Pregenerated sensors for HNRNPH3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020069Ensembl transcript IDs: ENSMUST00000020263.14, ENSMUST00000118898.8, ENSMUST00000119814.3, ENSMUST00000140743.8
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CACCACGACCATAGCCTCCCAAGCCATCAGGAGCACCGTAGCCTCCGCTGTAGCAGCCATGTCCTCCCATaGCTCTTCCATCTCGCATCC | + |
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Preference number: 2 (lower is better) Translates to: HHDHSLPSHQEHRSLRCSSHVLP*LFHLAS Trigger: GGATGCGAGATGGAAGAGGCATGGGAGGACATGGCT...GCTACAGCGGAGGCTACGGTGCTCCTGATGGCTTGGGAGGCTATGGTCGTGGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140743.8 |
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| 3UTR-3UTR TCA 90 bp | CACCACGACCATAGCCTCCCAAGCCATCAGGAGCACCGTAGCCTCCGCTGTAGCACCACCATGGAAACCTaGACTTGCATCACCAGCTCC | + |
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Preference number: 2 (lower is better) Translates to: HHDHSLPSHQEHRSLRCSTTMET*TCITSS Trigger: GGAGCTGGTGATGCAAGTTCAGGTTTCCATGGTGGT...GCTACAGCGGAGGCTACGGTGCTCCTGATGGCTTGGGAGGCTATGGTCGTGGTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140743.8 |
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| 3UTR-3UTR GCA 90 bp | GTTAGGACGTGTACGTTGGGGTGGTGTTGTCAGTACATCCCACGCCATCCACCTCACAAACTCTACATCTaGCTCGCCTGTTGCTCTGCC | + |
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Preference number: 2 (lower is better) Translates to: VRTCTLGWCCQYIPRHPPHKLYI*LACCSA Trigger: GGCAGAGCAACAGGCGAGGCAGATGTAGAGTTTGTG...AGGTGGATGGCGTGGGATGTACTGACAACACCACCCCAACGTACACGTCCTAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140743.8 |
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| 3UTR-3UTR TCA 90 bp | CATAGCCTCCCAAGCCATCAGGAGCACCGTAGCCTCCGCTGTAGCTGTTCCCCAGCTCCAATGTCAATATaGACACGTATTGGATTGAGC | + |
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Preference number: 2 (lower is better) Translates to: HSLPSHQEHRSLRCSCSPAPMSI*TRIGLS Trigger: GCTCAATCCAATACGTGTTCATATTGACATTGGAGC...TGGGGAACAGCTACAGCGGAGGCTACGGTGCTCCTGATGGCTTGGGAGGCTATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140743.8 |
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| 3UTR-3UTR GCA 90 bp | GTGTTAGGACGTGTACGTTGGGGTGGTGTTGTCAGTACATCCCACGCCATCCACAGACATGGCAGCTACTaGATCTTCATGTGTCACAAA | + |
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Preference number: 2 (lower is better) Translates to: VLGRVRWGGVVSTSHAIHRHGSY*IFMCHK Trigger: TTTGTGACACATGAAGATGCAGTAGCTGCCATGTCT...GTGGATGGCGTGGGATGTACTGACAACACCACCCCAACGTACACGTCCTAACAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140743.8 |
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| 3UTR-3UTR TCA 90 bp | TTGGGGTGGTGTTGTCAGTACATCCCACGCCATCCACCTCCACTCATTCCACCTTATTGGATTGAGCGGTaGGAAGAAATTAGCAATATC | + |
|
Preference number: 2 (lower is better) Translates to: LGWCCQYIPRHPPPLIPPYWIER*EEISNI Trigger: GATATTGCTAATTTCTTCTCACCGCTCAATCCAATA...AGGTGGAATGAGTGGAGGTGGATGGCGTGGGATGTACTGACAACACCACCCCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140743.8 |
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| 3UTR-3UTR TCA 90 bp | TCTTTAGGCTTTTTATTTACAGTATGTCCAGGGGTGAAAGGTAGTGCTACCCTATTATCCCAAATCTTATaGAGGCAGCACATCTTTAGG | + |
