Pregenerated sensors for HNRNPL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000015165Ensembl transcript IDs: ENSMUST00000038572.15, ENSMUST00000172529.8, ENSMUST00000174477.8, ENSMUST00000174548.8, ENSMUST00000174882.8
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | AACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATaGAGTCTTCCTTCCCAGCATCCAATTAGGAGGCGT | + |
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Preference number: 3 (lower is better) Translates to: NSIKERNIFLLG*SLPSQHPIRRR Trigger: ACGCCTCCTAATTGGATGCTGGGAAGGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174882.8 |
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| CDS-3UTR CCA 90 bp | CAACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCTTCCCAGGGGCCATAGCGACTTaGGCCCCGGCGGTGACCCCC | + |
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Preference number: 4 (lower is better) Translates to: QQHKGKEHFPARMESSFPGAIAT*APAVTP Trigger: GGGGGTCACCGCCGGGGCCCAAGTCGCTATGGCCCC...TGGGAAGGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000038572.15 ENSMUST00000172529.8 ENSMUST00000174477.8 ENSMUST00000174548.8 |
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| CDS-3UTR CCA 90 bp | ATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCTTCCCAGCATCCAGGGGCCATAGCGACTTaGGCCCCGGCGGTGACCCCC | + |
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Preference number: 4 (lower is better) Translates to: IKERNIFLLGWSLPSQHPGAIAT*APAVTP Trigger: GGGGGTCACCGCCGGGGCCCAAGTCGCTATGGCCCC...TGGATGCTGGGAAGGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000038572.15 ENSMUST00000172529.8 ENSMUST00000174477.8 ENSMUST00000174548.8 |
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| CDS-3UTR CCA 90 bp | ACAAACCAACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCGGGGCCATAGCGACTTaGGCCCCGGCGGTGACCCCC | + |
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Preference number: 4 (lower is better) Translates to: TNQQHKGKEHFPARMESSGAIAT*APAVTP Trigger: GGGGGTCACCGCCGGGGCCCAAGTCGCTATGGCCCC...GGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTTGGTTTGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000038572.15 ENSMUST00000172529.8 ENSMUST00000174477.8 ENSMUST00000174548.8 |
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| CDS-3UTR GCA 90 bp | ATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCTTCCCAGCATCCATGCTCGTCCGGCTGCTaGCTCTGCTCGAGCCGCCGA | + |
|
Preference number: 4 (lower is better) Translates to: IKERNIFLLGWSLPSQHPCSSGC*LCSSRR Trigger: TCGGCGGCTCGAGCAGAGGCAGCAGCCGGACGAGCA...TGGATGCTGGGAAGGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038572.15 ENSMUST00000174477.8 ENSMUST00000174548.8 |
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| CDS-3UTR CCA 90 bp | ATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCTTCCCAGCATCCACCGCCGCCTCCGTGCTaGTCGCCGGCGTTTTCAGTC | + |
|
Preference number: 4 (lower is better) Translates to: IKERNIFLLGWSLPSQHPPPPPC*SPAFSV Trigger: GACTGAAAACGCCGGCGACCAGCACGGAGGCGGCGG...TGGATGCTGGGAAGGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000038572.15 ENSMUST00000174477.8 ENSMUST00000174548.8 |
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| CDS-3UTR CCA 90 bp | CAAACCAACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCTCCGCCGCCTCCGTGCTaGTCGCCGGCGTTTTCAGTC | + |
|
Preference number: 4 (lower is better) Translates to: QTNSIKERNIFLLGWSLPPPPPC*SPAFSV Trigger: GACTGAAAACGCCGGCGACCAGCACGGAGGCGGCGG...AGGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTTGGTTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000038572.15 ENSMUST00000174477.8 ENSMUST00000174548.8 |
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| CDS-3UTR TCA 90 bp | ATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCTTCCCAGCATCCAGAGAGGGAGGACGGGTaGGAATTTTCGCGGCGGACG | + |
|
Preference number: 4 (lower is better) Translates to: IKERNIFLLGWSLPSQHPEREDG*EFSRRT Trigger: CGTCCGCCGCGAAAATTCTCACCCGTCCTCCCTCTC...TGGATGCTGGGAAGGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174477.8 |
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| CDS-3UTR GCA 90 bp | AACCAAACAAACCAACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTGCTCGTCCGGCTGCTaGCTCTGCTCGAGCCGCCGA | + |
|
