Pregenerated sensors for HNRNPK (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021546Ensembl transcript IDs: ENSMUST00000043269.14, ENSMUST00000116403.9, ENSMUST00000176207.8, ENSMUST00000176558.2, ENSMUST00000177019.8, ENSMUST00000177497.8, ENSMUST00000224182.2, ENSMUST00000225674.2
Found 37 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGGCTCAGATTAAGTGGCAATAATCGACCAGAATTGAAGCAGAGTTaGATTCTCATGTTCCCCGCCACCAAGTTAAGGACACCCTCGCTG | + |
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Preference number: 1 (lower is better) Translates to: GLRLSGNNRPELKQS*ILMFPATKLRTPSL Trigger: CAGCGAGGGTGTCCTTAACTTGGTGGCGGGGAACATGAGAATTCAACTCTGCTTCAATTCTGGTCGATTATTGCCACTTAATCTGAGCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176558.2 |
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| 3UTR CCA 90 bp | ACCAAGTTTACTCTGGTTAATAAAGCTCATTGCCCATCAGGCTTCTaGCATATACTTAAGATGCGTAACTCTTGTAGTATTGCTCCCCAC | + |
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Preference number: 1 (lower is better) Translates to: TKFTLVNKAHCPSGF*HILKMRNSCSIAPH Trigger: GTGGGGAGCAATACTACAAGAGTTACGCATCTTAAGTATATGCCAGAAGCCTGATGGGCAATGAGCTTTATTAACCAGAGTAAACTTGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENSMUST00000043269.14 ENSMUST00000116403.9 ENSMUST00000176207.8 ENSMUST00000177019.8 ENSMUST00000177497.8 ENSMUST00000224182.2 ENSMUST00000225674.2 |
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| 3UTR GCA 90 bp | AACAGTTTGATTTACAATGCAGCAAATATGCAACACTTGAAGCTGTaGTCCTTCCATCGAAATAAAATTAGTGGATCGTTTGGGTGGGCA | + |
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Preference number: 1 (lower is better) Translates to: NSLIYNAANMQHLKL*SFHRNKISGSFGWA Trigger: TGCCCACCCAAACGATCCACTAATTTTATTTCGATGGAAGGAGCACAGCTTCAAGTGTTGCATATTTGCTGCATTGTAAATCAAACTGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176558.2 |
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| 3UTR-3UTR CCA 90 bp | ACCAGAATTGAAGCAGAGTTGAATTCTCATGTTCCCCGCCACCAAGTTAAGGACAGTGGATCGTTTGGGTaGGCAACTCACGGTAAAAGT | + |
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Preference number: 2 (lower is better) Translates to: TRIEAELNSHVPRHQVKDSGSFG*ATHGKS Trigger: ACTTTTACCGTGAGTTGCCCACCCAAACGATCCACT...GTCCTTAACTTGGTGGCGGGGAACATGAGAATTCAACTCTGCTTCAATTCTGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000176558.2 |
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| 3UTR CAA 90 bp | AAGGTGGGCCACAAAGACAGAGCGAGAGACTATTTGGGTAACAGTTaGATTTACAATGCAGCAAATATGCAACACTTGAAGCTGTGCTCC | + |
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Preference number: 2 (lower is better) Translates to: KVGHKDRARDYLGNS*IYNAANMQHLKLCS Trigger: GGAGCACAGCTTCAAGTGTTGCATATTTGCTGCATTGTAAATCAAACTGTTACCCAAATAGTCTCTCGCTCTGTCTTTGTGGCCCACCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176558.2 |
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| 3UTR-3UTR CCA 90 bp | AGAGACAGAGAGAATGGGCTGCTGGAAGGGCTCAGATTAAGTGGCAATAATCGAGGTGAACACTGTATCTaGAGTAAGGTTATGAATACC | + |