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Preference number: 2 (lower is better) Translates to: SLGFLFTVCPGVKGSATLLSQIL*RQHIFR Trigger: CCTAAAGATGTGCTGCCTTCATAAGATTTGGGATAA...TAGGGTAGCACTACCTTTCACCCCTGGACATACTGTAAATAAAAAGCCTAAAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020263.14 ENSMUST00000118898.8 |
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| 3UTR CCA 72 bp | AAGTCTAGTAGAGCAGGTGTGTTAGGACGTGTACGTTaGGGTGGTGTTGTCAGTACATCCCACGCCATCCAC | + |
|
Preference number: 3 (lower is better) Translates to: KSSRAGVLGRVR*GGVVSTSHAIH Trigger: GTGGATGGCGTGGGATGTACTGACAACACCACCCCAACGTACACGTCCTAACACACCTGCTCTACTAGACTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140743.8 |
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| 3UTR-3UTR CAA 90 bp | TTAAGTTCTCTAGGTGTCAATATATGCATCAATCAAGTTCCACCAGATGGTCATATGACAACAGAGCCTTaGTTCATTAGACACACATAC | + |
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Preference number: 3 (lower is better) Translates to: LSSLGVNICINQVPPDGHMTTEP*FIRHTY Trigger: GTATGTGTGTCTAATGAACAAAGGCTCTGTTGTCAT...ATGACCATCTGGTGGAACTTGATTGATGCATATATTGACACCTAGAGAACTTAA 38% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119814.3 |
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| 3UTR-3UTR CAA 90 bp | ATTAAGTTCTCTAGGTGTCAATATATGCATCAATCAAGTTCCACCAGATGGTCACCATTTCTGTATTTCTaGACCAAGTGTCAGGAACAT | + |
|
Preference number: 3 (lower is better) Translates to: IKFSRCQYMHQSSSTRWSPFLYF*TKCQEH Trigger: ATGTTCCTGACACTTGGTCAAGAAATACAGAAATGG...TGACCATCTGGTGGAACTTGATTGATGCATATATTGACACCTAGAGAACTTAAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119814.3 |
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| CDS-3UTR CCA 90 bp | ACGACCATAGCCTCCCAAGCCATCAGGAGCACCGTAGCCTCCGCTGTAGCTGTTTATTGGTCTATCATATaGTCCCGGTCGCTGTCCCAG | + |
|
Preference number: 4 (lower is better) Translates to: TTIASQAIRSTVASAVAVYWSII*SRSLSQ Trigger: CTGGGACAGCGACCGGGACCATATGATAGACCAATA...AACAGCTACAGCGGAGGCTACGGTGCTCCTGATGGCTTGGGAGGCTATGGTCGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140743.8 |
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| CDS-3UTR TCA 90 bp | CATAGCCTCCCAAGCCATCAGGAGCACCGTAGCCTCCGCTGTAGCTGTTCCCCAGATCATAAAATCCTTTaGTTTCACTCCTGCTACTCC | + |
|
Preference number: 4 (lower is better) Translates to: HSLPSHQEHRSLRCSCSPDHKIL*FHSCYS Trigger: GGAGTAGCAGGAGTGAAATCAAAGGATTTTATGATC...TGGGGAACAGCTACAGCGGAGGCTACGGTGCTCCTGATGGCTTGGGAGGCTATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000140743.8 |
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| CDS-3UTR GCA 90 bp | GTTAGGACGTGTACGTTGGGGTGGTGTTGTCAGTACATCCCACGCCATCCACCTCTATTTCCTCTTTGCTaGAACCAAATGGCAGTCCAC | + |
|
Preference number: 4 (lower is better) Translates to: VRTCTLGWCCQYIPRHPPLFPLC*NQMAVH Trigger: GTGGACTGCCATTTGGTTGCAGCAAAGAGGAAATAG...AGGTGGATGGCGTGGGATGTACTGACAACACCACCCCAACGTACACGTCCTAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140743.8 |
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| CDS-3UTR CCA 90 bp | CATATCCATCACCTCCTCGTCGCATTCTGTCATACATACTTCCACGCCCAGCTCTTTGCTGCAACCAAATaGCAGTCCACGAAGTCGCAC | + |
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Preference number: 4 (lower is better) Translates to: HIHHLLVAFCHTYFHAQLFAATK*QSTKSH Trigger: GTGCGACTTCGTGGACTGCCATTTGGTTGCAGCAAA...GAGCTGGGCGTGGAAGTATGTATGACAGAATGCGACGAGGAGGTGATGGATATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000119814.3 ENSMUST00000140743.8 |
