Pregenerated sensors for HNRNPH2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045427Ensembl transcript IDs: ENSMUST00000050331.13, ENSMUST00000059297.6, ENSMUST00000074950.11, ENSMUST00000113202.8, ENSMUST00000113203.2
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | TCCAGTTCCTATAAAGATAGCTTTTATTCATGTAGATGTTATTGGATGGTCCCTCCCTCTTCCAGCCCCTaGCCTATCGTAAGGACCCGG | + |
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Preference number: 4 (lower is better) Translates to: SSSYKDSFYSCRCYWMVPPSSSP*PIVRTR Trigger: CCGGGTCCTTACGATAGGCCAGGGGCTGGAAGAGGG...AGGGACCATCCAATAACATCTACATGAATAAAAGCTATCTTTATAGGAACTGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000050331.13 ENSMUST00000059297.6 ENSMUST00000074950.11 ENSMUST00000113202.8 ENSMUST00000113203.2 |
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| CDS-3UTR CCA 90 bp | ATAAAGACACCCTCCCTACTCTATCCAGTTCCTATAAAGATAGCTTTTATTCATCCCTCTTCCAGCCCCTaGCCTATCGTAAGGACCCGG | + |
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Preference number: 4 (lower is better) Translates to: IKTPSLLYPVPIKIAFIHPSSSP*PIVRTR Trigger: CCGGGTCCTTACGATAGGCCAGGGGCTGGAAGAGGG...ATGAATAAAAGCTATCTTTATAGGAACTGGATAGAGTAGGGAGGGTGTCTTTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000050331.13 ENSMUST00000059297.6 ENSMUST00000074950.11 ENSMUST00000113202.8 ENSMUST00000113203.2 |
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| CDS-3UTR CCA 90 bp | CCAGTTCCTATAAAGATAGCTTTTATTCATGTAGATGTTATTGGATGGTCCCTTCCCTCTTCCAGCCCCTaGCCTATCGTAAGGACCCGG | + |
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Preference number: 4 (lower is better) Translates to: PVPIKIAFIHVDVIGWSLPSSSP*PIVRTR Trigger: CCGGGTCCTTACGATAGGCCAGGGGCTGGAAGAGGG...AAGGGACCATCCAATAACATCTACATGAATAAAAGCTATCTTTATAGGAACTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000050331.13 ENSMUST00000059297.6 ENSMUST00000074950.11 ENSMUST00000113202.8 ENSMUST00000113203.2 |
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| CDS-3UTR CCA 90 bp | GATATAAAGACACCCTCCCTACTCTATCCAGTTCCTATAAAGATAGCTTTTATTCTTGCTACAGCCAAATaGGAGTCCTCTGAGTCGTAC | + |
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Preference number: 4 (lower is better) Translates to: DIKTPSLLYPVPIKIAFILATAK*ESSESY Trigger: GTACGACTCAGAGGACTCCCATTTGGCTGTAGCAAG...AATAAAAGCTATCTTTATAGGAACTGGATAGAGTAGGGAGGGTGTCTTTATATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000050331.13 ENSMUST00000059297.6 ENSMUST00000074950.11 ENSMUST00000113202.8 ENSMUST00000113203.2 |
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| CDS-3UTR CCA 90 bp | ATAAAGACACCCTCCCTACTCTATCCAGTTCCTATAAAGATAGCTTTTATTCATCTTGCTACAGCCAAATaGGAGTCCTCTGAGTCGTAC | + |
|
Preference number: 4 (lower is better) Translates to: IKTPSLLYPVPIKIAFIHLATAK*ESSESY Trigger: GTACGACTCAGAGGACTCCCATTTGGCTGTAGCAAG...ATGAATAAAAGCTATCTTTATAGGAACTGGATAGAGTAGGGAGGGTGTCTTTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000050331.13 ENSMUST00000059297.6 ENSMUST00000074950.11 ENSMUST00000113202.8 ENSMUST00000113203.2 |
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| CDS-3UTR CCA 90 bp | CCAGTTCCTATAAAGATAGCTTTTATTCATGTAGATGTTATTGGATGGTCCCTTCTTGCTACAGCCAAATaGGAGTCCTCTGAGTCGTAC | + |
|
Preference number: 4 (lower is better) Translates to: PVPIKIAFIHVDVIGWSLLATAK*ESSESY Trigger: GTACGACTCAGAGGACTCCCATTTGGCTGTAGCAAG...AAGGGACCATCCAATAACATCTACATGAATAAAAGCTATCTTTATAGGAACTGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000050331.13 ENSMUST00000059297.6 ENSMUST00000074950.11 ENSMUST00000113202.8 ENSMUST00000113203.2 |
