp AGTCACTGTGGCCTCACAAGGGAGGCTTCTTTAGCTAAGAAGGCAGGGGAGGAGACGGAGATTTCCTCATaGATCTTCATTTCAAAACAC +
Preference number: 5 (lower is better)
Translates to: SHCGLTREASLAKKAGEETEISS*IFISKH
Trigger: GTGTTTTGAAATGAAGATCAATGAGGAAATCTCCGT...CTCCTCCCCTGCCTTCTTAGCTAAAGAAGCCTCCCTTGTGAGGCCACAGTGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp CACTCTCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACAGACGCTTGTGTGCCTTCCTCGTTGTATaGCCTCACCAGCTTGTCTGC +
Preference number: 5 (lower is better)
Translates to: HSLQVQKAVTIQLNRRLCAFLVV*PHQLVC
Trigger: GCAGACAAGCTGGTGAGGCAATACAACGAGGAAGGC...ACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGAGAGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp TCTCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACAGACGCTTGTGTGCATTGTGGTGGTGGCTGTaGCTGAGGAGCCCGGTTATA +
Preference number: 5 (lower is better)
Translates to: SLQVQKAVTIQLNRRLCALWWWL*LRSPVI
Trigger: TATAACCGGGCTCCTCAGCAACAGCCACCACCACAA...TGCACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp TCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACAGACGCTTGTGTGCAAATGTGGTCTGTCTGTCTaGAGCTGTGAGGCTTCAGGG +
Preference number: 5 (lower is better)
Translates to: SPSTKSSYNPTEQTLVCKCGLSV*SCEASG
Trigger: CCCTGAAGCCTCACAGCTCAAGACAGACAGACCACA...TTTGCACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp TCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACAGACGCTTGTGTGCAAAACTCTGCTTTGCTCTTaGGCCCAATGGTGCCCCGTA +
Preference number: 5 (lower is better)
Translates to: SPSTKSSYNPTEQTLVCKTLLCS*AQWCPV
Trigger: TACGGGGCACCATTGGGCCAAAGAGCAAAGCAGAGT...TTTGCACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp CATTCGGGAAGTGAGAGTAATCAAAAGGACCACTGTAAAACATTGCAGGTCTGGTACTTCTTGGAAGGGTaGGAGGCAGCGTGTTTGATG +
Preference number: 5 (lower is better)
Translates to: HSGSESNQKDHCKTLQVWYFLEG*EAACLM
Trigger: CATCAAACACGCTGCCTCCAACCCTTCCAAGAAGTA...CCAGACCTGCAATGTTTTACAGTGGTCCTTTTGATTACTCTCACTTCCCGAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp TCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACAGACGCTTGTGTGCAAAGCCTTCCTCGTTGTATaGCCTCACCAGCTTGTCTGC +
Preference number: 5 (lower is better)
Translates to: SPSTKSSYNPTEQTLVCKAFLVV*PHQLVC
Trigger: GCAGACAAGCTGGTGAGGCAATACAACGAGGAAGGC...TTTGCACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp CTGTATGAAGAGAGAAGCTCCTCTGGAAAAAGTGGGCTAGAGAGAGGCAGCCCTCGGTTGTTGGAGTTGTaGTTATCCCTGTTGTTATTA +
Preference number: 5 (lower is better)
Translates to: LYEERSSSGKSGLERGSPRLLEL*LSLLLL
Trigger: TAATAACAACAGGGATAACAACAACTCCAACAACCG...AGGGCTGCCTCTCTCTAGCCCACTTTTTCCAGAGGAGCTTCTCTCTTCATACAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp AAAAGACATGTTCATAGCCACGAGTGTGTAAACTTTTCAAGAGAAAGCTCCTTGCGGTCTCGGGCCACTTaGAAGTGCAGGTCACAGTTA +
Preference number: 5 (lower is better)
Translates to: KRHVHSHECVNFSRESSLRSRAT*KCRSQL
Trigger: TAACTGTGACCTGCACTTCAAAGTGGCCCGAGACCG...CAAGGAGCTTTCTCTTGAAAAGTTTACACACTCGTGGCTATGAACATGTCTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108401.3
CDS-3UTR CAA 90 bp GTTAAAGGTGATTTTGTTGTTTCGAGGGTGTGGCTCTTCCTCGGTTACCTGAACGCAATGCCCATCCACTaGCCATTCTTGGTAAAAGAA +