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| CDS-3UTR GCA 90 bp | ATATCCATCACCTCCTCGTCGCATTCTGTCATACATACTTCCACGCCCAGCTCCCTATTTCCTCTTTGCTaGAACCAAATGGCAGTCCAC | + |
|
Preference number: 4 (lower is better) Translates to: ISITSSSHSVIHTSTPSSLFPLC*NQMAVH Trigger: GTGGACTGCCATTTGGTTGCAGCAAAGAGGAAATAG...GGAGCTGGGCGTGGAAGTATGTATGACAGAATGCGACGAGGAGGTGATGGATAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000119814.3 ENSMUST00000140743.8 |
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| CDS-3UTR GCA 90 bp | TCTTTAGGCTTTTTATTTACAGTATGTCCAGGGGTGAAAGGTAGTGCTACCCTAAGCCATGTCCTCCCATaGCTCTTCCATCTCGCATCC | + |
|
Preference number: 4 (lower is better) Translates to: SLGFLFTVCPGVKGSATLSHVLP*LFHLAS Trigger: GGATGCGAGATGGAAGAGGCATGGGAGGACATGGCT...TAGGGTAGCACTACCTTTCACCCCTGGACATACTGTAAATAAAAAGCCTAAAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020263.14 ENSMUST00000118898.8 |
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| CDS-3UTR GCA 90 bp | TCTTTAGGCTTTTTATTTACAGTATGTCCAGGGGTGAAAGGTAGTGCTACCCTAATCTGCCTCGCCTGTTaGTCTGCCATCGGCTCCAAT | + |
|
Preference number: 4 (lower is better) Translates to: SLGFLFTVCPGVKGSATLICLAC*SAIGSN Trigger: ATTGGAGCCGATGGCAGAGCAACAGGCGAGGCAGAT...TAGGGTAGCACTACCTTTCACCCCTGGACATACTGTAAATAAAAAGCCTAAAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020263.14 ENSMUST00000118898.8 |
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| CDS-3UTR TCA 90 bp | TCTTTAGGCTTTTTATTTACAGTATGTCCAGGGGTGAAAGGTAGTGCTACCCTAACCACCATGGAAACCTaGACTTGCATCACCAGCTCC | + |
|
Preference number: 4 (lower is better) Translates to: SLGFLFTVCPGVKGSATLTTMET*TCITSS Trigger: GGAGCTGGTGATGCAAGTTCAGGTTTCCATGGTGGT...TAGGGTAGCACTACCTTTCACCCCTGGACATACTGTAAATAAAAAGCCTAAAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020263.14 ENSMUST00000118898.8 |
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| CDS-3UTR GCA 90 bp | TCTTTAGGCTTTTTATTTACAGTATGTCCAGGGGTGAAAGGTAGTGCTACCCTACACAAACTCTACATCTaGCTCGCCTGTTGCTCTGCC | + |
|
Preference number: 4 (lower is better) Translates to: SLGFLFTVCPGVKGSATLHKLYI*LACCSA Trigger: GGCAGAGCAACAGGCGAGGCAGATGTAGAGTTTGTG...TAGGGTAGCACTACCTTTCACCCCTGGACATACTGTAAATAAAAAGCCTAAAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020263.14 ENSMUST00000118898.8 |
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| CDS-3UTR CCA 90 bp | CATATCCATCACCTCCTCGTCGCATTCTGTCATACATACTTCCACGCCCAGCTCATCGCTAGCGTCATTTaGACCATTATGTTTCATAAC | + |
|
Preference number: 4 (lower is better) Translates to: HIHHLLVAFCHTYFHAQLIASVI*TIMFHN Trigger: GTTATGAAACATAATGGTCCAAATGACGCTAGCGAT...GAGCTGGGCGTGGAAGTATGTATGACAGAATGCGACGAGGAGGTGATGGATATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000119814.3 ENSMUST00000140743.8 |
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| CDS-3UTR CCA 90 bp | CCATGTCCTCCCATGCCTCTTCCATCTCGCATCCTGTCATCAAAGCCATCGTTTATCGCTAGCGTCATTTaGACCATTATGTTTCATAAC | + |
|
Preference number: 4 (lower is better) Translates to: PCPPMPLPSRILSSKPSFIASVI*TIMFHN Trigger: GTTATGAAACATAATGGTCCAAATGACGCTAGCGAT...AAACGATGGCTTTGATGACAGGATGCGAGATGGAAGAGGCATGGGAGGACATGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140743.8 |
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| CDS-3UTR CCA 90 bp | CATATCCATCACCTCCTCGTCGCATTCTGTCATACATACTTCCACGCCCAGCTCTCCCAGCAATCTTCTTaGTGGATCATAAAATCCTTT | + |
|