Preference number: 4 (lower is better) Translates to: NQTNQQHKGKEHFPARMECSSGC*LCSSRR Trigger: TCGGCGGCTCGAGCAGAGGCAGCAGCCGGACGAGCA...CTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTTGGTTTGTTTGGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038572.15 ENSMUST00000174477.8 ENSMUST00000174548.8 |
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| CDS-3UTR CCA 90 bp | AACCAAACAAACCAACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGCCGCCGCCTCCGTGCTaGTCGCCGGCGTTTTCAGTC | + |
|
Preference number: 4 (lower is better) Translates to: NQTNQQHKGKEHFPARMEPPPPC*SPAFSV Trigger: GACTGAAAACGCCGGCGACCAGCACGGAGGCGGCGG...CTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTTGGTTTGTTTGGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000038572.15 ENSMUST00000174477.8 ENSMUST00000174548.8 |
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| CDS-3UTR CCA 90 bp | CAACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCTTCCCAACCATGGGGCCCTCCTaGGGGGTGGGAAGGAAAGAG | + |
|
Preference number: 4 (lower is better) Translates to: QQHKGKEHFPARMESSFPTMGPS*GVGRKE Trigger: CTCTTTCCTTCCCACCCCCCAGGAGGGCCCCATGGT...TGGGAAGGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000174477.8 |
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| CDS-3UTR GCA 90 bp | AACCAAACAAACCAACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGCGGAGGGGAACCCCCTaGCCTCACCATATTCTGCGG | + |
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Preference number: 4 (lower is better) Translates to: NQTNQQHKGKEHFPARMERRGTP*PHHILR Trigger: CCGCAGAATATGGTGAGGGCAGGGGGTTCCCCTCCG...CTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTTGGTTTGTTTGGTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000174477.8 |
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| CDS-3UTR GCA 90 bp | ATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCTTCCCAGCATCCAGCGCGCTGGGCACTTTaGACAGAATCAAACTCCACC | + |
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Preference number: 4 (lower is better) Translates to: IKERNIFLLGWSLPSQHPARWAL*TESNST Trigger: GGTGGAGTTTGATTCTGTGCAAAGTGCCCAGCGCGC...TGGATGCTGGGAAGGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000038572.15 ENSMUST00000172529.8 ENSMUST00000174477.8 ENSMUST00000174548.8 ENSMUST00000174882.8 |
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| CDS-3UTR GCA 90 bp | CAAACCAACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCTGCGCGCTGGGCACTTTaGACAGAATCAAACTCCACC | + |
|
Preference number: 4 (lower is better) Translates to: QTNSIKERNIFLLGWSLPARWAL*TESNST Trigger: GGTGGAGTTTGATTCTGTGCAAAGTGCCCAGCGCGC...AGGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTTGGTTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000038572.15 ENSMUST00000172529.8 ENSMUST00000174477.8 ENSMUST00000174548.8 ENSMUST00000174882.8 |
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| CDS-3UTR GCA 90 bp | ACAAACCAACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCGCGCGCTGGGCACTTTaGACAGAATCAAACTCCACC | + |
|
Preference number: 4 (lower is better) Translates to: TNQQHKGKEHFPARMESSARWAL*TESNST Trigger: GGTGGAGTTTGATTCTGTGCAAAGTGCCCAGCGCGC...GGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTTGGTTTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000038572.15 ENSMUST00000172529.8 ENSMUST00000174477.8 ENSMUST00000174548.8 ENSMUST00000174882.8 |
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| CDS-3UTR TCA 90 bp | ATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCTTCCCAGCATCCAAACTCCACCATAGCCTaGACTCCGTTCTTCCGGAAA | + |
|
Preference number: 4 (lower is better) Translates to: IKERNIFLLGWSLPSQHPNSTIA*TPFFRK Trigger: TTTCCGGAAGAACGGAGTTCAGGCTATGGTGGAGTT...TGGATGCTGGGAAGGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000038572.15 ENSMUST00000172529.8 ENSMUST00000174477.8 ENSMUST00000174548.8 ENSMUST00000174882.8 |
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| CDS-3UTR TCA 90 bp | CAACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCTTCCCAAACTCCACCATAGCCTaGACTCCGTTCTTCCGGAAA | + |
|
Preference number: 4 (lower is better) Translates to: QQHKGKEHFPARMESSFPNSTIA*TPFFRK Trigger: TTTCCGGAAGAACGGAGTTCAGGCTATGGTGGAGTT...TGGGAAGGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000038572.15 ENSMUST00000172529.8 ENSMUST00000174477.8 ENSMUST00000174548.8 ENSMUST00000174882.8 |