Preference number: 5 (lower is better)
Translates to: VKGDFVVSRVWLFLGYLNAMPIH*PFLVKE
Trigger: TTCTTTTACCAAGAATGGCAAGTGGATGGGCATTGC...GTTCAGGTAACCGAGGAAGAGCCACACCCTCGAAACAACAAAATCACCTTTAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp CACTCTCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACAGACGCTTGTGTTACTTCTTGGAAGGGTaGGAGGCAGCGTGTTTGATG +
Preference number: 5 (lower is better)
Translates to: HSLQVQKAVTIQLNRRLCYFLEG*EAACLM
Trigger: CATCAAACACGCTGCCTCCAACCCTTCCAAGAAGTA...ACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGAGAGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp GTTAAAGGTGATTTTGTTGTTTCGAGGGTGTGGCTCTTCCTCGGTTACCTGAACTTGGTACCCAGAATGTaGTACTTCTTGGAAGGGTTG +
Preference number: 5 (lower is better)
Translates to: VKGDFVVSRVWLFLGYLNLVPRM*YFLEGL
Trigger: CAACCCTTCCAAGAAGTACAACATTCTGGGTACCAA...GTTCAGGTAACCGAGGAAGAGCCACACCCTCGAAACAACAAAATCACCTTTAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp AACAGACGCTTGTGTGCAAAGTTACGGGGAACTGAGACATCATATAAAAAGTTATTCCGGCCTTCCTCGTaGTATTGCCTCACCAGCTTG +
Preference number: 5 (lower is better)
Translates to: NRRLCAKLRGTETSYKKLFRPSS*YCLTSL
Trigger: CAAGCTGGTGAGGCAATACAACGAGGAAGGCCGGAA...TAACTTTTTATATGATGTCTCAGTTCCCCGTAACTTTGCACACAAGCGTCTGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp AGTTCAATAGTCACACTCTCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACGGTCTCGGGCCACTTaGAAGTGCAGGTCACAGTTA +
Preference number: 5 (lower is better)
Translates to: SSIVTLSPSTKSSYNPTERSRAT*KCRSQL
Trigger: TAACTGTGACCTGCACTTCAAAGTGGCCCGAGACCG...TTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGAGAGTGTGACTATTGAACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp TTGACTACAAGTTTAAGTATGGATGTTAAGGGAAAGAAAGATGCACAGGAAAAGTGTGGTCTGTCTGTCTaGAGCTGTGAGGCTTCAGGG +
Preference number: 5 (lower is better)
Translates to: LTTSLSMDVKGKKDAQEKCGLSV*SCEASG
Trigger: CCCTGAAGCCTCACAGCTCAAGACAGACAGACCACA...CTTTTCCTGTGCATCTTTCTTTCCCTTAACATCCATACTTAAACTTGTAGTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108401.3
CDS-3UTR CAA 90 bp TCTCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACAGACGCTTGTGTGCAGCAATGCCCATCCACTaGCCATTCTTGGTAAAAGAA +
Preference number: 5 (lower is better)
Translates to: SLQVQKAVTIQLNRRLCAAMPIH*PFLVKE
Trigger: TTCTTTTACCAAGAATGGCAAGTGGATGGGCATTGC...TGCACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp AACAGACGCTTGTGTGCAAAGTTACGGGGAACTGAGACATCATATAAAAAGTTAAGAATGTTGTACTTCTaGGAAGGGTTGGAGGCAGCG +
Preference number: 5 (lower is better)
Translates to: NRRLCAKLRGTETSYKKLRMLYF*EGLEAA
Trigger: CGCTGCCTCCAACCCTTCCAAGAAGTACAACATTCT...TAACTTTTTATATGATGTCTCAGTTCCCCGTAACTTTGCACACAAGCGTCTGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp TCTCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACAGACGCTTGTGTGCATTATCCATGATGGCATaGGTACCCAGAATGTTGTAC +
Preference number: 5 (lower is better)
Translates to: SLQVQKAVTIQLNRRLCALSMMA*VPRMLY
Trigger: GTACAACATTCTGGGTACCAATGCCATCATGGATAA...TGCACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp CATGTTCATAGCCACGAGTGTGTAAACTTTTCAAGAGAAAGCTCCTTGCTGGTATGGTGTCTCGTAGAATaGGTTCTGTCTGGTAATATT +
Preference number: 5 (lower is better)