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Preference number: 2 (lower is better) Translates to: RDRENGLLEGLRLSGNNRGEHCI*SKVMNT Trigger: GGTATTCATAACCTTACTCCAGATACAGTGTTCACC...TCGATTATTGCCACTTAATCTGAGCCCTTCCAGCAGCCCATTCTCTCTGTCTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176558.2 |
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| 3UTR-3UTR CCA 90 bp | CCAACCATTAAGAAGTCACCCAAACTGAGTTTGCCAATGTATTTTGTCTATGTCAGTTTAGGGGTGGGCTaGAAAATTCAACCACCATTT | + |
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Preference number: 2 (lower is better) Translates to: PTIKKSPKLSLPMYFVYVSLGVG*KIQPPF Trigger: AAATGGTGGTTGAATTTTCCAGCCCACCCCTAAACT...GACATAGACAAAATACATTGGCAAACTCAGTTTGGGTGACTTCTTAATGGTTGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 7 transcripts: ENSMUST00000043269.14 ENSMUST00000116403.9 ENSMUST00000176207.8 ENSMUST00000177019.8 ENSMUST00000177497.8 ENSMUST00000224182.2 ENSMUST00000225674.2 |
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| 3UTR-3UTR CCA 90 bp | GATGGAAATTTATCAAGCCAAGTCTTTCCAACCATTAAGAAGTCACCCAAACTGAGTTTAGGGGTGGGCTaGAAAATTCAACCACCATTT | + |
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Preference number: 2 (lower is better) Translates to: DGNLSSQVFPTIKKSPKLSLGVG*KIQPPF Trigger: AAATGGTGGTTGAATTTTCCAGCCCACCCCTAAACT...CAGTTTGGGTGACTTCTTAATGGTTGGAAAGACTTGGCTTGATAAATTTCCATC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 7 transcripts: ENSMUST00000043269.14 ENSMUST00000116403.9 ENSMUST00000176207.8 ENSMUST00000177019.8 ENSMUST00000177497.8 ENSMUST00000224182.2 ENSMUST00000225674.2 |
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| 3UTR-3UTR TCA 90 bp | GATGGAAATTTATCAAGCCAAGTCTTTCCAACCATTAAGAAGTCACCCAAACTGAGAAGTCACCCAAACTaGGTTTGCCAATGTATTTTG | + |
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Preference number: 2 (lower is better) Translates to: DGNLSSQVFPTIKKSPKLRSHPN*VCQCIL Trigger: CAAAATACATTGGCAAACTCAGTTTGGGTGACTTCT...CAGTTTGGGTGACTTCTTAATGGTTGGAAAGACTTGGCTTGATAAATTTCCATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENSMUST00000043269.14 ENSMUST00000116403.9 ENSMUST00000176207.8 ENSMUST00000177019.8 ENSMUST00000177497.8 ENSMUST00000224182.2 ENSMUST00000225674.2 |
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| 3UTR-3UTR CCA 90 bp | TTTCCAACCATTAAGAAGTCACCCAAACTGAGTTTGCCAATGTATTTTGTCTATAGTTTAGGGGTGGGCTaGAAAATTCAACCACCATTT | + |
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Preference number: 2 (lower is better) Translates to: FPTIKKSPKLSLPMYFVYSLGVG*KIQPPF Trigger: AAATGGTGGTTGAATTTTCCAGCCCACCCCTAAACT...ATAGACAAAATACATTGGCAAACTCAGTTTGGGTGACTTCTTAATGGTTGGAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 7 transcripts: ENSMUST00000043269.14 ENSMUST00000116403.9 ENSMUST00000176207.8 ENSMUST00000177019.8 ENSMUST00000177497.8 ENSMUST00000224182.2 ENSMUST00000225674.2 |
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| 3UTR CAA 90 bp | TATTTGGGTAACAGTTTGATTTACAATGCAGCAAATATGCAACACTaGAAGCTGTGCTCCTTCCATCGAAATAAAATTAGTGGATCGTTT | + |