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| CDS-3UTR GCA 90 bp | ATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCTTCCCAGCATCCAAACTCTACCAGTGCCTaGCTCTTCTTTGGCATCACC | + |
|
Preference number: 4 (lower is better) Translates to: IKERNIFLLGWSLPSQHPNSTSA*LFFGIT Trigger: GGTGATGCCAAAGAAGAGGCAGGCACTGGTAGAGTT...TGGATGCTGGGAAGGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000038572.15 ENSMUST00000174477.8 ENSMUST00000174548.8 ENSMUST00000174882.8 |
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| CDS-3UTR GCA 90 bp | CAACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCTTCCCATTAGGAGGCGTGCTGTaGAGTGGAGAAGCACAACTT | + |
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Preference number: 4 (lower is better) Translates to: QQHKGKEHFPARMESSFPLGGVL*SGEAQL Trigger: AAGTTGTGCTTCTCCACTGCACAGCACGCCTCCTAA...TGGGAAGGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000038572.15 ENSMUST00000172529.8 ENSMUST00000174477.8 ENSMUST00000174548.8 |
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| CDS-3UTR GCA 90 bp | ATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCTTCCCAGCATCCATTAGGAGGCGTGCTGTaGAGTGGAGAAGCACAACTT | + |
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Preference number: 4 (lower is better) Translates to: IKERNIFLLGWSLPSQHPLGGVL*SGEAQL Trigger: AAGTTGTGCTTCTCCACTGCACAGCACGCCTCCTAA...TGGATGCTGGGAAGGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000038572.15 ENSMUST00000172529.8 ENSMUST00000174477.8 ENSMUST00000174548.8 |
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| CDS-3UTR CCA 90 bp | ATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCTTCCCAGCATCCATGCCTGCCTCTTCTTTaGCATCACCACCACATAGCT | + |
|
Preference number: 4 (lower is better) Translates to: IKERNIFLLGWSLPSQHPCLPLL*HHHHIA Trigger: AGCTATGTGGTGGTGATGCCAAAGAAGAGGCAGGCA...TGGATGCTGGGAAGGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000038572.15 ENSMUST00000174477.8 ENSMUST00000174548.8 ENSMUST00000174882.8 |
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| CDS-3UTR TCA 90 bp | ACAAACCAACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCAACTCCACCATAGCCTaGACTCCGTTCTTCCGGAAA | + |
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Preference number: 4 (lower is better) Translates to: TNQQHKGKEHFPARMESSNSTIA*TPFFRK Trigger: TTTCCGGAAGAACGGAGTTCAGGCTATGGTGGAGTT...GGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTTGGTTTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000038572.15 ENSMUST00000172529.8 ENSMUST00000174477.8 ENSMUST00000174548.8 ENSMUST00000174882.8 |
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| CDS-3UTR GCA 90 bp | CAAACCAACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCTAACTCTACCAGTGCCTaGCTCTTCTTTGGCATCACC | + |
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Preference number: 4 (lower is better) Translates to: QTNSIKERNIFLLGWSLPNSTSA*LFFGIT Trigger: GGTGATGCCAAAGAAGAGGCAGGCACTGGTAGAGTT...AGGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTTGGTTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000038572.15 ENSMUST00000174477.8 ENSMUST00000174548.8 ENSMUST00000174882.8 |
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| CDS-3UTR GCA 90 bp | CAACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCTTCCCAGGCATAATGGCTGGTTaGTTGGAGACACAGACATTC | + |
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Preference number: 4 (lower is better) Translates to: QQHKGKEHFPARMESSFPGIMAG*LETQTF Trigger: GAATGTCTGTGTCTCCAAGCAACCAGCCATTATGCC...TGGGAAGGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000038572.15 ENSMUST00000172529.8 ENSMUST00000174477.8 ENSMUST00000174548.8 |
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| CDS-3UTR GCA 90 bp | ATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCTTCCCAGCATCCAGGCATAATGGCTGGTTaGTTGGAGACACAGACATTC | + |
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Preference number: 4 (lower is better) Translates to: IKERNIFLLGWSLPSQHPGIMAG*LETQTF Trigger: GAATGTCTGTGTCTCCAAGCAACCAGCCATTATGCC...TGGATGCTGGGAAGGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000038572.15 ENSMUST00000172529.8 ENSMUST00000174477.8 ENSMUST00000174548.8 |