Preference number: 4 (lower is better) Translates to: HIHHLLVAFCHTYFHAQLSQQSS*WIIKSF Trigger: AAAGGATTTTATGATCCACCAAGAAGATTGCTGGGA...GAGCTGGGCGTGGAAGTATGTATGACAGAATGCGACGAGGAGGTGATGGATATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000119814.3 ENSMUST00000140743.8 |
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| CDS-3UTR CCA 90 bp | TCTTTAGGCTTTTTATTTACAGTATGTCCAGGGGTGAAAGGTAGTGCTACCCTATTTGCTGCAACCAAATaGCAGTCCACGAAGTCGCAC | + |
|
Preference number: 4 (lower is better) Translates to: SLGFLFTVCPGVKGSATLFAATK*QSTKSH Trigger: GTGCGACTTCGTGGACTGCCATTTGGTTGCAGCAAA...TAGGGTAGCACTACCTTTCACCCCTGGACATACTGTAAATAAAAAGCCTAAAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020263.14 ENSMUST00000118898.8 |
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| CDS-3UTR CCA 90 bp | TCCTCGTCGCATTCTGTCATACATACTTCCACGCCCAGCTCCATAATAACCCCCCAGCAATCTTCTTGGTaGATCATAAAATCCTTTGAT | + |
|
Preference number: 4 (lower is better) Translates to: SSSHSVIHTSTPSSIITPQQSSW*IIKSFD Trigger: ATCAAAGGATTTTATGATCCACCAAGAAGATTGCTG...GGGGGTTATTATGGAGCTGGGCGTGGAAGTATGTATGACAGAATGCGACGAGGA 44% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000119814.3 ENSMUST00000140743.8 |
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| CDS-3UTR CCA 90 bp | CATATCCATCACCTCCTCGTCGCATTCTGTCATACATACTTCCACGCCCAGCTCCAGCAATCTTCTTGGTaGATCATAAAATCCTTTGAT | + |
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Preference number: 4 (lower is better) Translates to: HIHHLLVAFCHTYFHAQLQQSSW*IIKSFD Trigger: ATCAAAGGATTTTATGATCCACCAAGAAGATTGCTG...GAGCTGGGCGTGGAAGTATGTATGACAGAATGCGACGAGGAGGTGATGGATATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000119814.3 ENSMUST00000140743.8 |
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| CDS-3UTR CCA 90 bp | TCTTTAGGCTTTTTATTTACAGTATGTCCAGGGGTGAAAGGTAGTGCTACCCTATATTGGTCTATCATATaGTCCCGGTCGCTGTCCCAG | + |
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Preference number: 4 (lower is better) Translates to: SLGFLFTVCPGVKGSATLYWSII*SRSLSQ Trigger: CTGGGACAGCGACCGGGACCATATGATAGACCAATA...TAGGGTAGCACTACCTTTCACCCCTGGACATACTGTAAATAAAAAGCCTAAAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020263.14 ENSMUST00000118898.8 |
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| CDS-3UTR CCA 90 bp | TCTTTAGGCTTTTTATTTACAGTATGTCCAGGGGTGAAAGGTAGTGCTACCCTACCCTCTTCCTCCTATTaGTCTATCATATGGTCCCGG | + |
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Preference number: 4 (lower is better) Translates to: SLGFLFTVCPGVKGSATLPSSSY*SIIWSR Trigger: CCGGGACCATATGATAGACCAATAGGAGGAAGAGGG...TAGGGTAGCACTACCTTTCACCCCTGGACATACTGTAAATAAAAAGCCTAAAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020263.14 ENSMUST00000118898.8 |
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| CDS-3UTR TCA 90 bp | TCTTTAGGCTTTTTATTTACAGTATGTCCAGGGGTGAAAGGTAGTGCTACCCTAGACCCGTATCCTCCTTaGTTATCCATTCCATCTCTG | + |
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Preference number: 4 (lower is better) Translates to: SLGFLFTVCPGVKGSATLDPYPP*LSIPSL Trigger: CAGAGATGGAATGGATAATCAAGGAGGATACGGGTC...TAGGGTAGCACTACCTTTCACCCCTGGACATACTGTAAATAAAAAGCCTAAAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020263.14 ENSMUST00000118898.8 |
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| CDS-3UTR CCA 90 bp | ATCACCTCCTCGTCGCATTCTGTCATACATACTTCCACGCCCAGCTCCATAATATCCCAGCAATCTTCTTaGTGGATCATAAAATCCTTT | + |