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Preference number: 2 (lower is better) Translates to: YLGNSLIYNAANMQH*KLCSFHRNKISGSF Trigger: AAACGATCCACTAATTTTATTTCGATGGAAGGAGCACAGCTTCAAGTGTTGCATATTTGCTGCATTGTAAATCAAACTGTTACCCAAATA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176558.2 |
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| 3UTR-3UTR CAA 90 bp | CCCCGCCACCAAGTTAAGGACACCCTCGCTGTTATGGTAATACTGGCACACCTTAAATTAGTGGATCGTTaGGGTGGGCAACTCACGGTA | + |
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Preference number: 3 (lower is better) Translates to: PRHQVKDTLAVMVILAHLKLVDR*GGQLTV Trigger: TACCGTGAGTTGCCCACCCAAACGATCCACTAATTT...AAGGTGTGCCAGTATTACCATAACAGCGAGGGTGTCCTTAACTTGGTGGCGGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176558.2 |
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| 3UTR-3UTR CAA 90 bp | GTGGGCCACAAAGACAGAGCGAGAGACTATTTGGGTAACAGTTTGATTTACAATGCAAATATGCAACACTaGAAGCTGTGCTCCTTCCAT | + |
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Preference number: 3 (lower is better) Translates to: VGHKDRARDYLGNSLIYNANMQH*KLCSFH Trigger: ATGGAAGGAGCACAGCTTCAAGTGTTGCATATTTGC...ATTGTAAATCAAACTGTTACCCAAATAGTCTCTCGCTCTGTCTTTGTGGCCCAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176558.2 |
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| 3UTR TCA 72 bp | TTAAGTGGCAATAATCGACCAGAATTGAAGCAGAGTTaGATTCTCATGTTCCCCGCCACCAAGTTAAGGACA | + |
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Preference number: 3 (lower is better) Translates to: LSGNNRPELKQS*ILMFPATKLRT Trigger: TGTCCTTAACTTGGTGGCGGGGAACATGAGAATTCAACTCTGCTTCAATTCTGGTCGATTATTGCCACTTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176558.2 |
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| 3UTR CCA 72 bp | ACTCTGGTTAATAAAGCTCATTGCCCATCAGGCTTCTaGCATATACTTAAGATGCGTAACTCTTGTAGTATT | + |
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Preference number: 3 (lower is better) Translates to: TLVNKAHCPSGF*HILKMRNSCSI Trigger: AATACTACAAGAGTTACGCATCTTAAGTATATGCCAGAAGCCTGATGGGCAATGAGCTTTATTAACCAGAGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000043269.14 ENSMUST00000116403.9 ENSMUST00000176207.8 ENSMUST00000177019.8 ENSMUST00000177497.8 ENSMUST00000224182.2 ENSMUST00000225674.2 |
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| 3UTR-3UTR CAA 90 bp | GATGGAAATTTATCAAGCCAAGTCTTTCCAACCATTAAGAAGTCACCCAAACTGTCACCCAAACTGAGTTaGCCAATGTATTTTGTCTAT | + |
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Preference number: 3 (lower is better) Translates to: DGNLSSQVFPTIKKSPKLSPKLS*PMYFVY Trigger: ATAGACAAAATACATTGGCAAACTCAGTTTGGGTGA...CAGTTTGGGTGACTTCTTAATGGTTGGAAAGACTTGGCTTGATAAATTTCCATC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENSMUST00000043269.14 ENSMUST00000116403.9 ENSMUST00000176207.8 ENSMUST00000177019.8 ENSMUST00000177497.8 ENSMUST00000224182.2 ENSMUST00000225674.2 |
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| 3UTR GCA 72 bp | ATTTACAATGCAGCAAATATGCAACACTTGAAGCTGTaGTCCTTCCATCGAAATAAAATTAGTGGATCGTTT | + |
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Preference number: 3 (lower is better) Translates to: IYNAANMQHLKL*SFHRNKISGSF Trigger: AAACGATCCACTAATTTTATTTCGATGGAAGGAGCACAGCTTCAAGTGTTGCATATTTGCTGCATTGTAAAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176558.2 |