Translates to: HVHSHECVNFSRESSLLVWCLVE*VLSGNI
Trigger: AATATTACCAGACAGAACCAATTCTACGAGACACCA...TACCAGCAAGGAGCTTTCTCTTGAAAAGTTTACACACTCGTGGCTATGAACATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108401.3
CDS-3UTR CAA 90 bp TCTCTCCAAGTACAAAAAGCAGTTACAATCCAACTGAACAGACGCTTGTGTGCATGGTGTCTCGTAGAATaGGTTCTGTCTGGTAATATT +
Preference number: 5 (lower is better)
Translates to: SLQVQKAVTIQLNRRLCAWCLVE*VLSGNI
Trigger: AATATTACCAGACAGAACCAATTCTACGAGACACCA...TGCACACAAGCGTCTGTTCAGTTGGATTGTAACTGCTTTTTGTACTTGGAGAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp AGTTTAAGTATGGATGTTAAGGGAAAGAAAGATGCACAGGAAAAGACATGTTCAGCTGGGTGGGGCTTCTaGCTTCATTTCTGTCTTCAA +
Preference number: 5 (lower is better)
Translates to: SLSMDVKGKKDAQEKTCSAGWGF*LHFCLQ
Trigger: TTGAAGACAGAAATGAAGCAAGAAGCCCCACCCAGC...TGAACATGTCTTTTCCTGTGCATCTTTCTTTCCCTTAACATCCATACTTAAACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108401.3
CDS-3UTR CAA 90 bp AACAGACGCTTGTGTGCAAAGTTACGGGGAACTGAGACATCATATAAAAAGTTACTTTCGATTCTGGAATaGTGGTCTGTCTGTCTTGAG +
Preference number: 5 (lower is better)
Translates to: NRRLCAKLRGTETSYKKLLSILE*WSVCLE
Trigger: CTCAAGACAGACAGACCACAATTCCAGAATCGAAAG...TAACTTTTTATATGATGTCTCAGTTCCCCGTAACTTTGCACACAAGCGTCTGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp AAAAGACATGTTCATAGCCACGAGTGTGTAAACTTTTCAAGAGAAAGCTCCTTGCTTTCGATTCTGGAATaGTGGTCTGTCTGTCTTGAG +
Preference number: 5 (lower is better)
Translates to: KRHVHSHECVNFSRESSLLSILE*WSVCLE
Trigger: CTCAAGACAGACAGACCACAATTCCAGAATCGAAAG...CAAGGAGCTTTCTCTTGAAAAGTTTACACACTCGTGGCTATGAACATGTCTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108401.3
CDS-3UTR CAA 90 bp AACAGACGCTTGTGTGCAAAGTTACGGGGAACTGAGACATCATATAAAAAGTTATTTTCAAAGCGGCTATaGGTAGACTTCTTCCCTGTG +
Preference number: 5 (lower is better)
Translates to: NRRLCAKLRGTETSYKKLFSKRL*VDFFPV
Trigger: CACAGGGAAGAAGTCTACCAATAGCCGCTTTGAAAA...TAACTTTTTATATGATGTCTCAGTTCCCCGTAACTTTGCACACAAGCGTCTGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp ACTACAAGTTTAAGTATGGATGTTAAGGGAAAGAAAGATGCACAGGAAAAGACATTTTCAAAGCGGCTATaGGTAGACTTCTTCCCTGTG +
Preference number: 5 (lower is better)
Translates to: TTSLSMDVKGKKDAQEKTFSKRL*VDFFPV
Trigger: CACAGGGAAGAAGTCTACCAATAGCCGCTTTGAAAA...TGTCTTTTCCTGTGCATCTTTCTTTCCCTTAACATCCATACTTAAACTTGTAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108401.3
CDS-3UTR CAA 90 bp AACAGACGCTTGTGTGCAAAGTTACGGGGAACTGAGACATCATATAAAAAGTTATCAGGCAAAGTGAAGTaGGCTTTCATTTCTAAGACT +
Preference number: 5 (lower is better)
Translates to: NRRLCAKLRGTETSYKKLSGKVK*AFISKT
Trigger: AGTCTTAGAAATGAAAGCCAACTTCACTTTGCCTGA...TAACTTTTTATATGATGTCTCAGTTCCCCGTAACTTTGCACACAAGCGTCTGTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp AACAGACGCTTGTGTGCAAAGTTACGGGGAACTGAGACATCATATAAAAAGTTAACGGAGATTTCCTCATaGATCTTCATTTCAAAACAC +
Preference number: 5 (lower is better)
Translates to: NRRLCAKLRGTETSYKKLTEISS*IFISKH
Trigger: GTGTTTTGAAATGAAGATCAATGAGGAAATCTCCGT...TAACTTTTTATATGATGTCTCAGTTCCCCGTAACTTTGCACACAAGCGTCTGTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS-3UTR CAA 90 bp ACTACAAGTTTAAGTATGGATGTTAAGGGAAAGAAAGATGCACAGGAAAAGACAACGGAGATTTCCTCATaGATCTTCATTTCAAAACAC +