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Preference number: 4 (lower is better) Translates to: ITSSSHSVIHTSTPSSIISQQSS*WIIKSF Trigger: AAAGGATTTTATGATCCACCAAGAAGATTGCTGGGA...TATTATGGAGCTGGGCGTGGAAGTATGTATGACAGAATGCGACGAGGAGGTGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000119814.3 ENSMUST00000140743.8 |
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| CDS-3UTR CCA 90 bp | GTACTGGAATTACTGCCATTTCTGTATTTCTTGACCAAGTGTCAGGAACATCAATATTGGTCTATCATATaGTCCCGGTCGCTGTCCCAG | + |
|
Preference number: 4 (lower is better) Translates to: VLELLPFLYFLTKCQEHQYWSII*SRSLSQ Trigger: CTGGGACAGCGACCGGGACCATATGATAGACCAATA...TTGATGTTCCTGACACTTGGTCAAGAAATACAGAAATGGCAGTAATTCCAGTAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119814.3 |
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| 3UTR CAA 72 bp | GATGGTCATGGACATCCCATAACTCATGACCAGGTTTaGAAACCTCATAGGTACTGGAATTACTGCCATTTC | + |
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Preference number: 4 (lower is better) Translates to: DGHGHPITHDQV*KPHRYWNYCHF Trigger: GAAATGGCAGTAATTCCAGTACCTATGAGGTTTCAAAACCTGGTCATGAGTTATGGGATGTCCATGACCATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119814.3 |
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| CDS-3UTR GCA 90 bp | TCTTTAGGCTTTTTATTTACAGTATGTCCAGGGGTGAAAGGTAGTGCTACCCTACTATTTCCTCTTTGCTaGAACCAAATGGCAGTCCAC | + |
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Preference number: 4 (lower is better) Translates to: SLGFLFTVCPGVKGSATLLFPLC*NQMAVH Trigger: GTGGACTGCCATTTGGTTGCAGCAAAGAGGAAATAG...TAGGGTAGCACTACCTTTCACCCCTGGACATACTGTAAATAAAAAGCCTAAAGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020263.14 ENSMUST00000118898.8 |
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| CDS-3UTR TCA 90 bp | GGACATCCCATAACTCATGACCAGGTTTTGAAACCTCATAGGTACTGGAATTACGATCATAAAATCCTTTaGTTTCACTCCTGCTACTCC | + |
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Preference number: 4 (lower is better) Translates to: GHPITHDQVLKPHRYWNYDHKIL*FHSCYS Trigger: GGAGTAGCAGGAGTGAAATCAAAGGATTTTATGATC...GTAATTCCAGTACCTATGAGGTTTCAAAACCTGGTCATGAGTTATGGGATGTCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119814.3 |
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| CDS-3UTR TCA 90 bp | TCTTTAGGCTTTTTATTTACAGTATGTCCAGGGGTGAAAGGTAGTGCTACCCTAGCTCCAATGTCAATATaGACACGTATTGGATTGAGC | + |
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Preference number: 4 (lower is better) Translates to: SLGFLFTVCPGVKGSATLAPMSI*TRIGLS Trigger: GCTCAATCCAATACGTGTTCATATTGACATTGGAGC...TAGGGTAGCACTACCTTTCACCCCTGGACATACTGTAAATAAAAAGCCTAAAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020263.14 ENSMUST00000118898.8 |
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| CDS-3UTR GCA 90 bp | TCTTTAGGCTTTTTATTTACAGTATGTCCAGGGGTGAAAGGTAGTGCTACCCTAAGACATGGCAGCTACTaGATCTTCATGTGTCACAAA | + |
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Preference number: 4 (lower is better) Translates to: SLGFLFTVCPGVKGSATLRHGSY*IFMCHK Trigger: TTTGTGACACATGAAGATGCAGTAGCTGCCATGTCT...TAGGGTAGCACTACCTTTCACCCCTGGACATACTGTAAATAAAAAGCCTAAAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020263.14 ENSMUST00000118898.8 |
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| CDS-3UTR TCA 90 bp | TCTTTAGGCTTTTTATTTACAGTATGTCCAGGGGTGAAAGGTAGTGCTACCCTAGATCATAAAATCCTTTaGTTTCACTCCTGCTACTCC | + |