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| CDS-3UTR GCA 90 bp | CCAACCATTAAGAAGTCACCCAAACTGAGTTTGCCAATGTATTTTGTCTATGTCGATTCCGGGCTCTGCTaGCACCCCGGCCACCTCGAC | + |
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Preference number: 4 (lower is better) Translates to: PTIKKSPKLSLPMYFVYVDSGLC*HPGHLD Trigger: GTCGAGGTGGCCGGGGTGGCAGCAGAGCCCGGAATC...GACATAGACAAAATACATTGGCAAACTCAGTTTGGGTGACTTCTTAATGGTTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 7 transcripts: ENSMUST00000043269.14 ENSMUST00000116403.9 ENSMUST00000176207.8 ENSMUST00000177019.8 ENSMUST00000177497.8 ENSMUST00000224182.2 ENSMUST00000225674.2 |
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| CDS-3UTR CCA 90 bp | GATGGAAATTTATCAAGCCAAGTCTTTCCAACCATTAAGAAGTCACCCAAACTGGCCACCTCGACCAGGTaGTGGTGGTGGAGGTCCTCG | + |
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Preference number: 4 (lower is better) Translates to: DGNLSSQVFPTIKKSPKLATSTR*WWWRSS Trigger: CGAGGACCTCCACCACCACCACCTGGTCGAGGTGGC...CAGTTTGGGTGACTTCTTAATGGTTGGAAAGACTTGGCTTGATAAATTTCCATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000043269.14 ENSMUST00000116403.9 ENSMUST00000176207.8 ENSMUST00000177019.8 ENSMUST00000177497.8 ENSMUST00000224182.2 ENSMUST00000225674.2 |
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| CDS-3UTR GCA 90 bp | TTTCCAACCATTAAGAAGTCACCCAAACTGAGTTTGCCAATGTATTTTGTCTATGATTCCGGGCTCTGCTaGCACCCCGGCCACCTCGAC | + |
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Preference number: 4 (lower is better) Translates to: FPTIKKSPKLSLPMYFVYDSGLC*HPGHLD Trigger: GTCGAGGTGGCCGGGGTGGCAGCAGAGCCCGGAATC...ATAGACAAAATACATTGGCAAACTCAGTTTGGGTGACTTCTTAATGGTTGGAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 7 transcripts: ENSMUST00000043269.14 ENSMUST00000116403.9 ENSMUST00000176207.8 ENSMUST00000177019.8 ENSMUST00000177497.8 ENSMUST00000224182.2 ENSMUST00000225674.2 |
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| CDS-3UTR CCA 90 bp | GATGGAAATTTATCAAGCCAAGTCTTTCCAACCATTAAGAAGTCACCCAAACTGACCAGGTGGTGGTGGTaGAGGTCCTCGACGAGGGCT | + |
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Preference number: 4 (lower is better) Translates to: DGNLSSQVFPTIKKSPKLTRWWW*RSSTRA Trigger: AGCCCTCGTCGAGGACCTCCACCACCACCACCTGGT...CAGTTTGGGTGACTTCTTAATGGTTGGAAAGACTTGGCTTGATAAATTTCCATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000043269.14 ENSMUST00000116403.9 ENSMUST00000176207.8 ENSMUST00000177019.8 ENSMUST00000177497.8 ENSMUST00000224182.2 ENSMUST00000225674.2 |
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| CDS-3UTR CCA 90 bp | CCAACCATTAAGAAGTCACCCAAACTGAGTTTGCCAATGTATTTTGTCTATGTCACCAGGTGGTGGTGGTaGAGGTCCTCGACGAGGGCT | + |
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Preference number: 4 (lower is better) Translates to: PTIKKSPKLSLPMYFVYVTRWWW*RSSTRA Trigger: AGCCCTCGTCGAGGACCTCCACCACCACCACCTGGT...GACATAGACAAAATACATTGGCAAACTCAGTTTGGGTGACTTCTTAATGGTTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENSMUST00000043269.14 ENSMUST00000116403.9 ENSMUST00000176207.8 ENSMUST00000177019.8 ENSMUST00000177497.8 ENSMUST00000224182.2 ENSMUST00000225674.2 |