Preference number: 5 (lower is better)
Translates to: TTSLSMDVKGKKDAQEKTTEISS*IFISKH
Trigger: GTGTTTTGAAATGAAGATCAATGAGGAAATCTCCGT...TGTCTTTTCCTGTGCATCTTTCTTTCCCTTAACATCCATACTTAAACTTGTAGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108401.3
CDS GCA 72 bp CGCCGCCGCCCCCACGGCCTCGGAAGCCTCCGCCTCTaGTGTCAAAGCGCTTCTCAGGGGGCGGGCCGGCCT +
Preference number: 6 (lower is better)
Translates to: RRRPHGLGSLRL*CQSASQGAGRP
Trigger: AGGCCGGCCCGCCCCCTGAGAAGCGCTTTGACAGCAGAGGCGGAGGCTTCCGAGGCCGTGGGGGCGGCGGCG
76% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS CCA 72 bp CGGTTGCCTCCAGGAGGGCCTCGGTTGTCATACCGCTaGAAACCGCCGCCGCCCCCACGGCCTCGGAAGCCT +
Preference number: 6 (lower is better)
Translates to: RLPPGGPRLSYR*KPPPPPRPRKP
Trigger: AGGCTTCCGAGGCCGTGGGGGCGGCGGCGGTTTCCAGCGGTATGACAACCGAGGCCCTCCTGGAGGCAACCG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS CAA 72 bp TGGAAGCCTCCTCGGTTGCCTCCAGGAGGGCCTCGGTaGTCATACCGCTGGAAACCGCCGCCGCCCCCACGG +
Preference number: 6 (lower is better)
Translates to: WKPPRLPPGGPR*SYRWKPPPPPR
Trigger: CCGTGGGGGCGGCGGCGGTTTCCAGCGGTATGACAACCGAGGCCCTCCTGGAGGCAACCGAGGAGGCTTCCA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS CAA 90 bp CCACCGCTGCCACCACCACCTCCCCGGTTCTGGAAGCCTCCTCGGTaGCCTCCAGGAGGGCCTCGGTTGTCATACCGCTGGAAACCGCCG +
Preference number: 6 (lower is better)
Translates to: PPLPPPPPRFWKPPR*PPGGPRLSYRWKPP
Trigger: CGGCGGTTTCCAGCGGTATGACAACCGAGGCCCTCCTGGAGGCAACCGAGGAGGCTTCCAGAACCGGGGAGGTGGTGGTGGCAGCGGTGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS GCA 72 bp TCGGCCTTCAGGCCGCGAGTGTCCAGGCCGCGGCGCTaGAGCTCCTCGCGAAGTTCGTTCACCTTCAGGCGA +
Preference number: 6 (lower is better)
Translates to: SAFRPRVSRPRR*SSSRSSFTFRR
Trigger: TCGCCTGAAGGTGAACGAACTTCGCGAGGAGCTGCAGCGCCGCGGCCTGGACACTCGCGGCCTGAAGGCCGA
68% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108401.3
ENSMUST00000206832.2
CDS CAA 72 bp TTCTCAGGGGGCGGGCCGGCCTTCCGGCCTTCCTCGTaGTATTGCCTCACCAGCTTGTCTGCCTCCTCCCGC +
Preference number: 6 (lower is better)
Translates to: FSGGGPAFRPSS*YCLTSLSASSR
Trigger: GCGGGAGGAGGCAGACAAGCTGGTGAGGCAATACAACGAGGAAGGCCGGAAGGCCGGCCCGCCCCCTGAGAA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS GCA 72 bp CACCACCACCTCCCCGGTTCTGGAAGCCTCCTCGGTTaGCTCCAGGAGGGCCTCGGTTGTCATACCGCTGGA +
Preference number: 6 (lower is better)
Translates to: HHHLPGSGSLLG*LQEGLGCHTAG
Trigger: TCCAGCGGTATGACAACCGAGGCCCTCCTGGAGGCAACCGAGGAGGCTTCCAGAACCGGGGAGGTGGTGGTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS CAA 90 bp TCAAAGCGCTTCTCAGGGGGCGGGCCGGCCTTCCGGCCTTCCTCGTaGTATTGCCTCACCAGCTTGTCTGCCTCCTCCCGCTGGAGCTCA +
Preference number: 6 (lower is better)
Translates to: SKRFSGGGPAFRPSS*YCLTSLSASSRWSS
Trigger: TGAGCTCCAGCGGGAGGAGGCAGACAAGCTGGTGAGGCAATACAACGAGGAAGGCCGGAAGGCCGGCCCGCCCCCTGAGAAGCGCTTTGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS CAA 90 bp CGGAGGTGGAGGTGGTGGGGCTGTGTAGCCCTGGGTGTAGCCTCCTaGGTTGTAGGGTGGCTGGCTGTAACTCGGCTGTGGAGGGGTGTA +
Preference number: 6 (lower is better)
Translates to: RRWRWWGCVALGVAS*VVGWLAVTRLWRGV