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| CDS-3UTR CCA 90 bp | TCCAGTTCCTATAAAGATAGCTTTTATTCATGTAGATGTTATTGGATGGTCCCTCTTGCTACAGCCAAATaGGAGTCCTCTGAGTCGTAC | + |
|
Preference number: 4 (lower is better) Translates to: SSSYKDSFYSCRCYWMVPLATAK*ESSESY Trigger: GTACGACTCAGAGGACTCCCATTTGGCTGTAGCAAG...AGGGACCATCCAATAACATCTACATGAATAAAAGCTATCTTTATAGGAACTGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000050331.13 ENSMUST00000059297.6 ENSMUST00000074950.11 ENSMUST00000113202.8 ENSMUST00000113203.2 |
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| CDS-3UTR TCA 90 bp | ATCATACTGGATATAAAGACACCCTCCCTACTCTATCCAGTTCCTATAAAGATACAGCTCGGCTACTCTTaGAGATTTCGATGTACCTAT | + |
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Preference number: 4 (lower is better) Translates to: IILDIKTPSLLYPVPIKIQLGYS*RFRCTY Trigger: ATAGGTACATCGAAATCTTCAAGAGTAGCCGAGCTG...TATCTTTATAGGAACTGGATAGAGTAGGGAGGGTGTCTTTATATCCAGTATGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000050331.13 ENSMUST00000059297.6 ENSMUST00000074950.11 ENSMUST00000113202.8 ENSMUST00000113203.2 |
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| CDS-3UTR CCA 90 bp | TCCAGTTCCTATAAAGATAGCTTTTATTCATGTAGATGTTATTGGATGGTCCCTCATGAGCTTTCTAGGTaGATCATAGTGGGTTCGGAC | + |
|
Preference number: 4 (lower is better) Translates to: SSSYKDSFYSCRCYWMVPHELSR*IIVGSD Trigger: GTCCGAACCCACTATGATCCACCTAGAAAGCTCATG...AGGGACCATCCAATAACATCTACATGAATAAAAGCTATCTTTATAGGAACTGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000050331.13 ENSMUST00000059297.6 ENSMUST00000074950.11 ENSMUST00000113202.8 ENSMUST00000113203.2 |
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| CDS-3UTR TCA 90 bp | CCAGTTCCTATAAAGATAGCTTTTATTCATGTAGATGTTATTGGATGGTCCCTTCAGCTCGGCTACTCTTaGAGATTTCGATGTACCTAT | + |
|
Preference number: 4 (lower is better) Translates to: PVPIKIAFIHVDVIGWSLQLGYS*RFRCTY Trigger: ATAGGTACATCGAAATCTTCAAGAGTAGCCGAGCTG...AAGGGACCATCCAATAACATCTACATGAATAAAAGCTATCTTTATAGGAACTGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000050331.13 ENSMUST00000059297.6 ENSMUST00000074950.11 ENSMUST00000113202.8 ENSMUST00000113203.2 |
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| CDS-3UTR TCA 90 bp | ATAAAGACACCCTCCCTACTCTATCCAGTTCCTATAAAGATAGCTTTTATTCATCAGCTCGGCTACTCTTaGAGATTTCGATGTACCTAT | + |
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Preference number: 4 (lower is better) Translates to: IKTPSLLYPVPIKIAFIHQLGYS*RFRCTY Trigger: ATAGGTACATCGAAATCTTCAAGAGTAGCCGAGCTG...ATGAATAAAAGCTATCTTTATAGGAACTGGATAGAGTAGGGAGGGTGTCTTTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000050331.13 ENSMUST00000059297.6 ENSMUST00000074950.11 ENSMUST00000113202.8 ENSMUST00000113203.2 |
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| CDS-3UTR TCA 90 bp | GATATAAAGACACCCTCCCTACTCTATCCAGTTCCTATAAAGATAGCTTTTATTCAGCTCGGCTACTCTTaGAGATTTCGATGTACCTAT | + |
|
Preference number: 4 (lower is better) Translates to: DIKTPSLLYPVPIKIAFIQLGYS*RFRCTY Trigger: ATAGGTACATCGAAATCTTCAAGAGTAGCCGAGCTG...AATAAAAGCTATCTTTATAGGAACTGGATAGAGTAGGGAGGGTGTCTTTATATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000050331.13 ENSMUST00000059297.6 ENSMUST00000074950.11 ENSMUST00000113202.8 ENSMUST00000113203.2 |
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| CDS-3UTR GCA 90 bp | ATCATACTGGATATAAAGACACCCTCCCTACTCTATCCAGTTCCTATAAAGATAAACGAACACCTGATGTaGCATTTTGGATTTTGCAAT | + |
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Preference number: 4 (lower is better) Translates to: IILDIKTPSLLYPVPIKINEHLM*HFGFCN Trigger: ATTGCAAAATCCAAAATGGCACATCAGGTGTTCGTT...TATCTTTATAGGAACTGGATAGAGTAGGGAGGGTGTCTTTATATCCAGTATGAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000050331.13 ENSMUST00000059297.6 ENSMUST00000074950.11 ENSMUST00000113202.8 ENSMUST00000113203.2 |