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| CDS-3UTR CCA 90 bp | GATGGAAATTTATCAAGCCAAGTCTTTCCAACCATTAAGAAGTCACCCAAACTGTCGACCAGGTGGTGGTaGTGGAGGTCCTCGACGAGG | + |
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Preference number: 4 (lower is better) Translates to: DGNLSSQVFPTIKKSPKLSTRWW*WRSSTR Trigger: CCTCGTCGAGGACCTCCACCACCACCACCTGGTCGA...CAGTTTGGGTGACTTCTTAATGGTTGGAAAGACTTGGCTTGATAAATTTCCATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000043269.14 ENSMUST00000116403.9 ENSMUST00000176207.8 ENSMUST00000177019.8 ENSMUST00000177497.8 ENSMUST00000224182.2 ENSMUST00000225674.2 |
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| CDS-3UTR CCA 90 bp | CCAACCATTAAGAAGTCACCCAAACTGAGTTTGCCAATGTATTTTGTCTATGTCTCGACCAGGTGGTGGTaGTGGAGGTCCTCGACGAGG | + |
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Preference number: 4 (lower is better) Translates to: PTIKKSPKLSLPMYFVYVSTRWW*WRSSTR Trigger: CCTCGTCGAGGACCTCCACCACCACCACCTGGTCGA...GACATAGACAAAATACATTGGCAAACTCAGTTTGGGTGACTTCTTAATGGTTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENSMUST00000043269.14 ENSMUST00000116403.9 ENSMUST00000176207.8 ENSMUST00000177019.8 ENSMUST00000177497.8 ENSMUST00000224182.2 ENSMUST00000225674.2 |
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| CDS-3UTR CCA 90 bp | TTTCCAACCATTAAGAAGTCACCCAAACTGAGTTTGCCAATGTATTTTGTCTATGCCACCTCGACCAGGTaGTGGTGGTGGAGGTCCTCG | + |
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Preference number: 4 (lower is better) Translates to: FPTIKKSPKLSLPMYFVYATSTR*WWWRSS Trigger: CGAGGACCTCCACCACCACCACCTGGTCGAGGTGGC...ATAGACAAAATACATTGGCAAACTCAGTTTGGGTGACTTCTTAATGGTTGGAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENSMUST00000043269.14 ENSMUST00000116403.9 ENSMUST00000176207.8 ENSMUST00000177019.8 ENSMUST00000177497.8 ENSMUST00000224182.2 ENSMUST00000225674.2 |
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| CDS-3UTR CCA 90 bp | TTTCCAACCATTAAGAAGTCACCCAAACTGAGTTTGCCAATGTATTTTGTCTATACCAGGTGGTGGTGGTaGAGGTCCTCGACGAGGGCT | + |
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Preference number: 4 (lower is better) Translates to: FPTIKKSPKLSLPMYFVYTRWWW*RSSTRA Trigger: AGCCCTCGTCGAGGACCTCCACCACCACCACCTGGT...ATAGACAAAATACATTGGCAAACTCAGTTTGGGTGACTTCTTAATGGTTGGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENSMUST00000043269.14 ENSMUST00000116403.9 ENSMUST00000176207.8 ENSMUST00000177019.8 ENSMUST00000177497.8 ENSMUST00000224182.2 ENSMUST00000225674.2 |
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| CDS-3UTR TCA 90 bp | GATGGAAATTTATCAAGCCAAGTCTTTCCAACCATTAAGAAGTCACCCAAACTGACTCTGTCAGTAGAGTaGGGGCAGCACTCCTGGAAA | + |
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Preference number: 4 (lower is better) Translates to: DGNLSSQVFPTIKKSPKLTLSVE*GQHSWK Trigger: TTTCCAGGAGTGCTGCCCTCACTCTACTGACAGAGT...CAGTTTGGGTGACTTCTTAATGGTTGGAAAGACTTGGCTTGATAAATTTCCATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENSMUST00000043269.14 ENSMUST00000116403.9 ENSMUST00000176207.8 ENSMUST00000177019.8 ENSMUST00000177497.8 ENSMUST00000224182.2 ENSMUST00000225674.2 |