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Preference number: 4 (lower is better) Translates to: SLGFLFTVCPGVKGSATLDHKIL*FHSCYS Trigger: GGAGTAGCAGGAGTGAAATCAAAGGATTTTATGATC...TAGGGTAGCACTACCTTTCACCCCTGGACATACTGTAAATAAAAAGCCTAAAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000020263.14 ENSMUST00000118898.8 |
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| CDS-3UTR TCA 90 bp | TCTTTAGGCTTTTTATTTACAGTATGTCCAGGGGTGAAAGGTAGTGCTACCCTATATTGGATTGAGCGGTaGGAAGAAATTAGCAATATC | + |
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Preference number: 4 (lower is better) Translates to: SLGFLFTVCPGVKGSATLYWIER*EEISNI Trigger: GATATTGCTAATTTCTTCTCACCGCTCAATCCAATA...TAGGGTAGCACTACCTTTCACCCCTGGACATACTGTAAATAAAAAGCCTAAAGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020263.14 ENSMUST00000118898.8 |
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| CDS-3UTR CCA 90 bp | TCTTTAGGCTTTTTATTTACAGTATGTCCAGGGGTGAAAGGTAGTGCTACCCTAATCGCTAGCGTCATTTaGACCATTATGTTTCATAAC | + |
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Preference number: 4 (lower is better) Translates to: SLGFLFTVCPGVKGSATLIASVI*TIMFHN Trigger: GTTATGAAACATAATGGTCCAAATGACGCTAGCGAT...TAGGGTAGCACTACCTTTCACCCCTGGACATACTGTAAATAAAAAGCCTAAAGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020263.14 ENSMUST00000118898.8 |
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| CDS-3UTR CCA 90 bp | TCTTTAGGCTTTTTATTTACAGTATGTCCAGGGGTGAAAGGTAGTGCTACCCTATCCCAGCAATCTTCTTaGTGGATCATAAAATCCTTT | + |
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Preference number: 4 (lower is better) Translates to: SLGFLFTVCPGVKGSATLSQQSS*WIIKSF Trigger: AAAGGATTTTATGATCCACCAAGAAGATTGCTGGGA...TAGGGTAGCACTACCTTTCACCCCTGGACATACTGTAAATAAAAAGCCTAAAGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000020263.14 ENSMUST00000118898.8 |
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| CDS-3UTR CCA 90 bp | TCTTTAGGCTTTTTATTTACAGTATGTCCAGGGGTGAAAGGTAGTGCTACCCTACAGCAATCTTCTTGGTaGATCATAAAATCCTTTGAT | + |
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Preference number: 4 (lower is better) Translates to: SLGFLFTVCPGVKGSATLQQSSW*IIKSFD Trigger: ATCAAAGGATTTTATGATCCACCAAGAAGATTGCTG...TAGGGTAGCACTACCTTTCACCCCTGGACATACTGTAAATAAAAAGCCTAAAGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000020263.14 ENSMUST00000118898.8 |
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| 3UTR CAA 72 bp | GAATCCAGATACGTCTTGAATTATTCAGAGCTATGCTaGATAAAAGAGACCGAAAAGAATACAGAATTAGCT | + |
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Preference number: 4 (lower is better) Translates to: ESRYVLNYSELC*IKETEKNTELA Trigger: AGCTAATTCTGTATTCTTTTCGGTCTCTTTTATCAAGCATAGCTCTGAATAATTCAAGACGTATCTGGATTC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020263.14 ENSMUST00000118898.8 |
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| CDS CCA 90 bp | CCCAGCTCCATAATAACCCCCTCTTCCTCCTATTGGTCTATCATATaGTCCCGGTCGCTGTCCCAGCAATCTTCTTGGTGGATCATAAAA | + |
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Preference number: 5 (lower is better) Translates to: PSSIITPSSSYWSII*SRSLSQQSSWWIIK Trigger: TTTTATGATCCACCAAGAAGATTGCTGGGACAGCGACCGGGACCATATGATAGACCAATAGGAGGAAGAGGGGGTTATTATGGAGCTGGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020263.14 ENSMUST00000118898.8 |
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| CDS-3UTR CAA 90 bp | TGTTCCCCATCCCCATTCTCCCAACAGACCCGTATCCTCCTTGATTATCCATTCGTCCCAGCAATCTTCTaGGTGGATCATAAAATCCTT | + |