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| CDS-3UTR GCA 90 bp | GATATAAAGACACCCTCCCTACTCTATCCAGTTCCTATAAAGATAGCTTTTATTGGTCCTATTTCAATGTaGACTCTCATGGGATTAAGA | + |
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Preference number: 4 (lower is better) Translates to: DIKTPSLLYPVPIKIAFIGPISM*TLMGLR Trigger: TCTTAATCCCATGAGAGTGCACATTGAAATAGGACC...AATAAAAGCTATCTTTATAGGAACTGGATAGAGTAGGGAGGGTGTCTTTATATC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000050331.13 ENSMUST00000059297.6 ENSMUST00000074950.11 ENSMUST00000113202.8 ENSMUST00000113203.2 |
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| CDS-3UTR GCA 90 bp | CCAGTTCCTATAAAGATAGCTTTTATTCATGTAGATGTTATTGGATGGTCCCTTGGTCCTATTTCAATGTaGACTCTCATGGGATTAAGA | + |
|
Preference number: 4 (lower is better) Translates to: PVPIKIAFIHVDVIGWSLGPISM*TLMGLR Trigger: TCTTAATCCCATGAGAGTGCACATTGAAATAGGACC...AAGGGACCATCCAATAACATCTACATGAATAAAAGCTATCTTTATAGGAACTGG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000050331.13 ENSMUST00000059297.6 ENSMUST00000074950.11 ENSMUST00000113202.8 ENSMUST00000113203.2 |
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| CDS-3UTR GCA 90 bp | CCAGTTCCTATAAAGATAGCTTTTATTCATGTAGATGTTATTGGATGGTCCCTTAACGAACACCTGATGTaGCATTTTGGATTTTGCAAT | + |
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Preference number: 4 (lower is better) Translates to: PVPIKIAFIHVDVIGWSLNEHLM*HFGFCN Trigger: ATTGCAAAATCCAAAATGGCACATCAGGTGTTCGTT...AAGGGACCATCCAATAACATCTACATGAATAAAAGCTATCTTTATAGGAACTGG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 5 transcripts: ENSMUST00000050331.13 ENSMUST00000059297.6 ENSMUST00000074950.11 ENSMUST00000113202.8 ENSMUST00000113203.2 |
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| CDS-3UTR GCA 90 bp | GATATAAAGACACCCTCCCTACTCTATCCAGTTCCTATAAAGATAGCTTTTATTAACGAACACCTGATGTaGCATTTTGGATTTTGCAAT | + |
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Preference number: 4 (lower is better) Translates to: DIKTPSLLYPVPIKIAFINEHLM*HFGFCN Trigger: ATTGCAAAATCCAAAATGGCACATCAGGTGTTCGTT...AATAAAAGCTATCTTTATAGGAACTGGATAGAGTAGGGAGGGTGTCTTTATATC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 5 transcripts: ENSMUST00000050331.13 ENSMUST00000059297.6 ENSMUST00000074950.11 ENSMUST00000113202.8 ENSMUST00000113203.2 |
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| CDS CCA 90 bp | CCTATCGTAAGGACCCGGGCGCTGCATAGTCATGAGCTTTCTAGGTaGATCATAGTGGGTTCGGACTTCAGCTCGGCTACTCTTGAAGAT | + |
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Preference number: 5 (lower is better) Translates to: PIVRTRALHSHELSR*IIVGSDFSSATLED Trigger: ATCTTCAAGAGTAGCCGAGCTGAAGTCCGAACCCACTATGATCCACCTAGAAAGCTCATGACTATGCAGCGCCCGGGTCCTTACGATAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000050331.13 ENSMUST00000059297.6 ENSMUST00000074950.11 ENSMUST00000113202.8 ENSMUST00000113203.2 |
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| CDS CCA 72 bp | AGGACCCGGGCGCTGCATAGTCATGAGCTTTCTAGGTaGATCATAGTGGGTTCGGACTTCAGCTCGGCTACT | + |
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Preference number: 6 (lower is better) Translates to: RTRALHSHELSR*IIVGSDFSSAT Trigger: AGTAGCCGAGCTGAAGTCCGAACCCACTATGATCCACCTAGAAAGCTCATGACTATGCAGCGCCCGGGTCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000050331.13 ENSMUST00000059297.6 ENSMUST00000074950.11 ENSMUST00000113202.8 ENSMUST00000113203.2 |
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