Trigger: TACACCCCTCCACAGCCGAGTTACAGCCAGCCACCCTACAACCAAGGAGGCTACACCCAGGGCTACACAGCCCCACCACCTCCACCTCCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS CAA 90 bp GGCGGGCCGGCCTTCCGGCCTTCCTCGTTGTATTGCCTCACCAGCTaGTCTGCCTCCTCCCGCTGGAGCTCAATGAACAGAACCTCATCC +
Preference number: 6 (lower is better)
Translates to: GGPAFRPSSLYCLTS*SASSRWSSMNRTSS
Trigger: GGATGAGGTTCTGTTCATTGAGCTCCAGCGGGAGGAGGCAGACAAGCTGGTGAGGCAATACAACGAGGAAGGCCGGAAGGCCGGCCCGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS CAA 90 bp CGGAGGGTTCCGAGCAGGGCTATAGCTAGGTGGTGGTGGTGGTTGTaGTGGTGGTGGTTGTGGTGGCGGTGGCTGTTGTGGTGGTGGCTG +
Preference number: 6 (lower is better)
Translates to: RRVPSRAIARWWWWL*WWWLWWRWLLWWWL
Trigger: CAGCCACCACCACAACAGCCACCGCCACCACAACCACCACCACAACAACCACCACCACCACCTAGCTATAGCCCTGCTCGGAACCCTCCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS CAA 90 bp TCCCGGAGGGTTCCGAGCAGGGCTATAGCTAGGTGGTGGTGGTGGTaGTTGTGGTGGTGGTTGTGGTGGCGGTGGCTGTTGTGGTGGTGG +
Preference number: 6 (lower is better)
Translates to: SRRVPSRAIARWWWW*LWWWLWWRWLLWWW
Trigger: CCACCACCACAACAGCCACCGCCACCACAACCACCACCACAACAACCACCACCACCACCTAGCTATAGCCCTGCTCGGAACCCTCCGGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS CCA 72 bp CGGAGGGTTCCGAGCAGGGCTATAGCTAGGTGGTGGTaGTGGTTGTTGTGGTGGTGGTTGTGGTGGCGGTGG +
Preference number: 6 (lower is better)
Translates to: RRVPSRAIARWW*WLLWWWLWWRW
Trigger: CCACCGCCACCACAACCACCACCACAACAACCACCACCACCACCTAGCTATAGCCCTGCTCGGAACCCTCCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS CCA 72 bp TCCCGGAGGGTTCCGAGCAGGGCTATAGCTAGGTGGTaGTGGTGGTTGTTGTGGTGGTGGTTGTGGTGGCGG +
Preference number: 6 (lower is better)
Translates to: SRRVPSRAIARW*WWLLWWWLWWR
Trigger: CCGCCACCACAACCACCACCACAACAACCACCACCACCACCTAGCTATAGCCCTGCTCGGAACCCTCCGGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS CCA 72 bp GGCTCCCGGAGGGTTCCGAGCAGGGCTATAGCTAGGTaGTGGTGGTGGTTGTTGTGGTGGTGGTTGTGGTGG +
Preference number: 6 (lower is better)
Translates to: GSRRVPSRAIAR*WWWLLWWWLWW
Trigger: CCACCACAACCACCACCACAACAACCACCACCACCACCTAGCTATAGCCCTGCTCGGAACCCTCCGGGAGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS CAA 72 bp AGGTGGTGGGGCTGTGTAGCCCTGGGTGTAGCCTCCTaGGTTGTAGGGTGGCTGGCTGTAACTCGGCTGTGG +
Preference number: 6 (lower is better)
Translates to: RWWGCVALGVAS*VVGWLAVTRLW
Trigger: CCACAGCCGAGTTACAGCCAGCCACCCTACAACCAAGGAGGCTACACCCAGGGCTACACAGCCCCACCACCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS GCA 72 bp CCAATGGTGCCCCGTATCCGCTCACTGAGGGGGAGGTaGTGGATGAATGTGAACCCTGGGAGGACAGAGCAG +
Preference number: 6 (lower is better)
Translates to: PMVPRIRSLRGR*WMNVNPGRTEQ
Trigger: CTGCTCTGTCCTCCCAGGGTTCACATTCATCCAGCACCTCCCCCTCAGTGAGCGGATACGGGGCACCATTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS CCA 72 bp AGGGTTCCGAGCAGGGCTATAGCTAGGTGGTGGTGGTaGTTGTTGTGGTGGTGGTTGTGGTGGCGGTGGCTG +
Preference number: 6 (lower is better)
Translates to: RVPSRAIARWWW*LLWWWLWWRWL
Trigger: CAGCCACCGCCACCACAACCACCACCACAACAACCACCACCACCACCTAGCTATAGCCCTGCTCGGAACCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS CCA 72 bp TGTGTAGCCCTGGGTGTAGCCTCCTTGGTTGTAGGGTaGCTGGCTGTAACTCGGCTGTGGAGGGGTGTAGCT +
Preference number: 6 (lower is better)
Translates to: CVALGVASLVVG*LAVTRLWRGVA