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| CDS-3UTR GCA 90 bp | ATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCTTCCCAGCATCCAGGAGCATTGAAGAAGTaGAGTACATTGCTAGGGTGC | + |
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Preference number: 4 (lower is better) Translates to: IKERNIFLLGWSLPSQHPGALKK*STLLGC Trigger: GCACCCTAGCAATGTACTGCACTTCTTCAATGCTCC...TGGATGCTGGGAAGGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000038572.15 ENSMUST00000172529.8 ENSMUST00000174477.8 ENSMUST00000174548.8 |
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| CDS-3UTR GCA 90 bp | ACAAACCAACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCTTAGGAGGCGTGCTGTaGAGTGGAGAAGCACAACTT | + |
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Preference number: 4 (lower is better) Translates to: TNQQHKGKEHFPARMESSLGGVL*SGEAQL Trigger: AAGTTGTGCTTCTCCACTGCACAGCACGCCTCCTAA...GGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTTGGTTTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000038572.15 ENSMUST00000172529.8 ENSMUST00000174477.8 ENSMUST00000174548.8 |
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| CDS-3UTR GCA 90 bp | ACAAACCAACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCCCATCAAACATACACTaGGACCCTTGTCCACTGAGG | + |
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Preference number: 4 (lower is better) Translates to: TNQQHKGKEHFPARMESSPSNIH*DPCPLR Trigger: CCTCAGTGGACAAGGGTCGCAGTGTATGTTTGATGG...GGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTTGGTTTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174882.8 |
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| CDS-3UTR CCA 90 bp | CAAACCAACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCTTGCCTGCCTCTTCTTTaGCATCACCACCACATAGCT | + |
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Preference number: 4 (lower is better) Translates to: QTNSIKERNIFLLGWSLPCLPLL*HHHHIA Trigger: AGCTATGTGGTGGTGATGCCAAAGAAGAGGCAGGCA...AGGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTTGGTTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000038572.15 ENSMUST00000174477.8 ENSMUST00000174548.8 ENSMUST00000174882.8 |
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| CDS-3UTR GCA 90 bp | AACCAAACAAACCAACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGAACTCTACCAGTGCCTaGCTCTTCTTTGGCATCACC | + |
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Preference number: 4 (lower is better) Translates to: NQTNQQHKGKEHFPARMENSTSA*LFFGIT Trigger: GGTGATGCCAAAGAAGAGGCAGGCACTGGTAGAGTT...CTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTTGGTTTGTTTGGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000038572.15 ENSMUST00000174477.8 ENSMUST00000174548.8 ENSMUST00000174882.8 |
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| CDS-3UTR GCA 90 bp | ATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCTTCCCAGCATCCATTCAAACTCTACCAGTaGCTGCCTCTTCTTTGGCAT | + |
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Preference number: 4 (lower is better) Translates to: IKERNIFLLGWSLPSQHPFKLYQ*LPLLWH Trigger: ATGCCAAAGAAGAGGCAGGCACTGGTAGAGTTTGAA...TGGATGCTGGGAAGGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000038572.15 ENSMUST00000172529.8 ENSMUST00000174477.8 ENSMUST00000174548.8 ENSMUST00000174882.8 |
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| CDS-3UTR GCA 90 bp | CAACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCTTCCCATTCAAACTCTACCAGTaGCTGCCTCTTCTTTGGCAT | + |
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Preference number: 4 (lower is better) Translates to: QQHKGKEHFPARMESSFPFKLYQ*LPLLWH Trigger: ATGCCAAAGAAGAGGCAGGCACTGGTAGAGTTTGAA...TGGGAAGGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000038572.15 ENSMUST00000172529.8 ENSMUST00000174477.8 ENSMUST00000174548.8 ENSMUST00000174882.8 |
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| CDS-3UTR GCA 90 bp | CAAACCAACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCTGGCATAATGGCTGGTTaGTTGGAGACACAGACATTC | + |