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| CDS-3UTR TCA 90 bp | TTTCCAACCATTAAGAAGTCACCCAAACTGAGTTTGCCAATGTATTTTGTCTATACTCTGTCAGTAGAGTaGGGGCAGCACTCCTGGAAA | + |
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Preference number: 4 (lower is better) Translates to: FPTIKKSPKLSLPMYFVYTLSVE*GQHSWK Trigger: TTTCCAGGAGTGCTGCCCTCACTCTACTGACAGAGT...ATAGACAAAATACATTGGCAAACTCAGTTTGGGTGACTTCTTAATGGTTGGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 7 transcripts: ENSMUST00000043269.14 ENSMUST00000116403.9 ENSMUST00000176207.8 ENSMUST00000177019.8 ENSMUST00000177497.8 ENSMUST00000224182.2 ENSMUST00000225674.2 |
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| CDS-3UTR GCA 90 bp | CCAACCATTAAGAAGTCACCCAAACTGAGTTTGCCAATGTATTTTGTCTATGTCTCAACATCTGCATACTaGTTCACACTGTTCTGCAGC | + |
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Preference number: 4 (lower is better) Translates to: PTIKKSPKLSLPMYFVYVSTSAY*FTLFCS Trigger: GCTGCAGAACAGTGTGAAGCAGTATGCAGATGTTGA...GACATAGACAAAATACATTGGCAAACTCAGTTTGGGTGACTTCTTAATGGTTGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000116403.9 ENSMUST00000177019.8 ENSMUST00000224182.2 ENSMUST00000225674.2 |
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| CDS-3UTR GCA 90 bp | GATGGAAATTTATCAAGCCAAGTCTTTCCAACCATTAAGAAGTCACCCAAACTGTCAACATCTGCATACTaGTTCACACTGTTCTGCAGC | + |
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Preference number: 4 (lower is better) Translates to: DGNLSSQVFPTIKKSPKLSTSAY*FTLFCS Trigger: GCTGCAGAACAGTGTGAAGCAGTATGCAGATGTTGA...CAGTTTGGGTGACTTCTTAATGGTTGGAAAGACTTGGCTTGATAAATTTCCATC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000116403.9 ENSMUST00000177019.8 ENSMUST00000224182.2 ENSMUST00000225674.2 |
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| CDS-3UTR TCA 90 bp | GATGGAAATTTATCAAGCCAAGTCTTTCCAACCATTAAGAAGTCACCCAAACTGGATGCTCCAGATTCATaGCGAATTTGTTTAATCCGC | + |
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Preference number: 4 (lower is better) Translates to: DGNLSSQVFPTIKKSPKLDAPDS*RICLIR Trigger: GCGGATTAAACAAATTCGTCATGAATCTGGAGCATC...CAGTTTGGGTGACTTCTTAATGGTTGGAAAGACTTGGCTTGATAAATTTCCATC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000043269.14 ENSMUST00000116403.9 ENSMUST00000176207.8 ENSMUST00000177019.8 ENSMUST00000177497.8 ENSMUST00000224182.2 ENSMUST00000225674.2 |
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| CDS-3UTR TCA 90 bp | CCAACCATTAAGAAGTCACCCAAACTGAGTTTGCCAATGTATTTTGTCTATGTCGATGCTCCAGATTCATaGCGAATTTGTTTAATCCGC | + |
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Preference number: 4 (lower is better) Translates to: PTIKKSPKLSLPMYFVYVDAPDS*RICLIR Trigger: GCGGATTAAACAAATTCGTCATGAATCTGGAGCATC...GACATAGACAAAATACATTGGCAAACTCAGTTTGGGTGACTTCTTAATGGTTGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENSMUST00000043269.14 ENSMUST00000116403.9 ENSMUST00000176207.8 ENSMUST00000177019.8 ENSMUST00000177497.8 ENSMUST00000224182.2 ENSMUST00000225674.2 |