Trigger: AGCTACACCCCTCCACAGCCGAGTTACAGCCAGCCACCCTACAACCAAGGAGGCTACACCCAGGGCTACACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS CAA 90 bp CCAGCAGCAGGCAGGCCTACCATCATCAGAATCTCACACTCTGCTTaGCTCTTTGGCCCAATGGTGCCCCGTATCCGCTCACTGAGGGGG +
Preference number: 6 (lower is better)
Translates to: PAAGRPTIIRISHSA*LFGPMVPRIRSLRG
Trigger: CCCCCTCAGTGAGCGGATACGGGGCACCATTGGGCCAAAGAGCAAAGCAGAGTGTGAGATTCTGATGATGGTAGGCCTGCCTGCTGCTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS TCA 72 bp ACGCCCTCTTCTGACCCCATAGCTGGCACGGGCTCCTaGCCACAGGTATGCAAAGCCCTCAATCGTCAATGG +
Preference number: 6 (lower is better)
Translates to: TPSSDPIAGTGS*PQVCKALNRQW
Trigger: CCATTGACGATTGAGGGCTTTGCATACCTGTGGTCAGGAGCCCGTGCCAGCTATGGGGTCAGAAGAGGGCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043765.14
ENSMUST00000108401.3
ENSMUST00000206832.2
CDS GCA 72 bp CCGGCCTTCCTCGTTGTATTGCCTCACCAGCTTGTCTaGCTCCTCCCGCTGGAGCTCAATGAACAGAACCTC +
Preference number: 6 (lower is better)
Translates to: PAFLVVLPHQLV*LLPLELNEQNL
Trigger: GAGGTTCTGTTCATTGAGCTCCAGCGGGAGGAGGCAGACAAGCTGGTGAGGCAATACAACGAGGAAGGCCGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS CCA 72 bp TCCACTGCTGGGCATACTGCTGATACTGGTTATAGCTaGGCTGAGGGTAGGTCTGGGCAGTTGGGGGTGGTG +
Preference number: 6 (lower is better)
Translates to: STAGHTADTGYS*AEGRSGQLGVV
Trigger: CACCACCCCCAACTGCCCAGACCTACCCTCAGCCCAGCTATAACCAGTATCAGCAGTATGCCCAGCAGTGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS CAA 72 bp GCCTTCCGGCCTTCCTCGTTGTATTGCCTCACCAGCTaGTCTGCCTCCTCCCGCTGGAGCTCAATGAACAGA +
Preference number: 6 (lower is better)
Translates to: AFRPSSLYCLTS*SASSRWSSMNR
Trigger: TCTGTTCATTGAGCTCCAGCGGGAGGAGGCAGACAAGCTGGTGAGGCAATACAACGAGGAAGGCCGGAAGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS CAA 90 bp CGCTGCCTCCGCAGGCCCATCACCCGCATCTTATCCATGATGGCATaGGTACCCAGAATGTTGTACTTCTTGGAAGGGTTGGAGGCAGCG +
Preference number: 6 (lower is better)
Translates to: RCLRRPITRILSMMA*VPRMLYFLEGLEAA
Trigger: CGCTGCCTCCAACCCTTCCAAGAAGTACAACATTCTGGGTACCAATGCCATCATGGATAAGATGCGGGTGATGGGCCTGCGGAGGCAGCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS CAA 90 bp TTGTGGTGGTGGTTGTGGTGGCGGTGGCTGTTGTGGTGGTGGCTGTaGCTGAGGAGCCCGGTTATAGTTGCCTCGGTTGTTGGAGTTGTT +
Preference number: 6 (lower is better)
Translates to: LWWWLWWRWLLWWWL*LRSPVIVASVVGVV
Trigger: AACAACTCCAACAACCGAGGCAACTATAACCGGGCTCCTCAGCAACAGCCACCACCACAACAGCCACCGCCACCACAACCACCACCACAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS CCA 72 bp CTGCAAGAGTCCAAGGACCAGCCAATACGGACAACGTaGGGGTCGGGCTCTGTAGATGGAAGATGCTTCACG +
Preference number: 6 (lower is better)
Translates to: LQESKDQPIRTT*GSGSVDGRCFT
Trigger: CGTGAAGCATCTTCCATCTACAGAGCCCGACCCCCACGTTGTCCGTATTGGCTGGTCCTTGGACTCTTGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043765.14
ENSMUST00000108401.3
ENSMUST00000206832.2
CDS CCA 72 bp GCCCGAGTAGCCTCCATAGTCGTAGTTCCCGTAGTATaGCGGCCACTGGCTCTGGTTCTGATAGTACTGGCT +
Preference number: 6 (lower is better)
Translates to: ARVASIVVVPVV*RPLALVLIVLA
Trigger: AGCCAGTACTATCAGAACCAGAGCCAGTGGCCGCCATACTACGGGAACTACGACTATGGAGGCTACTCGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS GCA 72 bp GCAGGCCTACCATCATCAGAATCTCACACTCTGCTTTaGTCTTTGGCCCAATGGTGCCCCGTATCCGCTCAC +