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Preference number: 4 (lower is better) Translates to: QTNSIKERNIFLLGWSLPGIMAG*LETQTF Trigger: GAATGTCTGTGTCTCCAAGCAACCAGCCATTATGCC...AGGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTTGGTTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000038572.15 ENSMUST00000172529.8 ENSMUST00000174477.8 ENSMUST00000174548.8 |
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| CDS-3UTR GCA 90 bp | CAAACCAACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCTGGAGCATTGAAGAAGTaGAGTACATTGCTAGGGTGC | + |
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Preference number: 4 (lower is better) Translates to: QTNSIKERNIFLLGWSLPGALKK*STLLGC Trigger: GCACCCTAGCAATGTACTGCACTTCTTCAATGCTCC...AGGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTTGGTTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000038572.15 ENSMUST00000172529.8 ENSMUST00000174477.8 ENSMUST00000174548.8 |
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| CDS-3UTR GCA 90 bp | ACAAACCAACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCGGAGCATTGAAGAAGTaGAGTACATTGCTAGGGTGC | + |
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Preference number: 4 (lower is better) Translates to: TNQQHKGKEHFPARMESSGALKK*STLLGC Trigger: GCACCCTAGCAATGTACTGCACTTCTTCAATGCTCC...GGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTTGGTTTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000038572.15 ENSMUST00000172529.8 ENSMUST00000174477.8 ENSMUST00000174548.8 |
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| CDS-3UTR GCA 90 bp | ACAAACCAACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCTTCAAACTCTACCAGTaGCTGCCTCTTCTTTGGCAT | + |
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Preference number: 4 (lower is better) Translates to: TNQQHKGKEHFPARMESSFKLYQ*LPLLWH Trigger: ATGCCAAAGAAGAGGCAGGCACTGGTAGAGTTTGAA...GGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTTGGTTTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000038572.15 ENSMUST00000172529.8 ENSMUST00000174477.8 ENSMUST00000174548.8 ENSMUST00000174882.8 |
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| CDS-3UTR GCA 90 bp | AACCAAACAAACCAACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGGGAGCATTGAAGAAGTaGAGTACATTGCTAGGGTGC | + |
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Preference number: 4 (lower is better) Translates to: NQTNQQHKGKEHFPARMEGALKK*STLLGC Trigger: GCACCCTAGCAATGTACTGCACTTCTTCAATGCTCC...CTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTTGGTTTGTTTGGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000038572.15 ENSMUST00000172529.8 ENSMUST00000174477.8 ENSMUST00000174548.8 |
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| CDS-3UTR GCA 90 bp | ATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCTTCCCAGCATCCAAGAATAATTGACAAATaGAGGGTGACCGGCAATGTA | + |
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Preference number: 4 (lower is better) Translates to: IKERNIFLLGWSLPSQHPRIIDK*RVTGNV Trigger: TACATTGCCGGTCACCCTGCATTTGTCAATTATTCT...TGGATGCTGGGAAGGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000038572.15 ENSMUST00000172529.8 ENSMUST00000174477.8 ENSMUST00000174548.8 ENSMUST00000174882.8 |
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| CDS-3UTR GCA 90 bp | CAACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCTTCCCAAGAATAATTGACAAATaGAGGGTGACCGGCAATGTA | + |
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Preference number: 4 (lower is better) Translates to: QQHKGKEHFPARMESSFPRIIDK*RVTGNV Trigger: TACATTGCCGGTCACCCTGCATTTGTCAATTATTCT...TGGGAAGGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000038572.15 ENSMUST00000172529.8 ENSMUST00000174477.8 ENSMUST00000174548.8 ENSMUST00000174882.8 |
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| CDS-3UTR CCA 90 bp | ACAAACCAACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCCACAGTTCTGAAAGATaGCGTCCCATCAAACATACA | + |
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Preference number: 4 (lower is better) Translates to: TNQQHKGKEHFPARMESSHSSER*RPIKHT Trigger: TGTATGTTTGATGGGACGCCATCTTTCAGAACTGTG...GGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTTGGTTTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174882.8 |
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| CDS-3UTR GCA 90 bp | CAAACCAACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCTAGAATAATTGACAAATaGAGGGTGACCGGCAATGTA | + |