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Preference number: 5 (lower is better) Translates to: CSPSPFSQQTRILLDYPFVPAIF*VDHKIL Trigger: AAGGATTTTATGATCCACCAAGAAGATTGCTGGGAC...GAATGGATAATCAAGGAGGATACGGGTCTGTTGGGAGAATGGGGATGGGGAACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000140743.8 |
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| CDS-3UTR CAA 90 bp | TCTTTAGGCTTTTTATTTACAGTATGTCCAGGGGTGAAAGGTAGTGCTACCCTACCCCTCTTCCTCCTATaGGTCTATCATATGGTCCCG | + |
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Preference number: 5 (lower is better) Translates to: SLGFLFTVCPGVKGSATLPLFLL*VYHMVP Trigger: CGGGACCATATGATAGACCAATAGGAGGAAGAGGGG...TAGGGTAGCACTACCTTTCACCCCTGGACATACTGTAAATAAAAAGCCTAAAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000020263.14 ENSMUST00000118898.8 |
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| CDS-3UTR CAA 90 bp | TCTTTAGGCTTTTTATTTACAGTATGTCCAGGGGTGAAAGGTAGTGCTACCCTAGTCCCAGCAATCTTCTaGGTGGATCATAAAATCCTT | + |
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Preference number: 5 (lower is better) Translates to: SLGFLFTVCPGVKGSATLVPAIF*VDHKIL Trigger: AAGGATTTTATGATCCACCAAGAAGATTGCTGGGAC...TAGGGTAGCACTACCTTTCACCCCTGGACATACTGTAAATAAAAAGCCTAAAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000020263.14 ENSMUST00000118898.8 |
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| CDS-3UTR CAA 90 bp | AAGTTCTCTAGGTGTCAATATATGCATCAATCAAGTTCCACCAGATGGTCATGGGTCCCAGCAATCTTCTaGGTGGATCATAAAATCCTT | + |
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Preference number: 5 (lower is better) Translates to: KFSRCQYMHQSSSTRWSWVPAIF*VDHKIL Trigger: AAGGATTTTATGATCCACCAAGAAGATTGCTGGGAC...CCATGACCATCTGGTGGAACTTGATTGATGCATATATTGACACCTAGAGAACTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119814.3 |
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| CDS CCA 72 bp | ATAATAACCCCCTCTTCCTCCTATTGGTCTATCATATaGTCCCGGTCGCTGTCCCAGCAATCTTCTTGGTGG | + |
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Preference number: 6 (lower is better) Translates to: IITPSSSYWSII*SRSLSQQSSWW Trigger: CCACCAAGAAGATTGCTGGGACAGCGACCGGGACCATATGATAGACCAATAGGAGGAAGAGGGGGTTATTAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020263.14 ENSMUST00000118898.8 |
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| CDS CCA 72 bp | ATATGGTCCCGGTCGCTGTCCCAGCAATCTTCTTGGTaGATCATAAAATCCTTTGATTTCACTCCTGCTACT | + |
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Preference number: 6 (lower is better) Translates to: IWSRSLSQQSSW*IIKSFDFTPAT Trigger: AGTAGCAGGAGTGAAATCAAAGGATTTTATGATCCACCAAGAAGATTGCTGGGACAGCGACCGGGACCATAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000020263.14 ENSMUST00000118898.8 ENSMUST00000119814.3 ENSMUST00000140743.8 |
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| CDS CCA 72 bp | ATCATATGGTCCCGGTCGCTGTCCCAGCAATCTTCTTaGTGGATCATAAAATCCTTTGATTTCACTCCTGCT | + |
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Preference number: 6 (lower is better) Translates to: IIWSRSLSQQSS*WIIKSFDFTPA Trigger: AGCAGGAGTGAAATCAAAGGATTTTATGATCCACCAAGAAGATTGCTGGGACAGCGACCGGGACCATATGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000020263.14 ENSMUST00000118898.8 ENSMUST00000119814.3 ENSMUST00000140743.8 |
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