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| CDS-3UTR TCA 90 bp | GATGGAAATTTATCAAGCCAAGTCTTTCCAACCATTAAGAAGTCACCCAAACTGAGCTTGATTGTTGTCTaGGTGTTTTCTCGAAGTTCT | + |
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Preference number: 4 (lower is better) Translates to: DGNLSSQVFPTIKKSPKLSLIVV*VFSRSS Trigger: AGAACTTCGAGAAAACACTCAGACAACAATCAAGCT...CAGTTTGGGTGACTTCTTAATGGTTGGAAAGACTTGGCTTGATAAATTTCCATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENSMUST00000043269.14 ENSMUST00000116403.9 ENSMUST00000176207.8 ENSMUST00000177019.8 ENSMUST00000177497.8 ENSMUST00000224182.2 ENSMUST00000225674.2 |
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| CDS-3UTR TCA 90 bp | CCAACCATTAAGAAGTCACCCAAACTGAGTTTGCCAATGTATTTTGTCTATGTCAGCTTGATTGTTGTCTaGGTGTTTTCTCGAAGTTCT | + |
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Preference number: 4 (lower is better) Translates to: PTIKKSPKLSLPMYFVYVSLIVV*VFSRSS Trigger: AGAACTTCGAGAAAACACTCAGACAACAATCAAGCT...GACATAGACAAAATACATTGGCAAACTCAGTTTGGGTGACTTCTTAATGGTTGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 7 transcripts: ENSMUST00000043269.14 ENSMUST00000116403.9 ENSMUST00000176207.8 ENSMUST00000177019.8 ENSMUST00000177497.8 ENSMUST00000224182.2 ENSMUST00000225674.2 |
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| CDS-3UTR TCA 90 bp | TTTCCAACCATTAAGAAGTCACCCAAACTGAGTTTGCCAATGTATTTTGTCTATAGCTTGATTGTTGTCTaGGTGTTTTCTCGAAGTTCT | + |
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Preference number: 4 (lower is better) Translates to: FPTIKKSPKLSLPMYFVYSLIVV*VFSRSS Trigger: AGAACTTCGAGAAAACACTCAGACAACAATCAAGCT...ATAGACAAAATACATTGGCAAACTCAGTTTGGGTGACTTCTTAATGGTTGGAAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 7 transcripts: ENSMUST00000043269.14 ENSMUST00000116403.9 ENSMUST00000176207.8 ENSMUST00000177019.8 ENSMUST00000177497.8 ENSMUST00000224182.2 ENSMUST00000225674.2 |
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| CDS-3UTR CAA 90 bp | CCAACCATTAAGAAGTCACCCAAACTGAGTTTGCCAATGTATTTTGTCTATGTCACTTCCTTTATAATGTaGGTACTCTTCCAAGGTAGG | + |
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Preference number: 5 (lower is better) Translates to: PTIKKSPKLSLPMYFVYVTSFIM*VLFQGR Trigger: CCTACCTTGGAAGAGTACCAACATTATAAAGGAAGT...GACATAGACAAAATACATTGGCAAACTCAGTTTGGGTGACTTCTTAATGGTTGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000176207.8 ENSMUST00000177019.8 |
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| CDS-3UTR CAA 90 bp | GATGGAAATTTATCAAGCCAAGTCTTTCCAACCATTAAGAAGTCACCCAAACTGACTTCCTTTATAATGTaGGTACTCTTCCAAGGTAGG | + |
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Preference number: 5 (lower is better) Translates to: DGNLSSQVFPTIKKSPKLTSFIM*VLFQGR Trigger: CCTACCTTGGAAGAGTACCAACATTATAAAGGAAGT...CAGTTTGGGTGACTTCTTAATGGTTGGAAAGACTTGGCTTGATAAATTTCCATC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176207.8 ENSMUST00000177019.8 |
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