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Preference number: 4 (lower is better) Translates to: QTNSIKERNIFLLGWSLPRIIDK*RVTGNV Trigger: TACATTGCCGGTCACCCTGCATTTGTCAATTATTCT...AGGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTTGGTTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000038572.15 ENSMUST00000172529.8 ENSMUST00000174477.8 ENSMUST00000174548.8 ENSMUST00000174882.8 |
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| CDS-3UTR GCA 90 bp | ACAAACCAACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCAGAATAATTGACAAATaGAGGGTGACCGGCAATGTA | + |
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Preference number: 4 (lower is better) Translates to: TNQQHKGKEHFPARMESSRIIDK*RVTGNV Trigger: TACATTGCCGGTCACCCTGCATTTGTCAATTATTCT...GGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTTGGTTTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000038572.15 ENSMUST00000172529.8 ENSMUST00000174477.8 ENSMUST00000174548.8 ENSMUST00000174882.8 |
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| CDS GCA 90 bp | ACCATCGCTCCCGCCCGCCTCAGCTGCTCGTCCGGCTGCTGCCTCTaGTCGAGCCGCCGACGCCGCTTCTCCGCCCGGGGCAGCAGCCTC | + |
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Preference number: 5 (lower is better) Translates to: TIAPARLSCSSGCCL*SSRRRRFSARGSSL Trigger: GAGGCTGCTGCCCCGGGCGGAGAAGCGGCGTCGGCGGCTCGAGCAGAGGCAGCAGCCGGACGAGCAGCTGAGGCGGGCGGGAGCGATGGT 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038572.15 ENSMUST00000174548.8 |
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| CDS GCA 90 bp | CCGCCCGCAGCCGCCATCTTCACCATCGCTCCCGCCCGCCTCAGCTaGTCGTCCGGCTGCTGCCTCTGCTCGAGCCGCCGACGCCGCTTC | + |
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Preference number: 5 (lower is better) Translates to: PPAAAIFTIAPARLS*SSGCCLCSSRRRRF Trigger: GAAGCGGCGTCGGCGGCTCGAGCAGAGGCAGCAGCCGGACGAGCAGCTGAGGCGGGCGGGAGCGATGGTGAAGATGGCGGCTGCGGGCGG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038572.15 ENSMUST00000174477.8 ENSMUST00000174548.8 |
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| CDS GCA 90 bp | ATCTTCACCATCGCTCCCGCCCGCCTCAGCTGCTCGTCCGGCTGCTaGCTCTGCTCGAGCCGCCGACGCCGCTTCTCCGCCCGGGGCAGC | + |
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Preference number: 5 (lower is better) Translates to: IFTIAPARLSCSSGC*LCSSRRRRFSARGS Trigger: GCTGCCCCGGGCGGAGAAGCGGCGTCGGCGGCTCGAGCAGAGGCAGCAGCCGGACGAGCAGCTGAGGCGGGCGGGAGCGATGGTGAAGAT 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038572.15 ENSMUST00000174548.8 |
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| CDS-3UTR CAA 90 bp | CAACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCTTCCCAGTGCCTGCCTCTTCTTaGGCATCACCACCACATAGC | + |
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Preference number: 5 (lower is better) Translates to: QQHKGKEHFPARMESSFPVPASS*ASPPHS Trigger: GCTATGTGGTGGTGATGCCAAAGAAGAGGCAGGCAC...TGGGAAGGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000038572.15 ENSMUST00000174477.8 ENSMUST00000174548.8 ENSMUST00000174882.8 |
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| CDS-3UTR CAA 90 bp | ACAAACCAACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCGGCGCGCTGGGCACTTaGCACAGAATCAAACTCCAC | + |
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Preference number: 5 (lower is better) Translates to: TNQQHKGKEHFPARMESSGALGT*HRIKLH Trigger: GTGGAGTTTGATTCTGTGCAAAGTGCCCAGCGCGCC...GGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTTGGTTTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000038572.15 ENSMUST00000172529.8 ENSMUST00000174477.8 ENSMUST00000174548.8 ENSMUST00000174882.8 |
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| CDS-3UTR CAA 90 bp | CAAACCAACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCTGGCGCGCTGGGCACTTaGCACAGAATCAAACTCCAC | + |
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Preference number: 5 (lower is better) Translates to: QTNSIKERNIFLLGWSLPGALGT*HRIKLH Trigger: GTGGAGTTTGATTCTGTGCAAAGTGCCCAGCGCGCC...AGGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTTGGTTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000038572.15 ENSMUST00000172529.8 ENSMUST00000174477.8 ENSMUST00000174548.8 ENSMUST00000174882.8 |