Preference number: 6 (lower is better)
Translates to: AGLPSSESHTLL*SLAQWCPVSAH
Trigger: GTGAGCGGATACGGGGCACCATTGGGCCAAAGAGCAAAGCAGAGTGTGAGATTCTGATGATGGTAGGCCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS CAA 72 bp GGCAGGCCTACCATCATCAGAATCTCACACTCTGCTTaGCTCTTTGGCCCAATGGTGCCCCGTATCCGCTCA +
Preference number: 6 (lower is better)
Translates to: GRPTIIRISHSA*LFGPMVPRIRS
Trigger: TGAGCGGATACGGGGCACCATTGGGCCAAAGAGCAAAGCAGAGTGTGAGATTCTGATGATGGTAGGCCTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS CCA 72 bp TACCATCATCAGAATCTCACACTCTGCTTTGCTCTTTaGCCCAATGGTGCCCCGTATCCGCTCACTGAGGGG +
Preference number: 6 (lower is better)
Translates to: YHHQNLTLCFAL*PNGAPYPLTEG
Trigger: CCCCTCAGTGAGCGGATACGGGGCACCATTGGGCCAAAGAGCAAAGCAGAGTGTGAGATTCTGATGATGGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS CAA 90 bp TCCATGATGGCATTGGTACCCAGAATGTTGTACTTCTTGGAAGGGTaGGAGGCAGCGTGTTTGATGGCCCACGTGGTCTTGCCAGCAGCA +
Preference number: 6 (lower is better)
Translates to: SMMALVPRMLYFLEG*EAACLMAHVVLPAA
Trigger: TGCTGCTGGCAAGACCACGTGGGCCATCAAACACGCTGCCTCCAACCCTTCCAAGAAGTACAACATTCTGGGTACCAATGCCATCATGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS GCA 72 bp GTGGTGGTGGCTGTTGCTGAGGAGCCCGGTTATAGTTaGCTCGGTTGTTGGAGTTGTTGTTATCCCTGTTGT +
Preference number: 6 (lower is better)
Translates to: VVVAVAEEPGYS*LGCWSCCYPCC
Trigger: ACAACAGGGATAACAACAACTCCAACAACCGAGGCAACTATAACCGGGCTCCTCAGCAACAGCCACCACCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS CAA 90 bp GGGACATCCTTCCCTTCTTCGTCCGTTCGCTTTACTGTGCGGTCTTaGAGGTCCTCATCAGTTGGACAGATTACAATAGCTTTCCGCTGG +
Preference number: 6 (lower is better)
Translates to: GTSFPSSSVRFTVRS*RSSSVGQITIAFRW
Trigger: CCAGCGGAAAGCTATTGTAATCTGTCCAACTGATGAGGACCTCAAAGACCGCACAGTAAAGCGAACGGACGAAGAAGGGAAGGATGTCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS CAA 90 bp GTTGTTGGAGTTGTTGTTATCCCTGTTGTTATTACCCCAGCGGTTTaGGTTGTAGCCACCACCTCCGCTGCGGTTGAAACCTCCTCGGTA +
Preference number: 6 (lower is better)
Translates to: VVGVVVIPVVITPAV*VVATTSAAVETSSV
Trigger: TACCGAGGAGGTTTCAACCGCAGCGGAGGTGGTGGCTACAACCAAAACCGCTGGGGTAATAACAACAGGGATAACAACAACTCCAACAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS CCA 72 bp CGGCCTCGATTCTCTTCAAAGGGCCTCTTTCGATTCTaGAATTGTGGTCTGTCTGTCTTGAGCTGTGAGGCT +
Preference number: 6 (lower is better)
Translates to: RPRFSSKGLFRF*NCGLSVLSCEA
Trigger: AGCCTCACAGCTCAAGACAGACAGACCACAATTCCAGAATCGAAAGAGGCCCTTTGAAGAGAATCGAGGCCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043765.14
ENSMUST00000108401.3
ENSMUST00000206832.2
CDS CAA 72 bp TCCATGATGGCATTGGTACCCAGAATGTTGTACTTCTaGGAAGGGTTGGAGGCAGCGTGTTTGATGGCCCAC +
Preference number: 6 (lower is better)
Translates to: SMMALVPRMLYF*EGLEAACLMAH
Trigger: GTGGGCCATCAAACACGCTGCCTCCAACCCTTCCAAGAAGTACAACATTCTGGGTACCAATGCCATCATGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS CAA 72 bp GTTGTTGTTATCCCTGTTGTTATTACCCCAGCGGTTTaGGTTGTAGCCACCACCTCCGCTGCGGTTGAAACC +
Preference number: 6 (lower is better)
Translates to: VVVIPVVITPAV*VVATTSAAVET