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| CDS-3UTR CAA 90 bp | ACAAACCAACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCGTGCCTGCCTCTTCTTaGGCATCACCACCACATAGC | + |
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Preference number: 5 (lower is better) Translates to: TNQQHKGKEHFPARMESSVPASS*ASPPHS Trigger: GCTATGTGGTGGTGATGCCAAAGAAGAGGCAGGCAC...GGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTTGGTTTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000038572.15 ENSMUST00000174477.8 ENSMUST00000174548.8 ENSMUST00000174882.8 |
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| CDS-3UTR CAA 90 bp | CAAACCAACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCTGTGCCTGCCTCTTCTTaGGCATCACCACCACATAGC | + |
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Preference number: 5 (lower is better) Translates to: QTNSIKERNIFLLGWSLPVPASS*ASPPHS Trigger: GCTATGTGGTGGTGATGCCAAAGAAGAGGCAGGCAC...AGGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTTGGTTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000038572.15 ENSMUST00000174477.8 ENSMUST00000174548.8 ENSMUST00000174882.8 |
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| CDS-3UTR CAA 90 bp | ATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCTTCCCAGCATCCAATGGCGGCCCCCGGCTaGCTTTTCATAAATTTCACC | + |
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Preference number: 5 (lower is better) Translates to: IKERNIFLLGWSLPSQHPMAAPG*LFINFT Trigger: GGTGAAATTTATGAAAAGCAAGCCGGGGGCCGCCAT...TGGATGCTGGGAAGGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000038572.15 ENSMUST00000172529.8 ENSMUST00000174477.8 ENSMUST00000174548.8 |
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| CDS-3UTR CAA 90 bp | ACAAACCAACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCCATACACTGCGACCCTaGTCCACTGAGGTTGGGGTT | + |
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Preference number: 5 (lower is better) Translates to: TNQQHKGKEHFPARMESSHTLRP*STEVGV Trigger: AACCCCAACCTCAGTGGACAAGGGTCGCAGTGTATG...GGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTTGGTTTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174882.8 |
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| CDS-3UTR CAA 90 bp | ACAAACCAACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCATGGCGGCCCCCGGCTaGCTTTTCATAAATTTCACC | + |
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Preference number: 5 (lower is better) Translates to: TNQQHKGKEHFPARMESSMAAPG*LFINFT Trigger: GGTGAAATTTATGAAAAGCAAGCCGGGGGCCGCCAT...GGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTTGGTTTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000038572.15 ENSMUST00000172529.8 ENSMUST00000174477.8 ENSMUST00000174548.8 |
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| CDS-3UTR CAA 90 bp | CAAACCAACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCTATGGCGGCCCCCGGCTaGCTTTTCATAAATTTCACC | + |
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Preference number: 5 (lower is better) Translates to: QTNSIKERNIFLLGWSLPMAAPG*LFINFT Trigger: GGTGAAATTTATGAAAAGCAAGCCGGGGGCCGCCAT...AGGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTTGGTTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000038572.15 ENSMUST00000172529.8 ENSMUST00000174477.8 ENSMUST00000174548.8 |
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| CDS-3UTR CAA 90 bp | AACCAAACAAACCAACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGATGGCGGCCCCCGGCTaGCTTTTCATAAATTTCACC | + |
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Preference number: 5 (lower is better) Translates to: NQTNQQHKGKEHFPARMEMAAPG*LFINFT Trigger: GGTGAAATTTATGAAAAGCAAGCCGGGGGCCGCCAT...CTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTTGGTTTGTTTGGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000038572.15 ENSMUST00000172529.8 ENSMUST00000174477.8 ENSMUST00000174548.8 |
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| CDS-3UTR CAA 90 bp | ATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCTTCCCAGCATCCAGAGCTCCGCTCGCTTTaGCCTGAAAATACTTTGACA | + |