Trigger: GGTTTCAACCGCAGCGGAGGTGGTGGCTACAACCAAAACCGCTGGGGTAATAACAACAGGGATAACAACAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS TCA 72 bp TCAATGGATAGCCACTACTCCGGTCTCGGGCCACTTTaGAGTGCAGGTCACAGTTATATGTGTCAATGGCCA +
Preference number: 6 (lower is better)
Translates to: SMDSHYSGLGPL*SAGHSYMCQWP
Trigger: TGGCCATTGACACATATAACTGTGACCTGCACTTCAAAGTGGCCCGAGACCGGAGTAGTGGCTATCCATTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043765.14
ENSMUST00000108401.3
ENSMUST00000206832.2
CDS GCA 72 bp AACCATAGGAAAAAGGCTCTTCACCTAGCTGAGTGCTaGAAGAGTCCAAGGACCAGCCAATACGGACAACGT +
Preference number: 6 (lower is better)
Translates to: NHRKKALHLAEC*KSPRTSQYGQR
Trigger: ACGTTGTCCGTATTGGCTGGTCCTTGGACTCTTGCAGCACTCAGCTAGGTGAAGAGCCTTTTTCCTATGGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043765.14
ENSMUST00000108401.3
ENSMUST00000206832.2
CDS CCA 72 bp GTTGCTGAGGAGCCCGGTTATAGTTGCCTCGGTTGTTaGAGTTGTTGTTATCCCTGTTGTTATTACCCCAGC +
Preference number: 6 (lower is better)
Translates to: VAEEPGYSCLGC*SCCYPCCYYPS
Trigger: GCTGGGGTAATAACAACAGGGATAACAACAACTCCAACAACCGAGGCAACTATAACCGGGCTCCTCAGCAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS GCA 72 bp CATAACCATAGGAAAAAGGCTCTTCACCTAGCTGAGTaGTGCAAGAGTCCAAGGACCAGCCAATACGGACAA +
Preference number: 6 (lower is better)
Translates to: HNHRKKALHLAE*CKSPRTSQYGQ
Trigger: TTGTCCGTATTGGCTGGTCCTTGGACTCTTGCAGCACTCAGCTAGGTGAAGAGCCTTTTTCCTATGGTTATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043765.14
ENSMUST00000108401.3
ENSMUST00000206832.2
CDS CAA 90 bp CCCCCTAAGGCCTCTTTCTGGATTCGGAAGGCAATGCCCATCCACTaGCCATTCTTGGTAAAAGAAAGCTCCACATCATTTCCACATTCA +
Preference number: 6 (lower is better)
Translates to: PPKASFWIRKAMPIH*PFLVKESSTSFPHS
Trigger: TGAATGTGGAAATGATGTGGAGCTTTCTTTTACCAAGAATGGCAAGTGGATGGGCATTGCCTTCCGAATCCAGAAAGAGGCCTTAGGGGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS CAA 72 bp TTCCCTTCTTCGTCCGTTCGCTTTACTGTGCGGTCTTaGAGGTCCTCATCAGTTGGACAGATTACAATAGCT +
Preference number: 6 (lower is better)
Translates to: FPSSSVRFTVRS*RSSSVGQITIA
Trigger: AGCTATTGTAATCTGTCCAACTGATGAGGACCTCAAAGACCGCACAGTAAAGCGAACGGACGAAGAAGGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS CAA 72 bp GCCTCTTTCTGGATTCGGAAGGCAATGCCCATCCACTaGCCATTCTTGGTAAAAGAAAGCTCCACATCATTT +
Preference number: 6 (lower is better)
Translates to: ASFWIRKAMPIH*PFLVKESSTSF
Trigger: AAATGATGTGGAGCTTTCTTTTACCAAGAATGGCAAGTGGATGGGCATTGCCTTCCGAATCCAGAAAGAGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS CAA 72 bp TGGATTCGGAAGGCAATGCCCATCCACTTGCCATTCTaGGTAAAAGAAAGCTCCACATCATTTCCACATTCA +
Preference number: 6 (lower is better)
Translates to: WIRKAMPIHLPF*VKESSTSFPHS
Trigger: TGAATGTGGAAATGATGTGGAGCTTTCTTTTACCAAGAATGGCAAGTGGATGGGCATTGCCTTCCGAATCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043765.14
ENSMUST00000206832.2
CDS CAA 72 bp CTCATTTTCTTGCTTGATGACTGGTGTCTCGTAGAATaGGTTCTGTCTGGTAATATTGTCCATGACATAATG +
Preference number: 6 (lower is better)
Translates to: LIFLLDDWCLVE*VLSGNIVHDIM
Trigger: CATTATGTCATGGACAATATTACCAGACAGAACCAATTCTACGAGACACCAGTCATCAAGCAAGAAAATGAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108401.3
ENSMUST00000206832.2