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Preference number: 5 (lower is better) Translates to: IKERNIFLLGWSLPSQHPELRSL*PENTLT Trigger: TGTCAAAGTATTTTCAGGCAAAAGCGAGCGGAGCTC...TGGATGCTGGGAAGGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000038572.15 ENSMUST00000172529.8 ENSMUST00000174477.8 ENSMUST00000174548.8 |
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| CDS-3UTR CAA 90 bp | CAACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCTTCCCAATAATGGCTGGTTGCTaGGAGACACAGACATTCATC | + |
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Preference number: 5 (lower is better) Translates to: QQHKGKEHFPARMESSFPIMAGC*ETQTFI Trigger: GATGAATGTCTGTGTCTCCAAGCAACCAGCCATTAT...TGGGAAGGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000038572.15 ENSMUST00000172529.8 ENSMUST00000174477.8 ENSMUST00000174548.8 |
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| CDS-3UTR CAA 90 bp | ACAAACCAACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCGAGCTCCGCTCGCTTTaGCCTGAAAATACTTTGACA | + |
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Preference number: 5 (lower is better) Translates to: TNQQHKGKEHFPARMESSELRSL*PENTLT Trigger: TGTCAAAGTATTTTCAGGCAAAAGCGAGCGGAGCTC...GGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTTGGTTTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000038572.15 ENSMUST00000172529.8 ENSMUST00000174477.8 ENSMUST00000174548.8 |
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| CDS-3UTR CAA 90 bp | ACAAACCAACAGCATAAAGGAAAGGAACATTTTCCTGCTCGGATGGAGTCTTCCATAATGGCTGGTTGCTaGGAGACACAGACATTCATC | + |
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Preference number: 5 (lower is better) Translates to: TNQQHKGKEHFPARMESSIMAGC*ETQTFI Trigger: GATGAATGTCTGTGTCTCCAAGCAACCAGCCATTAT...GGAAGACTCCATCCGAGCAGGAAAATGTTCCTTTCCTTTATGCTGTTGGTTTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000038572.15 ENSMUST00000172529.8 ENSMUST00000174477.8 ENSMUST00000174548.8 |
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| CDS GCA 72 bp | CCCGCCCGCCTCAGCTGCTCGTCCGGCTGCTGCCTCTaGTCGAGCCGCCGACGCCGCTTCTCCGCCCGGGGC | + |
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Preference number: 6 (lower is better) Translates to: PARLSCSSGCCL*SSRRRRFSARG Trigger: GCCCCGGGCGGAGAAGCGGCGTCGGCGGCTCGAGCAGAGGCAGCAGCCGGACGAGCAGCTGAGGCGGGCGGG 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038572.15 ENSMUST00000174548.8 |
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| CDS GCA 72 bp | ATCGCTCCCGCCCGCCTCAGCTGCTCGTCCGGCTGCTaGCTCTGCTCGAGCCGCCGACGCCGCTTCTCCGCC | + |
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Preference number: 6 (lower is better) Translates to: IAPARLSCSSGC*LCSSRRRRFSA Trigger: GGCGGAGAAGCGGCGTCGGCGGCTCGAGCAGAGGCAGCAGCCGGACGAGCAGCTGAGGCGGGCGGGAGCGAT 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038572.15 ENSMUST00000174548.8 |
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| CDS GCA 72 bp | ACCATCGCTCCCGCCCGCCTCAGCTGCTCGTCCGGCTaGTGCCTCTGCTCGAGCCGCCGACGCCGCTTCTCC | + |
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Preference number: 6 (lower is better) Translates to: TIAPARLSCSSG*CLCSSRRRRFS Trigger: GGAGAAGCGGCGTCGGCGGCTCGAGCAGAGGCAGCAGCCGGACGAGCAGCTGAGGCGGGCGGGAGCGATGGT 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038572.15 ENSMUST00000174477.8 ENSMUST00000174548.8 |
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| CDS GCA 72 bp | CCCGCCGCCCCGGAGCCTCCGCCGCCGCCGCCTCCGTaGTGGTCGCCGGCGTTTTCAGTCTTCAGCCGTTTA | + |
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Preference number: 6 (lower is better) Translates to: PAAPEPPPPPPP*WSPAFSVFSRL Trigger: TAAACGGCTGAAGACTGAAAACGCCGGCGACCAGCACGGAGGCGGCGGCGGCGGAGGCTCCGGGGCGGCGGG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000038572.15 ENSMUST00000174477.8 ENSMUST00000174548.8 |
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| CDS TCA 72 bp | GTGCCTGCCTCTTCTTTGGCATCACCACCACATAGCTaGTGGGTCCAAATTCTTGCAGGGCTTCCACAAGGT | + |
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Preference number: 6 (lower is better) Translates to: VPASSLASPPHS*WVQILAGLPQG Trigger: ACCTTGTGGAAGCCCTGCAAGAATTTGGACCCATCAGCTATGTGGTGGTGATGCCAAAGAAGAGGCAGGCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000038572.15 ENSMUST00000174477.8 ENSMUST00000174548.8 ENSMUST00000174882.8 |
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